Citrus Sinensis ID: 030274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MNREEDGGDEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQAI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEcccEEEEEEEEEcccccccccEEEccHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccHHHHHHHccccccEEEEEcccccccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcHHHccccEEEEEccccHHHHHHHHHHHccEEEccccHHHHHHHHHHHHHHccccccccccEEEEEEEEcccHHHHHHHHHHccccccEEEEccEEEEEHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mnreedggdevvcldesffinddyqlttftfgsQVLHLFCLqsastdfdltgqlvwpgamlmndylsknpdvlqassilelgsgvgvtGILCSRFCREVLLTDHNEEVLKILKKNIEhhtssenpnsdaGLAVAKLEWGNSDQINKIIQkypggfdliLGADIYILYNRSLLMTSFFQAI
Flexible Loop (DISEMBL)
mnreedggdeVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIehhtssenpnsdAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQAI
Low Complexity Region (SEG)
MNREEDGGDEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQAI
Disordered region (IsUnstruct)
*********EVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNI*************GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF***
Disordered Region (DISOPRED)
******G*****CL*ESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQAI
Disordered Region (DISEMBL)
*********EVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEH********SDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQAI
Disordered Region (DISPRO)
********DEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQAI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNREEDGGDEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q28IN4	224	Protein-lysine methyltran	yes	no	0.633	0.508	0.325	2e-09
Q8WXB1	218	Protein-lysine methyltran	yes	no	0.7	0.577	0.307	3e-09
Q3UZW7	335	Protein FAM86A OS=Mus mus	yes	no	0.688	0.370	0.266	2e-07
A7IQW5	206	Protein-lysine methyltran	yes	no	0.705	0.616	0.284	2e-07
A2AA28	253	Methyltransferase-like pr	no	no	0.638	0.454	0.307	5e-07
Q6GQ33	318	Calmodulin-lysine N-methy	N/A	no	0.644	0.364	0.304	5e-07
Q6DJF8	234	Methyltransferase-like pr	N/A	no	0.661	0.508	0.294	6e-07
Q1JPJ9	340	Protein FAM86A OS=Bos tau	yes	no	0.672	0.355	0.253	6e-07
A4IGU3	215	Protein-lysine methyltran	no	no	0.583	0.488	0.293	1e-06
Q96G04	330	Protein FAM86A OS=Homo sa	no	no	0.7	0.381	0.273	1e-06

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 12/126 (9%)

Query: 55  VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK 114
           VW  A+ +  Y  +     +   ++ELG+G G+ GIL S     V LTD     L  ++K
Sbjct: 57  VWDAALFLCGYFEEQKLDFKGKKVIELGAGTGIVGILVSLLGGHVTLTD-LPHALSQIQK 115

Query: 115 NIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMT 174
           N+  + SS NP       V  L WG  DQ     +K+P  +D +LGADI  L++   L+ 
Sbjct: 116 NVSANVSSNNPPQ-----VCALSWG-LDQ-----EKFPQDYDFVLGADIVYLHDTYPLLI 164

Query: 175 SFFQAI 180
              Q +
Sbjct: 165 QTLQYL 170

Probable methyltransferase.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 26  LTTFTFGSQVLHLFCLQSASTDFDLTG--QLVWPGAMLMNDYLSKNPDVLQASSILELGS 83
           L TF+F +  + +        D+   G   +VW  A++++ YL      L+  S +ELG+
Sbjct: 21  LATFSFANHTIQI------RQDWRHLGVAAVVWDAAIVLSTYLEMGAVELRGRSAVELGA 74

Query: 84  GVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143
           G G+ GI+ +     V +TD  +  L+ LK N++   ++  P+      V +L WG +  
Sbjct: 75  GTGLVGIVAALLGAHVTITD-RKVALEFLKSNVQ---ANLPPHIQTKTVVKELTWGQN-- 128

Query: 144 INKIIQKYPGGFDLILGADIYIL 166
              +    PG FDLILGADI  L
Sbjct: 129 ---LGSFSPGEFDLILGADIIYL 148

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q3UZW7|FA86A_MOUSE Protein FAM86A OS=Mus musculus GN=Fam86a PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 15/139 (10%)

Query: 51  TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEV 108
           TG + W  A+ + ++  +NP      +ILELGSG G+TG+   + C  R  + +D + +V
Sbjct: 134 TGLVTWDAALYLAEWAIENPAAFTDRTILELGSGAGLTGLAICKACCPRAYIFSDCHAQV 193

Query: 109 LKILKKNIEHHTSSENPNS--DAG---LAVAKLEWGNSDQINKIIQKYPGGF--DLILGA 161
           L+ L+ N+  +  S  P++  DAG   + VA+L+W      +++       F  D+++ A
Sbjct: 194 LEQLRGNVLLNGFSLEPHTPIDAGSSKVTVAQLDW------DEVTASQLSAFQADVVIAA 247

Query: 162 DIYILYNRSLLMTSFFQAI 180
           D+   +  +L +    + +
Sbjct: 248 DVLYCWEMTLSLVRVLKML 266

Mus musculus (taxid: 10090)

>sp|A7IQW5|MT21_CAEEL Protein-lysine methyltransferase C42C1.13 OS=Caenorhabditis elegans GN=C42C1.13 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 28  TFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGV 87
             +F +    L   Q   TD    G ++W  A++   Y  K P   +   +LELGSG GV
Sbjct: 10  VISFNNDHDELIIYQETVTD---VGGVIWDSALMTIHYFFKYPKPFEGKKVLELGSGTGV 66

Query: 88  TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147
            GI  +    +V++TD  E  L +++KN+E +       +   + V  L+W   D+I   
Sbjct: 67  GGIALAALGADVIITDLPER-LALIEKNVEANRKL----TGNRIKVQVLDW-TKDRI--- 117

Query: 148 IQKYPGGFDLILGADIYILYNRSL 171
               P G D++L  D  + YN ++
Sbjct: 118 ----PEGLDMVLAIDC-VYYNSTI 136

Protein-lysine N-methyltransferase.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2AA28|MET23_MOUSE Methyltransferase-like protein 23 OS=Mus musculus GN=Mettl23 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 15/130 (11%)

Query: 52  GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE--EVL 109
           G  VWP A+++  YL  +   L   ++LE+G+GV + GIL ++   +V+L+D +E    L
Sbjct: 63  GMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGILAAKCGAKVILSDSSEFPHCL 122

Query: 110 KILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN- 168
            I +++ +        N+   + V  L WG+   I+K I   P   D+ILG+D++     
Sbjct: 123 DICRQSCQM-------NNLPQVEVVGLTWGH---ISKDILSLPPQ-DIILGSDVFFEPED 171

Query: 169 -RSLLMTSFF 177
             S+L T +F
Sbjct: 172 FESILATVYF 181

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6GQ33|CMKMT_XENLA Calmodulin-lysine N-methyltransferase OS=Xenopus laevis GN=camkmt PE=1 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 46  TDFDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTG---ILCSRFCREVLL 101
           T FD TG + VWP   +M  Y  K+ D+ +  ++ ELG G+       +  S   +EVLL
Sbjct: 112 TSFDNTGNVCVWPSEEVMAYYCLKHKDIFRGLAVCELGGGMTCLAGLMVAISADVKEVLL 171

Query: 102 TDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGA 161
           TD NE+ +K +  +I     +E    D  ++   L W N   ++++     G FD+++ A
Sbjct: 172 TDGNEKAIKNV-SDIIRRPQNEEMFKDRLVSSRVLRWDNETDVSQL----EGHFDIVICA 226

Query: 162 DIYIL 166
           D   L
Sbjct: 227 DCLFL 231

Catalyzes the trimethylation of 'Lys-116' in calmodulin.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 17/136 (12%)

Query: 52  GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKI 111
           G  VWP A+++  YL  +   L    +LE+G+GV + GIL ++   +V+L+D  E     
Sbjct: 40  GMYVWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGILAAKCGAKVILSDSAE----- 94

Query: 112 LKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY------- 164
           + + +E+   S   N+  G+ V  L WG   +++  +   P   D+ILG+D++       
Sbjct: 95  MPQCLENCRRSCKMNNIVGVPVIGLTWG---EVSPDLLDLP-PIDIILGSDVFYEPKDFE 150

Query: 165 -ILYNRSLLMTSFFQA 179
            IL     LM    QA
Sbjct: 151 DILLTVRFLMERMPQA 166

Probable methyltransferase.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q1JPJ9|FA86A_BOVIN Protein FAM86A OS=Bos taurus GN=FAM86A PE=2 SV=2

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 21/142 (14%)

Query: 39  FCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCRE 98
            C  +A      TG + W  A+ + ++  +NP V     +LELGSG G+TG+   + CR 
Sbjct: 122 LCESTAIVSHGTTGLVTWNAALYLAEWAVENPAVFAHRMVLELGSGAGLTGLAICKTCRP 181

Query: 99  --VLLTDHNEEVLKILKKNI--------------EHHTSSENPNSD-AGLAVAKLEWGNS 141
              + +D +  VL+ L+ N+                H     P ++   + VA+L+W ++
Sbjct: 182 RAYIFSDCHSHVLEQLRGNVLLNGFSLEPSIDTWAQHPGPHTPEAERPWVTVARLDW-DT 240

Query: 142 DQINKIIQKYPGGFDLILGADI 163
               ++    P   D++L AD+
Sbjct: 241 VTAPQLAAFQP---DVVLAADV 259

Bos taurus (taxid: 9913)

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 11/116 (9%)

Query: 51  TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLK 110
              +VW  A+++  YL      LQ SS++ELG+G G+ GI+ +    +V +TD  +  ++
Sbjct: 42  VAAVVWDAALVLCMYLESEGIHLQNSSVIELGAGTGLVGIVAALLGAQVTITD-RDLAME 100

Query: 111 ILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166
            L+ N+  +   ++ +    ++V  L WG S      ++++   +D ILGADI  L
Sbjct: 101 FLRMNVRDNIPKDSLHR---VSVRALNWGKS------LEEF-STYDFILGADIIYL 146

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96G04|FA86A_HUMAN Protein FAM86A OS=Homo sapiens GN=FAM86A PE=2 SV=2

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 13/139 (9%)

Query: 43  SASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCRE--VL 100
           +A   +  TG + W  A+ + ++  +NP V    ++LELGSG G+TG+   + CR    +
Sbjct: 126 TAIISYGTTGLVTWDAALYLAEWAIENPAVFTNRTVLELGSGAGLTGLAICKMCRPRAYI 185

Query: 101 LTDHNEEVLKILKKNIEHHTSSENPNSDAGL-----AVAKLEWGNSDQINKIIQKYPGGF 155
            +D +  VL+ L+ N+  +  S   +  A L      VA+L+W +   ++++    P   
Sbjct: 186 FSDCHSRVLEQLRGNVLLNGLSLEADITAKLDSPRVTVAQLDW-DVATVHQLSAFQP--- 241

Query: 156 DLILGADIYILYNRSLLMT 174
           D+++ AD  +LY    +M+
Sbjct: 242 DVVIAAD--VLYCPEAIMS 258

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
296083891	189	unnamed protein product [Vitis vinifera]	0.966	0.920	0.742	5e-69
225435864	238	PREDICTED: methyltransferase-like protei	0.9	0.680	0.754	5e-66
224103975	237	predicted protein [Populus trichocarpa]	0.85	0.645	0.756	3e-63
356525657	185	PREDICTED: methyltransferase-like protei	0.872	0.848	0.727	7e-63
186503322	209	Putative methyltransferase family protei	0.916	0.789	0.691	2e-62
297825909	252	hypothetical protein ARALYDRAFT_481556 [	0.888	0.634	0.718	6e-62
186503314	256	Putative methyltransferase family protei	0.9	0.632	0.686	3e-61
449444849	239	PREDICTED: methyltransferase-like protei	0.855	0.644	0.727	5e-61
26449997	256	unknown protein [Arabidopsis thaliana]	0.9	0.632	0.680	9e-61
356525659	245	PREDICTED: methyltransferase-like protei	0.838	0.616	0.712	1e-59

>gi|296083891|emb|CBI24279.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 146/175 (83%), Gaps = 1/175 (0%)

Query: 1   MNREEDGGDEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAM 60
           M RE  G D++VCLD SFFINDDYQLT FTFGSQVL LFCL SASTDFDLTGQLVWPGAM
Sbjct: 1   MEREGGGEDDIVCLDGSFFINDDYQLTKFTFGSQVLELFCLHSASTDFDLTGQLVWPGAM 60

Query: 61  LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT 120
           L+NDYLSKN ++L+  S++ELGSGVGVTGILCSRFC EV+LTDHNEEVLKIL KNIE HT
Sbjct: 61  LLNDYLSKNAEILRGCSVIELGSGVGVTGILCSRFCHEVVLTDHNEEVLKILNKNIELHT 120

Query: 121 SSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTS 175
           SSEN N   GL   KLEWG+S QI +I+ ++ GGFDL+LGADIYIL N S+L  S
Sbjct: 121 SSENRNC-TGLVAKKLEWGSSTQIKQILDEHSGGFDLVLGADIYILINTSILKFS 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435864|ref|XP_002265488.1| PREDICTED: methyltransferase-like protein 22-like [Vitis vinifera]

 Score =  255 bits (652), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 138/163 (84%), Gaps = 1/163 (0%)

Query: 1   MNREEDGGDEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAM 60
           M RE  G D++VCLD SFFINDDYQLT FTFGSQVL LFCL SASTDFDLTGQLVWPGAM
Sbjct: 1   MEREGGGEDDIVCLDGSFFINDDYQLTKFTFGSQVLELFCLHSASTDFDLTGQLVWPGAM 60

Query: 61  LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT 120
           L+NDYLSKN ++L+  S++ELGSGVGVTGILCSRFC EV+LTDHNEEVLKIL KNIE HT
Sbjct: 61  LLNDYLSKNAEILRGCSVIELGSGVGVTGILCSRFCHEVVLTDHNEEVLKILNKNIELHT 120

Query: 121 SSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163
           SSEN N   GL   KLEWG+S QI +I+ ++ GGFDL+LGADI
Sbjct: 121 SSENRNC-TGLVAKKLEWGSSTQIKQILDEHSGGFDLVLGADI 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103975|ref|XP_002313268.1| predicted protein [Populus trichocarpa] gi|222849676|gb|EEE87223.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/156 (75%), Positives = 135/156 (86%), Gaps = 3/156 (1%)

Query: 11  VVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNP 70
           +VCLD SFFIND+Y+LTTFTFGSQV+ L CL SASTDFDLTGQLVWPGA+L+NDYL+KN 
Sbjct: 12  IVCLDASFFINDNYRLTTFTFGSQVIELLCLHSASTDFDLTGQLVWPGALLLNDYLAKNA 71

Query: 71  DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG 130
           ++LQ  SI+ELGSGVGVTGILCSRFCR++LLTDHN+E   ILKKNIE   SSENPN  A 
Sbjct: 72  EMLQGCSIIELGSGVGVTGILCSRFCRQLLLTDHNDE---ILKKNIELCASSENPNCCAE 128

Query: 131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166
           LA  KLEWGNSD I++I+Q+Y  GFDLILGADIYIL
Sbjct: 129 LAAEKLEWGNSDHIDQILQRYSRGFDLILGADIYIL 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525657|ref|XP_003531440.1| PREDICTED: methyltransferase-like protein 21A-like isoform 1 [Glycine max]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 136/158 (86%), Gaps = 1/158 (0%)

Query: 11  VVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNP 70
           +VCLD SFF++D+YQLT FTFGSQ + LFCL SASTDFDLTGQLVWPGAML+N+YLSKN 
Sbjct: 18  IVCLDASFFVDDNYQLTKFTFGSQDIQLFCLHSASTDFDLTGQLVWPGAMLLNEYLSKNV 77

Query: 71  DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS-DA 129
           ++LQ  + +ELGSGVG+TGILCSRFC +V++TDHNEEV+KILKKNIE H+  EN  S   
Sbjct: 78  NLLQGCTAIELGSGVGITGILCSRFCHKVVMTDHNEEVIKILKKNIELHSCPENITSISH 137

Query: 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY 167
           GL   KLEWGN+DQIN+I+QK+PGGFD ILGADIYILY
Sbjct: 138 GLVAEKLEWGNTDQINEILQKHPGGFDFILGADIYILY 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186503322|ref|NP_001118394.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|330252799|gb|AEC07893.1| Putative methyltransferase family protein [Arabidopsis thaliana]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/175 (69%), Positives = 138/175 (78%), Gaps = 10/175 (5%)

Query: 1   MNREEDGGDE---------VVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLT 51
           M  E D G E         +VCL ESFFINDDYQLT FTFGS VL L+CLQSASTDFDLT
Sbjct: 1   MGSESDKGREAIVEEEEEEIVCL-ESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLT 59

Query: 52  GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKI 111
           GQLVWPGAMLMN YLS+N D+LQ  S+LELGSGVG+TG+LCS+FCR+V+ TDHN+EVLKI
Sbjct: 60  GQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKI 119

Query: 112 LKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166
           LKKNI+ H  S  P   A L  AKLEWGNSDQ+ +I++K+  GFDLILGADIYIL
Sbjct: 120 LKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADIYIL 174

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825909|ref|XP_002880837.1| hypothetical protein ARALYDRAFT_481556 [Arabidopsis lyrata subsp. lyrata] gi|297326676|gb|EFH57096.1| hypothetical protein ARALYDRAFT_481556 [Arabidopsis lyrata subsp. lyrata]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 137/167 (82%), Gaps = 7/167 (4%)

Query: 2   NREEDGGDEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAML 61
           N+EE+   E+VCL ESFFINDDYQLT FTFGS VL L+CLQSASTDFDLTGQLVWPGAML
Sbjct: 12  NQEEE---EIVCL-ESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLTGQLVWPGAML 67

Query: 62  MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTS 121
           MN YLS+N D+LQ  S+LELGSGVG+TG+LCS+FCR+V+ TDHN+E   ILKKNIE H  
Sbjct: 68  MNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDE---ILKKNIELHGH 124

Query: 122 SENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN 168
           S  PN  A L  AKLEWGNSD + +I+QK+  GFDLILGADIYIL N
Sbjct: 125 SSGPNPSAELEAAKLEWGNSDHLGEILQKHNDGFDLILGADIYILMN 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186503314|ref|NP_180249.4| Putative methyltransferase family protein [Arabidopsis thaliana] gi|186503318|ref|NP_001118393.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|330252797|gb|AEC07891.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|330252798|gb|AEC07892.1| Putative methyltransferase family protein [Arabidopsis thaliana]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/172 (68%), Positives = 135/172 (78%), Gaps = 10/172 (5%)

Query: 1   MNREEDGGDE---------VVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLT 51
           M  E D G E         +VCL ESFFINDDYQLT FTFGS VL L+CLQSASTDFDLT
Sbjct: 1   MGSESDKGREAIVEEEEEEIVCL-ESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLT 59

Query: 52  GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKI 111
           GQLVWPGAMLMN YLS+N D+LQ  S+LELGSGVG+TG+LCS+FCR+V+ TDHN+EVLKI
Sbjct: 60  GQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKI 119

Query: 112 LKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163
           LKKNI+ H  S  P   A L  AKLEWGNSDQ+ +I++K+  GFDLILGADI
Sbjct: 120 LKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADI 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444849|ref|XP_004140186.1| PREDICTED: methyltransferase-like protein 22-like [Cucumis sativus] gi|449481004|ref|XP_004156053.1| PREDICTED: methyltransferase-like protein 21A-like [Cucumis sativus]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 133/154 (86%)

Query: 10  EVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKN 69
           ++VCLD SFF+N+DYQLTTFTFGS  + LFCLQSASTDFDLTGQLVWPGA+LMN+YLS++
Sbjct: 9   DIVCLDPSFFMNNDYQLTTFTFGSHEIELFCLQSASTDFDLTGQLVWPGALLMNNYLSQH 68

Query: 70  PDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA 129
             +LQ  SI+ELGSGVG+TGILCS+FC +V+LTDHNEEVLKILKKNIE H S E+  + A
Sbjct: 69  AHLLQGCSIIELGSGVGITGILCSKFCHKVVLTDHNEEVLKILKKNIELHASPESLGNSA 128

Query: 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163
            LA  KLEWGNSDQI +++ K+ GGFDLILGADI
Sbjct: 129 ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26449997|dbj|BAC42119.1| unknown protein [Arabidopsis thaliana]

 Score =  238 bits (606), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 135/172 (78%), Gaps = 10/172 (5%)

Query: 1   MNREEDGGDE---------VVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLT 51
           M  E D G E         +VCL ESFFINDDYQLT FTFGS VL L+CLQSASTDFDLT
Sbjct: 1   MGSESDKGREAIVEEEEEEIVCL-ESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLT 59

Query: 52  GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKI 111
           GQLVWPGAMLMN YLS+N D+LQ  S+LELGSGVG+TG+LCS+FCR+V+ TDHN+EVLKI
Sbjct: 60  GQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKI 119

Query: 112 LKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163
           LKKNI+ H  S  P   A L  AKLEWGNSDQ+ +I++K+  GFDLILGA+I
Sbjct: 120 LKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGAEI 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525659|ref|XP_003531441.1| PREDICTED: methyltransferase-like protein 21A-like isoform 2 [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 131/153 (85%), Gaps = 2/153 (1%)

Query: 11  VVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNP 70
           +VCLD SFF++D+YQLT FTFGSQ + LFCL SASTDFDLTGQLVWPGAML+N+YLSKN 
Sbjct: 18  IVCLDASFFVDDNYQLTKFTFGSQDIQLFCLHSASTDFDLTGQLVWPGAMLLNEYLSKNV 77

Query: 71  DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG 130
           ++LQ  + +ELGSGVG+TGILCSRFC +V++TDHNEEV+KILKKNIE H+  EN  S + 
Sbjct: 78  NLLQGCTAIELGSGVGITGILCSRFCHKVVMTDHNEEVIKILKKNIELHSCPENITSIS- 136

Query: 131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163
               KLEWGN+DQIN+I+QK+PGGFD ILGADI
Sbjct: 137 -HAEKLEWGNTDQINEILQKHPGGFDFILGADI 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2039538	256	AT2G26810 "AT2G26810" [Arabido	0.877	0.617	0.723	8.1e-60
RGD|1311824	218	Mettl21a "methyltransferase li	0.694	0.573	0.326	1e-11
TAIR|locus:2057756	565	AT2G26200 [Arabidopsis thalian	0.622	0.198	0.324	1.2e-11
DICTYBASE|DDB_G0281059	355	DDB_G0281059 "methyltransferas	0.638	0.323	0.283	5.6e-11
MGI|MGI:1914349	218	Mettl21a "methyltransferase li	0.694	0.573	0.305	5.8e-11
UNIPROTKB|A4FV42	218	METTL21A "Protein-lysine methy	0.7	0.577	0.307	2e-10
UNIPROTKB|Q8WXB1	218	METTL21A "Protein-lysine methy	0.7	0.577	0.307	2e-10
ZFIN|ZDB-GENE-041010-160	317	fam86a "family with sequence s	0.8	0.454	0.310	3.2e-10
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.572	0.472	0.333	8.4e-10
MGI|MGI:1917761	335	Fam86 "family with sequence si	0.85	0.456	0.284	1.3e-09

TAIR|locus:2039538 AT2G26810 "AT2G26810" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 115/159 (72%), Positives = 134/159 (84%)

Query:     5 EDGGDEVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMND 64
             E+  +E+VCL ESFFINDDYQLT FTFGS VL L+CLQSASTDFDLTGQLVWPGAMLMN 
Sbjct:    14 EEEEEEIVCL-ESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLTGQLVWPGAMLMNG 72

Query:    65 YLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSEN 124
             YLS+N D+LQ  S+LELGSGVG+TG+LCS+FCR+V+ TDHN+EVLKILKKNI+ H  S  
Sbjct:    73 YLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKILKKNIDLHGHSSG 132

Query:   125 PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163
             P   A L  AKLEWGNSDQ+ +I++K+  GFDLILGADI
Sbjct:   133 PKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADI 171

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 47/144 (32%), Positives = 72/144 (50%)

Query:    26 LTTFTFGSQVLHLFCLQSASTDFDLTG--QLVWPGAMLMNDYLSKNPDVLQASSILELGS 83
             L TF+F +  + +        D+   G   +VW  A++++ YL      L+  S +ELG+
Sbjct:    21 LATFSFANHTIQI------RQDWGRLGVAAVVWDAAIVLSTYLEMGAVELRGCSAVELGA 74

Query:    84 GVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG-NSD 142
             G G+ GI+ +     V +TD  +  L+ LK N+E +     P+    + V +L WG N D
Sbjct:    75 GTGLVGIVAALLGAHVTITDR-KVALEFLKSNVEANLP---PHIQPKVVVKELTWGQNLD 130

Query:   143 QINKIIQKYPGGFDLILGADIYIL 166
               +      PG FDLILGADI  L
Sbjct:   131 SFS------PGEFDLILGADIIYL 148

GO:0006479 "protein methylation" evidence=ISO

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

TAIR|locus:2057756 AT2G26200 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 38/117 (32%), Positives = 63/117 (53%)

Query:    51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSG-VGVTGILCSRFCREVLLTDHNEEVL 109
             TG ++W  A LM   L +NP+++    +LELG G  G+  ++ +R    V+ TD + + L
Sbjct:   353 TGLMLWESARLMASVLDRNPNIVSGKRVLELGCGCTGICSMVAARSANLVVATDADTKAL 412

Query:   110 KILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI-YI 165
              +L +NI  +  S        L  + LEWGN + I  I +    GF++I+G D+ Y+
Sbjct:   413 TLLTENITMNLQSSLLGK---LKTSVLEWGNKEHIESIKRLACEGFEVIMGTDVTYV 466

GO:0005634 "nucleus" evidence=ISM

DICTYBASE|DDB_G0281059 DDB_G0281059 "methyltransferase type 12 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 158 (60.7 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 36/127 (28%), Positives = 66/127 (51%)

Query:    48 FD--LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHN 105
             FD    G  VW   +    ++ +N  + Q   +LELGSG+GV G +    C+ VL+TD+ 
Sbjct:   169 FDEVFVGWRVWEAGIGFGKWVLENKQIFQGKEVLELGSGLGVAGFMAGLICKSVLMTDYT 228

Query:   106 EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI 165
              +++  LK N++   +S  P       V  L+W N D+  K     P  +D+++G+++  
Sbjct:   229 PKLVSALKDNLK--INSRIPEIKKACTVQALDWVN-DKAPK-----PFHYDIVIGSEV-- 278

Query:   166 LYNRSLL 172
             +Y+  ++
Sbjct:   279 IYDEKIV 285

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 44/144 (30%), Positives = 73/144 (50%)

Query:    26 LTTFTFGSQVLHLFCLQSASTDFDLTG--QLVWPGAMLMNDYLSKNPDVLQASSILELGS 83
             L TF+F +  + +        D+   G   +VW  A++++ YL      L+  S +ELG+
Sbjct:    21 LATFSFANHTIQI------RQDWRQLGVAAVVWDAAVVLSMYLEMGAVELRGCSAVELGA 74

Query:    84 GVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143
             G G+ GI+ +    +V +TD  +  L+ LK N+E +     P+      V +L WG +  
Sbjct:    75 GTGLVGIVAALLGAQVTITDR-KVALEFLKSNVEANLP---PHIQPKAVVKELTWGQN-- 128

Query:   144 INKIIQKY-PGGFDLILGADIYIL 166
                 ++ + PG FDLILGAD+  L
Sbjct:   129 ----LESFSPGEFDLILGADVIYL 148

GO:0005575 "cellular_component" evidence=ND

GO:0006479 "protein methylation" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|A4FV42 METTL21A "Protein-lysine methyltransferase METTL21A" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 44/143 (30%), Positives = 70/143 (48%)

Query:    26 LTTFTFGSQVLHLFCLQSASTDFDLTG--QLVWPGAMLMNDYLSKNPDVLQASSILELGS 83
             L TF+F +  + +        D+   G   +VW  A+++  YL      L+  S +ELG+
Sbjct:    21 LATFSFANHTIQI------RQDWKQLGVAAVVWDAAVVLATYLEMGTVELRGCSAVELGA 74

Query:    84 GVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143
             G G+ GI+ +     V +TD  +  L+ LK N++ +     P+      V +L WG +  
Sbjct:    75 GTGLVGIVAALLGAHVTITDR-KVALEFLKSNVQANLP---PHIQPKAVVKELTWGQN-- 128

Query:   144 INKIIQKYPGGFDLILGADIYIL 166
             + +     PG FDLILGADI  L
Sbjct:   129 LGRFS---PGEFDLILGADIIYL 148

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0006479 "protein methylation" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 44/143 (30%), Positives = 70/143 (48%)

Query:    26 LTTFTFGSQVLHLFCLQSASTDFDLTG--QLVWPGAMLMNDYLSKNPDVLQASSILELGS 83
             L TF+F +  + +        D+   G   +VW  A++++ YL      L+  S +ELG+
Sbjct:    21 LATFSFANHTIQI------RQDWRHLGVAAVVWDAAIVLSTYLEMGAVELRGRSAVELGA 74

Query:    84 GVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143
             G G+ GI+ +     V +TD  +  L+ LK N++ +     P+      V +L WG +  
Sbjct:    75 GTGLVGIVAALLGAHVTITDR-KVALEFLKSNVQANLP---PHIQTKTVVKELTWGQN-- 128

Query:   144 INKIIQKYPGGFDLILGADIYIL 166
                +    PG FDLILGADI  L
Sbjct:   129 ---LGSFSPGEFDLILGADIIYL 148

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0006479 "protein methylation" evidence=IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

ZFIN|ZDB-GENE-041010-160 fam86a "family with sequence similarity 86, member A" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 49/158 (31%), Positives = 81/158 (51%)

Query:    10 EVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKN 69
             EV+C  E       Y L T    S   ++  L S  T    TG + W  A+ + ++  +N
Sbjct:    95 EVMCAQEEDLCFKTYLLPTGDAVSLAENV-ALISQGT----TGLVTWEAALYLAEWTLEN 149

Query:    70 PDVLQASSILELGSGVGVTGILCSRFCR--EVLLTDHNEEVLKILKKNIEHHTSSENPNS 127
               + +  ++LELGSG+G+TGI+  R C   + + +D ++ VL+ LK NI +  +    N 
Sbjct:   150 AHIFKNKTVLELGSGIGLTGIVLCRSCSLTKYIFSDCHQTVLQRLKDNITNCLA----NC 205

Query:   128 DAGLAVAKLEWGN-SD-QINKIIQKYPGGFDLILGADI 163
             D G++V +L+W N SD Q+ +I        D++   DI
Sbjct:   206 D-GVSVEELDWENVSDEQLQRIQANTIIAADVVYDPDI 242

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 38/114 (33%), Positives = 60/114 (52%)

Query:    54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILK 113
             +VW  A+++  +L      L+   ++ELG+G G+ GI+ +     V +TD  E  L+ L 
Sbjct:    45 VVWDAAVVLCMFLEMGKVDLKGKRVIELGAGTGLVGIVAALLGANVTITDR-EPALEFLT 103

Query:   114 KNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP-GGFDLILGADIYIL 166
              N+  H +       A + V++L WG +      +  YP GG+DLILGADI  L
Sbjct:   104 ANV--HENIPQGRQKA-VQVSELTWGEN------LDLYPQGGYDLILGADIVYL 148

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1917761 Fam86 "family with sequence similarity 86" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 48/169 (28%), Positives = 84/169 (49%)

Query:    10 EVVCLDESFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKN 69
             EV+   ES   +  Y L +   G+ V       +A      TG + W  A+ + ++  +N
Sbjct:    98 EVLMTQESTQCHRSYLLPS---GNSVT--LSESTAIVSHGTTGLVTWDAALYLAEWAIEN 152

Query:    70 PDVLQASSILELGSGVGVTGI-LCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNS 127
             P      +ILELGSG G+TG+ +C   C R  + +D + +VL+ L+ N+  +  S  P++
Sbjct:   153 PAAFTDRTILELGSGAGLTGLAICKACCPRAYIFSDCHAQVLEQLRGNVLLNGFSLEPHT 212

Query:   128 --DAG---LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSL 171
               DAG   + VA+L+W   D++    Q      D+++ AD+   +  +L
Sbjct:   213 PIDAGSSKVTVAQLDW---DEVTAS-QLSAFQADVVIAADVLYCWEMTL 257

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	3e-11
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	5e-04
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	0.002
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	0.002

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 17/120 (14%)

Query: 52  GQLVWPGAMLMNDYLSK----NPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHN 105
           G  VW  A++++ YL        + L   ++LELGSG G+ GI  +       V +TD  
Sbjct: 18  GGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDL- 76

Query: 106 EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGAD-IY 164
           EE ++++KKNIE +      +S        L+WG  D  + +    P   DLIL AD +Y
Sbjct: 77  EEAIELMKKNIELN----GLSSKV--TAKVLDWGE-DLPDDVFD--PHPVDLILAADCVY 127

Length = 170

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 21/117 (17%)

Query: 56  WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKK 114
           W G  ++  Y+  +P+ ++   +L+LG+G G+  I  +R    EV+  D    +   L++
Sbjct: 61  WAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAAD----IDPWLEQ 116

Query: 115 NIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSL 171
            I       N  ++ G+++           + I    P  FDL+L  D++  YN + 
Sbjct: 117 AIRL-----NAAAN-GVSILFTH------ADLIGS--PPAFDLLLAGDLF--YNHTE 157

Length = 218

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 21/105 (20%)

Query: 57  PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKK 114
            G+ L+  +L K         +L+LG G GV G   ++     EV + D N   L+  + 
Sbjct: 18  IGSRLLLSHLPKPL----GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARA 73

Query: 115 NIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLIL 159
           N+  +          GL   ++ W +           PG FDLI+
Sbjct: 74  NLAAN----------GLENGEVFWSDLYS-----AVEPGKFDLII 103

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 66  LSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKN 115
           L  N   L+   +LE+G+G G+  I      + +L TD N   +K L++N
Sbjct: 11  LEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELREN 60

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.92
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.68
COG3897	218	Predicted methyltransferase [General function pred	99.66
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.64
COG2890	280	HemK Methylase of polypeptide chain release factor	99.6
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.58
COG4123	248	Predicted O-methyltransferase [General function pr	99.58
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.58
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.57
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.57
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.54
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.53
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.53
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.5
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.49
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.48
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.48
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.47
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.47
PRK11207	197	tellurite resistance protein TehB; Provisional	99.45
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.45
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.44
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.44
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.44
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.43
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.42
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.42
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.41
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.41
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.41
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.41
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.39
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.38
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.38
PRK14967	223	putative methyltransferase; Provisional	99.36
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.35
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.35
PLN02244	340	tocopherol O-methyltransferase	99.35
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.35
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.35
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.34
PLN02672	1082	methionine S-methyltransferase	99.34
PRK12335	287	tellurite resistance protein TehB; Provisional	99.34
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.33
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.32
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.31
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.31
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.31
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.3
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.3
KOG2904	328	consensus Predicted methyltransferase [General fun	99.3
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.3
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.3
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.29
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.29
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.29
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.29
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.29
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.29
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.28
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.28
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.27
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.27
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.26
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.26
PRK14968	188	putative methyltransferase; Provisional	99.26
PLN02336	475	phosphoethanolamine N-methyltransferase	99.26
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.25
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.25
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.25
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.25
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.25
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.24
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.24
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.23
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.23
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.23
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.21
PRK06202	232	hypothetical protein; Provisional	99.21
PHA03412	241	putative methyltransferase; Provisional	99.2
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.2
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.2
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.2
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.18
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.18
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.18
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.18
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.18
KOG1271	227	consensus Methyltransferases [General function pre	99.17
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.17
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.16
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.16
PRK08317	241	hypothetical protein; Provisional	99.16
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.16
PHA03411	279	putative methyltransferase; Provisional	99.15
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.15
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.15
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.15
PRK05785	226	hypothetical protein; Provisional	99.14
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.14
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.14
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.13
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.13
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.13
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.11
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.09
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.09
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.08
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.07
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.07
PLN02490	340	MPBQ/MSBQ methyltransferase	99.06
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.05
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.03
PRK04148	134	hypothetical protein; Provisional	98.99
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.99
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.99
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.98
PLN02336	475	phosphoethanolamine N-methyltransferase	98.98
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.97
PRK07402	196	precorrin-6B methylase; Provisional	98.97
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.96
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.95
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.95
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.94
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.94
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.92
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.92
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.91
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.91
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.91
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.9
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.9
PRK04266	226	fibrillarin; Provisional	98.89
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.89
PRK06922	677	hypothetical protein; Provisional	98.89
PLN03075	296	nicotianamine synthase; Provisional	98.88
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.87
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.85
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.85
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.84
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.83
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.83
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.83
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.83
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.82
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.81
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.79
KOG2920	282	consensus Predicted methyltransferase [General fun	98.79
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.79
PRK04457	262	spermidine synthase; Provisional	98.78
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.78
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.76
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.75
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.75
KOG3010	261	consensus Methyltransferase [General function pred	98.73
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.71
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.7
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.7
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.7
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.69
TIGR03438	301	probable methyltransferase. This model represents	98.69
COG4122	219	Predicted O-methyltransferase [General function pr	98.68
PLN02476	278	O-methyltransferase	98.68
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.67
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.65
TIGR00438	188	rrmJ cell division protein FtsJ.	98.6
KOG4300	252	consensus Predicted methyltransferase [General fun	98.55
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.52
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.51
PTZ00146	293	fibrillarin; Provisional	98.51
PRK00811	283	spermidine synthase; Provisional	98.49
PRK03612	521	spermidine synthase; Provisional	98.46
COG2520	341	Predicted methyltransferase [General function pred	98.46
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.46
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.41
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.38
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.38
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.37
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.37
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.37
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.37
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.35
PRK01581	374	speE spermidine synthase; Validated	98.33
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.33
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.29
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.25
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.24
PLN02366	308	spermidine synthase	98.24
PRK10742	250	putative methyltransferase; Provisional	98.22
COG4076	252	Predicted RNA methylase [General function predicti	98.22
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.16
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.15
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.09
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.07
PF13679	141	Methyltransf_32: Methyltransferase domain	98.03
COG3129	292	Predicted SAM-dependent methyltransferase [General	98.03
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.02
COG2521	287	Predicted archaeal methyltransferase [General func	97.98
KOG2730	263	consensus Methylase [General function prediction o	97.93
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.92
KOG2899	288	consensus Predicted methyltransferase [General fun	97.88
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.88
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.88
PLN02823	336	spermine synthase	97.88
PHA01634	156	hypothetical protein	97.84
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.82
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.8
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.76
KOG2497	262	consensus Predicted methyltransferase [General fun	97.75
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.74
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.7
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.66
KOG2361	264	consensus Predicted methyltransferase [General fun	97.65
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.62
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.59
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.56
KOG2078	495	consensus tRNA modification enzyme [RNA processing	97.55
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.53
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.52
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.51
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.32
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.27
KOG2940	325	consensus Predicted methyltransferase [General fun	97.27
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.26
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.22
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.22
PRK11524	284	putative methyltransferase; Provisional	97.21
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.2
PRK00536	262	speE spermidine synthase; Provisional	97.19
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.17
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.15
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.09
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.06
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.06
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.06
PRK13699	227	putative methylase; Provisional	97.03
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.03
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.02
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.01
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.93
COG0286	489	HsdM Type I restriction-modification system methyl	96.9
KOG1227	351	consensus Putative methyltransferase [General func	96.89
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.86
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.83
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.72
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.62
KOG2912	419	consensus Predicted DNA methylase [Function unknow	96.57
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.52
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.48
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.27
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.19
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.12
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.11
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.02
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.87
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.78
PLN02232	160	ubiquinone biosynthesis methyltransferase	95.73
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.7
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.67
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	95.66
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.62
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	95.48
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.31
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.08
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.01
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.99
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.97
COG1568	354	Predicted methyltransferases [General function pre	94.88
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	94.76
COG1565	370	Uncharacterized conserved protein [Function unknow	94.64
PRK08339	263	short chain dehydrogenase; Provisional	94.61
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.52
PRK10458	467	DNA cytosine methylase; Provisional	94.43
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.26
PRK07102	243	short chain dehydrogenase; Provisional	94.25
PRK05867	253	short chain dehydrogenase; Provisional	94.24
PRK06125	259	short chain dehydrogenase; Provisional	94.2
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.18
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.07
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.97
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	93.97
PRK08862	227	short chain dehydrogenase; Provisional	93.91
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.69
PRK06139	330	short chain dehydrogenase; Provisional	93.68
PRK06172	253	short chain dehydrogenase; Provisional	93.58
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.53
PRK07062	265	short chain dehydrogenase; Provisional	93.46
PRK07035	252	short chain dehydrogenase; Provisional	93.35
PRK05876	275	short chain dehydrogenase; Provisional	93.28
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.24
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.23
PRK06949	258	short chain dehydrogenase; Provisional	93.21
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	93.14
PRK05854	313	short chain dehydrogenase; Provisional	93.14
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	93.11
PRK07097	265	gluconate 5-dehydrogenase; Provisional	93.1
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.08
PRK07063	260	short chain dehydrogenase; Provisional	93.07
COG0863	302	DNA modification methylase [DNA replication, recom	93.02
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	92.99
PRK07890	258	short chain dehydrogenase; Provisional	92.96
PRK08085	254	gluconate 5-dehydrogenase; Provisional	92.82
PRK08589	272	short chain dehydrogenase; Validated	92.78
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	92.71
PRK07478	254	short chain dehydrogenase; Provisional	92.57
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.45
PRK09242	257	tropinone reductase; Provisional	92.44
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	92.41
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	92.33
PRK08267	260	short chain dehydrogenase; Provisional	92.32
PRK06720	169	hypothetical protein; Provisional	92.28
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.16
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	92.12
PRK07576	264	short chain dehydrogenase; Provisional	92.1
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.04
PRK07791	286	short chain dehydrogenase; Provisional	92.02
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	91.94
PRK06194	287	hypothetical protein; Provisional	91.9
PRK05866	293	short chain dehydrogenase; Provisional	91.89
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	91.87
PRK08340	259	glucose-1-dehydrogenase; Provisional	91.85
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	91.77
PRK07814	263	short chain dehydrogenase; Provisional	91.76
PRK08643	256	acetoin reductase; Validated	91.75
PRK05872	296	short chain dehydrogenase; Provisional	91.61
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.58
PRK07109	334	short chain dehydrogenase; Provisional	91.55
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.53
PRK07904	253	short chain dehydrogenase; Provisional	91.5
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.5
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.43
PRK08303	305	short chain dehydrogenase; Provisional	91.41
PRK12548	289	shikimate 5-dehydrogenase; Provisional	91.4
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	91.37
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.32
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	91.31
PRK07677	252	short chain dehydrogenase; Provisional	91.31
COG0300	265	DltE Short-chain dehydrogenases of various substra	91.29
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	91.25
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.19
PRK08277	278	D-mannonate oxidoreductase; Provisional	91.11
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	91.04
KOG0725	270	consensus Reductases with broad range of substrate	90.96
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	90.87
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	90.82
PRK09072	263	short chain dehydrogenase; Provisional	90.81
PRK09291	257	short chain dehydrogenase; Provisional	90.77
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	90.75
PRK07831	262	short chain dehydrogenase; Provisional	90.69
PRK08265	261	short chain dehydrogenase; Provisional	90.68
KOG3115	249	consensus Methyltransferase-like protein [General	90.67
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.5
PRK07326	237	short chain dehydrogenase; Provisional	90.31
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	90.3
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	90.23
PRK07453	322	protochlorophyllide oxidoreductase; Validated	90.12
PRK07774	250	short chain dehydrogenase; Provisional	90.1
PRK06197	306	short chain dehydrogenase; Provisional	90.1
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.04
PRK08226	263	short chain dehydrogenase; Provisional	89.98
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	89.97
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	89.95
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.92
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.89
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	89.88
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	89.86
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	89.8
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	89.79
PRK09186	256	flagellin modification protein A; Provisional	89.76
PRK12829	264	short chain dehydrogenase; Provisional	89.76
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.7
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	89.66
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.65
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	89.64
PRK05650	270	short chain dehydrogenase; Provisional	89.6
PRK08251	248	short chain dehydrogenase; Provisional	89.48
PRK07024	257	short chain dehydrogenase; Provisional	89.47
TIGR00497	501	hsdM type I restriction system adenine methylase (	89.43
COG1255	129	Uncharacterized protein conserved in archaea [Func	89.39
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	89.35
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.28
PRK12939	250	short chain dehydrogenase; Provisional	89.27
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.25
PRK06057	255	short chain dehydrogenase; Provisional	89.23
PRK05599	246	hypothetical protein; Provisional	89.15
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	89.13
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	89.09
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	89.08
PRK06181	263	short chain dehydrogenase; Provisional	89.06
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.03
PRK08703	239	short chain dehydrogenase; Provisional	88.99
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	88.93
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	88.91
PRK06138	252	short chain dehydrogenase; Provisional	88.8
PLN03209	576	translocon at the inner envelope of chloroplast su	88.76
PRK06196	315	oxidoreductase; Provisional	88.76
PRK05875	276	short chain dehydrogenase; Provisional	88.63
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	88.56
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	88.52
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	88.46
PLN02253	280	xanthoxin dehydrogenase	88.46
PRK15116	268	sulfur acceptor protein CsdL; Provisional	88.45
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	88.39
PLN02780	320	ketoreductase/ oxidoreductase	88.34
PLN02740	381	Alcohol dehydrogenase-like	88.33
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	88.32
PRK06940	275	short chain dehydrogenase; Provisional	88.28
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	88.19
PRK06701	290	short chain dehydrogenase; Provisional	88.19
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	88.18
PRK07454	241	short chain dehydrogenase; Provisional	88.18
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	88.14
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	87.98
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	87.92
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	87.9
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	87.83
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.63
PRK07074	257	short chain dehydrogenase; Provisional	87.61
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	87.6
PRK11730	715	fadB multifunctional fatty acid oxidation complex	87.53
PRK07067	257	sorbitol dehydrogenase; Provisional	87.49
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	87.42
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	87.38
PRK06198	260	short chain dehydrogenase; Provisional	87.36
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.26
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	87.24
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	87.14
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	87.06
PRK07825	273	short chain dehydrogenase; Provisional	86.98
PRK07060	245	short chain dehydrogenase; Provisional	86.97
PRK08628	258	short chain dehydrogenase; Provisional	86.92
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	86.67
PRK12743	256	oxidoreductase; Provisional	86.61
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	86.59
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	86.57
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	86.49
PRK06484	520	short chain dehydrogenase; Validated	86.48
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	86.44
PRK08324	681	short chain dehydrogenase; Validated	86.42
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	86.37
PRK06114	254	short chain dehydrogenase; Provisional	86.26
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	86.23
PRK05993	277	short chain dehydrogenase; Provisional	86.1
COG0569	225	TrkA K+ transport systems, NAD-binding component [	86.08
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	85.88
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	85.78
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	85.73
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	85.67
PRK07201	657	short chain dehydrogenase; Provisional	85.65
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	85.65
PRK08328	231	hypothetical protein; Provisional	85.56
PRK05717	255	oxidoreductase; Validated	85.53
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	85.5
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	85.43
PRK12828	239	short chain dehydrogenase; Provisional	85.39
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	85.39
PRK08278	273	short chain dehydrogenase; Provisional	85.37
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.35
PRK06841	255	short chain dehydrogenase; Provisional	85.21
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	85.07
PRK06484	520	short chain dehydrogenase; Validated	85.06
PRK06914	280	short chain dehydrogenase; Provisional	85.05
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	85.02
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.99
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	84.89
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	84.84
PRK05855	582	short chain dehydrogenase; Validated	84.73
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	84.72
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	84.42
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	84.32
PRK05884	223	short chain dehydrogenase; Provisional	84.25
PRK08936	261	glucose-1-dehydrogenase; Provisional	84.19
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	84.18
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	84.15
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	84.1
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	84.09
PRK07806	248	short chain dehydrogenase; Provisional	84.07
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	84.0
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	83.95
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	83.95
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	83.8
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	83.68
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	83.65
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.59
PRK07832	272	short chain dehydrogenase; Provisional	83.47
PRK06180	277	short chain dehydrogenase; Provisional	83.43
PRK07775	274	short chain dehydrogenase; Provisional	83.42
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	83.39
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	83.38
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	83.37
PRK06101	240	short chain dehydrogenase; Provisional	83.36
PRK06482	276	short chain dehydrogenase; Provisional	83.19
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	83.18
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	82.9
PLN02896	353	cinnamyl-alcohol dehydrogenase	82.79
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	82.75
PLN02827	378	Alcohol dehydrogenase-like	82.73
PRK12935	247	acetoacetyl-CoA reductase; Provisional	82.59

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.92  E-value=1.2e-24  Score=158.52  Aligned_cols=123  Identities=35%  Similarity=0.619  Sum_probs=78.4

Q ss_pred             CCcCceecchHHHHHHHHhhC------CCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           49 DLTGQLVWPGAMLMNDYLSKN------PDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        49 ~~~g~~~w~~~~~l~~~l~~~------~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ..+|.++||++..|++||.++      ....++++|||||||+|+.|+.+++.  +.+|++||+++ +++.++.|++.|+
T Consensus        14 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~   92 (173)
T PF10294_consen   14 DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG   92 (173)
T ss_dssp             ---------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred             cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence            367999999999999999984      45668899999999999999999998  67999999988 9999999999986


Q ss_pred             CCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          121 SSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .    ....++.+..++|++......   ....+||+|+++||+|+ ...+.+++++...
T Consensus        93 ~----~~~~~v~v~~L~Wg~~~~~~~---~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~l  145 (173)
T PF10294_consen   93 S----LLDGRVSVRPLDWGDELDSDL---LEPHSFDVILASDVLYDEELFEPLVRTLKRL  145 (173)
T ss_dssp             -----------EEEE--TTS-HHHHH---HS-SSBSEEEEES--S-GGGHHHHHHHHHHH
T ss_pred             c----cccccccCcEEEecCcccccc---cccccCCEEEEecccchHHHHHHHHHHHHHH
Confidence            2    124568899999998532111   13568999999999999 4555666665543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.68  E-value=8.1e-16  Score=111.76  Aligned_cols=101  Identities=24%  Similarity=0.313  Sum_probs=77.5

Q ss_pred             cCCcC-ceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC--eEEEecCCHHHHHHHHHHHHHhcCCCC
Q 030274           48 FDLTG-QLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR--EVLLTDHNEEVLKILKKNIEHHTSSEN  124 (180)
Q Consensus        48 ~~~~g-~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~--~V~~~D~~~~~l~~~~~n~~~n~~~~~  124 (180)
                      ++.|. ..+-+++..|++++...    ++.+|||+|||+|.+|+.+++.+.  +|+++|+++.+++.+++|++.|+..  
T Consensus         8 ~gvFs~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--   81 (170)
T PF05175_consen    8 PGVFSPPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE--   81 (170)
T ss_dssp             TTSTTTTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT--
T ss_pred             CCeeCCCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc--
Confidence            56666 33667889999999876    566899999999999999999764  5999999999999999999999732  


Q ss_pred             CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          125 PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                           ++.+...++...-        ...+||+|++|||++..
T Consensus        82 -----~v~~~~~d~~~~~--------~~~~fD~Iv~NPP~~~~  111 (170)
T PF05175_consen   82 -----NVEVVQSDLFEAL--------PDGKFDLIVSNPPFHAG  111 (170)
T ss_dssp             -----TEEEEESSTTTTC--------CTTCEEEEEE---SBTT
T ss_pred             -----ccccccccccccc--------cccceeEEEEccchhcc
Confidence                 2556665555431        24799999999997663

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.66  E-value=1.2e-16  Score=115.45  Aligned_cols=109  Identities=20%  Similarity=0.407  Sum_probs=91.1

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPN  126 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~  126 (180)
                      ++.++...|.+...+++|+..+++..++++|||+|+|+|+.+++.++.| +.|+++|+.+..+..++.|++.|+.     
T Consensus        53 pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-----  127 (218)
T COG3897          53 PPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-----  127 (218)
T ss_pred             CchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-----
Confidence            4558889999999999999999999999999999999999999999998 5899999999999999999999973     


Q ss_pred             CCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC-chhhHH
Q 030274          127 SDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN-RSLLMT  174 (180)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-~~~l~~  174 (180)
                         .+.+...+...          .+..||+|+++|++|.+. ...+++
T Consensus       128 ---~i~~~~~d~~g----------~~~~~Dl~LagDlfy~~~~a~~l~~  163 (218)
T COG3897         128 ---SILFTHADLIG----------SPPAFDLLLAGDLFYNHTEADRLIP  163 (218)
T ss_pred             ---eeEEeeccccC----------CCcceeEEEeeceecCchHHHHHHH
Confidence               24444444332          256899999999999954 444444

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=9.9e-17  Score=112.49  Aligned_cols=123  Identities=27%  Similarity=0.447  Sum_probs=94.8

Q ss_pred             cCCcCce-ecchHHHHHHHHhhCCCCCCCCeEEEeCCc-CChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCC
Q 030274           48 FDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSG-VGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSE  123 (180)
Q Consensus        48 ~~~~g~~-~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G-~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~  123 (180)
                      ++.||.+ +||+.+.|+.++.+.+..+.+++|||||.| +|+.|+++|...  +.|..||.+++.++..++....|..+.
T Consensus         2 fdntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~   81 (201)
T KOG3201|consen    2 FDNTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS   81 (201)
T ss_pred             cCCCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc
Confidence            5678877 999999999999999988899999999999 499999999874  799999999999999998888874221


Q ss_pred             CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          124 NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                          ..+  +..+.|......+.   .....||+|+++||+|. +.++.|++++...
T Consensus        82 ----~ts--c~vlrw~~~~aqsq---~eq~tFDiIlaADClFfdE~h~sLvdtIk~l  129 (201)
T KOG3201|consen   82 ----LTS--CCVLRWLIWGAQSQ---QEQHTFDIILAADCLFFDEHHESLVDTIKSL  129 (201)
T ss_pred             ----cce--ehhhHHHHhhhHHH---HhhCcccEEEeccchhHHHHHHHHHHHHHHH
Confidence                122  23344443222211   23568999999999877 6778888877643

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=9.5e-15  Score=113.85  Aligned_cols=118  Identities=24%  Similarity=0.286  Sum_probs=80.4

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEE
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLL  101 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~  101 (180)
                      |-.....|.+..+.+...          =..--|.++.|.+.+......... +|||||||||.+++.+++.+  ++|++
T Consensus        71 yi~g~~~f~gl~~~v~~~----------vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a  139 (280)
T COG2890          71 YILGSAEFGGLRFKVDEG----------VLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIA  139 (280)
T ss_pred             HhhccCeecceeeeeCCC----------ceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEE
Confidence            334445677766666510          011223456677765422211122 79999999999999999876  49999


Q ss_pred             ecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          102 TDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       102 ~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      +|+|+.+++.|++|+..|+.       .++.....+|...         ..++||+|++||||-...
T Consensus       140 ~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~dlf~~---------~~~~fDlIVsNPPYip~~  190 (280)
T COG2890         140 VDISPDALALARENAERNGL-------VRVLVVQSDLFEP---------LRGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             EECCHHHHHHHHHHHHHcCC-------ccEEEEeeecccc---------cCCceeEEEeCCCCCCCc
Confidence            99999999999999999972       2233333365543         245999999999987754

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=9e-15  Score=113.03  Aligned_cols=108  Identities=22%  Similarity=0.299  Sum_probs=79.3

Q ss_pred             CeEEEEEeeeccCCCcCCcCce-ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHH
Q 030274           33 SQVLHLFCLQSASTDFDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVL  109 (180)
Q Consensus        33 ~~~~~i~~~~~~~~~~~~~g~~-~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l  109 (180)
                      +.++.+.      +.++.|... +-.++.+|.+.+...    .+.+|||+|||.|.+|+.+++..  .+++.+|.|..++
T Consensus       126 ~~~~~~~------t~pGVFS~~~lD~GS~lLl~~l~~~----~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av  195 (300)
T COG2813         126 GHELTFK------TLPGVFSRDKLDKGSRLLLETLPPD----LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV  195 (300)
T ss_pred             cCceEEE------eCCCCCcCCCcChHHHHHHHhCCcc----CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH
Confidence            5667777      456666543 777888887776543    23399999999999999999975  6999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          110 KILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       110 ~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +.+|+|+..|+..       +..+.   +.+.  .+    ...++||+||+|||++.
T Consensus       196 ~~ar~Nl~~N~~~-------~~~v~---~s~~--~~----~v~~kfd~IisNPPfh~  236 (300)
T COG2813         196 ESARKNLAANGVE-------NTEVW---ASNL--YE----PVEGKFDLIISNPPFHA  236 (300)
T ss_pred             HHHHHhHHHcCCC-------ccEEE---Eecc--cc----cccccccEEEeCCCccC
Confidence            9999999999732       11111   1111  11    12448999999999986

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.58  E-value=1.2e-14  Score=110.06  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=79.3

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      |.+.--.+.+|+.|..-.    ..++|||||||+|.+++++|+. . ++++++|+++++.+.|++|++.|+      ...
T Consensus        26 ~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~------l~~   95 (248)
T COG4123          26 GFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP------LEE   95 (248)
T ss_pred             ccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc------chh
Confidence            555555788888887532    3679999999999999999987 3 799999999999999999999987      345


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCc
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNR  169 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~  169 (180)
                      ++++.+.|..+...     .....+||+|+||||+|....
T Consensus        96 ri~v~~~Di~~~~~-----~~~~~~fD~Ii~NPPyf~~~~  130 (248)
T COG4123          96 RIQVIEADIKEFLK-----ALVFASFDLIICNPPYFKQGS  130 (248)
T ss_pred             ceeEehhhHHHhhh-----cccccccCEEEeCCCCCCCcc
Confidence            66676655544321     112346999999999998443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.58  E-value=3.1e-14  Score=114.74  Aligned_cols=119  Identities=16%  Similarity=0.224  Sum_probs=84.3

Q ss_pred             EEEEEECCeEEEEEeeeccCCCcCCcCce-ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEe
Q 030274           26 LTTFTFGSQVLHLFCLQSASTDFDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLT  102 (180)
Q Consensus        26 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~-~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~  102 (180)
                      ..++.+.+..+.+.      +.++.|+.. +-.++.+|.+++...    .+.+|||||||+|.+++.+++.  ..+|+++
T Consensus       189 ~~~~~~~~~~~~~~------~~~gVFs~~~LD~GtrllL~~lp~~----~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v  258 (378)
T PRK15001        189 TVSWKLEGTDWTIH------NHANVFSRTGLDIGARFFMQHLPEN----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV  258 (378)
T ss_pred             eeEEEEcCceEEEE------ecCCccCCCCcChHHHHHHHhCCcc----cCCeEEEEeccccHHHHHHHHhCCCCEEEEE
Confidence            34666778788887      345555543 777788877776432    2359999999999999999886  4799999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          103 DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       103 D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      |.|+.+++.+++|++.|+...    ..++.   +.+.+.  +...   ...+||+|++|||++.
T Consensus       259 D~S~~Av~~A~~N~~~n~~~~----~~~v~---~~~~D~--l~~~---~~~~fDlIlsNPPfh~  310 (378)
T PRK15001        259 DESPMAVASSRLNVETNMPEA----LDRCE---FMINNA--LSGV---EPFRFNAVLCNPPFHQ  310 (378)
T ss_pred             ECCHHHHHHHHHHHHHcCccc----CceEE---EEEccc--cccC---CCCCEEEEEECcCccc
Confidence            999999999999999886210    01222   233332  1111   2358999999999875

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.57  E-value=2.1e-14  Score=112.24  Aligned_cols=94  Identities=21%  Similarity=0.312  Sum_probs=71.7

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSD  128 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~  128 (180)
                      .||.-..|.+....++|.+..  .++++|||+|||||+++++++++|+ +|+++|+++.+++.+++|++.|+..      
T Consensus       139 AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~------  210 (295)
T PF06325_consen  139 AFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE------  210 (295)
T ss_dssp             SS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T------
T ss_pred             cccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC------
Confidence            467777899999999988774  3678999999999999999999985 7999999999999999999999843      


Q ss_pred             CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcc
Q 030274          129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGAD  162 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d  162 (180)
                      .++.+.    ...+.       ...+||+|++|=
T Consensus       211 ~~~~v~----~~~~~-------~~~~~dlvvANI  233 (295)
T PF06325_consen  211 DRIEVS----LSEDL-------VEGKFDLVVANI  233 (295)
T ss_dssp             TCEEES----CTSCT-------CCS-EEEEEEES
T ss_pred             eeEEEE----Eeccc-------ccccCCEEEECC
Confidence            233321    11111       247899999874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.57  E-value=1.5e-14  Score=108.18  Aligned_cols=91  Identities=14%  Similarity=0.272  Sum_probs=72.7

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ..+++|||+|||.|.++..+|+.|++|+++|.++++++.|+..+..++             ..++|.... .+.+. ...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-------------v~i~y~~~~-~edl~-~~~  122 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-------------VNIDYRQAT-VEDLA-SAG  122 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-------------ccccchhhh-HHHHH-hcC
Confidence            478999999999999999999999999999999999999999999987             224444432 22221 223


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ++||+|+|.+++.| +++...+..+.+
T Consensus       123 ~~FDvV~cmEVlEHv~dp~~~~~~c~~  149 (243)
T COG2227         123 GQFDVVTCMEVLEHVPDPESFLRACAK  149 (243)
T ss_pred             CCccEEEEhhHHHccCCHHHHHHHHHH
Confidence            79999999999988 677666666554

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.54  E-value=8.2e-14  Score=105.61  Aligned_cols=124  Identities=30%  Similarity=0.387  Sum_probs=91.2

Q ss_pred             CCcCceecchHHHHHHHHhhCCC------CCC-----CCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHH
Q 030274           49 DLTGQLVWPGAMLMNDYLSKNPD------VLQ-----ASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        49 ~~~g~~~w~~~~~l~~~l~~~~~------~~~-----~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~  116 (180)
                      ..+..++|+++..++.++.....      ...     ..+|||||+|||+.|+.+|. .+++|+.+|. +..+..++.|.
T Consensus        50 ~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~  128 (248)
T KOG2793|consen   50 QGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNR  128 (248)
T ss_pred             cceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhh
Confidence            44678899999999998876544      112     34699999999999999998 5789999999 56777777776


Q ss_pred             HHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC-CcEEEEccccccC-CchhhHHHHHH
Q 030274          117 EHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG-FDLILGADIYILY-NRSLLMTSFFQ  178 (180)
Q Consensus       117 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fD~Ii~~d~~y~~-~~~~l~~~~~~  178 (180)
                      ..|+.... .....+.+..+.|++.......    ... +|+|+++||+|.+ ....+...+..
T Consensus       129 ~~~~~~l~-~~g~~v~v~~L~Wg~~~~~~~~----~~~~~DlilasDvvy~~~~~e~Lv~tla~  187 (248)
T KOG2793|consen  129 DKNNIALN-QLGGSVIVAILVWGNALDVSFR----LPNPFDLILASDVVYEEESFEGLVKTLAF  187 (248)
T ss_pred             hhhhhhhh-hcCCceeEEEEecCCcccHhhc----cCCcccEEEEeeeeecCCcchhHHHHHHH
Confidence            66543211 1234788999999998764443    233 9999999999994 55555555443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.53  E-value=6.4e-14  Score=94.52  Aligned_cols=76  Identities=21%  Similarity=0.324  Sum_probs=61.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||||||+|..++.+++  .+.+|+++|+++.+++.+++|+...+      ...++.+..-++ ...      ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~-~~~------~~~   67 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG------LSDRITFVQGDA-EFD------PDF   67 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT------TTTTEEEEESCC-HGG------TTT
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEECcc-ccC------ccc
Confidence            467999999999999999999  68999999999999999999996654      245677777776 111      123


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      ..+||+|++..
T Consensus        68 ~~~~D~v~~~~   78 (112)
T PF12847_consen   68 LEPFDLVICSG   78 (112)
T ss_dssp             SSCEEEEEECS
T ss_pred             CCCCCEEEECC
Confidence            56799999999

...

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=4e-14  Score=109.97  Aligned_cols=97  Identities=18%  Similarity=0.217  Sum_probs=73.9

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSD  128 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~  128 (180)
                      .||.-..|.+..-.++|.+...  ++++|||+|||+|+++++++++|+ +|+++|+++.+++.+++|+..|+...     
T Consensus       140 AFGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-----  212 (300)
T COG2264         140 AFGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-----  212 (300)
T ss_pred             ccCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----
Confidence            3566678888888888887754  788999999999999999999986 69999999999999999999998321     


Q ss_pred             CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcc
Q 030274          129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGAD  162 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d  162 (180)
                          ...........     ....++||+|++|=
T Consensus       213 ----~~~~~~~~~~~-----~~~~~~~DvIVANI  237 (300)
T COG2264         213 ----LVQAKGFLLLE-----VPENGPFDVIVANI  237 (300)
T ss_pred             ----hhhcccccchh-----hcccCcccEEEehh
Confidence                11222222211     01235899999984

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.50  E-value=4.6e-13  Score=106.29  Aligned_cols=104  Identities=16%  Similarity=0.028  Sum_probs=71.5

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      ++.|.+..-..+..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.++.+++.+++|++.++.      
T Consensus       147 ~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------  220 (315)
T PRK03522        147 PQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------  220 (315)
T ss_pred             CCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            34444444444455555444332223567999999999999999999999999999999999999999999872      


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                       .++++...+..   .   +......+||+|+.+||-
T Consensus       221 -~~v~~~~~D~~---~---~~~~~~~~~D~Vv~dPPr  250 (315)
T PRK03522        221 -TNVQFQALDST---Q---FATAQGEVPDLVLVNPPR  250 (315)
T ss_pred             -CceEEEEcCHH---H---HHHhcCCCCeEEEECCCC
Confidence             12334333221   1   111123479999999983

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.49  E-value=5.3e-14  Score=106.16  Aligned_cols=95  Identities=15%  Similarity=0.322  Sum_probs=68.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+++|||+|||+|+++..||+.|++|+++|.++.+++.|++....+-..     ...+ ..++.+...+ .    +...+
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~-----~~~~-~y~l~~~~~~-~----E~~~~  157 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL-----EGAI-AYRLEYEDTD-V----EGLTG  157 (282)
T ss_pred             CCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh-----cccc-ceeeehhhcc-h----hhccc
Confidence            3578999999999999999999999999999999999999984443211     1111 1223333322 1    12345


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .||.|+|++++.| .+....+.++.+.
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~  184 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSAL  184 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHH
Confidence            7999999999988 6777777776654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.48  E-value=6.6e-13  Score=107.65  Aligned_cols=115  Identities=14%  Similarity=0.015  Sum_probs=78.6

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      ++.|.+..-.....|.+.+.......++.+|||||||+|.+++.++..+.+|+++|.++.+++.+++|++.|+.      
T Consensus       207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------  280 (374)
T TIGR02085       207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------  280 (374)
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------
Confidence            45566666666667766555433223567999999999999999998889999999999999999999999872      


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                       .++.+...+..      ........+||+|+.+||. .......++.+
T Consensus       281 -~~~~~~~~d~~------~~~~~~~~~~D~vi~DPPr-~G~~~~~l~~l  321 (374)
T TIGR02085       281 -DNLSFAALDSA------KFATAQMSAPELVLVNPPR-RGIGKELCDYL  321 (374)
T ss_pred             -CcEEEEECCHH------HHHHhcCCCCCEEEECCCC-CCCcHHHHHHH
Confidence             13333333221      1111122469999999984 33333433333

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.48  E-value=9.4e-13  Score=106.75  Aligned_cols=121  Identities=18%  Similarity=0.219  Sum_probs=85.7

Q ss_pred             CCCceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCe
Q 030274           21 NDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CRE   98 (180)
Q Consensus        21 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~   98 (180)
                      |-.|...+..|.+.++.+.        ++  ....-|.++.+.+.+.+...  ++.+|||+|||+|.+++.+++.  +.+
T Consensus       210 PlqYIlG~~~F~G~~f~V~--------p~--vLIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~  277 (423)
T PRK14966        210 PVAYILGVREFYGRRFAVN--------PN--VLIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAF  277 (423)
T ss_pred             CceeEeeeeeecCcEEEeC--------CC--ccCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCE
Confidence            4445556666777777665        11  11134556788887765543  4569999999999999988864  579


Q ss_pred             EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274           99 VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus        99 V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      |+++|+|+.+++.+++|++.++        .++.+...+|....     .+ ..++||+|++|||+...
T Consensus       278 VtAVDiS~~ALe~AreNa~~~g--------~rV~fi~gDl~e~~-----l~-~~~~FDLIVSNPPYI~~  332 (423)
T PRK14966        278 VRASDISPPALETARKNAADLG--------ARVEFAHGSWFDTD-----MP-SEGKWDIIVSNPPYIEN  332 (423)
T ss_pred             EEEEECCHHHHHHHHHHHHHcC--------CcEEEEEcchhccc-----cc-cCCCccEEEECCCCCCc
Confidence            9999999999999999998875        24666666664321     00 13479999999997653

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.47  E-value=5e-13  Score=110.65  Aligned_cols=117  Identities=15%  Similarity=0.023  Sum_probs=84.8

Q ss_pred             ECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHH
Q 030274           31 FGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLK  110 (180)
Q Consensus        31 ~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~  110 (180)
                      |.+..+.+.        ++.|.+..-..++.+.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.|+.+++
T Consensus       262 ~~g~~f~~~--------~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~  333 (443)
T PRK13168        262 EFGLRLAFS--------PRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVE  333 (443)
T ss_pred             cCCeEEEEC--------CCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHH
Confidence            555555554        455666566667788887776655456789999999999999999998899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          111 ILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       111 ~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      .|++|++.|+.       .++.+...++...  +.. ......+||+|+++||.-
T Consensus       334 ~A~~n~~~~~~-------~~v~~~~~d~~~~--l~~-~~~~~~~fD~Vi~dPPr~  378 (443)
T PRK13168        334 RARENARRNGL-------DNVTFYHANLEED--FTD-QPWALGGFDKVLLDPPRA  378 (443)
T ss_pred             HHHHHHHHcCC-------CceEEEEeChHHh--hhh-hhhhcCCCCEEEECcCCc
Confidence            99999999862       2355555555322  110 011235799999999864

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.47  E-value=5.4e-13  Score=95.05  Aligned_cols=93  Identities=17%  Similarity=0.264  Sum_probs=71.4

Q ss_pred             CCCeEEEeCCcCChHHHHHh-hc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCS-RF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la-~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|.++..++ +.  +.+|+++|+++++++.++++++.++.       .++++...++.+.+.      .
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-------~ni~~~~~d~~~l~~------~   69 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-------DNIEFIQGDIEDLPQ------E   69 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-------TTEEEEESBTTCGCG------C
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-------cccceEEeehhcccc------c
Confidence            56799999999999999999 43  57999999999999999999998862       257777777766321      0


Q ss_pred             CCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          151 YPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ...+||+|+++.++++ .+...+++.+.+.
T Consensus        70 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~   99 (152)
T PF13847_consen   70 LEEKFDIIISNGVLHHFPDPEKVLKNIIRL   99 (152)
T ss_dssp             SSTTEEEEEEESTGGGTSHHHHHHHHHHHH
T ss_pred             cCCCeeEEEEcCchhhccCHHHHHHHHHHH
Confidence            1268999999999877 4455566665543

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.45  E-value=1.2e-12  Score=97.35  Aligned_cols=91  Identities=19%  Similarity=0.290  Sum_probs=67.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.|.+|+++|.|+.+++.+++++..++..       ++.....++....        ..+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-------~v~~~~~d~~~~~--------~~~   94 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-------NLHTAVVDLNNLT--------FDG   94 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------cceEEecChhhCC--------cCC
Confidence            5679999999999999999999999999999999999999998887521       2334444433211        245


Q ss_pred             CCcEEEEccccccCC---chhhHHHHHHh
Q 030274          154 GFDLILGADIYILYN---RSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~---~~~l~~~~~~a  179 (180)
                      +||+|+++.++++..   ...+++.+.++
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~  123 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRC  123 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHH
Confidence            799999999887633   33445444443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.45  E-value=1.4e-12  Score=100.39  Aligned_cols=118  Identities=12%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCC-CCCCCeEEEeCCcCChHHHHHhhc--CCeEE
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPD-VLQASSILELGSGVGVTGILCSRF--CREVL  100 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~-~~~~~~vLdlG~G~G~~~l~la~~--~~~V~  100 (180)
                      |...+..|.+.++.+.        ++.+-  .-+.++.|.+.+..... .....+|||+|||+|.+++.+++.  +.+|+
T Consensus        45 yi~g~~~f~g~~~~v~--------~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~  114 (251)
T TIGR03704        45 HVLGWAEFCGLRIAVD--------PGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELH  114 (251)
T ss_pred             HhcccCeEcCeEEEEC--------CCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEE
Confidence            4444566777666665        33222  23456777776654332 123458999999999999998865  46999


Q ss_pred             EecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          101 LTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       101 ~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ++|+++.+++.+++|++.|+          ..+...++...  +..   ...++||+|++|||++.
T Consensus       115 ~vDis~~al~~A~~N~~~~~----------~~~~~~D~~~~--l~~---~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704       115 AADIDPAAVRCARRNLADAG----------GTVHEGDLYDA--LPT---ALRGRVDILAANAPYVP  165 (251)
T ss_pred             EEECCHHHHHHHHHHHHHcC----------CEEEEeechhh--cch---hcCCCEeEEEECCCCCC
Confidence            99999999999999999885          23455554432  110   12357999999999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.44  E-value=1.2e-12  Score=102.53  Aligned_cols=79  Identities=24%  Similarity=0.336  Sum_probs=61.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|.+++.+++.  +.+|+++|+|+.+++.+++|++.++..      .++.+...++...     +   .
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~------~~i~~~~~D~~~~-----~---~  186 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE------DRVTLIQSDLFAA-----L---P  186 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEECchhhc-----c---C
Confidence            4568999999999999999986  469999999999999999999998621      2355555544321     1   2


Q ss_pred             CCCCcEEEEcccccc
Q 030274          152 PGGFDLILGADIYIL  166 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~  166 (180)
                      ..+||+|+++||+..
T Consensus       187 ~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       187 GRKYDLIVSNPPYVD  201 (284)
T ss_pred             CCCccEEEECCCCCC
Confidence            347999999999755

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.5e-12  Score=94.06  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=63.3

Q ss_pred             CCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           69 NPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ......+++|+|||||||.+|+.++-+| .+|+++|+++++++.+++|+....        .++.+..-+..+       
T Consensus        40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--------g~v~f~~~dv~~-------  104 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--------GDVEFVVADVSD-------  104 (198)
T ss_pred             HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--------CceEEEEcchhh-------
Confidence            3445688899999999999999999998 699999999999999999999853        234444333332       


Q ss_pred             HhhCCCCCcEEEEccccc
Q 030274          148 IQKYPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y  165 (180)
                         ...++|.++.|||+=
T Consensus       105 ---~~~~~dtvimNPPFG  119 (198)
T COG2263         105 ---FRGKFDTVIMNPPFG  119 (198)
T ss_pred             ---cCCccceEEECCCCc
Confidence               367899999999963

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.44  E-value=1.7e-12  Score=96.32  Aligned_cols=89  Identities=15%  Similarity=0.249  Sum_probs=64.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++++..++.+        +.....+....        ....
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--------v~~~~~d~~~~--------~~~~   93 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--------LRTDAYDINAA--------ALNE   93 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--------ceeEeccchhc--------cccC
Confidence            4579999999999999999999999999999999999999998877521        22333332211        1235


Q ss_pred             CCcEEEEccccccCCc---hhhHHHHHH
Q 030274          154 GFDLILGADIYILYNR---SLLMTSFFQ  178 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~---~~l~~~~~~  178 (180)
                      +||+|+++.++++...   ..+++.+.+
T Consensus        94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~  121 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQAGRVPEIIANMQA  121 (195)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            7999999998776332   344444443

Part of a tellurite-reducing operon tehA and tehB

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.43  E-value=1.1e-12  Score=97.35  Aligned_cols=109  Identities=14%  Similarity=0.084  Sum_probs=72.2

Q ss_pred             cchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHH-HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           56 WPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGIL-CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        56 w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~-la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      -|....+.+.+.... ....+.+|||||||+|.+++. +++...+|+++|.++.+++.+++|++.++.       .++.+
T Consensus        34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-------~~v~~  106 (199)
T PRK10909         34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-------GNARV  106 (199)
T ss_pred             CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEE
Confidence            455655544333321 113567999999999999995 455557999999999999999999999862       13444


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      ..-++..     . +.....+||+|+++||+.......+++.+.
T Consensus       107 ~~~D~~~-----~-l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~  144 (199)
T PRK10909        107 VNTNALS-----F-LAQPGTPHNVVFVDPPFRKGLLEETINLLE  144 (199)
T ss_pred             EEchHHH-----H-HhhcCCCceEEEECCCCCCChHHHHHHHHH
Confidence            4433321     1 122234799999999964444445555443

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.42  E-value=1.3e-12  Score=95.67  Aligned_cols=86  Identities=29%  Similarity=0.420  Sum_probs=65.9

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ..|..++..    .++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|++.++.        ++.+...++.
T Consensus         9 ~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------~~~~~~~d~~   76 (179)
T TIGR00537         9 LLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--------GLDVVMTDLF   76 (179)
T ss_pred             HHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--------ceEEEEcccc
Confidence            445555432    2557899999999999999999888999999999999999999998752        2444444443


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..         ..++||+|++++|+++
T Consensus        77 ~~---------~~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        77 KG---------VRGKFDVILFNPPYLP   94 (179)
T ss_pred             cc---------cCCcccEEEECCCCCC
Confidence            32         2358999999999865

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.42  E-value=2.1e-12  Score=102.46  Aligned_cols=94  Identities=14%  Similarity=0.195  Sum_probs=69.4

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|.++..+++.|.+|+++|.++++++.++.++..++.      ..++.+...   +.+.+    +...
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~------~~~i~~~~~---dae~l----~~~~  196 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV------TSTIEYLCT---TAEKL----ADEG  196 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc------ccceeEEec---CHHHh----hhcc
Confidence            3667999999999999999999999999999999999999988766531      112333322   22111    1235


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ++||+|++.+++++ .+....+..+.+.
T Consensus       197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~  224 (322)
T PLN02396        197 RKFDAVLSLEVIEHVANPAEFCKSLSAL  224 (322)
T ss_pred             CCCCEEEEhhHHHhcCCHHHHHHHHHHH
Confidence            68999999999988 6666777666554

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.41  E-value=2.4e-12  Score=99.29  Aligned_cols=94  Identities=19%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++++++.|++++...+.      ..++.+...+..+   +   .+...+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~------~~~v~~~~~d~~~---l---~~~~~~  111 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV------SDNMQFIHCAAQD---I---AQHLET  111 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------ccceEEEEcCHHH---H---hhhcCC
Confidence            557999999999999999999999999999999999999999887752      1223333322221   1   112356


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +||+|++..++++ .+...++..+.+.
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~  138 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSV  138 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHH
Confidence            8999999999877 5666666665544

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.41  E-value=8.4e-12  Score=99.92  Aligned_cols=98  Identities=18%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             cCCcCc-eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCC
Q 030274           48 FDLTGQ-LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSEN  124 (180)
Q Consensus        48 ~~~~g~-~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~  124 (180)
                      ++.|.+ .+-.++..|.+.+...    ...+|||+|||+|.+++.+++.+  .+|+++|.++.+++.+++|++.|+..  
T Consensus       173 pgvFs~~~lD~gt~lLl~~l~~~----~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--  246 (342)
T PRK09489        173 PGVFSRDGLDVGSQLLLSTLTPH----TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--  246 (342)
T ss_pred             CCCCCCCCCCHHHHHHHHhcccc----CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence            444444 3555667777766432    23489999999999999998864  58999999999999999999998621  


Q ss_pred             CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          125 PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                            ..+.   +.+.  ..    ...++||+|++|+|++.
T Consensus       247 ------~~~~---~~D~--~~----~~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        247 ------GEVF---ASNV--FS----DIKGRFDMIISNPPFHD  273 (342)
T ss_pred             ------CEEE---Eccc--cc----ccCCCccEEEECCCccC
Confidence                  1222   2221  11    12468999999999865

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.41  E-value=2.8e-12  Score=94.23  Aligned_cols=81  Identities=19%  Similarity=0.365  Sum_probs=60.5

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..+..++||||||.|.-++.+|+.|..|+++|.|+.+++.+++.++..++        .++....+.....        .
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--------~i~~~~~Dl~~~~--------~   91 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--------DIRTRVADLNDFD--------F   91 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---------TEEEEE-BGCCBS---------
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--------eeEEEEecchhcc--------c
Confidence            34677999999999999999999999999999999999999888877752        3556666665442        2


Q ss_pred             CCCCcEEEEccccccCC
Q 030274          152 PGGFDLILGADIYILYN  168 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~  168 (180)
                      +..||+|++.-++.+-.
T Consensus        92 ~~~yD~I~st~v~~fL~  108 (192)
T PF03848_consen   92 PEEYDFIVSTVVFMFLQ  108 (192)
T ss_dssp             TTTEEEEEEESSGGGS-
T ss_pred             cCCcCEEEEEEEeccCC
Confidence            46899999876665533

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.41  E-value=4.4e-12  Score=104.72  Aligned_cols=107  Identities=12%  Similarity=-0.031  Sum_probs=77.9

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      +..|.+.....+..|.+.+.+.....++.+|||+|||+|.+++.+|+.+.+|+++|.++.+++.+++|++.|+.      
T Consensus       266 ~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------  339 (431)
T TIGR00479       266 ARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------  339 (431)
T ss_pred             CCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------
Confidence            45566667777777877777655544667999999999999999999888999999999999999999999872      


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                       .++.+...++...  +.. ......+||+|+.+||-
T Consensus       340 -~nv~~~~~d~~~~--l~~-~~~~~~~~D~vi~dPPr  372 (431)
T TIGR00479       340 -ANVEFLAGTLETV--LPK-QPWAGQIPDVLLLDPPR  372 (431)
T ss_pred             -CceEEEeCCHHHH--HHH-HHhcCCCCCEEEECcCC
Confidence             2344443333210  111 11123579999999884

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.39  E-value=3.9e-12  Score=100.55  Aligned_cols=77  Identities=25%  Similarity=0.349  Sum_probs=60.1

Q ss_pred             CeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+|||+|||+|.+++.+++.  +.+|+++|+|+.+++.+++|++.++..      .++.+...++...     +   ...
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~------~~i~~~~~D~~~~-----l---~~~  200 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE------DRVTLIESDLFAA-----L---PGR  200 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------CcEEEEECchhhh-----C---CCC
Confidence            68999999999999999876  479999999999999999999988621      2355555444321     1   234


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|+++||+..
T Consensus       201 ~fDlIvsNPPyi~  213 (307)
T PRK11805        201 RYDLIVSNPPYVD  213 (307)
T ss_pred             CccEEEECCCCCC
Confidence            7999999999754

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.38  E-value=4.8e-12  Score=99.09  Aligned_cols=120  Identities=17%  Similarity=0.153  Sum_probs=80.7

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcC--CeEE
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFC--REVL  100 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~  100 (180)
                      |.+....|.+.++.+.        .+.+  .-.|.++.+.+.+.... ...+..+|||+|||+|.+++.+++..  .+|+
T Consensus        73 yi~g~~~f~g~~f~v~--------~~vl--iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~  142 (284)
T TIGR00536        73 YLLGSKEFYGLEFFVN--------EHVL--IPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVI  142 (284)
T ss_pred             HHhCcceEcCeEEEEC--------CCCc--CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEE
Confidence            4444556677666665        1111  12344566666554321 11123689999999999999999863  6999


Q ss_pred             EecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          101 LTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       101 ~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ++|+++.+++.+++|++.++..      .++.+...+|....        ...+||+|++|||+...
T Consensus       143 avDis~~al~~a~~n~~~~~~~------~~v~~~~~d~~~~~--------~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       143 AVDISPDALAVAEENAEKNQLE------HRVEFIQSNLFEPL--------AGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             EEECCHHHHHHHHHHHHHcCCC------CcEEEEECchhccC--------cCCCccEEEECCCCCCc
Confidence            9999999999999999988621      23566665554321        12379999999998663

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.38  E-value=9.9e-12  Score=100.37  Aligned_cols=118  Identities=14%  Similarity=0.023  Sum_probs=83.0

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      ++.|.+.....++.|.+++.+.... .+.+|||++||+|.+++.+++...+|+++|.++.+++.+++|+..|+..     
T Consensus       181 ~~sF~Q~N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-----  254 (362)
T PRK05031        181 ENSFTQPNAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-----  254 (362)
T ss_pred             CCCeeccCHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-----
Confidence            5668888888889999888765432 2357999999999999999998889999999999999999999999721     


Q ss_pred             CCcEEEEEeecCCCchhhHHHhh-----------CCCCCcEEEEccccccCCchhhHHHH
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQK-----------YPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                        ++.+...+....  +..+...           ...+||+|+..|| +..-...+++.+
T Consensus       255 --~v~~~~~d~~~~--l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R~G~~~~~l~~l  309 (362)
T PRK05031        255 --NVQIIRMSAEEF--TQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-RAGLDDETLKLV  309 (362)
T ss_pred             --cEEEEECCHHHH--HHHHhhcccccccccccccCCCCCEEEECCC-CCCCcHHHHHHH
Confidence              344443333221  1111100           0125999999999 443344444444

>PRK14967 putative methyltransferase; Provisional

Probab=99.36  E-value=6.5e-12  Score=95.06  Aligned_cols=92  Identities=16%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      .+..+++++.... ..++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|+..++.        ++.+...
T Consensus        21 ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--------~~~~~~~   91 (223)
T PRK14967         21 DTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--------DVDVRRG   91 (223)
T ss_pred             cHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--------eeEEEEC
Confidence            4567777776532 33567999999999999999998765 999999999999999999988851        2344444


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ++...        ....+||+|++++|++.
T Consensus        92 d~~~~--------~~~~~fD~Vi~npPy~~  113 (223)
T PRK14967         92 DWARA--------VEFRPFDVVVSNPPYVP  113 (223)
T ss_pred             chhhh--------ccCCCeeEEEECCCCCC
Confidence            44321        12458999999998765

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=6.3e-12  Score=92.85  Aligned_cols=118  Identities=18%  Similarity=0.298  Sum_probs=84.3

Q ss_pred             CcccCCCceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC
Q 030274           17 SFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC   96 (180)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~   96 (180)
                      ..|++..+.  .+.+.+..+.|...++++..             .+.-.+.+.....++.+|||||||+|+.+..+|+..
T Consensus        30 e~FVp~~~~--~~AY~d~~lpi~~gqtis~P-------------~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~   94 (209)
T COG2518          30 ELFVPAAYK--HLAYEDRALPIGCGQTISAP-------------HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV   94 (209)
T ss_pred             HhccCchhh--cccccCCcccCCCCceecCc-------------HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh
Confidence            468887776  77777887887755554432             233334444455688999999999999999999998


Q ss_pred             CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccc
Q 030274           97 REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus        97 ~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      .+|+.+|..++..+.|++|++..++       .++.+..-|=...     +  ....+||.|+.+--
T Consensus        95 ~~V~siEr~~~L~~~A~~~L~~lg~-------~nV~v~~gDG~~G-----~--~~~aPyD~I~Vtaa  147 (209)
T COG2518          95 GRVVSIERIEELAEQARRNLETLGY-------ENVTVRHGDGSKG-----W--PEEAPYDRIIVTAA  147 (209)
T ss_pred             CeEEEEEEcHHHHHHHHHHHHHcCC-------CceEEEECCcccC-----C--CCCCCcCEEEEeec
Confidence            8999999999999999999999873       2344443332221     1  12368999987653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.35  E-value=1.3e-11  Score=93.11  Aligned_cols=79  Identities=19%  Similarity=0.337  Sum_probs=61.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++.      ..++.+...++...          .
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~------~~~i~~~~~d~~~~----------~  117 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV------AGNVEFEVNDLLSL----------C  117 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEECChhhC----------C
Confidence            4678999999999999999998888999999999999999999877642      11344444333321          2


Q ss_pred             CCCcEEEEccccccC
Q 030274          153 GGFDLILGADIYILY  167 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~  167 (180)
                      .+||+|++++++++.
T Consensus       118 ~~fD~ii~~~~l~~~  132 (219)
T TIGR02021       118 GEFDIVVCMDVLIHY  132 (219)
T ss_pred             CCcCEEEEhhHHHhC
Confidence            689999999997664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02244 tocopherol O-methyltransferase

Probab=99.35  E-value=2e-11  Score=97.84  Aligned_cols=93  Identities=12%  Similarity=0.072  Sum_probs=69.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           73 LQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++++.++.      ..++.+...+..+.       +..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~------~~~v~~~~~D~~~~-------~~~  183 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL------SDKVSFQVADALNQ-------PFE  183 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEEcCcccC-------CCC
Confidence            46779999999999999999885 78999999999999999999888752      12355554444332       113


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      .++||+|++..++++ .+....++.+.+
T Consensus       184 ~~~FD~V~s~~~~~h~~d~~~~l~e~~r  211 (340)
T PLN02244        184 DGQFDLVWSMESGEHMPDKRKFVQELAR  211 (340)
T ss_pred             CCCccEEEECCchhccCCHHHHHHHHHH
Confidence            568999999998766 555555555544

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.35  E-value=5.3e-12  Score=105.93  Aligned_cols=120  Identities=19%  Similarity=0.186  Sum_probs=81.8

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCC------------------------CCCCCeEE
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPD------------------------VLQASSIL   79 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~------------------------~~~~~~vL   79 (180)
                      |......|.+.+|.|..        +  =..--|.++.|++++.+...                        ..+..+||
T Consensus        74 YI~G~~~F~g~~f~V~~--------~--VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL  143 (506)
T PRK01544         74 YITGVKEFYSREFIVNK--------H--VLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL  143 (506)
T ss_pred             HHhCcCEEcCcEEEeCC--------C--cccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence            44556677787777651        1  11234556777777653211                        11346899


Q ss_pred             EeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcE
Q 030274           80 ELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDL  157 (180)
Q Consensus        80 dlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  157 (180)
                      |+|||+|.+++.+++.  +.+|+++|+|+.+++.+++|+..++..      .++.+...+|...        ....+||+
T Consensus       144 DlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~------~~v~~~~~D~~~~--------~~~~~fDl  209 (506)
T PRK01544        144 ELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT------DRIQIIHSNWFEN--------IEKQKFDF  209 (506)
T ss_pred             EccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc------cceeeeecchhhh--------CcCCCccE
Confidence            9999999999988764  579999999999999999999888621      2344555444321        12357999


Q ss_pred             EEEccccccC
Q 030274          158 ILGADIYILY  167 (180)
Q Consensus       158 Ii~~d~~y~~  167 (180)
                      |++|||+...
T Consensus       210 IvsNPPYi~~  219 (506)
T PRK01544        210 IVSNPPYISH  219 (506)
T ss_pred             EEECCCCCCc
Confidence            9999998763

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.35  E-value=5.9e-12  Score=99.55  Aligned_cols=87  Identities=13%  Similarity=0.091  Sum_probs=60.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEe-ecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKL-EWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  149 (180)
                      .+.++||||||+|.+...++..  +.+++++|+++.+++.|++|++.| +..      .++.+... +-..  .+... .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~------~~I~~~~~~~~~~--i~~~i-~  184 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN------GAIRLRLQKDSKA--IFKGI-I  184 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc------CcEEEEEccchhh--hhhcc-c
Confidence            4579999999999877776653  689999999999999999999999 532      23443221 1110  01000 0


Q ss_pred             hCCCCCcEEEEccccccCCc
Q 030274          150 KYPGGFDLILGADIYILYNR  169 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~  169 (180)
                      ...++||+|+||||+|....
T Consensus       185 ~~~~~fDlivcNPPf~~s~~  204 (321)
T PRK11727        185 HKNERFDATLCNPPFHASAA  204 (321)
T ss_pred             ccCCceEEEEeCCCCcCcch
Confidence            12458999999999998543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.34  E-value=1.3e-11  Score=97.74  Aligned_cols=82  Identities=13%  Similarity=0.177  Sum_probs=60.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.|.+|+++|+|+.|++.+++|+.......  ....++.+...++..          ..+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~--~~~~~~~f~~~Dl~~----------l~~  211 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL--PPEVLPKFEANDLES----------LSG  211 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc--ccccceEEEEcchhh----------cCC
Confidence            57799999999999999999999999999999999999999987642100  001122333332211          246


Q ss_pred             CCcEEEEccccccC
Q 030274          154 GFDLILGADIYILY  167 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~  167 (180)
                      +||+|++.+++++.
T Consensus       212 ~fD~Vv~~~vL~H~  225 (315)
T PLN02585        212 KYDTVTCLDVLIHY  225 (315)
T ss_pred             CcCEEEEcCEEEec
Confidence            89999999998663

>PLN02672 methionine S-methyltransferase

Probab=99.34  E-value=1.5e-11  Score=109.70  Aligned_cols=105  Identities=18%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             chHHHHHHHHhhCCC-CCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCC---------
Q 030274           57 PGAMLMNDYLSKNPD-VLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSEN---------  124 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~-~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~---------  124 (180)
                      |.++.|++.|...+. .+++.+|||+|||+|.+++.+++..  .+|+++|+|+.+++.|++|++.|+....         
T Consensus       100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~  179 (1082)
T PLN02672        100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEG  179 (1082)
T ss_pred             hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccc
Confidence            455778887655432 2346799999999999999998863  6999999999999999999999863210         


Q ss_pred             CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          125 PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      .....++.+..-+|...-      .....+||+||+|||+...
T Consensus       180 ~~l~~rV~f~~sDl~~~~------~~~~~~fDlIVSNPPYI~~  216 (1082)
T PLN02672        180 KTLLDRVEFYESDLLGYC------RDNNIELDRIVGCIPQILN  216 (1082)
T ss_pred             ccccccEEEEECchhhhc------cccCCceEEEEECCCcCCC
Confidence            011234666666665321      1112369999999998763

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.34  E-value=1.4e-11  Score=96.62  Aligned_cols=78  Identities=18%  Similarity=0.322  Sum_probs=61.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.|.+|+++|.|+.+++.+++++..++.        ++.+...+.....        ..+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--------~v~~~~~D~~~~~--------~~~  183 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--------NIRTGLYDINSAS--------IQE  183 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--------ceEEEEechhccc--------ccC
Confidence            456999999999999999999999999999999999999999988762        2334333332211        256


Q ss_pred             CCcEEEEccccccC
Q 030274          154 GFDLILGADIYILY  167 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~  167 (180)
                      +||+|+++.++++-
T Consensus       184 ~fD~I~~~~vl~~l  197 (287)
T PRK12335        184 EYDFILSTVVLMFL  197 (287)
T ss_pred             CccEEEEcchhhhC
Confidence            89999999988763

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.33  E-value=1.3e-11  Score=92.14  Aligned_cols=83  Identities=23%  Similarity=0.298  Sum_probs=60.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+|+.+++.|++++..            +.+...+....        ..
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~------------~~~~~~d~~~~--------~~  102 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN------------INIIQGSLFDP--------FK  102 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC------------CcEEEeeccCC--------CC
Confidence            5678999999999999988875  57999999999999999987421            22333333221        13


Q ss_pred             CCCCcEEEEccccccCCchhhHHHH
Q 030274          152 PGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      .++||+|+++.++++-.+..+...+
T Consensus       103 ~~sfD~V~~~~vL~hl~p~~~~~~l  127 (204)
T TIGR03587       103 DNFFDLVLTKGVLIHINPDNLPTAY  127 (204)
T ss_pred             CCCEEEEEECChhhhCCHHHHHHHH
Confidence            5689999999999875444444333

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.32  E-value=8.5e-11  Score=95.80  Aligned_cols=89  Identities=17%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++++|||+|||+|.+++.++..+ .+|+++|.++.+++.+++|++.|+...     .++++...+..+.  +.. .....
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-----~~v~~i~~D~~~~--l~~-~~~~~  291 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-----SKAEFVRDDVFKL--LRT-YRDRG  291 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-----CcEEEEEccHHHH--HHH-HHhcC
Confidence            57899999999999999877665 499999999999999999999997320     1233333332211  111 11124


Q ss_pred             CCCcEEEEccccccCCch
Q 030274          153 GGFDLILGADIYILYNRS  170 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~~~  170 (180)
                      .+||+|+++||.|.....
T Consensus       292 ~~fDlVilDPP~f~~~k~  309 (396)
T PRK15128        292 EKFDVIVMDPPKFVENKS  309 (396)
T ss_pred             CCCCEEEECCCCCCCChH
Confidence            589999999998765443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.31  E-value=3.4e-12  Score=86.75  Aligned_cols=81  Identities=21%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             CCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           75 ASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      |.+|||+|||+|.+.+.+++.+ .+++++|+++.+++.++.|+..++.      ..++.+..-++....     ......
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~------~~~~~~~~~D~~~~~-----~~~~~~   69 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL------DDRVEVIVGDARDLP-----EPLPDG   69 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT------TTTEEEEESHHHHHH-----HTCTTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC------CceEEEEECchhhch-----hhccCc
Confidence            4589999999999999999988 8999999999999999999999862      234555554443221     112467


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|++|+|+..
T Consensus        70 ~~D~Iv~npP~~~   82 (117)
T PF13659_consen   70 KFDLIVTNPPYGP   82 (117)
T ss_dssp             -EEEEEE--STTS
T ss_pred             eeEEEEECCCCcc
Confidence            9999999999875

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.31  E-value=2.5e-11  Score=95.26  Aligned_cols=97  Identities=22%  Similarity=0.305  Sum_probs=70.2

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSD  128 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~  128 (180)
                      .||.-..|.+....+++.+..  .++++|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|+..|+..      
T Consensus       137 aFgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~------  208 (288)
T TIGR00406       137 AFGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS------  208 (288)
T ss_pred             cccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------
Confidence            355556677777777776543  267899999999999999998886 48999999999999999999998732      


Q ss_pred             CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccc
Q 030274          129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      .++.+...+   ..      ....++||+|+++-.
T Consensus       209 ~~~~~~~~~---~~------~~~~~~fDlVvan~~  234 (288)
T TIGR00406       209 DRLQVKLIY---LE------QPIEGKADVIVANIL  234 (288)
T ss_pred             cceEEEecc---cc------cccCCCceEEEEecC
Confidence            122222111   10      112468999999754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.31  E-value=1.8e-11  Score=94.14  Aligned_cols=97  Identities=14%  Similarity=0.064  Sum_probs=66.4

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      ++.+.+.....+..+|||+|||+|..+..+++.+.+|+++|+++.+++.++++....            .+...+.... 
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~------------~~~~~d~~~~-   97 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAAD------------HYLAGDIESL-   97 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC------------CEEEcCcccC-
Confidence            333333333335679999999999999988888899999999999999998874321            1333333221 


Q ss_pred             hhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          143 QINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                            +....+||+|+++.++.+ .+....+..+.+
T Consensus        98 ------~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~  128 (251)
T PRK10258         98 ------PLATATFDLAWSNLAVQWCGNLSTALRELYR  128 (251)
T ss_pred             ------cCCCCcEEEEEECchhhhcCCHHHHHHHHHH
Confidence                  113458999999998866 455555555544

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.30  E-value=1.5e-11  Score=98.97  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ++.|.+..+.....|.+++.+.....++ +|||+.||+|.+|+.+|+.+.+|+++|.++.+++.|++|++.|+
T Consensus       171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~  242 (352)
T PF05958_consen  171 PGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNG  242 (352)
T ss_dssp             TTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             CCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcC
Confidence            6778999999999999998887665444 89999999999999999999999999999999999999999997

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.30  E-value=1.8e-11  Score=91.52  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=65.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      +..++.+.....++.+|||+|||+|..+..+++.   +.+|+++|.++++++.+++|+..++..      .++++...+.
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~------~~v~~~~~d~  133 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW------GVVEVYHGDG  133 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CcEEEEECCc
Confidence            4444544444446789999999999999888874   369999999999999999999887621      1344444443


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ....       ....+||+|+++..+.+
T Consensus       134 ~~~~-------~~~~~fD~Ii~~~~~~~  154 (205)
T PRK13944        134 KRGL-------EKHAPFDAIIVTAAAST  154 (205)
T ss_pred             ccCC-------ccCCCccEEEEccCcch
Confidence            3210       12358999999876543

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.30  E-value=1.8e-11  Score=93.10  Aligned_cols=100  Identities=20%  Similarity=0.258  Sum_probs=73.1

Q ss_pred             chHHHHHHHHhh---CCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274           57 PGAMLMNDYLSK---NPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL  131 (180)
Q Consensus        57 ~~~~~l~~~l~~---~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~  131 (180)
                      |.++.+.+++..   +....++..+||+|||+|.+++.+++.  ...|+++|.|+.++..|.+|++.+..+      ..+
T Consensus       128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~------g~i  201 (328)
T KOG2904|consen  128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS------GRI  201 (328)
T ss_pred             ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc------Cce
Confidence            345556666543   333446668999999999999988764  368999999999999999999998743      456


Q ss_pred             EEEEe----ecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          132 AVAKL----EWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       132 ~~~~~----~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      .+.+.    +|....      +...+++|++++||||...+
T Consensus       202 ~v~~~~me~d~~~~~------~l~~~~~dllvsNPPYI~~d  236 (328)
T KOG2904|consen  202 EVIHNIMESDASDEH------PLLEGKIDLLVSNPPYIRKD  236 (328)
T ss_pred             EEEeccccccccccc------ccccCceeEEecCCCccccc
Confidence            66644    333321      12357999999999987743

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.30  E-value=3.5e-11  Score=90.55  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=64.9

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC---eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR---EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~---~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      ..+...+.+.....++.+|||+|||+|..+..+++...   +|+++|.++.+++.+++|++.++.       .++.+...
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-------~~v~~~~~  135 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-------DNVIVIVG  135 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-------CCeEEEEC
Confidence            33444444444455788999999999999999998743   599999999999999999998862       23445544


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      +.....       ....+||+|+++.+.
T Consensus       136 d~~~~~-------~~~~~fD~Ii~~~~~  156 (215)
T TIGR00080       136 DGTQGW-------EPLAPYDRIYVTAAG  156 (215)
T ss_pred             CcccCC-------cccCCCCEEEEcCCc
Confidence            433211       123589999988654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=1.3e-11  Score=101.03  Aligned_cols=87  Identities=13%  Similarity=0.109  Sum_probs=78.9

Q ss_pred             EEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274           27 TTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE  106 (180)
Q Consensus        27 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~  106 (180)
                      ++-.+.+.+|+|+        ++.|.+.+-..+++|..++..+.....++.+||+.||||.+|+++|+...+|+++++++
T Consensus       344 I~E~l~~ltF~iS--------p~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~  415 (534)
T KOG2187|consen  344 ITESLLGLTFRIS--------PGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISP  415 (534)
T ss_pred             EEeecCCeEEEEC--------CchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecCh
Confidence            3556677777776        77899999999999999999998888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 030274          107 EVLKILKKNIEHHTS  121 (180)
Q Consensus       107 ~~l~~~~~n~~~n~~  121 (180)
                      .+++.|+.|++.|+.
T Consensus       416 ~aV~dA~~nA~~Ngi  430 (534)
T KOG2187|consen  416 DAVEDAEKNAQINGI  430 (534)
T ss_pred             hhcchhhhcchhcCc
Confidence            999999999999983

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.29  E-value=5e-11  Score=87.78  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=57.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|++.++.       .++++...+....       . .
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l-------~~i~~~~~d~~~~-------~-~  109 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL-------KNVTVVHGRAEEF-------G-Q  109 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC-------CCEEEEeccHhhC-------C-C
Confidence            4789999999999999988863  57999999999999999999999862       1244444433321       1 1


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      .++||+|+++.
T Consensus       110 ~~~fDlV~~~~  120 (187)
T PRK00107        110 EEKFDVVTSRA  120 (187)
T ss_pred             CCCccEEEEcc
Confidence            45899999975

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.29  E-value=2.4e-11  Score=93.50  Aligned_cols=68  Identities=24%  Similarity=0.374  Sum_probs=57.5

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhc
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ||.-..+.+..+.+++.+..  .++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..|+
T Consensus        98 fgtg~h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~  166 (250)
T PRK00517         98 FGTGTHPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG  166 (250)
T ss_pred             cCCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence            45556778888888777653  3678999999999999999888875 59999999999999999999987

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.29  E-value=3e-11  Score=88.61  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=57.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|.+++.+++.+  .+|+++|.++.+++.+++|++.++.       .++.+...+..+.        ..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-------~~i~~i~~d~~~~--------~~  106 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-------NNVEIVNGRAEDF--------QH  106 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-------CCeEEEecchhhc--------cc
Confidence            57899999999999999988653  6899999999999999999988762       2355555544331        12


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      .++||+|+++.
T Consensus       107 ~~~fD~I~s~~  117 (181)
T TIGR00138       107 EEQFDVITSRA  117 (181)
T ss_pred             cCCccEEEehh
Confidence            46899999876

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=2e-11  Score=100.21  Aligned_cols=105  Identities=12%  Similarity=0.041  Sum_probs=80.7

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      ++.|.+.+-..++.|..+..+..+..++.++||+.||.|.+|+.+|+...+|+++|+++++++.|++|++.|+..     
T Consensus       267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-----  341 (432)
T COG2265         267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-----  341 (432)
T ss_pred             CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-----
Confidence            346677777788999999888877667789999999999999999999999999999999999999999999822     


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccc
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                           ...+.-+....+.... .....+|.|+..||
T Consensus       342 -----N~~f~~~~ae~~~~~~-~~~~~~d~VvvDPP  371 (432)
T COG2265         342 -----NVEFIAGDAEEFTPAW-WEGYKPDVVVVDPP  371 (432)
T ss_pred             -----cEEEEeCCHHHHhhhc-cccCCCCEEEECCC
Confidence                 2233333332221110 02357899999987

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.29  E-value=3e-11  Score=93.63  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=74.7

Q ss_pred             eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      .+-|.+..-...+.......++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....         .++.
T Consensus        32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~i~  102 (263)
T PTZ00098         32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---------NKIE  102 (263)
T ss_pred             CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---------CceE
Confidence            345555444555555555567889999999999988888764 679999999999999999876432         1344


Q ss_pred             EEEeecCCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHHh
Q 030274          133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQA  179 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~a  179 (180)
                      +...+....       +...++||+|++.+++++.   +...+++.+.+.
T Consensus       103 ~~~~D~~~~-------~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~  145 (263)
T PTZ00098        103 FEANDILKK-------DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKW  145 (263)
T ss_pred             EEECCcccC-------CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHH
Confidence            554444321       1134689999999987663   444555554443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.29  E-value=8.1e-11  Score=94.79  Aligned_cols=72  Identities=18%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ++.|.+........|.+++.+.... .+.+|||+|||+|.+++.+++...+|+++|.++++++.+++|++.|+
T Consensus       172 ~~~F~Q~N~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~  243 (353)
T TIGR02143       172 ENSFTQPNAAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANN  243 (353)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            4567777777788888877765432 23479999999999999999988899999999999999999999997

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.28  E-value=2.3e-11  Score=88.25  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=62.8

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +.+.....++.+|||+|||+|.++..+++.+.+|+++|.++.+++.+++|+...         .++++...+..+..   
T Consensus         5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---------~~v~ii~~D~~~~~---   72 (169)
T smart00650        5 IVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---------DNLTVIHGDALKFD---   72 (169)
T ss_pred             HHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---------CCEEEEECchhcCC---
Confidence            333333446679999999999999999988889999999999999999987542         13555555444331   


Q ss_pred             HHHhhCCCCCcEEEEcccccc
Q 030274          146 KIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       146 ~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                          ....+||+|+++.|++.
T Consensus        73 ----~~~~~~d~vi~n~Py~~   89 (169)
T smart00650       73 ----LPKLQPYKVVGNLPYNI   89 (169)
T ss_pred             ----ccccCCCEEEECCCccc
Confidence                11236999999988754

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.28  E-value=3.5e-11  Score=93.59  Aligned_cols=96  Identities=23%  Similarity=0.338  Sum_probs=72.5

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .|.++.+.+++.......++.+|||+|||+|.+++.+++..  .+|+++|+++.+++.+++|+....       ..++.+
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~-------~~~i~~  162 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL-------GARVEF  162 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC-------CCcEEE
Confidence            45567788877654444467799999999999999998864  799999999999999999998221       234666


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ...++....        ..++||+|++++|+..
T Consensus       163 ~~~d~~~~~--------~~~~fD~Iv~npPy~~  187 (275)
T PRK09328        163 LQGDWFEPL--------PGGRFDLIVSNPPYIP  187 (275)
T ss_pred             EEccccCcC--------CCCceeEEEECCCcCC
Confidence            666664321        1368999999999764

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.27  E-value=1.6e-11  Score=89.65  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .-.++||+|||.|.++..||..+.+++++|+++.+++.+++++...         .++.+...+....        .+.+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---------~~V~~~~~dvp~~--------~P~~  105 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---------PHVEWIQADVPEF--------WPEG  105 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----------SSEEEEES-TTT-----------SS
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---------CCeEEEECcCCCC--------CCCC
Confidence            3458999999999999999999999999999999999999987653         2466666655443        1467


Q ss_pred             CCcEEEEccccccCCch
Q 030274          154 GFDLILGADIYILYNRS  170 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~~  170 (180)
                      +||+|+.+.++|+-...
T Consensus       106 ~FDLIV~SEVlYYL~~~  122 (201)
T PF05401_consen  106 RFDLIVLSEVLYYLDDA  122 (201)
T ss_dssp             -EEEEEEES-GGGSSSH
T ss_pred             CeeEEEEehHhHcCCCH
Confidence            99999999999886543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.27  E-value=2.5e-11  Score=78.90  Aligned_cols=83  Identities=14%  Similarity=0.249  Sum_probs=60.7

Q ss_pred             EEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcE
Q 030274           79 LELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDL  157 (180)
Q Consensus        79 LdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  157 (180)
                      ||+|||+|..+..+++. +.+|+++|.++++++.++++....+          +.+...+..+.       +...++||+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----------~~~~~~d~~~l-------~~~~~sfD~   63 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----------VSFRQGDAEDL-------PFPDNSFDV   63 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----------EEEEESBTTSS-------SS-TT-EEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----------chheeehHHhC-------ccccccccc
Confidence            89999999999999998 8899999999999999999876654          33444444433       224679999


Q ss_pred             EEEccccccC-CchhhHHHHHH
Q 030274          158 ILGADIYILY-NRSLLMTSFFQ  178 (180)
Q Consensus       158 Ii~~d~~y~~-~~~~l~~~~~~  178 (180)
                      |+++.++++. +....++-+.+
T Consensus        64 v~~~~~~~~~~~~~~~l~e~~r   85 (95)
T PF08241_consen   64 VFSNSVLHHLEDPEAALREIYR   85 (95)
T ss_dssp             EEEESHGGGSSHHHHHHHHHHH
T ss_pred             cccccceeeccCHHHHHHHHHH
Confidence            9999998874 55555554443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.26  E-value=7.5e-11  Score=91.12  Aligned_cols=93  Identities=17%  Similarity=0.225  Sum_probs=76.9

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      +...-.+.+.+...+.+|++|||||||.|.+++.+|+. +.+|+++++|++..+.+++.+...+.      ..++++.-.
T Consensus        56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl------~~~v~v~l~  129 (283)
T COG2230          56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL------EDNVEVRLQ  129 (283)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC------CcccEEEec
Confidence            33444555666677779999999999999999999987 79999999999999999999999873      346778888


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +|.+..          ++||-|++-.++-+
T Consensus       130 d~rd~~----------e~fDrIvSvgmfEh  149 (283)
T COG2230         130 DYRDFE----------EPFDRIVSVGMFEH  149 (283)
T ss_pred             cccccc----------cccceeeehhhHHH
Confidence            888753          45999999998866

>TIGR00452 methyltransferase, putative

Probab=99.26  E-value=7.6e-11  Score=93.22  Aligned_cols=97  Identities=12%  Similarity=0.073  Sum_probs=64.3

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ....++++|||+|||+|..+..++..+. .|+++|.|+.++..++.......      ...++.+...+..+.       
T Consensus       117 l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~~ie~l-------  183 (314)
T TIGR00452       117 LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPLGIEQL-------  183 (314)
T ss_pred             cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEECCHHHC-------
Confidence            3445788999999999999888888774 79999999998876543322211      011233443332221       


Q ss_pred             hhCCCCCcEEEEcccccc-CCchhhHHHHHHhC
Q 030274          149 QKYPGGFDLILGADIYIL-YNRSLLMTSFFQAI  180 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~al  180 (180)
                      + ...+||+|+++.++|| .+....+..+.++|
T Consensus       184 p-~~~~FD~V~s~gvL~H~~dp~~~L~el~r~L  215 (314)
T TIGR00452       184 H-ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQL  215 (314)
T ss_pred             C-CCCCcCEEEEcchhhccCCHHHHHHHHHHhc
Confidence            1 1348999999999988 56556666665543

Known examples to date are restricted to the proteobacteria.

>PRK14968 putative methyltransferase; Provisional

Probab=99.26  E-value=2.6e-11  Score=88.94  Aligned_cols=94  Identities=20%  Similarity=0.304  Sum_probs=69.8

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      ++.+..+.+++..    .++++|||+|||+|..+..+++.+.+|+++|.++.+++.+++|+..++.+.     .++.+..
T Consensus         9 ~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-----~~~~~~~   79 (188)
T PRK14968          9 AEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRN-----NGVEVIR   79 (188)
T ss_pred             chhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCC-----cceEEEe
Confidence            4455666666653    366799999999999999999889999999999999999999998876321     1144444


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .++...     +   ...+||+|+++++++.
T Consensus        80 ~d~~~~-----~---~~~~~d~vi~n~p~~~  102 (188)
T PRK14968         80 SDLFEP-----F---RGDKFDVILFNPPYLP  102 (188)
T ss_pred             cccccc-----c---cccCceEEEECCCcCC
Confidence            444322     1   2337999999998765

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.26  E-value=7.6e-11  Score=98.52  Aligned_cols=93  Identities=15%  Similarity=0.240  Sum_probs=69.4

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ..++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++|....+        .++.+...++....       .
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--------~~v~~~~~d~~~~~-------~  328 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--------CSVEFEVADCTKKT-------Y  328 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--------CceEEEEcCcccCC-------C
Confidence            346779999999999999988874 6799999999999999998875332        23555555554321       1


Q ss_pred             CCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          151 YPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ..++||+|++..++++ .+...+++.+.+.
T Consensus       329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~  358 (475)
T PLN02336        329 PDNSFDVIYSRDTILHIQDKPALFRSFFKW  358 (475)
T ss_pred             CCCCEEEEEECCcccccCCHHHHHHHHHHH
Confidence            2458999999999877 5666666666554

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.25  E-value=2.7e-11  Score=92.87  Aligned_cols=96  Identities=21%  Similarity=0.283  Sum_probs=71.0

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      .+|.+..+.+.+.+... ..+.+|||+|||+|..++.+++.  ..+|+++|.++.+++.+++|+..++.       .++.
T Consensus        69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-------~~~~  140 (251)
T TIGR03534        69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-------DNVT  140 (251)
T ss_pred             CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CeEE
Confidence            34566666666655432 24568999999999999999986  46999999999999999999988762       1344


Q ss_pred             EEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +...++...        ....+||+|++++|++.
T Consensus       141 ~~~~d~~~~--------~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534       141 FLQSDWFEP--------LPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             EEECchhcc--------CcCCceeEEEECCCCCc
Confidence            555444331        12468999999999765

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.25  E-value=9.4e-11  Score=93.28  Aligned_cols=110  Identities=12%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      -|++..... .+..+....++++|||+|||+|..+..++..+. .|+++|.++.++..++......+      ...++.+
T Consensus       104 ew~s~~k~~-~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~------~~~~i~~  176 (322)
T PRK15068        104 EWRSDWKWD-RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG------NDQRAHL  176 (322)
T ss_pred             eehHHhHHH-HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC------CCCCeEE
Confidence            355444322 223333335788999999999999999988774 69999999988765544322221      0123555


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ...+..+.       + ...+||+|++..++|+ .+...+++.+.+.
T Consensus       177 ~~~d~e~l-------p-~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~  215 (322)
T PRK15068        177 LPLGIEQL-------P-ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQ  215 (322)
T ss_pred             EeCCHHHC-------C-CcCCcCEEEECChhhccCCHHHHHHHHHHh
Confidence            54433321       1 1568999999999988 5566666666554

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.25  E-value=8.6e-11  Score=91.37  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=72.9

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      +.....+.+.+...+.+|.+|||||||.|.+++.+|+. |.+|+++.+|++..+.+++.+...++      ..++.+...
T Consensus        46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl------~~~v~v~~~  119 (273)
T PF02353_consen   46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL------EDRVEVRLQ  119 (273)
T ss_dssp             HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS------SSTEEEEES
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEEe
Confidence            33556667777777789999999999999999999987 99999999999999999999998873      345667666


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHH
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQ  178 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~  178 (180)
                      +|.+.          ..+||.|++-.++-+-   +....++.+.+
T Consensus       120 D~~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~  154 (273)
T PF02353_consen  120 DYRDL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISR  154 (273)
T ss_dssp             -GGG-------------S-SEEEEESEGGGTCGGGHHHHHHHHHH
T ss_pred             ecccc----------CCCCCEEEEEechhhcChhHHHHHHHHHHH
Confidence            66542          3499999999998774   33444554443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.25  E-value=1.5e-10  Score=87.73  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=60.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++...+..      .++.+...++..          ..+
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~------~~i~~~~~d~~~----------~~~  126 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA------GNITFEVGDLES----------LLG  126 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc------cCcEEEEcCchh----------ccC
Confidence            5679999999999999999988889999999999999999998776421      134444433221          246


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|+++.++++
T Consensus       127 ~fD~v~~~~~l~~  139 (230)
T PRK07580        127 RFDTVVCLDVLIH  139 (230)
T ss_pred             CcCEEEEcchhhc
Confidence            8999999998855

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.25  E-value=1.7e-10  Score=93.29  Aligned_cols=125  Identities=15%  Similarity=0.008  Sum_probs=87.9

Q ss_pred             EEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCH
Q 030274           28 TFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNE  106 (180)
Q Consensus        28 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~  106 (180)
                      .+.-.+..+.+..     ..+-.||..++  -.....++....   +|++||++.|-||.+|+.+|..|+ +|+.+|.|.
T Consensus       181 ~i~E~g~kf~v~~-----~~g~kTGfFlD--qR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~  250 (393)
T COG1092         181 VIEENGVKFLVDL-----VDGLKTGFFLD--QRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK  250 (393)
T ss_pred             EEEeCCeEEEEec-----CCcccceeeHH--hHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccH
Confidence            3444455555442     22334564333  333444454443   589999999999999999999987 999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh--CCCCCcEEEEccccccCCchhh
Q 030274          107 EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK--YPGGFDLILGADIYILYNRSLL  172 (180)
Q Consensus       107 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~~~~~l  172 (180)
                      .+++.+++|++.|+..          -....|...|.+..+...  ...+||+||..||-|-......
T Consensus       251 ~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~  308 (393)
T COG1092         251 RALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQE  308 (393)
T ss_pred             HHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccc
Confidence            9999999999999832          455677777766555332  3459999999999887544443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.24  E-value=1.1e-10  Score=101.57  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=63.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++++|||+|||+|.+++.+++.|+ +|+++|.|+.+++.+++|++.|+...     .++++...+.     +.. +....
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~-----~~v~~i~~D~-----~~~-l~~~~  606 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG-----RQHRLIQADC-----LAW-LKEAR  606 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-----cceEEEEccH-----HHH-HHHcC
Confidence            578999999999999999998875 69999999999999999999997320     1333443332     221 12225


Q ss_pred             CCCcEEEEccccccC
Q 030274          153 GGFDLILGADIYILY  167 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~  167 (180)
                      .+||+|+++||.+-.
T Consensus       607 ~~fDlIilDPP~f~~  621 (702)
T PRK11783        607 EQFDLIFIDPPTFSN  621 (702)
T ss_pred             CCcCEEEECCCCCCC
Confidence            689999999998763

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.24  E-value=7.8e-11  Score=90.90  Aligned_cols=94  Identities=14%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.......++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..            +.+...+....  
T Consensus        23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~~d~~~~--   88 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD------------CQFVEADIASW--   88 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC------------CeEEECchhcc--
Confidence            333333446789999999999999988875  57999999999999999887421            22333222211  


Q ss_pred             hhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          144 INKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                            ....+||+|+++.++.+ .+...+++.+..+
T Consensus        89 ------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~  119 (258)
T PRK01683         89 ------QPPQALDLIFANASLQWLPDHLELFPRLVSL  119 (258)
T ss_pred             ------CCCCCccEEEEccChhhCCCHHHHHHHHHHh
Confidence                  12358999999999866 5655666666554

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.23  E-value=6.8e-11  Score=91.19  Aligned_cols=86  Identities=13%  Similarity=0.145  Sum_probs=62.6

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++    +          +.+...+...      +  
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----------~~~~~~d~~~------~--   84 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----------VDARTGDVRD------W--   84 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----------CcEEEcChhh------C--
Confidence            346789999999999999998876  67999999999999998763    2          2233322211      1  


Q ss_pred             hCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          150 KYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ...++||+|+++.++++ .+...++..+.+.
T Consensus        85 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~  115 (255)
T PRK14103         85 KPKPDTDVVVSNAALQWVPEHADLLVRWVDE  115 (255)
T ss_pred             CCCCCceEEEEehhhhhCCCHHHHHHHHHHh
Confidence            12458999999999877 5656666665544

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.23  E-value=1.1e-10  Score=86.26  Aligned_cols=66  Identities=15%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             ecchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhc
Q 030274           55 VWPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .-|....+-+.+.... ...++.+||||+||+|.+|+.++..|+ +|+++|.++.+++.+++|++.++
T Consensus        29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~   96 (189)
T TIGR00095        29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK   96 (189)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            4555544444333221 224688999999999999999998875 89999999999999999999997

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.23  E-value=6.1e-13  Score=87.97  Aligned_cols=88  Identities=14%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             EEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274           79 LELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD  156 (180)
Q Consensus        79 LdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD  156 (180)
                      ||+|||+|..+..+...  ..+++++|+|+.+++.+++++.....         .....+.+...+....   ...++||
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~fD   68 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN---------DNFERLRFDVLDLFDY---DPPESFD   68 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------EEEEE--SSS---C---CC----S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---------cceeEEEeecCChhhc---ccccccc
Confidence            79999999998888776  68999999999999999888887641         1133444444332111   1225999


Q ss_pred             EEEEcccccc-CCchhhHHHHHH
Q 030274          157 LILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       157 ~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      +|+++.++++ .+....+..+.+
T Consensus        69 ~V~~~~vl~~l~~~~~~l~~~~~   91 (99)
T PF08242_consen   69 LVVASNVLHHLEDIEAVLRNIYR   91 (99)
T ss_dssp             EEEEE-TTS--S-HHHHHHHHTT
T ss_pred             eehhhhhHhhhhhHHHHHHHHHH
Confidence            9999999988 455555555543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.21  E-value=2.9e-10  Score=86.27  Aligned_cols=91  Identities=11%  Similarity=0.050  Sum_probs=64.1

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++|+..++.       .++.+...+.....       
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~~-------  109 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-------HNVELVHGNAMELP-------  109 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-------CceEEEEechhcCC-------
Confidence            36789999999999999988864   36999999999999999999877641       23444443333211       


Q ss_pred             hCCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274          150 KYPGGFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                      ...++||+|+++.++.+ .+...++..+.
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~  138 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMY  138 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHH
Confidence            12468999999887655 44444444433

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.21  E-value=2.2e-10  Score=87.08  Aligned_cols=103  Identities=15%  Similarity=0.223  Sum_probs=73.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ..+++.......++.+|||+|||+|.++..+++.+.+|+++|.++.+++.+++++..++.        .+.+...++...
T Consensus        36 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~  107 (233)
T PRK05134         36 RLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--------KIDYRQTTAEEL  107 (233)
T ss_pred             HHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--------ceEEEecCHHHh
Confidence            345666555455788999999999999999998888999999999999999999877641        233333322211


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                            .....++||+|+++.++.+ .+...++..+..
T Consensus       108 ------~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~  139 (233)
T PRK05134        108 ------AAEHPGQFDVVTCMEMLEHVPDPASFVRACAK  139 (233)
T ss_pred             ------hhhcCCCccEEEEhhHhhccCCHHHHHHHHHH
Confidence                  1123468999999988766 455555554443

>PRK06202 hypothetical protein; Provisional

Probab=99.21  E-value=2e-10  Score=87.34  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc----C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGILCSRF----C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~----~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ++.+|||+|||+|..+..+++.    |  .+|+++|.++.+++.++++...++          +.+...+-..   +   
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~~~~~~---l---  123 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----------VTFRQAVSDE---L---  123 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----------CeEEEEeccc---c---
Confidence            5679999999999988887752    3  599999999999999998865443          2233222211   1   


Q ss_pred             HhhCCCCCcEEEEccccccCCch
Q 030274          148 IQKYPGGFDLILGADIYILYNRS  170 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~~~~~  170 (180)
                       +...++||+|+++.++++-...
T Consensus       124 -~~~~~~fD~V~~~~~lhh~~d~  145 (232)
T PRK06202        124 -VAEGERFDVVTSNHFLHHLDDA  145 (232)
T ss_pred             -cccCCCccEEEECCeeecCChH
Confidence             1134689999999998875443

>PHA03412 putative methyltransferase; Provisional

Probab=99.20  E-value=3.1e-11  Score=91.03  Aligned_cols=73  Identities=15%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGILCSRF-----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+.+|||+|||+|.+++.+++.     ..+|+++|+++.+++.|++|+..            +.+...+....       
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~------------~~~~~~D~~~~-------  109 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE------------ATWINADALTT-------  109 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC------------CEEEEcchhcc-------
Confidence            4679999999999999988763     35899999999999999988532            22333332221       


Q ss_pred             hhCCCCCcEEEEcccccc
Q 030274          149 QKYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~  166 (180)
                       ....+||+||+|||++.
T Consensus       110 -~~~~~FDlIIsNPPY~~  126 (241)
T PHA03412        110 -EFDTLFDMAISNPPFGK  126 (241)
T ss_pred             -cccCCccEEEECCCCCC
Confidence             12458999999999986

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.20  E-value=5.5e-10  Score=76.25  Aligned_cols=85  Identities=13%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.......++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.+++|++.++.       .++.+...+....  
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~--   81 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-------SNIVIVEGDAPEA--   81 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-------CceEEEecccccc--
Confidence            333333345679999999999999998875  36999999999999999999988752       1233333322211  


Q ss_pred             hhHHHhhCCCCCcEEEEccc
Q 030274          144 INKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      .    .....+||+|++..+
T Consensus        82 ~----~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        82 L----EDSLPEPDRVFIGGS   97 (124)
T ss_pred             C----hhhcCCCCEEEECCc
Confidence            0    112358999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.20  E-value=1.5e-10  Score=89.42  Aligned_cols=91  Identities=12%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ...+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...         .++.+...+.
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---------~~v~ii~~D~   84 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---------GNVEIIEGDA   84 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---------CCEEEEEecc
Confidence            3445555555555557789999999999999999998889999999999999999887542         1355555554


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ...+         ...||.|++|.|++..
T Consensus        85 ~~~~---------~~~~d~Vv~NlPy~i~  104 (258)
T PRK14896         85 LKVD---------LPEFNKVVSNLPYQIS  104 (258)
T ss_pred             ccCC---------chhceEEEEcCCcccC
Confidence            4321         1358999999997763

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.20  E-value=1.1e-10  Score=77.53  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=55.0

Q ss_pred             EEEeCCcCChHHHHHhhcC-----CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           78 ILELGSGVGVTGILCSRFC-----REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        78 vLdlG~G~G~~~l~la~~~-----~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      |||+|||+|.....+++..     .+++++|+++++++.++++....+        .++++...++.+.       +...
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~--------~~~~~~~~D~~~l-------~~~~   65 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG--------PKVRFVQADARDL-------PFSD   65 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT--------TTSEEEESCTTCH-------HHHS
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC--------CceEEEECCHhHC-------cccC
Confidence            7999999999999888763     799999999999999999988754        1455666666442       1235


Q ss_pred             CCCcEEEEccc-cccCC
Q 030274          153 GGFDLILGADI-YILYN  168 (180)
Q Consensus       153 ~~fD~Ii~~d~-~y~~~  168 (180)
                      ++||+|+++.. +.+..
T Consensus        66 ~~~D~v~~~~~~~~~~~   82 (101)
T PF13649_consen   66 GKFDLVVCSGLSLHHLS   82 (101)
T ss_dssp             SSEEEEEE-TTGGGGSS
T ss_pred             CCeeEEEEcCCccCCCC
Confidence            69999999655 55543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.18  E-value=3e-10  Score=88.46  Aligned_cols=125  Identities=18%  Similarity=0.118  Sum_probs=78.5

Q ss_pred             eEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEec
Q 030274           25 QLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTD  103 (180)
Q Consensus        25 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D  103 (180)
                      ....+...|..+.|..     .+...||..+-  -.....++.+..   ++++||++.|-||.+|+.+++.|+ +|+.+|
T Consensus        84 ~~~~v~E~gl~f~v~l-----~~gqktGlFlD--qR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD  153 (286)
T PF10672_consen   84 EFFTVEENGLKFRVDL-----TDGQKTGLFLD--QRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVD  153 (286)
T ss_dssp             SEEEEEETTEEEEEES-----SSSSSTSS-GG--GHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEE
T ss_pred             CceEEEECCEEEEEEc-----CCCCcceEcHH--HHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEe
Confidence            3445667777776653     22334565333  333445555543   688999999999999999988885 899999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-hCCCCCcEEEEccccccCCc
Q 030274          104 HNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-KYPGGFDLILGADIYILYNR  169 (180)
Q Consensus       104 ~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~  169 (180)
                      .|..+++.+++|+..|+..     ..++.+.     ..+.+..+.. ...++||+||+.||-|-...
T Consensus       154 ~S~~al~~a~~N~~lNg~~-----~~~~~~~-----~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~  210 (286)
T PF10672_consen  154 SSKRALEWAKENAALNGLD-----LDRHRFI-----QGDVFKFLKRLKKGGRFDLIILDPPSFAKSK  210 (286)
T ss_dssp             S-HHHHHHHHHHHHHTT-C-----CTCEEEE-----ES-HHHHHHHHHHTT-EEEEEE--SSEESST
T ss_pred             CCHHHHHHHHHHHHHcCCC-----ccceEEE-----ecCHHHHHHHHhcCCCCCEEEECCCCCCCCH
Confidence            9999999999999999842     1223333     3333332211 12458999999999876443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.18  E-value=3e-10  Score=85.35  Aligned_cols=92  Identities=16%  Similarity=0.175  Sum_probs=64.9

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      +..+...+.+.....++.+|||+|||+|..+..+++..   .+|+++|.++++++.+++|++.++.       .++.+..
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-------~~v~~~~  133 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-------DNVEVIV  133 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCeEEEE
Confidence            34444555554455578899999999999999888752   6999999999999999999998762       2344444


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      .+-....       ....+||+|++.-..
T Consensus       134 gd~~~~~-------~~~~~fD~I~~~~~~  155 (212)
T PRK13942        134 GDGTLGY-------EENAPYDRIYVTAAG  155 (212)
T ss_pred             CCcccCC-------CcCCCcCEEEECCCc
Confidence            3322110       123689999887543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.18  E-value=4.9e-10  Score=86.77  Aligned_cols=96  Identities=18%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++.+|||+|||+|..+..+++. +  .+|+++|+|++|++.++++.......    ...++.+...+....       +
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~----~~~~i~~~~~d~~~l-------p  140 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS----CYKNIEWIEGDATDL-------P  140 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc----cCCCeEEEEcccccC-------C
Confidence            46779999999999999988875 3  59999999999999998876421100    012344444443321       1


Q ss_pred             hCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          150 KYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ...++||+|+++.++.+ .+....++.+.+.
T Consensus       141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rv  171 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRV  171 (261)
T ss_pred             CCCCCEeEEEEecccccCCCHHHHHHHHHHH
Confidence            23568999999998776 4555555555443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.18  E-value=2e-10  Score=91.77  Aligned_cols=93  Identities=15%  Similarity=0.053  Sum_probs=69.0

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ..++..+.......++.+|||+|||+|.+.+.++..+.+|+++|+++.++..++.|++.++..       ++.+...+..
T Consensus       168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-------~i~~~~~D~~  240 (329)
T TIGR01177       168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-------DFFVKRGDAT  240 (329)
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-------CCeEEecchh
Confidence            456666665544557789999999999999988888999999999999999999999988632       1333333332


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +.       +....+||+|+++||+-.
T Consensus       241 ~l-------~~~~~~~D~Iv~dPPyg~  260 (329)
T TIGR01177       241 KL-------PLSSESVDAIATDPPYGR  260 (329)
T ss_pred             cC-------CcccCCCCEEEECCCCcC
Confidence            21       112468999999998643

This family is found exclusively in the Archaea.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.18  E-value=3.2e-10  Score=83.49  Aligned_cols=77  Identities=19%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ...++.+|||+|||+|.+++.+++.+  .+|+++|.++.+++.+++|++.++.       .++.+...+   ..  .   
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-------~~i~~~~~d---~~--~---   92 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-------GNIDIIPGE---AP--I---   92 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------CCeEEEecC---ch--h---
Confidence            33467899999999999999988763  6999999999999999999988752       123333322   11  0   


Q ss_pred             hhCCCCCcEEEEccc
Q 030274          149 QKYPGGFDLILGADI  163 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~  163 (180)
                       ....+||+|+++..
T Consensus        93 -~~~~~~D~v~~~~~  106 (187)
T PRK08287         93 -ELPGKADAIFIGGS  106 (187)
T ss_pred             -hcCcCCCEEEECCC
Confidence             12457999998754

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.17  E-value=1.9e-10  Score=82.69  Aligned_cols=98  Identities=23%  Similarity=0.347  Sum_probs=71.4

Q ss_pred             cCCcCceecchH---HHHHHHHhhCCC---CCCCC-eEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHH
Q 030274           48 FDLTGQLVWPGA---MLMNDYLSKNPD---VLQAS-SILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        48 ~~~~g~~~w~~~---~~l~~~l~~~~~---~~~~~-~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ++..|- +|.+.   ..+.+||..+..   ..+.. +|||||||.|.+-.-|++.+  .+.+++|+++.++++|+..++.
T Consensus        35 hgd~GE-vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~  113 (227)
T KOG1271|consen   35 HGDEGE-VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER  113 (227)
T ss_pred             CCCccc-eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh
Confidence            555554 77655   678888876543   22333 99999999999988888876  4699999999999999877777


Q ss_pred             hcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEE
Q 030274          119 HTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLIL  159 (180)
Q Consensus       119 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii  159 (180)
                      ++.+      ..+++.+++...++-       ..++||+|+
T Consensus       114 ~~~~------n~I~f~q~DI~~~~~-------~~~qfdlvl  141 (227)
T KOG1271|consen  114 DGFS------NEIRFQQLDITDPDF-------LSGQFDLVL  141 (227)
T ss_pred             cCCC------cceeEEEeeccCCcc-------cccceeEEe
Confidence            7632      237788888777532       234566554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.17  E-value=4.8e-10  Score=86.13  Aligned_cols=91  Identities=10%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++.+|||+|||+|..++.+++    .+.+|+++|.|+.|++.+++++..++.      ..++.+...+....        
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~------~~~v~~~~~d~~~~--------  121 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA------PTPVDVIEGDIRDI--------  121 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------CCCeEEEeCChhhC--------
Confidence            567999999999999887776    257999999999999999999987652      12344544333321        


Q ss_pred             hCCCCCcEEEEccccccCCc---hhhHHHHHHh
Q 030274          150 KYPGGFDLILGADIYILYNR---SLLMTSFFQA  179 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~a  179 (180)
                       ....+|+|+++-++++-..   ..+++.+.++
T Consensus       122 -~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~  153 (247)
T PRK15451        122 -AIENASMVVLNFTLQFLEPSERQALLDKIYQG  153 (247)
T ss_pred             -CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHh
Confidence             1246999999988766332   3444544443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.16  E-value=2.5e-10  Score=86.55  Aligned_cols=89  Identities=13%  Similarity=0.210  Sum_probs=66.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||||-+++.+++..  .+|+++|+|+.|++.+++.+...+.          ....+.-++.+.    ++..
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----------~~i~fv~~dAe~----LPf~  116 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----------QNVEFVVGDAEN----LPFP  116 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc----------cceEEEEechhh----CCCC
Confidence            78899999999999999999875  7999999999999999999887641          112233333333    2346


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHH
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSF  176 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~  176 (180)
                      +.+||+|.++-.+-+ .+....++-+
T Consensus       117 D~sFD~vt~~fglrnv~d~~~aL~E~  142 (238)
T COG2226         117 DNSFDAVTISFGLRNVTDIDKALKEM  142 (238)
T ss_pred             CCccCEEEeeehhhcCCCHHHHHHHH
Confidence            789999999998876 4544444433

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.16  E-value=1.6e-10  Score=90.88  Aligned_cols=100  Identities=13%  Similarity=0.262  Sum_probs=74.1

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .+.++...+++++|||+|||||++++..|+.|+ +|+++|.+ ++.+.+++.+..|+..      ..+++.+-   ..++
T Consensus        51 ~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~------~ii~vi~g---kvEd  120 (346)
T KOG1499|consen   51 AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE------DVITVIKG---KVED  120 (346)
T ss_pred             HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc------ceEEEeec---ceEE
Confidence            355666778999999999999999999999985 89999997 5679999999999843      22334333   2222


Q ss_pred             hhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          144 INKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      + . +  +..+.|+|++-.+-|..-.+..+++++-
T Consensus       121 i-~-L--P~eKVDiIvSEWMGy~Ll~EsMldsVl~  151 (346)
T KOG1499|consen  121 I-E-L--PVEKVDIIVSEWMGYFLLYESMLDSVLY  151 (346)
T ss_pred             E-e-c--CccceeEEeehhhhHHHHHhhhhhhhhh
Confidence            2 1 1  2479999999999888655555665543

>PRK08317 hypothetical protein; Provisional

Probab=99.16  E-value=6.9e-10  Score=84.07  Aligned_cols=108  Identities=14%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      |-...+.+.+.......++.+|||+|||+|..+..+++.   ..+|+++|.++.+++.++++.....        .++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~--------~~~~~   73 (241)
T PRK08317          2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG--------PNVEF   73 (241)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC--------CceEE
Confidence            344445555555555557789999999999999988864   3699999999999999998833221        23444


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ...+.....       ...++||+|+++.++.+ .+...+++.+.++
T Consensus        74 ~~~d~~~~~-------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~  113 (241)
T PRK08317         74 VRGDADGLP-------FPDGSFDAVRSDRVLQHLEDPARALAEIARV  113 (241)
T ss_pred             EecccccCC-------CCCCCceEEEEechhhccCCHHHHHHHHHHH
Confidence            444433221       12468999999998765 5655566655543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.16  E-value=1.7e-10  Score=89.79  Aligned_cols=89  Identities=13%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|.++.+++.+++|+...          ++.+...++..
T Consensus        29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~----------~v~~i~~D~~~   98 (272)
T PRK00274         29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAED----------NLTIIEGDALK   98 (272)
T ss_pred             HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccC----------ceEEEEChhhc
Confidence            34555555545557789999999999999999998889999999999999999876431          35566666554


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .+ +.      ...++.|++|.|+|.
T Consensus        99 ~~-~~------~~~~~~vv~NlPY~i  117 (272)
T PRK00274         99 VD-LS------ELQPLKVVANLPYNI  117 (272)
T ss_pred             CC-HH------HcCcceEEEeCCccc
Confidence            32 11      111699999999766

>PHA03411 putative methyltransferase; Provisional

Probab=99.15  E-value=1.8e-10  Score=88.76  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSD  128 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~  128 (180)
                      .|...-|.+.. ..++...   ....+|||+|||+|.+++.+++.  +.+|+++|+++.+++.+++|+.           
T Consensus        45 ~G~FfTP~~i~-~~f~~~~---~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------  109 (279)
T PHA03411         45 SGAFFTPEGLA-WDFTIDA---HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------  109 (279)
T ss_pred             ceeEcCCHHHH-HHHHhcc---ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------
Confidence            35555555543 2344322   13468999999999999888764  4699999999999999998732           


Q ss_pred             CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                       ++.+...+...      .  ....+||+|+++||+++..
T Consensus       110 -~v~~v~~D~~e------~--~~~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411        110 -EAEWITSDVFE------F--ESNEKFDVVISNPPFGKIN  140 (279)
T ss_pred             -CCEEEECchhh------h--cccCCCcEEEEcCCccccC
Confidence             12232222221      1  1235899999999998743

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.15  E-value=6.1e-10  Score=83.60  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +..++.......++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++|++.++.       .++.+...+....
T Consensus        66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~  138 (212)
T PRK00312         66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-------HNVSVRHGDGWKG  138 (212)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-------CceEEEECCcccC
Confidence            444444444445778999999999999998888877999999999999999999988752       1244444433221


Q ss_pred             chhhHHHhhCCCCCcEEEEcccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                        .     ...++||+|++....
T Consensus       139 --~-----~~~~~fD~I~~~~~~  154 (212)
T PRK00312        139 --W-----PAYAPFDRILVTAAA  154 (212)
T ss_pred             --C-----CcCCCcCEEEEccCc
Confidence              0     013589999987654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.15  E-value=6e-10  Score=84.82  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      +.|..  .+.+.+.    ..++.+|||+|||||.++..+++. +  .+|+++|+|+.|++.+++++...+.       .+
T Consensus        33 ~~wr~--~~~~~~~----~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-------~~   99 (233)
T PF01209_consen   33 RRWRR--KLIKLLG----LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-------QN   99 (233)
T ss_dssp             ----S--HHHHHHT------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------S
T ss_pred             HHHHH--HHHhccC----CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-------CC
Confidence            46766  4444432    236779999999999999988875 3  6999999999999999999988751       13


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHH
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSF  176 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~  176 (180)
                      +.....+-.+       ++...++||+|+++-.+.+ .+....++-+
T Consensus       100 i~~v~~da~~-------lp~~d~sfD~v~~~fglrn~~d~~~~l~E~  139 (233)
T PF01209_consen  100 IEFVQGDAED-------LPFPDNSFDAVTCSFGLRNFPDRERALREM  139 (233)
T ss_dssp             EEEEE-BTTB---------S-TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred             eeEEEcCHHH-------hcCCCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence            4444333332       2234679999999998866 4544444433

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.15  E-value=4.6e-10  Score=84.69  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++..++.       .++.+...+...      ......
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~~d~~~------~~~~~~  110 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-------LKIEYRCTSVED------LAEKGA  110 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------CceEEEeCCHHH------hhcCCC
Confidence            4578999999999999999888888999999999999999999887651       012232222211      111123


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ++||+|+++.++++ .+...+++.+.+
T Consensus       111 ~~~D~i~~~~~l~~~~~~~~~l~~~~~  137 (224)
T TIGR01983       111 KSFDVVTCMEVLEHVPDPQAFIRACAQ  137 (224)
T ss_pred             CCccEEEehhHHHhCCCHHHHHHHHHH
Confidence            68999999998876 455555554443

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05785 hypothetical protein; Provisional

Probab=99.14  E-value=5.2e-10  Score=84.83  Aligned_cols=83  Identities=14%  Similarity=0.152  Sum_probs=59.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||||..+..+++. +.+|+++|.|++|++.++++.   .            ....+...       ++...
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---~------------~~~~d~~~-------lp~~d  108 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---D------------KVVGSFEA-------LPFRD  108 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---c------------eEEechhh-------CCCCC
Confidence            3569999999999999999887 579999999999999988641   1            12222221       12235


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ++||+|+++..+.+ .+....++.+.+
T Consensus       109 ~sfD~v~~~~~l~~~~d~~~~l~e~~R  135 (226)
T PRK05785        109 KSFDVVMSSFALHASDNIEKVIAEFTR  135 (226)
T ss_pred             CCEEEEEecChhhccCCHHHHHHHHHH
Confidence            78999999998866 455555555443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.14  E-value=3.2e-10  Score=89.00  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=69.4

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..++.      ..++.+..-|+..
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~------~~~v~ii~~Dal~   96 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL------ASKLEVIEGDALK   96 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC------CCcEEEEECCHhh
Confidence            3455555555555778999999999999999998888999999999999999999876541      1245555544433


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      .         ....||.|++|.|+|...
T Consensus        97 ~---------~~~~~d~VvaNlPY~Ist  115 (294)
T PTZ00338         97 T---------EFPYFDVCVANVPYQISS  115 (294)
T ss_pred             h---------cccccCEEEecCCcccCc
Confidence            2         124689999999888743

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.14  E-value=2e-10  Score=81.96  Aligned_cols=83  Identities=16%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.      .+           .......-..       .....
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-----------~~~~~~~~~~-------~~~~~   76 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-----------VVFDNFDAQD-------PPFPD   76 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-----------SEEEEEECHT-------HHCHS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-----------hhhhhhhhhh-------hhccc
Confidence            467899999999999999999889999999999998888      21           1112111111       11235


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ++||+|+++.++++ .+....++.+.+.
T Consensus        77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~  104 (161)
T PF13489_consen   77 GSFDLIICNDVLEHLPDPEEFLKELSRL  104 (161)
T ss_dssp             SSEEEEEEESSGGGSSHHHHHHHHHHHC
T ss_pred             cchhhHhhHHHHhhcccHHHHHHHHHHh
Confidence            79999999999988 5666666666553

...

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.13  E-value=4.8e-10  Score=84.68  Aligned_cols=90  Identities=13%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             CeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++...+.      ..++.+...+.....        ..+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl------~~~i~~~~~d~~~~~--------~~~   66 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL------QGRIRIFYRDSAKDP--------FPD   66 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC------CcceEEEecccccCC--------CCC
Confidence            47999999999999888875  36999999999999999999987652      234555555543321        235


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +||+|++..++++ .+....++.+.+.
T Consensus        67 ~fD~I~~~~~l~~~~~~~~~l~~~~~~   93 (224)
T smart00828       67 TYDLVFGFEVIHHIKDKMDLFSNISRH   93 (224)
T ss_pred             CCCEeehHHHHHhCCCHHHHHHHHHHH
Confidence            8999999998877 4555555555443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.13  E-value=1e-10  Score=85.87  Aligned_cols=114  Identities=21%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             ceecchHHHHHHHHhhCCC--CCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           53 QLVWPGAMLMNDYLSKNPD--VLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        53 ~~~w~~~~~l~~~l~~~~~--~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      ..+-|.+..+-+.+-....  ..++.++|||.||||.+|+.+...| .+|+++|.++.++..+++|++..+..      .
T Consensus        19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~------~   92 (183)
T PF03602_consen   19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE------D   92 (183)
T ss_dssp             -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G------G
T ss_pred             CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC------c
Confidence            3455666555444433221  1588999999999999999776665 69999999999999999999987622      1


Q ss_pred             cEEEEEeecCCCchhhHHHh--hCCCCCcEEEEccccccCCc-hhhHHHHH
Q 030274          130 GLAVAKLEWGNSDQINKIIQ--KYPGGFDLILGADIYILYNR-SLLMTSFF  177 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~--~~~~~fD~Ii~~d~~y~~~~-~~l~~~~~  177 (180)
                      ++.+...+     ....+..  ....+||+|++.||+..... ..++..+.
T Consensus        93 ~~~v~~~d-----~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~  138 (183)
T PF03602_consen   93 KIRVIKGD-----AFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA  138 (183)
T ss_dssp             GEEEEESS-----HHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred             ceeeeccC-----HHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence            23333222     1222211  24679999999999877553 55565554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.13  E-value=8.1e-10  Score=85.95  Aligned_cols=94  Identities=19%  Similarity=0.235  Sum_probs=65.6

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++.+|||+|||+|..++.+++. +  .+|+++|.++.+++.+++|....+.       .++.+...++...       
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-------~~v~~~~~d~~~l-------  140 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-------TNVEFRLGEIEAL-------  140 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-------CCEEEEEcchhhC-------
Confidence            347789999999999988877664 3  4799999999999999999887752       1344443333221       


Q ss_pred             hhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          149 QKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +...++||+|+++.++++ .+....++.+.+.
T Consensus       141 ~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~  172 (272)
T PRK11873        141 PVADNSVDVIISNCVINLSPDKERVFKEAFRV  172 (272)
T ss_pred             CCCCCceeEEEEcCcccCCCCHHHHHHHHHHH
Confidence            113458999999988766 3444555555443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.11  E-value=7.8e-10  Score=89.98  Aligned_cols=84  Identities=14%  Similarity=0.250  Sum_probs=61.7

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      ..+.+.....++.+|||+|||+|..++.+++. +.+|+++|+|+++++.+++++...          .+.+...++..  
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----------~v~~~~~D~~~--  224 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----------PVEIRLQDYRD--  224 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----------eEEEEECchhh--
Confidence            34444444557889999999999999988875 789999999999999999987421          13333333321  


Q ss_pred             hhhHHHhhCCCCCcEEEEccccccC
Q 030274          143 QINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                              ..++||.|++..++.+-
T Consensus       225 --------l~~~fD~Ivs~~~~ehv  241 (383)
T PRK11705        225 --------LNGQFDRIVSVGMFEHV  241 (383)
T ss_pred             --------cCCCCCEEEEeCchhhC
Confidence                    14689999999987763

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.09  E-value=3e-09  Score=79.07  Aligned_cols=81  Identities=21%  Similarity=0.300  Sum_probs=58.3

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ....++.+|||+|||+|.+++.+++.   +.+|+++|.++.+++.+++|+..++.      ..++.+...+..+      
T Consensus        36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~------~~~v~~~~~d~~~------  103 (198)
T PRK00377         36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV------LNNIVLIKGEAPE------  103 (198)
T ss_pred             cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCCeEEEEechhh------
Confidence            34557889999999999999988764   36899999999999999999998862      1234444333221      


Q ss_pred             HHhhCCCCCcEEEEcc
Q 030274          147 IIQKYPGGFDLILGAD  162 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d  162 (180)
                      ..+....+||.|+++.
T Consensus       104 ~l~~~~~~~D~V~~~~  119 (198)
T PRK00377        104 ILFTINEKFDRIFIGG  119 (198)
T ss_pred             hHhhcCCCCCEEEECC
Confidence            1122345899999853

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.09  E-value=2e-09  Score=81.64  Aligned_cols=92  Identities=14%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..+..+++.+   .+|+++|.++.+++.+++++..++.      ..++.+...++....       .
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~-------~  117 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL------SGNVEFVQGDAEALP-------F  117 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc------ccCeEEEecccccCC-------C
Confidence            56799999999999999888764   7999999999999999999876431      123445554444321       1


Q ss_pred             CCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          151 YPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ..+.||+|+++.++.+ .+...++..+..
T Consensus       118 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~  146 (239)
T PRK00216        118 PDNSFDAVTIAFGLRNVPDIDKALREMYR  146 (239)
T ss_pred             CCCCccEEEEecccccCCCHHHHHHHHHH
Confidence            2468999999887655 444455554443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.08  E-value=8.6e-10  Score=82.26  Aligned_cols=79  Identities=18%  Similarity=0.050  Sum_probs=57.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .+.+|||+|||+|..+..+++.  +.+|+++|.++.+++.+++|+..++.       .++.+...++.  +.+...  ..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-------~~v~~~~~d~~--~~l~~~--~~  108 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-------TNLRLLCGDAV--EVLLDM--FP  108 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-------CCEEEEecCHH--HHHHHH--cC
Confidence            4679999999999999988875  46899999999999999999988752       23444443330  111110  23


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      .++||+|+++.+
T Consensus       109 ~~~~D~V~~~~~  120 (202)
T PRK00121        109 DGSLDRIYLNFP  120 (202)
T ss_pred             ccccceEEEECC
Confidence            568999998754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.07  E-value=1.9e-10  Score=86.05  Aligned_cols=118  Identities=18%  Similarity=0.287  Sum_probs=72.8

Q ss_pred             cccCCCceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C
Q 030274           18 FFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C   96 (180)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~   96 (180)
                      .|++..+.  ...+.+..+.|..           |..+  ++..+...+.+.....++.+|||||||+|+.+..+++. +
T Consensus        31 ~Fvp~~~~--~~aY~d~~l~i~~-----------~~~i--s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg   95 (209)
T PF01135_consen   31 DFVPPAFR--DLAYEDRPLPIGC-----------GQTI--SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVG   95 (209)
T ss_dssp             GCSSCGGG--GGTTSSS-EEEET-----------TEEE----HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHS
T ss_pred             HhCchhhh--cCCCCCCCeeecc-----------eeec--hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcC
Confidence            45555544  3445566676662           2211  22223333344444568899999999999999999986 3


Q ss_pred             --CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274           97 --REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus        97 --~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                        .+|+++|.++.+.+.|++|+...+.       .++.+...+-...     +  ....+||.|+.+-.+
T Consensus        96 ~~g~Vv~vE~~~~l~~~A~~~l~~~~~-------~nv~~~~gdg~~g-----~--~~~apfD~I~v~~a~  151 (209)
T PF01135_consen   96 PVGRVVSVERDPELAERARRNLARLGI-------DNVEVVVGDGSEG-----W--PEEAPFDRIIVTAAV  151 (209)
T ss_dssp             TTEEEEEEESBHHHHHHHHHHHHHHTT-------HSEEEEES-GGGT-----T--GGG-SEEEEEESSBB
T ss_pred             ccceEEEECccHHHHHHHHHHHHHhcc-------CceeEEEcchhhc-----c--ccCCCcCEEEEeecc
Confidence              3799999999999999999998862       2455544332211     1  123589999998755

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00740 methyltransferase, putative

Probab=99.07  E-value=1.8e-09  Score=82.50  Aligned_cols=79  Identities=10%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++.+|||+|||+|..+..+++.    +.+|+++|+++.+++.|++++...+.      ..++.+...++...        
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~------~~~v~~~~~d~~~~--------  118 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS------EIPVEILCNDIRHV--------  118 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------CCCeEEEECChhhC--------
Confidence            5679999999999999888763    57899999999999999999876531      12344554444332        


Q ss_pred             hCCCCCcEEEEccccccC
Q 030274          150 KYPGGFDLILGADIYILY  167 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~  167 (180)
                       ....+|+|+++.++.+.
T Consensus       119 -~~~~~d~v~~~~~l~~~  135 (239)
T TIGR00740       119 -EIKNASMVILNFTLQFL  135 (239)
T ss_pred             -CCCCCCEEeeecchhhC
Confidence             12468999998887663

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.06  E-value=1.6e-09  Score=86.49  Aligned_cols=88  Identities=11%  Similarity=0.102  Sum_probs=61.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||||||+|..++.+++.  +.+|+++|.++.+++.++++...++          +.+...+..+.       +..
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~----------i~~i~gD~e~l-------p~~  175 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----------CKIIEGDAEDL-------PFP  175 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccC----------CeEEeccHHhC-------CCC
Confidence            5679999999999999888764  4699999999999999998865332          33333322211       113


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      .++||+|+++.++.+ .+....++.+.+
T Consensus       176 ~~sFDvVIs~~~L~~~~d~~~~L~e~~r  203 (340)
T PLN02490        176 TDYADRYVSAGSIEYWPDPQRGIKEAYR  203 (340)
T ss_pred             CCceeEEEEcChhhhCCCHHHHHHHHHH
Confidence            468999999998765 455555555444

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.05  E-value=1.4e-09  Score=82.43  Aligned_cols=87  Identities=16%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .+.+|||+|||+|..+..+++.+  .+|+++|.++.+++.++.+...           ++.+...+.....       ..
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~-------~~   95 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----------NVQFICGDAEKLP-------LE   95 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----------CCeEEecchhhCC-------CC
Confidence            45789999999999999888865  5789999999999988876542           1334443333221       13


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      .++||+|+++.++++ .+....+..+.+
T Consensus        96 ~~~fD~vi~~~~l~~~~~~~~~l~~~~~  123 (240)
T TIGR02072        96 DSSFDLIVSNLALQWCDDLSQALSELAR  123 (240)
T ss_pred             CCceeEEEEhhhhhhccCHHHHHHHHHH
Confidence            468999999999877 455555555544

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.03  E-value=1.2e-09  Score=85.46  Aligned_cols=95  Identities=15%  Similarity=0.291  Sum_probs=72.8

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +.++...++++.|||+|||+|+++..+|+.| ++|++++.| +|.+.|++-++.|+.      ..++.+.+....+.+  
T Consensus       169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~------~~rItVI~GKiEdie--  239 (517)
T KOG1500|consen  169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL------ADRITVIPGKIEDIE--  239 (517)
T ss_pred             HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc------cceEEEccCcccccc--
Confidence            3345556899999999999999999999987 599999996 699999999998863      456777665555442  


Q ss_pred             hHHHhhCCCCCcEEEEccccccCCchhhHHH
Q 030274          145 NKIIQKYPGGFDLILGADIYILYNRSLLMTS  175 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~  175 (180)
                            .+++.|+||+-|+-|.-..+..+++
T Consensus       240 ------LPEk~DviISEPMG~mL~NERMLEs  264 (517)
T KOG1500|consen  240 ------LPEKVDVIISEPMGYMLVNERMLES  264 (517)
T ss_pred             ------CchhccEEEeccchhhhhhHHHHHH
Confidence                  4679999999999777333333333

>PRK04148 hypothetical protein; Provisional

Probab=98.99  E-value=3.7e-09  Score=73.22  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCCh-HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGV-TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~-~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      .+++|+.++....++.+|||+|||+|. ++..+++.|.+|+++|.++.+++.++++    +          +.+..-|+.
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~----------~~~v~dDlf   68 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G----------LNAFVDDLF   68 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C----------CeEEECcCC
Confidence            367777776544466899999999996 8999999999999999999988888766    2          336666776


Q ss_pred             CCchhhHHHhhCCCCCcEEEEccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      +.+.      ..-+.+|+|-+.-|
T Consensus        69 ~p~~------~~y~~a~liysirp   86 (134)
T PRK04148         69 NPNL------EIYKNAKLIYSIRP   86 (134)
T ss_pred             CCCH------HHHhcCCEEEEeCC
Confidence            6541      11246777776554

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.9e-09  Score=74.86  Aligned_cols=87  Identities=20%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +......++|++++|||||+|.+++..+-.+ ..|+++|+++++++.+++|++.-..+        +.+.+.+..+..  
T Consensus        40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--------idlLqcdildle--  109 (185)
T KOG3420|consen   40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--------IDLLQCDILDLE--  109 (185)
T ss_pred             HHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--------hheeeeeccchh--
Confidence            3334456799999999999999998777765 58999999999999999999887522        334444443321  


Q ss_pred             hHHHhhCCCCCcEEEEccccccC
Q 030274          145 NKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                           ...+.||..+.+||+--.
T Consensus       110 -----~~~g~fDtaviNppFGTk  127 (185)
T KOG3420|consen  110 -----LKGGIFDTAVINPPFGTK  127 (185)
T ss_pred             -----ccCCeEeeEEecCCCCcc
Confidence                 134789999999998653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.99  E-value=4.8e-09  Score=78.85  Aligned_cols=99  Identities=8%  Similarity=-0.044  Sum_probs=63.6

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCC--------CCCCC
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSEN--------PNSDA  129 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~--------~~~~~  129 (180)
                      ....|.+++..... .++.+|||+|||.|.-++.+|+.|.+|+++|+|+.+++.+..   .++....        .....
T Consensus        19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~   94 (213)
T TIGR03840        19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG   94 (213)
T ss_pred             CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence            34667777665421 256799999999999999999999999999999999997633   2221100        00112


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ++++...+....+.      ...++||.|+-.-++.+
T Consensus        95 ~v~~~~~D~~~~~~------~~~~~fD~i~D~~~~~~  125 (213)
T TIGR03840        95 NIEIFCGDFFALTA------ADLGPVDAVYDRAALIA  125 (213)
T ss_pred             ceEEEEccCCCCCc------ccCCCcCEEEechhhcc
Confidence            34444444433211      11357999998876554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.98  E-value=1.2e-09  Score=80.60  Aligned_cols=87  Identities=14%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ...+|.|||||+|..+-.+++.  ++.++++|.|++|++.|++..-.            +++...+....        ..
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------------~~f~~aDl~~w--------~p   89 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------------ATFEEADLRTW--------KP   89 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------------CceecccHhhc--------CC
Confidence            5569999999999999888875  68999999999999999765222            22332222221        13


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHHHHhC
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSFFQAI  180 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~al  180 (180)
                      ....|+|++|-++.+ +++..++..+...|
T Consensus        90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L  119 (257)
T COG4106          90 EQPTDLLFANAVLQWLPDHPELLPRLVSQL  119 (257)
T ss_pred             CCccchhhhhhhhhhccccHHHHHHHHHhh
Confidence            458999999999988 89999999887654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.98  E-value=3.6e-09  Score=88.49  Aligned_cols=82  Identities=21%  Similarity=0.260  Sum_probs=59.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||||||+|..+..+++.+.+|+++|+++.+++.++..   ++      ...++.+...+.....     .+...
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~---~~------~~~~i~~~~~d~~~~~-----~~~~~  101 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI---NG------HYKNVKFMCADVTSPD-----LNISD  101 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH---hc------cCCceEEEEecccccc-----cCCCC
Confidence            3567999999999999999999888999999999999876542   21      0123555555543221     11134


Q ss_pred             CCCcEEEEccccccCC
Q 030274          153 GGFDLILGADIYILYN  168 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~  168 (180)
                      .+||+|+++.++++-.
T Consensus       102 ~~fD~I~~~~~l~~l~  117 (475)
T PLN02336        102 GSVDLIFSNWLLMYLS  117 (475)
T ss_pred             CCEEEEehhhhHHhCC
Confidence            6899999999988743

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.97  E-value=5.2e-09  Score=83.12  Aligned_cols=88  Identities=15%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      +..++.+..+..++.+|||+|||+|..++.+++..   .+|+++|.++++++.+++|++.++.       .++.+...+.
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-------~nV~~i~gD~  140 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-------ENVIFVCGDG  140 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CcEEEEeCCh
Confidence            33334444444567899999999999999998753   3699999999999999999998862       2333333222


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEccc
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      ...      . ....+||+|+++..
T Consensus       141 ~~~------~-~~~~~fD~Ii~~~g  158 (322)
T PRK13943        141 YYG------V-PEFAPYDVIFVTVG  158 (322)
T ss_pred             hhc------c-cccCCccEEEECCc
Confidence            111      0 11247999998643

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.97  E-value=1.1e-08  Score=75.81  Aligned_cols=56  Identities=18%  Similarity=0.376  Sum_probs=46.3

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .+.......++.+|||+|||+|.+++.+++.  +.+|+++|.++.+++.+++|++.++
T Consensus        31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~   88 (196)
T PRK07402         31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG   88 (196)
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            3333334446789999999999999988864  4799999999999999999998876

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.96  E-value=4.5e-09  Score=81.02  Aligned_cols=90  Identities=18%  Similarity=0.222  Sum_probs=64.7

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ...+.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|.++.+++.++.++...         .++.+...+.
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~---------~~v~v~~~D~   84 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY---------ERLEVIEGDA   84 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC---------CcEEEEECch
Confidence            3344555555544557789999999999999999998889999999999999999876432         2355555555


Q ss_pred             CCCchhhHHHhhCCCCCc---EEEEcccccc
Q 030274          139 GNSDQINKIIQKYPGGFD---LILGADIYIL  166 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD---~Ii~~d~~y~  166 (180)
                      ...+.         ..+|   +|++|.|++.
T Consensus        85 ~~~~~---------~~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        85 LKVDL---------PDFPKQLKVVSNLPYNI  106 (253)
T ss_pred             hcCCh---------hHcCCcceEEEcCChhh
Confidence            44321         1355   8999988654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.95  E-value=5e-10  Score=83.34  Aligned_cols=83  Identities=23%  Similarity=0.263  Sum_probs=58.2

Q ss_pred             CCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-hCCC
Q 030274           75 ASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-KYPG  153 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (180)
                      -+++||||||||+.|..+-.+..+.+++|+|..|++.+.+.=--               ..+-  ..+ ...+++ ....
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y---------------D~L~--~Ae-a~~Fl~~~~~e  187 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY---------------DTLY--VAE-AVLFLEDLTQE  187 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch---------------HHHH--HHH-HHHHhhhccCC
Confidence            46999999999999999998889999999999999988764111               1110  011 111222 3567


Q ss_pred             CCcEEEEcccc-ccCCchhhHHH
Q 030274          154 GFDLILGADIY-ILYNRSLLMTS  175 (180)
Q Consensus       154 ~fD~Ii~~d~~-y~~~~~~l~~~  175 (180)
                      +||+|.+.||+ |--+-..++..
T Consensus       188 r~DLi~AaDVl~YlG~Le~~~~~  210 (287)
T COG4976         188 RFDLIVAADVLPYLGALEGLFAG  210 (287)
T ss_pred             cccchhhhhHHHhhcchhhHHHH
Confidence            99999999996 54554444443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.95  E-value=1.2e-08  Score=79.36  Aligned_cols=94  Identities=13%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ..+|++|||||||.|+.+..+++.|+ .|+++|.+....-..+.--...+.        ...+..+..+    ++.+ +.
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~--------~~~~~~lplg----vE~L-p~  179 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ--------DPPVFELPLG----VEDL-PN  179 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC--------CccEEEcCcc----hhhc-cc
Confidence            46899999999999999999998875 799999987543332211111110        0112222222    1111 22


Q ss_pred             CCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          151 YPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                       .+.||+|++--|+|| .++-..+..+.++
T Consensus       180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~  208 (315)
T PF08003_consen  180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDS  208 (315)
T ss_pred             -cCCcCEEEEeeehhccCCHHHHHHHHHHh
Confidence             468999999999999 5555556555543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.94  E-value=4.4e-09  Score=80.21  Aligned_cols=80  Identities=13%  Similarity=0.145  Sum_probs=56.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +.++|||+|||+|+.++++++.   ..+|+++|.++++++.|++|++.++..      .++++...+..+.  +..+...
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~------~~i~~~~gda~~~--L~~l~~~  139 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD------HKINFIQSDALSA--LDQLLNN  139 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEEccHHHH--HHHHHhC
Confidence            6779999999999988888763   369999999999999999999999732      2344444333221  1221111


Q ss_pred             -CCCCCcEEEEc
Q 030274          151 -YPGGFDLILGA  161 (180)
Q Consensus       151 -~~~~fD~Ii~~  161 (180)
                       ..++||+|+..
T Consensus       140 ~~~~~fD~VfiD  151 (234)
T PLN02781        140 DPKPEFDFAFVD  151 (234)
T ss_pred             CCCCCCCEEEEC
Confidence             13579998875

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.94  E-value=1.1e-08  Score=83.21  Aligned_cols=74  Identities=27%  Similarity=0.357  Sum_probs=54.4

Q ss_pred             CCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           75 ASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      +.+|||++||+|..|+.+++. + .+|+++|.++.+++.+++|++.|+..       ++.+.     ..+. ..++.. .
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-------~~~v~-----~~Da-~~~l~~-~  123 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-------NEKVF-----NKDA-NALLHE-E  123 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------ceEEE-----hhhH-HHHHhh-c
Confidence            458999999999999999875 3 48999999999999999999999732       12222     2221 111111 4


Q ss_pred             CCCcEEEEcc
Q 030274          153 GGFDLILGAD  162 (180)
Q Consensus       153 ~~fD~Ii~~d  162 (180)
                      .+||+|+..|
T Consensus       124 ~~fD~V~lDP  133 (382)
T PRK04338        124 RKFDVVDIDP  133 (382)
T ss_pred             CCCCEEEECC
Confidence            5799999976

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.92  E-value=4.3e-09  Score=76.82  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=59.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||||||.|.+-..+.+ ++.++.++|++++.+..+.++    |          +.+.+.+....  +..   ..+
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----------v~Viq~Dld~g--L~~---f~d   73 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----------VSVIQGDLDEG--LAD---FPD   73 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----------CCEEECCHHHh--Hhh---CCC
Confidence            678999999999977766665 578999999999876666544    3          44777666553  222   257


Q ss_pred             CCCcEEEEcccccc-CCchhhHHH
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTS  175 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~  175 (180)
                      ++||+||.+..+-. ..+..++.-
T Consensus        74 ~sFD~VIlsqtLQ~~~~P~~vL~E   97 (193)
T PF07021_consen   74 QSFDYVILSQTLQAVRRPDEVLEE   97 (193)
T ss_pred             CCccEEehHhHHHhHhHHHHHHHH
Confidence            89999999998755 444444443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.92  E-value=5.3e-09  Score=81.67  Aligned_cols=88  Identities=15%  Similarity=0.273  Sum_probs=48.9

Q ss_pred             CCeEEEeCCcCC-hHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           75 ASSILELGSGVG-VTGILCSR-FCREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        75 ~~~vLdlG~G~G-~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||||+|.. +..|..++ .+++++|||+++..++.|++|++.| ++      ..+|.+....=.. .-+... ...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L------~~~I~l~~~~~~~-~i~~~i-~~~  174 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL------ESRIELRKQKNPD-NIFDGI-IQP  174 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-------TTTEEEEE--ST--SSTTTS-TT-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc------ccceEEEEcCCcc-ccchhh-hcc
Confidence            458999999985 55666555 4899999999999999999999999 53      3456665442111 111111 123


Q ss_pred             CCCCcEEEEccccccCCch
Q 030274          152 PGGFDLILGADIYILYNRS  170 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~~  170 (180)
                      ...||+.+||||+|....+
T Consensus       175 ~e~~dftmCNPPFy~s~~e  193 (299)
T PF05971_consen  175 NERFDFTMCNPPFYSSQEE  193 (299)
T ss_dssp             -S-EEEEEE-----SS---
T ss_pred             cceeeEEecCCccccChhh
Confidence            4589999999999996543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.91  E-value=6.3e-09  Score=77.10  Aligned_cols=73  Identities=21%  Similarity=0.336  Sum_probs=56.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ...-|||||||+|+.|-.+...|..++++|+|+.|++.|.+. +..+           .+..-+.+..      ++..++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg-----------dlil~DMG~G------lpfrpG  111 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG-----------DLILCDMGEG------LPFRPG  111 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc-----------CeeeeecCCC------CCCCCC
Confidence            567899999999999999999999999999999999999862 2222           1455566654      234578


Q ss_pred             CCcEEEEcccc
Q 030274          154 GFDLILGADIY  164 (180)
Q Consensus       154 ~fD~Ii~~d~~  164 (180)
                      .||-+|+-.-+
T Consensus       112 tFDg~ISISAv  122 (270)
T KOG1541|consen  112 TFDGVISISAV  122 (270)
T ss_pred             ccceEEEeeee
Confidence            99988876654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.91  E-value=2.5e-08  Score=78.89  Aligned_cols=100  Identities=11%  Similarity=0.163  Sum_probs=69.5

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+.+.....+..+|||+|||+|..++.+++.  ..+++++|. +.+++.+++|+...+.      ..++++...+....
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl------~~rv~~~~~d~~~~  211 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV------ADRMRGIAVDIYKE  211 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc------cceEEEEecCccCC
Confidence            33444444446679999999999999998886  368999998 7899999999988762      23455555554432


Q ss_pred             chhhHHHhhCCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          142 DQINKIIQKYPGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                      .         ...+|+|+.+-++++....   .+++.+.++
T Consensus       212 ~---------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~  243 (306)
T TIGR02716       212 S---------YPEADAVLFCRILYSANEQLSTIMCKKAFDA  243 (306)
T ss_pred             C---------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHh
Confidence            1         1247999999888764333   355555544

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.91  E-value=2.1e-08  Score=73.13  Aligned_cols=101  Identities=19%  Similarity=0.269  Sum_probs=69.7

Q ss_pred             eecchHHHHHHHHhhCCC--CCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           54 LVWPGAMLMNDYLSKNPD--VLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~--~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      .+-|....+-+.+-....  .+.+.++||+.+|+|.+|+.+...| .+|+++|.+..+...+++|++..+..      .+
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~------~~   94 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE------GE   94 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc------cc
Confidence            355666555555554332  3689999999999999999777665 69999999999999999999887521      22


Q ss_pred             EEEEEeecCCCchhhHHHhhCCC--CCcEEEEcccccc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPG--GFDLILGADIYIL  166 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~--~fD~Ii~~d~~y~  166 (180)
                      ..+..-     +.. .+++....  .||+|...||+-.
T Consensus        95 ~~~~~~-----da~-~~L~~~~~~~~FDlVflDPPy~~  126 (187)
T COG0742          95 ARVLRN-----DAL-RALKQLGTREPFDLVFLDPPYAK  126 (187)
T ss_pred             eEEEee-----cHH-HHHHhcCCCCcccEEEeCCCCcc
Confidence            222222     112 22222333  4999999998763

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.90  E-value=2.1e-08  Score=72.82  Aligned_cols=51  Identities=18%  Similarity=0.331  Sum_probs=45.6

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ..+.++.+++|+|||||.+++.++..  ..+|+++|.++++++..++|++..+
T Consensus        30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg   82 (187)
T COG2242          30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG   82 (187)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC
Confidence            34458889999999999999998854  4799999999999999999999987

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.90  E-value=1.2e-08  Score=75.60  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=58.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|..+..+++. +..++++|.++++++.++++    +          +.+...+....  +.   +...
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~----------~~~~~~d~~~~--l~---~~~~   73 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G----------VNVIQGDLDEG--LE---AFPD   73 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C----------CeEEEEEhhhc--cc---ccCC
Confidence            5669999999999998888754 56889999999998887642    2          22344333321  10   1134


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHH
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                      ++||+|+++.++++ .+....++.+.
T Consensus        74 ~sfD~Vi~~~~l~~~~d~~~~l~e~~   99 (194)
T TIGR02081        74 KSFDYVILSQTLQATRNPEEILDEML   99 (194)
T ss_pred             CCcCEEEEhhHhHcCcCHHHHHHHHH
Confidence            68999999999877 45555555444

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK04266 fibrillarin; Provisional

Probab=98.89  E-value=2.6e-08  Score=75.50  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=41.7

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHH
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ....++.+|||+|||+|..++.+++..  .+|+++|.++.|++.+.++++.
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~  118 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE  118 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh
Confidence            445578899999999999999998863  5899999999999988877654

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.89  E-value=1.4e-08  Score=78.76  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=34.6

Q ss_pred             CCCeEEEeCCcCCh----HHHHHhhc-------CCeEEEecCCHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGV----TGILCSRF-------CREVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        74 ~~~~vLdlG~G~G~----~~l~la~~-------~~~V~~~D~~~~~l~~~~~n~  116 (180)
                      ++.+|+|+|||||-    +++.+++.       +.+|+++|+|+.+++.|++++
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            45699999999995    45555543       358999999999999999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK06922 hypothetical protein; Provisional

Probab=98.89  E-value=5.6e-09  Score=88.86  Aligned_cols=80  Identities=21%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+++.|++.++++...++        .++.+...+..+   +...  .
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--------~~ie~I~gDa~d---Lp~~--f  483 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--------RSWNVIKGDAIN---LSSS--F  483 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--------CCeEEEEcchHh---Cccc--c
Confidence            46789999999999988887764  5799999999999999998876543        123333222221   1100  1


Q ss_pred             CCCCCcEEEEccccc
Q 030274          151 YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y  165 (180)
                      .+++||+|+++.++.
T Consensus       484 edeSFDvVVsn~vLH  498 (677)
T PRK06922        484 EKESVDTIVYSSILH  498 (677)
T ss_pred             CCCCEEEEEEchHHH
Confidence            356899999998765

>PLN03075 nicotianamine synthase; Provisional

Probab=98.88  E-value=3.1e-08  Score=77.42  Aligned_cols=93  Identities=9%  Similarity=0.103  Sum_probs=64.9

Q ss_pred             CCCeEEEeCCcC-ChHHHHHhh-c--CCeEEEecCCHHHHHHHHHHHHH-hcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGV-GVTGILCSR-F--CREVLLTDHNEEVLKILKKNIEH-HTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~la~-~--~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +.++|+|+|||. |+.++.+++ .  +.+++++|.++++++.|++++.. .+.      ..++++...+..+..      
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL------~~rV~F~~~Da~~~~------  190 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL------SKRMFFHTADVMDVT------  190 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc------cCCcEEEECchhhcc------
Confidence            678999999996 466776664 2  46899999999999999999965 331      234555555443321      


Q ss_pred             hhCCCCCcEEEEcccccc--CCchhhHHHHHHh
Q 030274          149 QKYPGGFDLILGADIYIL--YNRSLLMTSFFQA  179 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~--~~~~~l~~~~~~a  179 (180)
                       ...++||+|++.-++|+  ......++.+.+.
T Consensus       191 -~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~  222 (296)
T PLN03075        191 -ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKH  222 (296)
T ss_pred             -cccCCcCEEEEecccccccccHHHHHHHHHHh
Confidence             12368999999955676  4666666666554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.87  E-value=1.7e-08  Score=74.86  Aligned_cols=79  Identities=14%  Similarity=0.034  Sum_probs=56.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ...+|||||||+|..+..+++.  ..+|+++|.++.+++.+++++..++.       .++.+...+...   +... ...
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-------~ni~~i~~d~~~---~~~~-~~~   84 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-------KNLHVLCGDANE---LLDK-FFP   84 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-------CCEEEEccCHHH---HHHh-hCC
Confidence            3458999999999999988876  46999999999999999999988752       234443333221   1100 012


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      .+.+|.|+.+.+
T Consensus        85 ~~~~d~v~~~~p   96 (194)
T TIGR00091        85 DGSLSKVFLNFP   96 (194)
T ss_pred             CCceeEEEEECC
Confidence            358999998854

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.85  E-value=2.3e-08  Score=83.06  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=64.2

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      +..++.++.    ..++.+|||+|||+|..++.+++.   ..+|+++|+++.+++.+++|++.++..       ++.+..
T Consensus       239 s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-------~v~~~~  307 (444)
T PRK14902        239 SMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-------NIETKA  307 (444)
T ss_pred             HHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------eEEEEe
Confidence            344454442    235679999999999999988874   369999999999999999999998721       244444


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      .+.....      ....++||+|++.+|++
T Consensus       308 ~D~~~~~------~~~~~~fD~Vl~D~Pcs  331 (444)
T PRK14902        308 LDARKVH------EKFAEKFDKILVDAPCS  331 (444)
T ss_pred             CCccccc------chhcccCCEEEEcCCCC
Confidence            4433221      01136899999998754

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=1.3e-08  Score=73.32  Aligned_cols=78  Identities=19%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             CCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           75 ASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .+.++|||||+|.++-.+++.   ...+.+||+|+.+++..++.+..|+        .++.+.+-+...     .+   .
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--------~~~~~V~tdl~~-----~l---~  107 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--------VHIDVVRTDLLS-----GL---R  107 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--------CccceeehhHHh-----hh---c
Confidence            467999999999999998875   3578999999999999999999986        223344333332     22   2


Q ss_pred             CCCCcEEEEccccccCC
Q 030274          152 PGGFDLILGADIYILYN  168 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~  168 (180)
                      .++.|+++.|||+-...
T Consensus       108 ~~~VDvLvfNPPYVpt~  124 (209)
T KOG3191|consen  108 NESVDVLVFNPPYVPTS  124 (209)
T ss_pred             cCCccEEEECCCcCcCC
Confidence            47999999999987743

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.84  E-value=5.4e-08  Score=73.03  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..+..+++..   .+++++|.++.+++.++++....         .++.+...+.....       .
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~---------~~i~~~~~d~~~~~-------~  102 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELP---------LNIEFIQADAEALP-------F  102 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccC---------CCceEEecchhcCC-------C
Confidence            67899999999999999888764   48999999999999999887511         12334443333221       1


Q ss_pred             CCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274          151 YPGGFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                      ..++||+|+++..+.+ .+...+++.+.
T Consensus       103 ~~~~~D~i~~~~~~~~~~~~~~~l~~~~  130 (223)
T TIGR01934       103 EDNSFDAVTIAFGLRNVTDIQKALREMY  130 (223)
T ss_pred             CCCcEEEEEEeeeeCCcccHHHHHHHHH
Confidence            2457999999877654 34444444443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.83  E-value=2.9e-08  Score=77.06  Aligned_cols=79  Identities=16%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   ...|+++|.++.+++.+++|++.++.       .++.+...+...   +    ..
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-------~~v~~~~~D~~~---~----~~  136 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-------LNVAVTNFDGRV---F----GA  136 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-------CcEEEecCCHHH---h----hh
Confidence            6789999999999999988764   35899999999999999999999872       123333332211   1    11


Q ss_pred             CCCCCcEEEEcccccc
Q 030274          151 YPGGFDLILGADIYIL  166 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~  166 (180)
                      ..++||+|++.+|+..
T Consensus       137 ~~~~fD~Vl~D~Pcsg  152 (264)
T TIGR00446       137 AVPKFDAILLDAPCSG  152 (264)
T ss_pred             hccCCCEEEEcCCCCC
Confidence            2346999999887653

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.83  E-value=1.6e-08  Score=75.13  Aligned_cols=80  Identities=18%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|+|+.||.|.+++.+|+  .++.|+++|.+|.+++.+++|++.|+..      .++.....|....      .  
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~------~~i~~~~~D~~~~------~--  165 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE------NRIEVINGDAREF------L--  165 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T------TTEEEEES-GGG----------
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC------CeEEEEcCCHHHh------c--
Confidence            3678999999999999999998  5689999999999999999999999733      3455555544332      1  


Q ss_pred             CCCCCcEEEEcccccc
Q 030274          151 YPGGFDLILGADIYIL  166 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~  166 (180)
                      ....+|-|+++-|-..
T Consensus       166 ~~~~~drvim~lp~~~  181 (200)
T PF02475_consen  166 PEGKFDRVIMNLPESS  181 (200)
T ss_dssp             -TT-EEEEEE--TSSG
T ss_pred             CccccCEEEECChHHH
Confidence            1568999999887543

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.83  E-value=1.7e-08  Score=83.37  Aligned_cols=80  Identities=14%  Similarity=0.077  Sum_probs=58.9

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|..++.+++.+  .+|+++|.++.+++.+++|++.++.        ++.+...+....   ...  .
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--------~~~~~~~D~~~~---~~~--~  309 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--------KATVIVGDARDP---AQW--W  309 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--------CeEEEEcCcccc---hhh--c
Confidence            367899999999999999888764  5999999999999999999999862        123333332221   110  1


Q ss_pred             CCCCCcEEEEccccc
Q 030274          151 YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y  165 (180)
                      ...+||.|++++|+.
T Consensus       310 ~~~~fD~Vl~D~Pcs  324 (427)
T PRK10901        310 DGQPFDRILLDAPCS  324 (427)
T ss_pred             ccCCCCEEEECCCCC
Confidence            235799999988764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.83  E-value=1.4e-08  Score=76.51  Aligned_cols=53  Identities=17%  Similarity=0.135  Sum_probs=43.6

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~  113 (180)
                      ..|.+++.+.. ..++.+|||+|||.|.-++.+|..|.+|+++|+++.+++.+.
T Consensus        24 ~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         24 PLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF   76 (218)
T ss_pred             HHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence            55666665432 125679999999999999999999999999999999999864

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.82  E-value=1.2e-08  Score=74.66  Aligned_cols=94  Identities=12%  Similarity=0.056  Sum_probs=63.6

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--Ce---------EEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--RE---------VLLTDHNEEVLKILKKNIEHHTSSENPNSD  128 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~---------V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~  128 (180)
                      ..+|..|.......++..+||-.||+|.+.+.++..+  ..         +++.|+++.+++.+++|++..+..      
T Consensus        14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~------   87 (179)
T PF01170_consen   14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE------   87 (179)
T ss_dssp             HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C------
T ss_pred             HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC------
Confidence            4566666665555577899999999999998877653  23         789999999999999999987632      


Q ss_pred             CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..+.+.+.+.....       ...+.+|+||+++|+-.
T Consensus        88 ~~i~~~~~D~~~l~-------~~~~~~d~IvtnPPyG~  118 (179)
T PF01170_consen   88 DYIDFIQWDARELP-------LPDGSVDAIVTNPPYGR  118 (179)
T ss_dssp             GGEEEEE--GGGGG-------GTTSBSCEEEEE--STT
T ss_pred             CceEEEecchhhcc-------cccCCCCEEEECcchhh
Confidence            23445544444321       23568999999999866

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.81  E-value=1.1e-08  Score=73.27  Aligned_cols=78  Identities=21%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             eEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274           77 SILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD  156 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD  156 (180)
                      .|+|+.||.|.-++.+|+.+.+|+++|+++..++.++.|++..|.      ..++.+..-+|.+..  ..+  .....+|
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv------~~~I~~i~gD~~~~~--~~~--~~~~~~D   71 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV------ADNIDFICGDFFELL--KRL--KSNKIFD   71 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-------GGGEEEEES-HHHHG--GGB--------S
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEeCCHHHHH--hhc--ccccccc
Confidence            699999999999999999999999999999999999999999872      346777777776531  111  0111289


Q ss_pred             EEEEcccc
Q 030274          157 LILGADIY  164 (180)
Q Consensus       157 ~Ii~~d~~  164 (180)
                      +|+++||.
T Consensus        72 ~vFlSPPW   79 (163)
T PF09445_consen   72 VVFLSPPW   79 (163)
T ss_dssp             EEEE---B
T ss_pred             EEEECCCC
Confidence            99999974

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.79  E-value=3.8e-08  Score=81.34  Aligned_cols=81  Identities=14%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++.+|||+|||+|..++.++..   +.+|+++|.++.+++.+++|++..+..       ++.+...+...   +..   
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-------~v~~~~~Da~~---l~~---  302 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-------SIEIKIADAER---LTE---  302 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------eEEEEECchhh---hhh---
Confidence            36789999999999999888774   469999999999999999999988621       23444433322   111   


Q ss_pred             hCCCCCcEEEEcccccc
Q 030274          150 KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~  166 (180)
                      ...++||.|++..|+..
T Consensus       303 ~~~~~fD~Vl~DaPCsg  319 (431)
T PRK14903        303 YVQDTFDRILVDAPCTS  319 (431)
T ss_pred             hhhccCCEEEECCCCCC
Confidence            12457999999887743

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=98.79  E-value=1.4e-09  Score=83.43  Aligned_cols=60  Identities=28%  Similarity=0.461  Sum_probs=52.3

Q ss_pred             cCceecchHHHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHH
Q 030274           51 TGQLVWPGAMLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLK  110 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~  110 (180)
                      -|.++|.++..+..++.+.   .-.+.+++|||||||+|+.++.+...+ ..|...|++.+.++
T Consensus        90 Gg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen   90 GGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             cceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            4788999999999999855   234578999999999999999999887 79999999998883

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.79  E-value=8.2e-08  Score=79.79  Aligned_cols=92  Identities=12%  Similarity=0.039  Sum_probs=63.5

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL  131 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~  131 (180)
                      +++.+..+.-.+..   ..++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.++.       .++
T Consensus       234 vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-------~~v  303 (445)
T PRK14904        234 VQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-------TII  303 (445)
T ss_pred             EeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-------CeE
Confidence            55544444444332   236789999999999988887763   36999999999999999999998862       124


Q ss_pred             EEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          132 AVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      .+...+....        ....+||+|++.+|+
T Consensus       304 ~~~~~Da~~~--------~~~~~fD~Vl~D~Pc  328 (445)
T PRK14904        304 ETIEGDARSF--------SPEEQPDAILLDAPC  328 (445)
T ss_pred             EEEeCccccc--------ccCCCCCEEEEcCCC
Confidence            4443333221        023579999987653

>PRK04457 spermidine synthase; Provisional

Probab=98.78  E-value=9.3e-08  Score=74.10  Aligned_cols=76  Identities=17%  Similarity=0.248  Sum_probs=54.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +.++|||||||+|.++..+++.  +.+|+++|+++++++.+++++..++      ...++.+..   ++.  .. ++...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~------~~~rv~v~~---~Da--~~-~l~~~  133 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE------NGERFEVIE---ADG--AE-YIAVH  133 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC------CCCceEEEE---CCH--HH-HHHhC
Confidence            4578999999999999888765  4799999999999999999976542      112344433   222  11 12234


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      .++||+|+..
T Consensus       134 ~~~yD~I~~D  143 (262)
T PRK04457        134 RHSTDVILVD  143 (262)
T ss_pred             CCCCCEEEEe
Confidence            5689999975

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.78  E-value=1.7e-08  Score=75.33  Aligned_cols=82  Identities=13%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+.++||||||++|+.++++|+.   +.+|+.+|.+++..+.|++|++..+..      .++++...+...  .+..+..
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~------~~I~~~~gda~~--~l~~l~~  115 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD------DRIEVIEGDALE--VLPELAN  115 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG------GGEEEEES-HHH--HHHHHHH
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC------CcEEEEEeccHh--hHHHHHh
Confidence            36679999999999999999974   579999999999999999999998732      345554432221  1222222


Q ss_pred             hC-CCCCcEEEEcc
Q 030274          150 KY-PGGFDLILGAD  162 (180)
Q Consensus       150 ~~-~~~fD~Ii~~d  162 (180)
                      .. .++||+|+..-
T Consensus       116 ~~~~~~fD~VFiDa  129 (205)
T PF01596_consen  116 DGEEGQFDFVFIDA  129 (205)
T ss_dssp             TTTTTSEEEEEEES
T ss_pred             ccCCCceeEEEEcc
Confidence            22 35899988754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.76  E-value=2.4e-08  Score=75.63  Aligned_cols=58  Identities=19%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHH
Q 030274           54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKI  111 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~  111 (180)
                      .++.++..|...+.......++++|||+|||||.++..+++.| .+|+++|.++.++..
T Consensus        55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            5678888999888876655688899999999999999999986 589999999976654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.75  E-value=7.8e-08  Score=62.43  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=55.4

Q ss_pred             eEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCC
Q 030274           77 SILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGF  155 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  155 (180)
                      +++|+|||+|..+..+++ ...+++++|.++.+++.++++...+.       ..++.+...++.+...      ....+|
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------~~~~~~   67 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-------ADNVEVLKGDAEELPP------EADESF   67 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-------ccceEEEEcChhhhcc------ccCCce
Confidence            589999999999988887 56799999999999998886443332       1234454444443311      134689


Q ss_pred             cEEEEcccccc
Q 030274          156 DLILGADIYIL  166 (180)
Q Consensus       156 D~Ii~~d~~y~  166 (180)
                      |+|+++.++++
T Consensus        68 d~i~~~~~~~~   78 (107)
T cd02440          68 DVIISDPPLHH   78 (107)
T ss_pred             EEEEEccceee
Confidence            99999998765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.75  E-value=5.1e-08  Score=80.73  Aligned_cols=82  Identities=18%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++.+|||+|||+|..++.+++.   ..+|+++|.++.+++.+++|++.++..       ++.+...+....   .....
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-------~v~~~~~D~~~~---~~~~~  320 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-------SIKILAADSRNL---LELKP  320 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------eEEEEeCChhhc---ccccc
Confidence            36789999999999999988875   258999999999999999999998731       244443332221   10000


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                      ...++||.|++..|+
T Consensus       321 ~~~~~fD~Vl~DaPC  335 (434)
T PRK14901        321 QWRGYFDRILLDAPC  335 (434)
T ss_pred             cccccCCEEEEeCCC
Confidence            124589999987764

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.73  E-value=7.9e-09  Score=77.52  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             eEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274           77 SILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD  156 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD  156 (180)
                      .++|+|||+|..++.+|..-.+|++||.++.|++.+++.-...-           ........+.+ ...+ ...+.+.|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y-----------~~t~~~ms~~~-~v~L-~g~e~SVD  102 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY-----------CHTPSTMSSDE-MVDL-LGGEESVD  102 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccc-----------ccCCccccccc-cccc-cCCCccee
Confidence            89999999998888899888899999999999998876422221           01122222222 1111 11267999


Q ss_pred             EEEEccccccCCchhhHHHHHH
Q 030274          157 LILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       157 ~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      +|+++.++++.+.+...+....
T Consensus       103 lI~~Aqa~HWFdle~fy~~~~r  124 (261)
T KOG3010|consen  103 LITAAQAVHWFDLERFYKEAYR  124 (261)
T ss_pred             eehhhhhHHhhchHHHHHHHHH
Confidence            9999999999776666555443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.71  E-value=9.5e-08  Score=74.42  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=40.8

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-----CCeEEEecCCHHHHHHHHHH
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-----CREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-----~~~V~~~D~~~~~l~~~~~n  115 (180)
                      ..+++.+.+... ....+|||+|||+|..+..+++.     +.+|+++|+|+.+++.|+++
T Consensus        72 ~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~  131 (272)
T PRK11088         72 DAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR  131 (272)
T ss_pred             HHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence            444445544322 24568999999999998887764     24799999999999999765

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.71  E-value=7.6e-08  Score=79.56  Aligned_cols=60  Identities=18%  Similarity=0.199  Sum_probs=49.6

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .++..++.++.    ..++.+|||+|||+|..++.+++.  ..+|+++|.++.+++.+++|++.++
T Consensus       225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g  286 (426)
T TIGR00563       225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG  286 (426)
T ss_pred             HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence            45566666653    236789999999999999988875  3699999999999999999999986

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.70  E-value=4.5e-07  Score=79.26  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=69.9

Q ss_pred             hHHHHHHHHhhCCCC-CCCCeEEEeCCcCChHHHHHhhc-----------------------------------------
Q 030274           58 GAMLMNDYLSKNPDV-LQASSILELGSGVGVTGILCSRF-----------------------------------------   95 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~-~~~~~vLdlG~G~G~~~l~la~~-----------------------------------------   95 (180)
                      --+.||..+...... .++..++|-+||+|.+.+.+|..                                         
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            337787777765554 35679999999999999877642                                         


Q ss_pred             ---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274           96 ---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus        96 ---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                         ..+++++|+++.+++.|+.|+..++..      ..+.+...++.+...     +...++||+|++|||+..
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~------~~i~~~~~D~~~~~~-----~~~~~~~d~IvtNPPYg~  315 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVA------ELITFEVKDVADLKN-----PLPKGPTGLVISNPPYGE  315 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCC------cceEEEeCChhhccc-----ccccCCCCEEEECCCCcC
Confidence               126999999999999999999999732      234444444443211     111247999999999866

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.70  E-value=2.8e-07  Score=76.39  Aligned_cols=89  Identities=15%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGILCSRFC------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      +++.|+|+|||+|.++..+++.+      .+|++++.++.+...+++.++.|+      ...++++.+-+..+.+.    
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~------w~~~V~vi~~d~r~v~l----  255 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG------WGDKVTVIHGDMREVEL----  255 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT------TTTTEEEEES-TTTSCH----
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC------CCCeEEEEeCcccCCCC----
Confidence            46789999999999987766553      599999999999988888778876      34568888877776542    


Q ss_pred             HhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          148 IQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                          +.++|+||+--+-+.-..+...+++
T Consensus       256 ----pekvDIIVSElLGsfg~nEl~pE~L  280 (448)
T PF05185_consen  256 ----PEKVDIIVSELLGSFGDNELSPECL  280 (448)
T ss_dssp             ----SS-EEEEEE---BTTBTTTSHHHHH
T ss_pred             ----CCceeEEEEeccCCccccccCHHHH
Confidence                4589999999886554434444443

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.70  E-value=2.2e-07  Score=75.31  Aligned_cols=75  Identities=21%  Similarity=0.273  Sum_probs=55.2

Q ss_pred             CCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           75 ASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +.+|||+.||+|..|+.+++.  | .+|+++|.++.+++.+++|++.|+..       ++.+.+     .+. ..++...
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-------~~~v~~-----~Da-~~~l~~~  111 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-------NIEVPN-----EDA-ANVLRYR  111 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------cEEEEc-----hhH-HHHHHHh
Confidence            358999999999999999886  4 68999999999999999999999621       222222     221 1122223


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      ..+||+|...|
T Consensus       112 ~~~fDvIdlDP  122 (374)
T TIGR00308       112 NRKFHVIDIDP  122 (374)
T ss_pred             CCCCCEEEeCC
Confidence            45799999855

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.69  E-value=1.4e-07  Score=76.47  Aligned_cols=81  Identities=12%  Similarity=0.064  Sum_probs=59.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .+..+||||||+|...+.+|+.  ...++|+|+++.+++.+.+++..+++       .++.+...+...   +..  ...
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-------~NV~~i~~DA~~---ll~--~~~  189 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-------KNLLIINYDARL---LLE--LLP  189 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------CcEEEEECCHHH---hhh--hCC
Confidence            3458999999999999999986  47999999999999999999988762       234444433321   111  124


Q ss_pred             CCCCcEEEEcccccc
Q 030274          152 PGGFDLILGADIYIL  166 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~  166 (180)
                      .+++|.|+++-|..|
T Consensus       190 ~~s~D~I~lnFPdPW  204 (390)
T PRK14121        190 SNSVEKIFVHFPVPW  204 (390)
T ss_pred             CCceeEEEEeCCCCc
Confidence            578999998876544

>TIGR03438 probable methyltransferase

Probab=98.69  E-value=1.9e-07  Score=73.86  Aligned_cols=46  Identities=20%  Similarity=0.179  Sum_probs=40.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+|++|++.+++++...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~  111 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD  111 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh
Confidence            5578999999999999888765   579999999999999999998764

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.68  E-value=1.9e-07  Score=70.02  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=63.4

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      |..-.+..+|.+.   .+.++|||||++.|+.++++|..   ..+++.+|.+++..+.|++|++..+..      .++..
T Consensus        45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~------~~i~~  115 (219)
T COG4122          45 PETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD------DRIEL  115 (219)
T ss_pred             hhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc------ceEEE
Confidence            3333344444443   36789999999999999999874   368999999999999999999998832      22333


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGA  161 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~  161 (180)
                      ..-    .+.++.+.....++||+|+..
T Consensus       116 ~~~----gdal~~l~~~~~~~fDliFID  139 (219)
T COG4122         116 LLG----GDALDVLSRLLDGSFDLVFID  139 (219)
T ss_pred             Eec----CcHHHHHHhccCCCccEEEEe
Confidence            221    222333322346799998764

>PLN02476 O-methyltransferase

Probab=98.68  E-value=1.4e-07  Score=73.41  Aligned_cols=48  Identities=15%  Similarity=0.220  Sum_probs=43.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      +.++|||+|+|+|+.++.+|+.   +.+|+.+|.+++.++.|++|++..+.
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl  168 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV  168 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            6689999999999999999874   46899999999999999999999974

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.67  E-value=3e-07  Score=68.98  Aligned_cols=76  Identities=8%  Similarity=0.104  Sum_probs=51.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++.+|||||||+|.++..+++..   .+|+++|+++ +          +.       ..++.+.+.++.+...+..+..
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~-------~~~v~~i~~D~~~~~~~~~i~~  111 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP-------IVGVDFLQGDFRDELVLKALLE  111 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC-------CCCcEEEecCCCChHHHHHHHH
Confidence            467799999999999999888753   5899999987 1          11       1235567777766432332222


Q ss_pred             -hCCCCCcEEEEcccccc
Q 030274          150 -KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 -~~~~~fD~Ii~~d~~y~  166 (180)
                       ...++||+|+++...+.
T Consensus       112 ~~~~~~~D~V~S~~~~~~  129 (209)
T PRK11188        112 RVGDSKVQVVMSDMAPNM  129 (209)
T ss_pred             HhCCCCCCEEecCCCCcc
Confidence             23568999999875443

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=2.4e-07  Score=71.05  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=66.7

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+.+....+..++.+|||||+|.|.++..+++.+.+|+++++++.+++.+++.....         .++.+..-|.-..
T Consensus        18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---------~n~~vi~~DaLk~   88 (259)
T COG0030          18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---------DNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---------cceEEEeCchhcC
Confidence            3555655555556789999999999999999999999999999999999999886522         2344554444433


Q ss_pred             chhhHHHhhCCC--CCcEEEEccccccC
Q 030274          142 DQINKIIQKYPG--GFDLILGADIYILY  167 (180)
Q Consensus       142 ~~~~~~~~~~~~--~fD~Ii~~d~~y~~  167 (180)
                      +        .+.  .++.|++|=|||-.
T Consensus        89 d--------~~~l~~~~~vVaNlPY~Is  108 (259)
T COG0030          89 D--------FPSLAQPYKVVANLPYNIS  108 (259)
T ss_pred             c--------chhhcCCCEEEEcCCCccc
Confidence            2        122  68999999988763

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.60  E-value=5.5e-07  Score=66.30  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=54.1

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      .+.+...+.....++.+|||+|||+|.++..+++..   .+|+++|+++.+        ...          ++.+...+
T Consensus        19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~----------~i~~~~~d   80 (188)
T TIGR00438        19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIE----------NVDFIRGD   80 (188)
T ss_pred             HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCC----------CceEEEee
Confidence            444444445555678899999999999988877652   479999999853        111          24455666


Q ss_pred             cCCCchhhHHHh-hCCCCCcEEEEcc
Q 030274          138 WGNSDQINKIIQ-KYPGGFDLILGAD  162 (180)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~fD~Ii~~d  162 (180)
                      ..+.+....+.. ....+||+|+++.
T Consensus        81 ~~~~~~~~~l~~~~~~~~~D~V~~~~  106 (188)
T TIGR00438        81 FTDEEVLNKIRERVGDDKVDVVMSDA  106 (188)
T ss_pred             CCChhHHHHHHHHhCCCCccEEEcCC
Confidence            655432222221 1345799999864

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.55  E-value=3.1e-07  Score=67.64  Aligned_cols=89  Identities=17%  Similarity=0.286  Sum_probs=64.2

Q ss_pred             CeEEEeCCcCChHHHHHh-hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           76 SSILELGSGVGVTGILCS-RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      ..|||+|||||..--..- +.+.+|+++|.++.|-+.+.+.+..+.+         ..+..+.....+.+.++   ..++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~---------~~~~~fvva~ge~l~~l---~d~s  145 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP---------LQVERFVVADGENLPQL---ADGS  145 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC---------cceEEEEeechhcCccc---ccCC
Confidence            368999999997544433 3478999999999999999999988852         33455555555554433   5789


Q ss_pred             CcEEEEcccccc-CCchhhHHHH
Q 030274          155 FDLILGADIYIL-YNRSLLMTSF  176 (180)
Q Consensus       155 fD~Ii~~d~~y~-~~~~~l~~~~  176 (180)
                      +|.|++.=++.. .+....+.-+
T Consensus       146 ~DtVV~TlvLCSve~~~k~L~e~  168 (252)
T KOG4300|consen  146 YDTVVCTLVLCSVEDPVKQLNEV  168 (252)
T ss_pred             eeeEEEEEEEeccCCHHHHHHHH
Confidence            999999998766 4544555444

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.52  E-value=6.4e-06  Score=66.30  Aligned_cols=94  Identities=9%  Similarity=0.013  Sum_probs=71.9

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-----------------------------------------e
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-----------------------------------------E   98 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-----------------------------------------~   98 (180)
                      +.||..|.......++..++|-=||+|.+.+.+|..+.                                         .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            77888887777766778999999999999998887653                                         3


Q ss_pred             EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274           99 VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus        99 V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ++++|+++.+++.|+.|+...+..      ..+.+...+.....       .....+|+||+|||+=.
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~------d~I~f~~~d~~~l~-------~~~~~~gvvI~NPPYGe  311 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVG------DLIEFKQADATDLK-------EPLEEYGVVISNPPYGE  311 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCC------ceEEEEEcchhhCC-------CCCCcCCEEEeCCCcch
Confidence            779999999999999999999832      33444444433321       11268999999999755

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.51  E-value=4.5e-07  Score=71.89  Aligned_cols=94  Identities=16%  Similarity=0.086  Sum_probs=71.8

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ..||..+.+.....+|..|||=-||||.+.+.+...|++|+++|++..|+.-++.|++.-+...         +.-+...
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~---------~~~~~~~  253 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED---------YPVLKVL  253 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc---------eeEEEec
Confidence            6788888887777789999999999999999999999999999999999999999999886221         2222222


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +...+    +....++|.|++.||+=.
T Consensus       254 Da~~l----pl~~~~vdaIatDPPYGr  276 (347)
T COG1041         254 DATNL----PLRDNSVDAIATDPPYGR  276 (347)
T ss_pred             ccccC----CCCCCccceEEecCCCCc
Confidence            22221    112336999999998744

>PTZ00146 fibrillarin; Provisional

Probab=98.51  E-value=1.7e-06  Score=67.58  Aligned_cols=63  Identities=17%  Similarity=0.147  Sum_probs=46.2

Q ss_pred             ceecchH-HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHH
Q 030274           53 QLVWPGA-MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        53 ~~~w~~~-~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n  115 (180)
                      .++|+.- -.|+..+..-   ..+.++.+|||||||+|..+..++...   ..|+++|+++.+++.+...
T Consensus       107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~  176 (293)
T PTZ00146        107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNM  176 (293)
T ss_pred             eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHH
Confidence            6788765 3566555332   234577899999999999999999863   5899999998766544443

>PRK00811 spermidine synthase; Provisional

Probab=98.49  E-value=5.3e-07  Score=70.67  Aligned_cols=80  Identities=18%  Similarity=0.316  Sum_probs=54.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +.++||+||||.|..+..+.+. + .+|+++|+++.+++.+++++...+....  ...++.+.   .++..  . ++...
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~--~d~rv~v~---~~Da~--~-~l~~~  147 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAY--DDPRVELV---IGDGI--K-FVAET  147 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccc--cCCceEEE---ECchH--H-HHhhC
Confidence            4579999999999999887775 3 6999999999999999999865321100  01233333   23321  1 12234


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      .++||+|++.
T Consensus       148 ~~~yDvIi~D  157 (283)
T PRK00811        148 ENSFDVIIVD  157 (283)
T ss_pred             CCcccEEEEC
Confidence            5689999985

>PRK03612 spermidine synthase; Provisional

Probab=98.46  E-value=4.4e-07  Score=76.80  Aligned_cols=84  Identities=17%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +.++||++|||+|..+..+++..  .+|+++|+++++++.+++|...+..+.......++++..   ++.  . ..+...
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~---~Da--~-~~l~~~  370 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN---DDA--F-NWLRKL  370 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE---ChH--H-HHHHhC
Confidence            46799999999999998877763  699999999999999999643221110000112343332   222  1 122334


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      .++||+|+++.+
T Consensus       371 ~~~fDvIi~D~~  382 (521)
T PRK03612        371 AEKFDVIIVDLP  382 (521)
T ss_pred             CCCCCEEEEeCC
Confidence            568999999754

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.46  E-value=6.2e-07  Score=71.42  Aligned_cols=79  Identities=22%  Similarity=0.248  Sum_probs=59.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCe-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCRE-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .|.+|||+.||.|.+++.+|+.|.. |+++|+||.+++.+++|+++|+...      .+...   .++...+..    ..
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~------~v~~i---~gD~rev~~----~~  254 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEG------RVEPI---LGDAREVAP----EL  254 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccc------eeeEE---eccHHHhhh----cc
Confidence            5889999999999999999999864 9999999999999999999998321      12222   232222211    12


Q ss_pred             CCCcEEEEccccc
Q 030274          153 GGFDLILGADIYI  165 (180)
Q Consensus       153 ~~fD~Ii~~d~~y  165 (180)
                      +.+|-|+++-|-.
T Consensus       255 ~~aDrIim~~p~~  267 (341)
T COG2520         255 GVADRIIMGLPKS  267 (341)
T ss_pred             ccCCEEEeCCCCc
Confidence            6799999988754

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.46  E-value=6.5e-07  Score=68.64  Aligned_cols=48  Identities=19%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      +.++|||||+++|+.++++|+.   +.+|+.+|.+++..+.|++|++..+.
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~  129 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV  129 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            5679999999999999999874   46999999999999999999999873

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.41  E-value=1.1e-06  Score=74.65  Aligned_cols=84  Identities=17%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC----------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           74 QASSILELGSGVGVTGILCSRFC----------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~----------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      ...+|||.|||+|.+.+.++...          ..+++.|+++.++..++.|+...+.       ..+.+...++.... 
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-------~~~~i~~~d~l~~~-  102 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-------LEINVINFNSLSYV-  102 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-------CCceeeeccccccc-
Confidence            34689999999998888776531          4789999999999999999877640       11222222211110 


Q ss_pred             hhHHHhhCCCCCcEEEEcccccc
Q 030274          144 INKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .. ......++||+||+|||+-.
T Consensus       103 ~~-~~~~~~~~fD~IIgNPPy~~  124 (524)
T TIGR02987       103 LL-NIESYLDLFDIVITNPPYGR  124 (524)
T ss_pred             cc-ccccccCcccEEEeCCCccc
Confidence            00 00112358999999999764

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.38  E-value=3.4e-06  Score=64.61  Aligned_cols=99  Identities=17%  Similarity=0.278  Sum_probs=71.9

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      .+|+++-..+.++.. +.......+...|||+|-|||.++..+...|++|++++.++.|+..+++..+.--      ...
T Consensus        35 d~GQHilkNp~v~~~-I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp------~~~  107 (315)
T KOG0820|consen   35 DFGQHILKNPLVIDQ-IVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP------KSG  107 (315)
T ss_pred             ccchhhhcCHHHHHH-HHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC------ccc
Confidence            357766666554444 4444445577899999999999999999999999999999999999888765432      234


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ++++...++-..+         ...||.+|+|=|+
T Consensus       108 kLqV~~gD~lK~d---------~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  108 KLQVLHGDFLKTD---------LPRFDGCVSNLPY  133 (315)
T ss_pred             eeeEEecccccCC---------CcccceeeccCCc
Confidence            5666665555432         3478999987654

>TIGR00417 speE spermidine synthase

Probab=98.38  E-value=2.3e-06  Score=66.64  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=53.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||+||||+|..+..+.+.  ..+|+++|+++.+++.+++++...+..   ....++++..   .+.  .. .+...
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~---~~~~~v~i~~---~D~--~~-~l~~~  142 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS---YDDPRVDLQI---DDG--FK-FLADT  142 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc---ccCCceEEEE---Cch--HH-HHHhC
Confidence            3459999999999888777665  368999999999999999987654210   0112233332   222  22 12233


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      .++||+|++..+
T Consensus       143 ~~~yDvIi~D~~  154 (270)
T TIGR00417       143 ENTFDVIIVDST  154 (270)
T ss_pred             CCCccEEEEeCC
Confidence            568999998654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.37  E-value=2.7e-06  Score=65.97  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=73.1

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      +|++ +=....+++.+.+.....++..|||+|+|+|.++..+++.+.+|+++|.++...+.+++.+..+         .+
T Consensus         8 ~gQn-FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~---------~~   77 (262)
T PF00398_consen    8 LGQN-FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN---------PN   77 (262)
T ss_dssp             CTSS-EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC---------SS
T ss_pred             CCcC-eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc---------cc
Confidence            3443 3335556666655555557889999999999999999999999999999999999999876633         35


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +.+..-|+...+....    .......|++|-|++.
T Consensus        78 ~~vi~~D~l~~~~~~~----~~~~~~~vv~NlPy~i  109 (262)
T PF00398_consen   78 VEVINGDFLKWDLYDL----LKNQPLLVVGNLPYNI  109 (262)
T ss_dssp             EEEEES-TTTSCGGGH----CSSSEEEEEEEETGTG
T ss_pred             ceeeecchhccccHHh----hcCCceEEEEEecccc
Confidence            7777777766543211    1346678999887643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=6.7e-06  Score=62.54  Aligned_cols=52  Identities=21%  Similarity=0.282  Sum_probs=46.0

Q ss_pred             CCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           69 NPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .....++.+|||.|.|+|.++..+|+. |  .+|+..|+.++.++.|++|++..+
T Consensus        89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~  143 (256)
T COG2519          89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG  143 (256)
T ss_pred             HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc
Confidence            345668999999999999999999973 3  699999999999999999999975

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.37  E-value=2.4e-07  Score=73.43  Aligned_cols=104  Identities=17%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh---------cCCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR---------FCREVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~---------~~~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      .|...-|  ..+++++.+.....++.+|+|-+||+|.+.+.+.+         ...+++|.|+++.++..++.|+..++.
T Consensus        25 ~G~~~TP--~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~  102 (311)
T PF02384_consen   25 LGQFYTP--REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI  102 (311)
T ss_dssp             CGGC-----HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred             cceeehH--HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence            3554444  33444444433444667899999999988776665         346899999999999999999877652


Q ss_pred             CCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          122 SENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..     .+..+...+.-..+.     .....+||+|+++||+-.
T Consensus       103 ~~-----~~~~i~~~d~l~~~~-----~~~~~~~D~ii~NPPf~~  137 (311)
T PF02384_consen  103 DN-----SNINIIQGDSLENDK-----FIKNQKFDVIIGNPPFGS  137 (311)
T ss_dssp             HC-----BGCEEEES-TTTSHS-----CTST--EEEEEEE--CTC
T ss_pred             cc-----ccccccccccccccc-----cccccccccccCCCCccc
Confidence            10     111222222222211     011468999999999643

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.37  E-value=3.3e-06  Score=64.68  Aligned_cols=87  Identities=21%  Similarity=0.249  Sum_probs=58.8

Q ss_pred             hhCCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           67 SKNPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        67 ~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .......+|.+|||-|.|+|.+++.+++. +  .+|+..|..++..+.|++|++.++.      ..++.+..-|....- 
T Consensus        33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl------~~~v~~~~~Dv~~~g-  105 (247)
T PF08704_consen   33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL------DDNVTVHHRDVCEEG-  105 (247)
T ss_dssp             HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC------CTTEEEEES-GGCG--
T ss_pred             HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC------CCCceeEecceeccc-
Confidence            33345568999999999999999999974 2  6999999999999999999999874      235666666654321 


Q ss_pred             hhHHHhhCCCCCcEEEEccc
Q 030274          144 INKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      +.   ......+|.|+..=|
T Consensus       106 ~~---~~~~~~~DavfLDlp  122 (247)
T PF08704_consen  106 FD---EELESDFDAVFLDLP  122 (247)
T ss_dssp             -S---TT-TTSEEEEEEESS
T ss_pred             cc---ccccCcccEEEEeCC
Confidence            10   012357888877654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.35  E-value=2.3e-06  Score=65.34  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=62.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE-EEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV-AKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  152 (180)
                      +..++||||+|.|-++..++..-.+|++||.|+.|...+++    .|          ..+ ...+|.+.          +
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg----------~~vl~~~~w~~~----------~  149 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KG----------FTVLDIDDWQQT----------D  149 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CC----------CeEEehhhhhcc----------C
Confidence            45689999999999999999988999999999988665554    33          122 23445542          4


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHHHhC
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFFQAI  180 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~al  180 (180)
                      .+||+|.|-.++=. ..+..+++.+..+|
T Consensus       150 ~~fDvIscLNvLDRc~~P~~LL~~i~~~l  178 (265)
T PF05219_consen  150 FKFDVISCLNVLDRCDRPLTLLRDIRRAL  178 (265)
T ss_pred             CceEEEeehhhhhccCCHHHHHHHHHHHh
Confidence            58999999999855 66677887777654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01581 speE spermidine synthase; Validated

Probab=98.33  E-value=1.5e-06  Score=69.71  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||+||||+|.....+.+..  .+|+++|+++++++.|++...............++++.   .++.  .. ++...
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv---i~Da--~~-fL~~~  223 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH---VCDA--KE-FLSSP  223 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE---ECcH--HH-HHHhc
Confidence            45699999999998777777653  69999999999999999632111000000011233332   2322  22 12334


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      .++||+|++.-
T Consensus       224 ~~~YDVIIvDl  234 (374)
T PRK01581        224 SSLYDVIIIDF  234 (374)
T ss_pred             CCCccEEEEcC
Confidence            56899999873

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.33  E-value=6.4e-06  Score=62.34  Aligned_cols=56  Identities=13%  Similarity=-0.009  Sum_probs=46.0

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHH
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ....|.+|+.+... .++.+||..|||.|.-.+.||..|.+|+++|+|+.+++.+.+
T Consensus        28 pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~   83 (226)
T PRK13256         28 PNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS   83 (226)
T ss_pred             CCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH
Confidence            34566666655432 256799999999999999999999999999999999998855

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.29  E-value=3.8e-06  Score=58.83  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=40.3

Q ss_pred             eEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           77 SILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ++||+|||.|..++.+++.+  .+|+++|.++.+.+.+++|++.|+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~   46 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN   46 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC
Confidence            48999999999999998875  379999999999999999999986

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.25  E-value=7.1e-06  Score=62.68  Aligned_cols=91  Identities=16%  Similarity=0.177  Sum_probs=63.2

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+.......+..+|+|||+|+|..+..+++.  +.+++..|. |.+++.+++   .          .++.+...++.+. 
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----------~rv~~~~gd~f~~-  155 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----------DRVEFVPGDFFDP-  155 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----------TTEEEEES-TTTC-
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----------cccccccccHHhh-
Confidence            3333344445578999999999999988875  579999999 889998888   2          2577888887732 


Q ss_pred             hhhHHHhhCCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          143 QINKIIQKYPGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                              .+. +|+++.+.++++....   .+++.+.+|
T Consensus       156 --------~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~a  186 (241)
T PF00891_consen  156 --------LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAA  186 (241)
T ss_dssp             --------CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHH
T ss_pred             --------hcc-ccceeeehhhhhcchHHHHHHHHHHHHH
Confidence                    244 9999999999874433   445555444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.24  E-value=6.8e-06  Score=58.70  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=75.5

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      .|. +-|++-.+++-+.......++.-|||+|.|||.++-.+.+.|   ..+++++++++....+.+....-+       
T Consensus        26 VGa-I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-------   97 (194)
T COG3963          26 VGA-ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-------   97 (194)
T ss_pred             eee-ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------
Confidence            343 677888888888877666688899999999999999877765   589999999999888877643321       


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc---CCchhhHHHHH
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL---YNRSLLMTSFF  177 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~---~~~~~l~~~~~  177 (180)
                           +.+.+-.+.+.  .+.......||.|+++=|+-.   .....+++.+.
T Consensus        98 -----ii~gda~~l~~--~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~  143 (194)
T COG3963          98 -----IINGDAFDLRT--TLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLL  143 (194)
T ss_pred             -----ccccchhhHHH--HHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHH
Confidence                 33322222211  111234568999999987644   23334444443

>PLN02366 spermidine synthase

Probab=98.24  E-value=4.5e-06  Score=66.13  Aligned_cols=80  Identities=16%  Similarity=0.248  Sum_probs=53.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||+||||.|.....+++.  ..+|+.+|+++.+++.+++.+...+..   ....++++..   ++.  ...+....
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~---~~dpRv~vi~---~Da--~~~l~~~~  162 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG---FDDPRVNLHI---GDG--VEFLKNAP  162 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc---cCCCceEEEE---ChH--HHHHhhcc
Confidence            4679999999999988888876  368999999999999999988653211   0122344332   322  11111112


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      .++||+|++.
T Consensus       163 ~~~yDvIi~D  172 (308)
T PLN02366        163 EGTYDAIIVD  172 (308)
T ss_pred             CCCCCEEEEc
Confidence            4689999984

>PRK10742 putative methyltransferase; Provisional

Probab=98.22  E-value=1.2e-05  Score=61.24  Aligned_cols=87  Identities=9%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             eEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274           77 SILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD  156 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD  156 (180)
                      +|||+-+|+|..|+.++..|++|+++|.++.+...++.|++......  .....+ ..++.....+....+ ......||
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~--~~~~~~-~~ri~l~~~da~~~L-~~~~~~fD  166 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA--EIGGWL-QERLQLIHASSLTAL-TDITPRPQ  166 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhcc--ccchhh-hceEEEEeCcHHHHH-hhCCCCCc
Confidence            89999999999999999999999999999999999999998842110  000000 011222223333332 22345899


Q ss_pred             EEEEccccccC
Q 030274          157 LILGADIYILY  167 (180)
Q Consensus       157 ~Ii~~d~~y~~  167 (180)
                      +|...|++-+.
T Consensus       167 VVYlDPMfp~~  177 (250)
T PRK10742        167 VVYLDPMFPHK  177 (250)
T ss_pred             EEEECCCCCCC
Confidence            99988876553

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.22  E-value=1.7e-06  Score=62.97  Aligned_cols=46  Identities=13%  Similarity=0.390  Sum_probs=42.7

Q ss_pred             CCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           75 ASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ...+.|||+|+|.++..+|+...+|++++.+|.....|++|+..++
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g   78 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG   78 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC
Confidence            3589999999999999999998899999999999999999997776

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.16  E-value=1.6e-05  Score=62.46  Aligned_cols=79  Identities=11%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++..+||.+||.|.-+..+++..   .+|+++|.++++++.+++++.. .        .++.+..-++.+   +...+
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~--------~ri~~i~~~f~~---l~~~l   84 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F--------GRFTLVHGNFSN---LKEVL   84 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C--------CcEEEEeCCHHH---HHHHH
Confidence            3467799999999999999888763   6999999999999999988644 1        134454444443   22222


Q ss_pred             hhCCCCCcEEEEcc
Q 030274          149 QKYPGGFDLILGAD  162 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d  162 (180)
                      +....++|.|++.-
T Consensus        85 ~~~~~~vDgIl~DL   98 (296)
T PRK00050         85 AEGLGKVDGILLDL   98 (296)
T ss_pred             HcCCCccCEEEECC
Confidence            22112688887653

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.15  E-value=2.3e-05  Score=59.73  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc--------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF--------CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~--------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +...+.++||++||||-++..+.+.        ..+|+..|+|+.|++.+++......+..         .....|...+
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~---------~~~~~w~~~d  167 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA---------SSRVEWVEGD  167 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc---------CCceEEEeCC
Confidence            3446789999999999988877664        1689999999999999999987754321         1134555433


Q ss_pred             hhhHHHhhCCCCCcEEEEcccc
Q 030274          143 QINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      .. . ++....+||....+--+
T Consensus       168 AE-~-LpFdd~s~D~yTiafGI  187 (296)
T KOG1540|consen  168 AE-D-LPFDDDSFDAYTIAFGI  187 (296)
T ss_pred             cc-c-CCCCCCcceeEEEecce
Confidence            11 1 23356688887766554

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.09  E-value=3e-05  Score=56.96  Aligned_cols=72  Identities=21%  Similarity=0.333  Sum_probs=52.5

Q ss_pred             eEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           77 SILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      +++|+|+|.|++|+.+|-.  ..+|+.+|....-+..++.-+...++       .++.+.+.+..+        .....+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-------~nv~v~~~R~E~--------~~~~~~  115 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-------SNVEVINGRAEE--------PEYRES  115 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--------SSEEEEES-HHH--------TTTTT-
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-------CCEEEEEeeecc--------cccCCC
Confidence            7999999999999998865  47899999999888877777776652       235555444333        124678


Q ss_pred             CcEEEEccc
Q 030274          155 FDLILGADI  163 (180)
Q Consensus       155 fD~Ii~~d~  163 (180)
                      ||+|++--+
T Consensus       116 fd~v~aRAv  124 (184)
T PF02527_consen  116 FDVVTARAV  124 (184)
T ss_dssp             EEEEEEESS
T ss_pred             ccEEEeehh
Confidence            999998764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.07  E-value=8e-06  Score=61.63  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=65.3

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHH-HHHHhcCCCCC----C
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK-NIEHHTSSENP----N  126 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~-n~~~n~~~~~~----~  126 (180)
                      ++..=..+..|.+++.+. ...++.+||..|||.|.-.+.+|..|.+|+++|+|+.+++.+.+ |..........    .
T Consensus        16 ~w~~~~~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~   94 (218)
T PF05724_consen   16 PWDQGEPNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRY   94 (218)
T ss_dssp             TT--TTSTHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEE
T ss_pred             CCCCCCCCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeee
Confidence            333333457788887762 22356799999999999999999999999999999999998843 22111100000    1


Q ss_pred             CCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          127 SDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ...++.+..-|+-....      ...++||+|.=.-++
T Consensus        95 ~~~~i~~~~gDfF~l~~------~~~g~fD~iyDr~~l  126 (218)
T PF05724_consen   95 QAGRITIYCGDFFELPP------EDVGKFDLIYDRTFL  126 (218)
T ss_dssp             TTSSEEEEES-TTTGGG------SCHHSEEEEEECSST
T ss_pred             cCCceEEEEcccccCCh------hhcCCceEEEEeccc
Confidence            12345555555554321      123579999876654

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.03  E-value=1.7e-05  Score=55.79  Aligned_cols=48  Identities=23%  Similarity=0.261  Sum_probs=41.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHhh------cCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           73 LQASSILELGSGVGVTGILCSR------FCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~------~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .+..+|+|+|||-|+++..++.      .+.+|+++|.++..++.+++..+..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            3567999999999999999988      36799999999999998888877655

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.03  E-value=1.7e-05  Score=59.58  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             HHHHHHHhhCC-CC-CCCCeEEEeCCcCChHHHHH--hhcCCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEE
Q 030274           60 MLMNDYLSKNP-DV-LQASSILELGSGVGVTGILC--SRFCREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVA  134 (180)
Q Consensus        60 ~~l~~~l~~~~-~~-~~~~~vLdlG~G~G~~~l~l--a~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~  134 (180)
                      ..|++.|.+-. .. .++.++||+|.|.-.+==.+  ...|.+.+++|+++..++.|+.++..| +.+      ..++.+
T Consensus        62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~------~~I~lr  135 (292)
T COG3129          62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE------RAIRLR  135 (292)
T ss_pred             HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh------hheeEE
Confidence            44566555432 22 25568999988875332222  235899999999999999999999998 321      122222


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      .-  .+.+.+-.......+.||+.+||||+|.+.
T Consensus       136 ~q--k~~~~if~giig~nE~yd~tlCNPPFh~s~  167 (292)
T COG3129         136 RQ--KDSDAIFNGIIGKNERYDATLCNPPFHDSA  167 (292)
T ss_pred             ec--cCccccccccccccceeeeEecCCCcchhH
Confidence            11  111111000111246899999999998854

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.02  E-value=5.6e-05  Score=63.17  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=64.1

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL  131 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~  131 (180)
                      --++|...+..|...+  .++.+|||++||.|.=+..+|..   ...|++.|+++.-++.+++|+++.+..       ++
T Consensus        96 Qd~sS~l~~~~L~~~~--~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-------nv  166 (470)
T PRK11933         96 QEASSMLPVAALFADD--NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-------NV  166 (470)
T ss_pred             ECHHHHHHHHHhccCC--CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------eE
Confidence            3455566666654333  36789999999999877777764   258999999999999999999998732       23


Q ss_pred             EEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          132 AVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      .+...+   ...+.   ...+..||.|+...|+
T Consensus       167 ~v~~~D---~~~~~---~~~~~~fD~ILvDaPC  193 (470)
T PRK11933        167 ALTHFD---GRVFG---AALPETFDAILLDAPC  193 (470)
T ss_pred             EEEeCc---hhhhh---hhchhhcCeEEEcCCC
Confidence            333322   21111   1234579999976653

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.98  E-value=9.7e-06  Score=60.95  Aligned_cols=86  Identities=17%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .++.+|||-+.|-|+.++.+.+.|+ +|+-++.++.++++|+-|==.          .++.-..++....+..+......
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwS----------r~l~~~~i~iilGD~~e~V~~~~  202 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWS----------RELFEIAIKIILGDAYEVVKDFD  202 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCC----------ccccccccEEecccHHHHHhcCC
Confidence            4788999999999999999999998 999999999999998876211          11222222323333333333335


Q ss_pred             CCCCcEEEEccccccCC
Q 030274          152 PGGFDLILGADIYILYN  168 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~  168 (180)
                      +.+||+||-.||=+...
T Consensus       203 D~sfDaIiHDPPRfS~A  219 (287)
T COG2521         203 DESFDAIIHDPPRFSLA  219 (287)
T ss_pred             ccccceEeeCCCccchh
Confidence            66899999999866533

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.93  E-value=1.1e-05  Score=60.13  Aligned_cols=93  Identities=12%  Similarity=0.025  Sum_probs=69.7

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      +.+|..+....   ....|+|..||.|.-.+..|..+..|+++|+++.-+..|+.|++.-|.      ..++.+.+.+|.
T Consensus        83 ~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI------~~rItFI~GD~l  153 (263)
T KOG2730|consen   83 EHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV------PDRITFICGDFL  153 (263)
T ss_pred             HHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC------CceeEEEechHH
Confidence            44455444332   445899999999999999999999999999999999999999999984      236777777777


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      +.-...   ......+|++..+++-
T Consensus       154 d~~~~l---q~~K~~~~~vf~sppw  175 (263)
T KOG2730|consen  154 DLASKL---KADKIKYDCVFLSPPW  175 (263)
T ss_pred             HHHHHH---hhhhheeeeeecCCCC
Confidence            542221   2234458899998873

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.92  E-value=0.00011  Score=58.87  Aligned_cols=123  Identities=13%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCCh-HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCC-CC--CC
Q 030274           54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGV-TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENP-NS--DA  129 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~-~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~-~~--~~  129 (180)
                      ..|=-+.++..++.+.....++.+|||||||-|. +.-+.......++++|++...++.|++..+........ ..  .-
T Consensus        42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f  121 (331)
T PF03291_consen   42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF  121 (331)
T ss_dssp             HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC
T ss_pred             hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccc
Confidence            3788888888887755444477899999999765 44444444579999999999999999988443211000 00  01


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                      .......+-... .+...+.....+||+|=|=-.+++ .........++
T Consensus       122 ~a~f~~~D~f~~-~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l  169 (331)
T PF03291_consen  122 IAEFIAADCFSE-SLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFL  169 (331)
T ss_dssp             EEEEEESTTCCS-HHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHH
T ss_pred             hhheeccccccc-hhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHH
Confidence            111222211111 111111112358999988887765 44444444444

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.88  E-value=2e-05  Score=59.53  Aligned_cols=49  Identities=18%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHh
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..+.++.+||+||-+|.+++.+|+. + ..|.++|+++..+..|++|++.-
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            3467889999999999999999985 4 58999999999999999998653

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.88  E-value=9e-05  Score=55.59  Aligned_cols=74  Identities=18%  Similarity=0.344  Sum_probs=50.4

Q ss_pred             CCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           75 ASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      +++++|||+|.|++|+.+|-.  ..+|+.+|....-+..++.-...-++.       ++.+.   .+..+++..     .
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-------nv~i~---~~RaE~~~~-----~  132 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-------NVEIV---HGRAEEFGQ-----E  132 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-------CeEEe---hhhHhhccc-----c
Confidence            579999999999999998843  467999999887777777666665421       23333   333332211     1


Q ss_pred             CC-CcEEEEccc
Q 030274          153 GG-FDLILGADI  163 (180)
Q Consensus       153 ~~-fD~Ii~~d~  163 (180)
                      .+ ||+|.+--+
T Consensus       133 ~~~~D~vtsRAv  144 (215)
T COG0357         133 KKQYDVVTSRAV  144 (215)
T ss_pred             cccCcEEEeehc
Confidence            13 999998654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=3.4e-05  Score=57.15  Aligned_cols=48  Identities=27%  Similarity=0.398  Sum_probs=41.7

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      +.++.+.||+|+|+|+++.+++++    |..++++|.-+++++..++|+...
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD  131 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence            348899999999999999998865    345599999999999999999875

>PLN02823 spermine synthase

Probab=97.88  E-value=6.6e-05  Score=60.19  Aligned_cols=79  Identities=22%  Similarity=0.400  Sum_probs=53.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||.||+|.|..+..+.+.  ..+|+++|+++++++.+++++..++...   ...++++.   .++.  ... +...
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~---~dprv~v~---~~Da--~~~-L~~~  173 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF---CDKRLELI---INDA--RAE-LEKR  173 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc---cCCceEEE---EChh--HHH-HhhC
Confidence            4568999999999888876664  3689999999999999999976543110   11233333   2222  222 2334


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      .++||+|+..
T Consensus       174 ~~~yDvIi~D  183 (336)
T PLN02823        174 DEKFDVIIGD  183 (336)
T ss_pred             CCCccEEEec
Confidence            5789999976

>PHA01634 hypothetical protein

Probab=97.84  E-value=0.00015  Score=49.59  Aligned_cols=48  Identities=13%  Similarity=0.103  Sum_probs=44.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           73 LQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ..+++|+|+|++.|-.++.++..| .+|++.+.++...+..++|++.|+
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            478999999999999999988887 589999999999999999999986

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.82  E-value=0.00018  Score=57.42  Aligned_cols=99  Identities=9%  Similarity=0.013  Sum_probs=60.5

Q ss_pred             chHHHHHHHHhhCC-------CCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           57 PGAMLMNDYLSKNP-------DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        57 ~~~~~l~~~l~~~~-------~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      .++.+|.+.+....       ...++.++|||||++|.++-.+.+.|.+|+++|..+ +-    .++..+         .
T Consensus       187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~---------~  252 (357)
T PRK11760        187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDT---------G  252 (357)
T ss_pred             hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCC---------C
Confidence            34566666654432       135788999999999999999999999999999654 22    222222         2


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      ++.....+-....      + ..+.+|+++|.-+.+..-...++...
T Consensus       253 ~V~h~~~d~fr~~------p-~~~~vDwvVcDmve~P~rva~lm~~W  292 (357)
T PRK11760        253 QVEHLRADGFKFR------P-PRKNVDWLVCDMVEKPARVAELMAQW  292 (357)
T ss_pred             CEEEEeccCcccC------C-CCCCCCEEEEecccCHHHHHHHHHHH
Confidence            3333322211110      0 14579999887766655444555443

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.80  E-value=8.4e-05  Score=55.54  Aligned_cols=93  Identities=12%  Similarity=0.135  Sum_probs=48.8

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCC--CCCCCCCcEEEEEeecCCCchhhH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSS--ENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ...++...+|||||.|-.-+.+|.. + .+.+|+|+.+...+.++.+.+.....  .-.....++.+...++.+.+....
T Consensus        39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~  118 (205)
T PF08123_consen   39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD  118 (205)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence            3456789999999999877766643 4 56999999998887776655432100  000012234444555554332221


Q ss_pred             HHhhCCCCCcEEEEccccccC
Q 030274          147 IIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      .    -...|+|++|...|.+
T Consensus       119 ~----~s~AdvVf~Nn~~F~~  135 (205)
T PF08123_consen  119 I----WSDADVVFVNNTCFDP  135 (205)
T ss_dssp             H----GHC-SEEEE--TTT-H
T ss_pred             h----hcCCCEEEEeccccCH
Confidence            1    2467999999988763

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.76  E-value=0.00013  Score=54.22  Aligned_cols=99  Identities=16%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             CCCeEEEeCCcCCh----HHHHHhhc-----C--CeEEEecCCHHHHHHHHHHHHHh-cCCC------------------
Q 030274           74 QASSILELGSGVGV----TGILCSRF-----C--REVLLTDHNEEVLKILKKNIEHH-TSSE------------------  123 (180)
Q Consensus        74 ~~~~vLdlG~G~G~----~~l~la~~-----~--~~V~~~D~~~~~l~~~~~n~~~n-~~~~------------------  123 (180)
                      +..+|+-.||+||-    +++.+...     +  .+++|||+|+.+++.|++-+-.. ....                  
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            44699999999993    44445441     2  48999999999999988532110 0000                  


Q ss_pred             --CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc-cc--CCchhhHHHHHHh
Q 030274          124 --NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY-IL--YNRSLLMTSFFQA  179 (180)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~--~~~~~l~~~~~~a  179 (180)
                        .+.....+.+..++..+..       ...++||+|+|..|+ |.  .....+++.|.++
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~-------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~  164 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPD-------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRS  164 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGG
T ss_pred             eEChHHcCceEEEecccCCCC-------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHH
Confidence              0011235666666665511       135689999999995 44  2334555555544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=97.75  E-value=1.5e-05  Score=61.45  Aligned_cols=125  Identities=19%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      ...+|..+|+++..|..++.+++....+.++.++|||++......++..--|...+....+.-....+...+... ..  
T Consensus        64 ~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~~--  140 (262)
T KOG2497|consen   64 LARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRDL-SL--  140 (262)
T ss_pred             HHHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhccccc-cc--
Confidence            356788999999999999999998778899999999999888777776555555554444444444443333210 00  


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      ..+-+.-.++|........   .....+|+|+++|+.|......+++.+..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~---~~~~~~dll~~AdV~yd~~~~~~~~~~~~  188 (262)
T KOG2497|consen  141 EVRDSAPELNQAFLESKPE---TSQEFTDLLGGADVIYDTELRHLLETLMT  188 (262)
T ss_pred             cccccchhHHHHHHhcCcc---cccchhhheeccCeeehhhhhHHHHHHHH
Confidence            0000111112211110000   01234899999999999665565655543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.74  E-value=0.00022  Score=55.69  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=36.1

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHH
Q 030274           72 VLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      .+...+|||+|||+|....++...   -.+++++|.|+.+++.++.-++.
T Consensus        31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~   80 (274)
T PF09243_consen   31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA   80 (274)
T ss_pred             CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence            457789999999999755444332   36899999999999988875543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.70  E-value=0.00019  Score=55.75  Aligned_cols=100  Identities=15%  Similarity=0.209  Sum_probs=59.1

Q ss_pred             CCCeEEEeCCcCC----hHHHHHhhc-------CCeEEEecCCHHHHHHHHHHHHH-----hcCCC---------C----
Q 030274           74 QASSILELGSGVG----VTGILCSRF-------CREVLLTDHNEEVLKILKKNIEH-----HTSSE---------N----  124 (180)
Q Consensus        74 ~~~~vLdlG~G~G----~~~l~la~~-------~~~V~~~D~~~~~l~~~~~n~~~-----n~~~~---------~----  124 (180)
                      ..-+|.-.||+||    .+++.+...       ..+|+|||+|..+++.|+.-+-.     .+.+.         .    
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            3569999999999    345554443       25899999999999999843311     11110         0    


Q ss_pred             ----CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc-cc--CCchhhHHHHHHhC
Q 030274          125 ----PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY-IL--YNRSLLMTSFFQAI  180 (180)
Q Consensus       125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~--~~~~~l~~~~~~al  180 (180)
                          +.....+.+..++.....       ...+.||+|+|-+|+ |.  +....++..|.++|
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~-------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L  231 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDS-------PFLGKFDLIFCRNVLIYFDEETQERILRRFADSL  231 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCc-------cccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHh
Confidence                011122333333333221       035689999999994 55  34446666666543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.66  E-value=0.00045  Score=51.34  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             eEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           77 SILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      +|||||||||--+..+|+.  .....-+|.++..+...+..+...+...... ...+++..-.|.....    ......+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~-P~~lDv~~~~w~~~~~----~~~~~~~  102 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP-PLALDVSAPPWPWELP----APLSPES  102 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC-CeEeecCCCCCccccc----cccCCCC
Confidence            6999999999999888875  4678899999988888887777765321110 1112222222222100    0013568


Q ss_pred             CcEEEEccccccC
Q 030274          155 FDLILGADIYILY  167 (180)
Q Consensus       155 fD~Ii~~d~~y~~  167 (180)
                      ||.|++..+++-.
T Consensus       103 ~D~i~~~N~lHI~  115 (204)
T PF06080_consen  103 FDAIFCINMLHIS  115 (204)
T ss_pred             cceeeehhHHHhc
Confidence            9999999998763

The function of this family is unknown.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.65  E-value=8.8e-05  Score=56.08  Aligned_cols=77  Identities=21%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             eEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           77 SILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      +|||+|||.|-....+.+-    +-+|.+.|.++.+++..++|...+..        ++..-.-+..... +  ..+...
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~--------~~~afv~Dlt~~~-~--~~~~~~  142 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES--------RVEAFVWDLTSPS-L--KEPPEE  142 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh--------hhcccceeccchh-c--cCCCCc
Confidence            7999999999877766653    26899999999999999998766531        1111112222211 0  012346


Q ss_pred             CCCcEEEEcccc
Q 030274          153 GGFDLILGADIY  164 (180)
Q Consensus       153 ~~fD~Ii~~d~~  164 (180)
                      +++|+|++--++
T Consensus       143 ~svD~it~IFvL  154 (264)
T KOG2361|consen  143 GSVDIITLIFVL  154 (264)
T ss_pred             CccceEEEEEEE
Confidence            789999887765

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.62  E-value=0.00053  Score=50.89  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=52.2

Q ss_pred             eEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           77 SILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      .+||||||.|-..+.+|+.  ...++|+|.....+..+...+...++       .++.+...+....  +..+.  .+++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-------~Nv~~~~~da~~~--l~~~~--~~~~   88 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-------KNVRFLRGDAREL--LRRLF--PPGS   88 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-------SSEEEEES-CTTH--HHHHS--TTTS
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-------cceEEEEccHHHH--Hhhcc--cCCc
Confidence            8999999999988888875  58999999999999999888888763       3555555444331  22221  2468


Q ss_pred             CcEEEEccc
Q 030274          155 FDLILGADI  163 (180)
Q Consensus       155 fD~Ii~~d~  163 (180)
                      +|-|..+-|
T Consensus        89 v~~i~i~FP   97 (195)
T PF02390_consen   89 VDRIYINFP   97 (195)
T ss_dssp             EEEEEEES-
T ss_pred             hheEEEeCC
Confidence            887665544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.59  E-value=0.00036  Score=52.23  Aligned_cols=88  Identities=20%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             CCCeEEEeCCcCChHHH-HHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE-eecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGI-LCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK-LEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l-~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  151 (180)
                      ...++||.|||.|.++- .|.+...+|-.+|..+..++.|++.+.....        +  +.. +..+    ++.+.+ .
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--------~--v~~~~~~g----LQ~f~P-~  119 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--------R--VGEFYCVG----LQDFTP-E  119 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--------C--EEEEEES-----GGG-----
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--------C--cceEEecC----HhhccC-C
Confidence            45699999999999997 4566678999999999999999987655321        1  222 2222    222221 2


Q ss_pred             CCCCcEEEEccccccCCchhhHHHH
Q 030274          152 PGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      ..+||+|++-.|+-|-...+++.=|
T Consensus       120 ~~~YDlIW~QW~lghLTD~dlv~fL  144 (218)
T PF05891_consen  120 EGKYDLIWIQWCLGHLTDEDLVAFL  144 (218)
T ss_dssp             TT-EEEEEEES-GGGS-HHHHHHHH
T ss_pred             CCcEeEEEehHhhccCCHHHHHHHH
Confidence            4699999999998775555554433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00016  Score=59.13  Aligned_cols=47  Identities=17%  Similarity=0.338  Sum_probs=42.3

Q ss_pred             CeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCC
Q 030274           76 SSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSS  122 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~  122 (180)
                      ..|||+|+|||++++++++.|+ .|++++.-..|.+.|++-...|+.+
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S  115 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS  115 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence            3699999999999999999874 8999999999999999999999843

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=97.55  E-value=0.00013  Score=59.23  Aligned_cols=69  Identities=23%  Similarity=0.272  Sum_probs=54.7

Q ss_pred             CcCceecchHHHHHHH--HhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           50 LTGQLVWPGAMLMNDY--LSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~--l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      .+|.+.|.+- +..+.  +...  ..++..|.|+.||.|-+++.+++.+.+|++-|.++++++.++.|+..|..
T Consensus       226 DfskVYWnsR-L~~Eherlsg~--fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv  296 (495)
T KOG2078|consen  226 DFSKVYWNSR-LSHEHERLSGL--FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV  296 (495)
T ss_pred             ecceEEeecc-chhHHHHHhhc--cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence            3677789843 32222  1111  22677899999999999999999999999999999999999999999973

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.53  E-value=2.8e-05  Score=57.57  Aligned_cols=104  Identities=21%  Similarity=0.314  Sum_probs=69.6

Q ss_pred             cCceecchHHHHHHHHhhC-CCC-CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274           51 TGQLVWPGAMLMNDYLSKN-PDV-LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSD  128 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~-~~~-~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~  128 (180)
                      .|...-.+...+.++|.-. +.. ....++||||+|-|-+++.++..-.+|.+|+.|..|...+++. .-|         
T Consensus        87 rGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk-~yn---------  156 (288)
T KOG3987|consen   87 RGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK-NYN---------  156 (288)
T ss_pred             cCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc-CCc---------
Confidence            3444555666777776544 322 2347999999999999999998888999999998888777643 111         


Q ss_pred             CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274          129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                        + ...++|.+.+          -+||+|.|-.++-. .++-.|+..+.
T Consensus       157 --V-l~~~ew~~t~----------~k~dli~clNlLDRc~~p~kLL~Di~  193 (288)
T KOG3987|consen  157 --V-LTEIEWLQTD----------VKLDLILCLNLLDRCFDPFKLLEDIH  193 (288)
T ss_pred             --e-eeehhhhhcC----------ceeehHHHHHHHHhhcChHHHHHHHH
Confidence              0 2456777642          47888888776533 34445555443

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.52  E-value=0.00058  Score=51.35  Aligned_cols=82  Identities=15%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+.+++||||.-||+.++..|..   +.+|+++|+++...+...+-.+..+..      .++.++.-.-  .+.+..++.
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~------~KI~~i~g~a--~esLd~l~~  143 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD------HKITFIEGPA--LESLDELLA  143 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc------ceeeeeecch--hhhHHHHHh
Confidence            36789999999999999888764   689999999999999998888877622      2233322211  123444433


Q ss_pred             h-CCCCCcEEEEcc
Q 030274          150 K-YPGGFDLILGAD  162 (180)
Q Consensus       150 ~-~~~~fD~Ii~~d  162 (180)
                      . ..+.||+++...
T Consensus       144 ~~~~~tfDfaFvDa  157 (237)
T KOG1663|consen  144 DGESGTFDFAFVDA  157 (237)
T ss_pred             cCCCCceeEEEEcc
Confidence            2 356899988754

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.51  E-value=0.00011  Score=57.73  Aligned_cols=42  Identities=17%  Similarity=0.231  Sum_probs=32.3

Q ss_pred             CCeEEEeCCcCC----hHHHHHhhc------CCeEEEecCCHHHHHHHHHHH
Q 030274           75 ASSILELGSGVG----VTGILCSRF------CREVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        75 ~~~vLdlG~G~G----~~~l~la~~------~~~V~~~D~~~~~l~~~~~n~  116 (180)
                      .-+|+-.||.||    .+++.+...      ..+|+|||+|+.+++.|++-+
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~  167 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI  167 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence            369999999999    344444442      247999999999999998663

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.0024  Score=47.49  Aligned_cols=87  Identities=14%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .++..|.+...+..-..++.+|+||||-.|.++..+++..   .+|+++|+.|-                  ....++..
T Consensus        28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------------~~~~~V~~   89 (205)
T COG0293          28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------------KPIPGVIF   89 (205)
T ss_pred             hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------------ccCCCceE
Confidence            3556676666666334467899999999999999999863   34999999763                  01234667


Q ss_pred             EEeecCCCchhhHHHhhCCC-CCcEEEEc
Q 030274          134 AKLEWGNSDQINKIIQKYPG-GFDLILGA  161 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~-~fD~Ii~~  161 (180)
                      .+.++...+....+...... .+|+|++.
T Consensus        90 iq~d~~~~~~~~~l~~~l~~~~~DvV~sD  118 (205)
T COG0293          90 LQGDITDEDTLEKLLEALGGAPVDVVLSD  118 (205)
T ss_pred             EeeeccCccHHHHHHHHcCCCCcceEEec
Confidence            88889988877776555444 46999843

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.27  E-value=0.0021  Score=48.66  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             ceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHH
Q 030274           53 QLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEV  108 (180)
Q Consensus        53 ~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~  108 (180)
                      ..+-.++..|...+....-..+++++||+|+-||-++.++.+.| .+|+++|..-..
T Consensus        58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Q  114 (245)
T COG1189          58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQ  114 (245)
T ss_pred             CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCc
Confidence            34667889999999887766799999999999999999999886 599999987643

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.27  E-value=0.00056  Score=51.61  Aligned_cols=88  Identities=10%  Similarity=0.161  Sum_probs=58.1

Q ss_pred             CCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           75 ASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ...++|||||.|.+.-.+...+ .+++.+|.|-.|++.++.. +.++          +....+ .++. +.   ++....
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~----------i~~~~~-v~DE-E~---Ldf~en  136 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPS----------IETSYF-VGDE-EF---LDFKEN  136 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCc----------eEEEEE-ecch-hc---cccccc
Confidence            3579999999999888776665 6899999999999988753 2222          222222 2222 22   223467


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHH
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ++|+||++--++| .+-+.-+-.+.+
T Consensus       137 s~DLiisSlslHW~NdLPg~m~~ck~  162 (325)
T KOG2940|consen  137 SVDLIISSLSLHWTNDLPGSMIQCKL  162 (325)
T ss_pred             chhhhhhhhhhhhhccCchHHHHHHH
Confidence            9999999998888 344443444433

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.26  E-value=0.0007  Score=52.93  Aligned_cols=41  Identities=12%  Similarity=0.148  Sum_probs=35.6

Q ss_pred             eEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHH
Q 030274           77 SILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~  117 (180)
                      +|+||.||.|..++-+.+.|. .|.++|.++.+++..+.|..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence            699999999999888888775 57889999999999988863

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.22  E-value=0.00074  Score=50.54  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHH
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~  114 (180)
                      -+-...|.+.+.+... .++..|||-.||+|..++++.+++.+.+++|++++..+.|++
T Consensus       174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3344666666665432 267899999999999999999999999999999999888864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.22  E-value=0.007  Score=48.80  Aligned_cols=82  Identities=17%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ...+||-||.|-|+..-.+.|.  -.+++.+|.+|+|++.+++|......+...-...++++..-|     .+ ++++..
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD-----Af-~wlr~a  362 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD-----AF-QWLRTA  362 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc-----HH-HHHHhh
Confidence            4468999999999988887775  369999999999999999776543322222223445544322     22 223345


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      ...||.||..
T Consensus       363 ~~~fD~vIVD  372 (508)
T COG4262         363 ADMFDVVIVD  372 (508)
T ss_pred             cccccEEEEe
Confidence            5689998864

>PRK11524 putative methyltransferase; Provisional

Probab=97.21  E-value=0.0015  Score=51.31  Aligned_cols=59  Identities=14%  Similarity=0.106  Sum_probs=48.5

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..|.+.+.+... .+|..|||-.||+|..++++.+.|.+.+++|++++-.+.+++.+...
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~~  253 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDVA  253 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence            455555444332 37889999999999999999999999999999999999999998654

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.20  E-value=0.0051  Score=46.82  Aligned_cols=101  Identities=16%  Similarity=0.244  Sum_probs=57.8

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      +...+..+..=+.|+.+... ..+++||=+|=+- +.|+++|.  ...+|+.+|+++.+++..++.++..+.        
T Consensus        23 ~~~T~eT~~~Ra~~~~~~gd-L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--------   92 (243)
T PF01861_consen   23 GYATPETTLRRAALMAERGD-LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--------   92 (243)
T ss_dssp             --B-HHHHHHHHHHHHHTT--STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------
T ss_pred             ccccHHHHHHHHHHHHhcCc-ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--------
Confidence            33345555555667776654 4789999998443 56666654  458999999999999999999999872        


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ++.....+..+.-     .+...++||++++.||+=..
T Consensus        93 ~i~~~~~DlR~~L-----P~~~~~~fD~f~TDPPyT~~  125 (243)
T PF01861_consen   93 PIEAVHYDLRDPL-----PEELRGKFDVFFTDPPYTPE  125 (243)
T ss_dssp             -EEEE---TTS--------TTTSS-BSEEEE---SSHH
T ss_pred             ceEEEEecccccC-----CHHHhcCCCEEEeCCCCCHH
Confidence            2666666666551     11246899999999986443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.19  E-value=0.0036  Score=48.51  Aligned_cols=76  Identities=13%  Similarity=0.093  Sum_probs=53.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ..++||=+|.|-|...-.+.|...+|+.+|+++++++.+++-+......   -...++.+..  |.        .....+
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~---~~DpRv~l~~--~~--------~~~~~~  138 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV---KNNKNFTHAK--QL--------LDLDIK  138 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh---hcCCCEEEee--hh--------hhccCC
Confidence            4579999999999998888887669999999999999999865543211   1123444442  21        111246


Q ss_pred             CCcEEEEcc
Q 030274          154 GFDLILGAD  162 (180)
Q Consensus       154 ~fD~Ii~~d  162 (180)
                      +||+||...
T Consensus       139 ~fDVIIvDs  147 (262)
T PRK00536        139 KYDLIICLQ  147 (262)
T ss_pred             cCCEEEEcC
Confidence            899999663

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0045  Score=50.17  Aligned_cols=81  Identities=17%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++.+|||++++.|.=+..+|..    +..|++.|.++.-++.++.|++..|..       ++.+...+-.....   ..
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-------nv~~~~~d~~~~~~---~~  224 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-------NVIVVNKDARRLAE---LL  224 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------ceEEEecccccccc---cc
Confidence            36789999999998666655554    356899999999999999999999832       22233322221111   00


Q ss_pred             hhCCCCCcEEEEcccc
Q 030274          149 QKYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~  164 (180)
                       ....+||.|+...|+
T Consensus       225 -~~~~~fD~iLlDaPC  239 (355)
T COG0144         225 -PGGEKFDRILLDAPC  239 (355)
T ss_pred             -cccCcCcEEEECCCC
Confidence             012269999988764

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.15  E-value=0.0082  Score=46.96  Aligned_cols=83  Identities=14%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CCCeEEEeCCcCChHHH-HHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGI-LCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l-~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..-+||||.||.|.--+ ++.+.   ..+|...|+++..++..++-++.+++..      -+++.+.+-.+.+.+..   
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~------i~~f~~~dAfd~~~l~~---  205 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED------IARFEQGDAFDRDSLAA---  205 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc------ceEEEecCCCCHhHhhc---
Confidence            45699999999996544 33333   2589999999999999999999988432      22455554444333222   


Q ss_pred             hCCCCCcEEEEcccccc
Q 030274          150 KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~  166 (180)
                       ...++++++.+-++-.
T Consensus       206 -l~p~P~l~iVsGL~El  221 (311)
T PF12147_consen  206 -LDPAPTLAIVSGLYEL  221 (311)
T ss_pred             -cCCCCCEEEEecchhh
Confidence             3457899999997633

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.0096  Score=46.08  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=58.4

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      .+..+|.+|||-|+|+|.++.++++.-   .+++-.|+...-.+.+++-++..+      ...++.+..-|....--.  
T Consensus       101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg------i~~~vt~~hrDVc~~GF~--  172 (314)
T KOG2915|consen  101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG------IGDNVTVTHRDVCGSGFL--  172 (314)
T ss_pred             hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC------CCcceEEEEeecccCCcc--
Confidence            345689999999999999999999863   689999999888888888888887      334555555554433110  


Q ss_pred             HHhhCCCCCcEEEEccc
Q 030274          147 IIQKYPGGFDLILGADI  163 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d~  163 (180)
                         .....+|.|...=|
T Consensus       173 ---~ks~~aDaVFLDlP  186 (314)
T KOG2915|consen  173 ---IKSLKADAVFLDLP  186 (314)
T ss_pred             ---ccccccceEEEcCC
Confidence               01345666655443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.06  E-value=0.0031  Score=49.51  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=61.8

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL  131 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~  131 (180)
                      ++..+-.++-.+.. +  .++.+|||++|+.|.=+..++..   ...|++.|.++.-+..++.|++..|..       ++
T Consensus        69 vQd~sS~l~~~~L~-~--~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-------~v  138 (283)
T PF01189_consen   69 VQDESSQLVALALD-P--QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-------NV  138 (283)
T ss_dssp             EHHHHHHHHHHHHT-T--TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-------SE
T ss_pred             eccccccccccccc-c--cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-------eE
Confidence            55555444443332 2  26778999999999877777664   269999999999999999999998732       23


Q ss_pred             EEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          132 AVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      .+..   .  +............||.|+...|.
T Consensus       139 ~~~~---~--D~~~~~~~~~~~~fd~VlvDaPC  166 (283)
T PF01189_consen  139 IVIN---A--DARKLDPKKPESKFDRVLVDAPC  166 (283)
T ss_dssp             EEEE---S--HHHHHHHHHHTTTEEEEEEECSC
T ss_pred             EEEe---e--ccccccccccccccchhhcCCCc
Confidence            3333   2  21111111123469999987764

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.06  E-value=0.0013  Score=48.02  Aligned_cols=51  Identities=16%  Similarity=0.085  Sum_probs=39.3

Q ss_pred             chHHHHHHHHhhCCCCC--CCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHH
Q 030274           57 PGAMLMNDYLSKNPDVL--QASSILELGSGVGVTGILCSRFC---REVLLTDHNEE  107 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~--~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~  107 (180)
                      .++.+|.+.+.+..-..  .+.+||||||++|.++..+.+.+   .+|+++|..+.
T Consensus         4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            46677887777655222  44799999999999999999877   79999999765

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.06  E-value=0.0016  Score=50.15  Aligned_cols=79  Identities=15%  Similarity=0.294  Sum_probs=52.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +.++||=||.|.|...-.+.+..  .+|+++|+++.+++.+++-+......   ....++++.   .++.  .. ++...
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~---~~d~r~~i~---~~Dg--~~-~l~~~  146 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG---LDDPRVRII---IGDG--RK-FLKET  146 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT---GGSTTEEEE---ESTH--HH-HHHTS
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc---cCCCceEEE---Ehhh--HH-HHHhc
Confidence            56799999999998888887764  79999999999999999987764311   012234443   2222  22 23334


Q ss_pred             CC-CCcEEEEc
Q 030274          152 PG-GFDLILGA  161 (180)
Q Consensus       152 ~~-~fD~Ii~~  161 (180)
                      .. +||+|+..
T Consensus       147 ~~~~yDvIi~D  157 (246)
T PF01564_consen  147 QEEKYDVIIVD  157 (246)
T ss_dssp             SST-EEEEEEE
T ss_pred             cCCcccEEEEe
Confidence            45 89999974

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK13699 putative methylase; Provisional

Probab=97.03  E-value=0.0033  Score=47.75  Aligned_cols=59  Identities=12%  Similarity=0.036  Sum_probs=48.0

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..|.+.+.+... .++..|||-.||+|..++++.+.|.+++++|++++-.+.+.+.++..
T Consensus       150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            455555554322 26789999999999999999999999999999999999998887664

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.03  E-value=0.0031  Score=47.84  Aligned_cols=45  Identities=18%  Similarity=0.155  Sum_probs=39.7

Q ss_pred             CeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           76 SSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ..+||||||.|-.-+.+|+..  ..++|+|+....+..+.+.+...+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~   96 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG   96 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC
Confidence            489999999999999888874  689999999999998888888876

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.02  E-value=0.00079  Score=53.55  Aligned_cols=84  Identities=21%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHH-------HHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           71 DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLK-------ILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      ...+|+.|+|=..|||.+-+..|+.|+-|+++|++-.++.       ..+.|++..+.+     ..-+.+...|+.+..-
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~-----~~fldvl~~D~sn~~~  279 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-----SQFLDVLTADFSNPPL  279 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc-----chhhheeeecccCcch
Confidence            3457889999999999998899999999999999887766       345666665521     1123345555554421


Q ss_pred             hhHHHhhCCCCCcEEEEccccc
Q 030274          144 INKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                           . ....||.|||.||+=
T Consensus       280 -----r-sn~~fDaIvcDPPYG  295 (421)
T KOG2671|consen  280 -----R-SNLKFDAIVCDPPYG  295 (421)
T ss_pred             -----h-hcceeeEEEeCCCcc
Confidence                 1 145899999999863

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.01  E-value=0.0041  Score=48.77  Aligned_cols=78  Identities=14%  Similarity=0.316  Sum_probs=54.1

Q ss_pred             CeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++||-||-|.|...-.+.+..  .+++.+|+++.+++.+++-+........   ..++.+.   ..+.  . .+++....
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~---dpRv~i~---i~Dg--~-~~v~~~~~  148 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD---DPRVEII---IDDG--V-EFLRDCEE  148 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC---CCceEEE---eccH--H-HHHHhCCC
Confidence            699999999999999888875  7999999999999999988765431110   1233322   2222  2 22333455


Q ss_pred             CCcEEEEcc
Q 030274          154 GFDLILGAD  162 (180)
Q Consensus       154 ~fD~Ii~~d  162 (180)
                      +||+||..-
T Consensus       149 ~fDvIi~D~  157 (282)
T COG0421         149 KFDVIIVDS  157 (282)
T ss_pred             cCCEEEEcC
Confidence            899999754

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.93  E-value=0.0044  Score=46.37  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             EEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           78 ILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        78 vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      |.|+||-=|++++.|.+.+  .+|+++|+++..++.|++|++..+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l   46 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL   46 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            6899999999999999987  4899999999999999999999873

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.90  E-value=0.0029  Score=53.44  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=55.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-C-----CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGILCSRF-C-----REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~-----~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      +..+|+|-.||+|..-+..++. +     ...++.|.++....+++.|.-.++..          . ...+...+.+..-
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----------~-~~~i~~~dtl~~~  254 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----------G-DANIRHGDTLSNP  254 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----------c-cccccccccccCC
Confidence            4459999999999766655542 1     45899999999999999999999732          1 2223333222211


Q ss_pred             H---hhCCCCCcEEEEccccc
Q 030274          148 I---QKYPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~---~~~~~~fD~Ii~~d~~y  165 (180)
                      .   .....+||+|+++||+.
T Consensus       255 ~~~~~~~~~~~D~viaNPPf~  275 (489)
T COG0286         255 KHDDKDDKGKFDFVIANPPFS  275 (489)
T ss_pred             cccccCCccceeEEEeCCCCC
Confidence            1   11346799999999987

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.89  E-value=0.00065  Score=53.02  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=43.1

Q ss_pred             CCCeEEEeCCcCChHHH-HHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCC
Q 030274           74 QASSILELGSGVGVTGI-LCSRFC-REVLLTDHNEEVLKILKKNIEHHTSS  122 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l-~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~  122 (180)
                      .+..|.||.+|.|++.+ .+.+.| +.|++.|.+|.+++.+++|++.|+..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~  244 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM  244 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence            45789999999999999 677776 58999999999999999999999743

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.86  E-value=0.0074  Score=47.83  Aligned_cols=104  Identities=14%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      +|=-+.++-.|..      ++..+++||||-|-=.+-.-+.| ..++++|+....++.|++......-... ...-.+.+
T Consensus       104 NwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-~~~f~a~f  176 (389)
T KOG1975|consen  104 NWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-KFIFTAVF  176 (389)
T ss_pred             HHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-cccceeEE
Confidence            4555555554442      55689999999987666555555 6899999999999999988876531100 00001222


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ...+-... .+...++....+||+|=|--++++
T Consensus       177 ~~~Dc~~~-~l~d~~e~~dp~fDivScQF~~HY  208 (389)
T KOG1975|consen  177 IAADCFKE-RLMDLLEFKDPRFDIVSCQFAFHY  208 (389)
T ss_pred             EEeccchh-HHHHhccCCCCCcceeeeeeeEee
Confidence            22221111 122222222345999877777655

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.83  E-value=0.0041  Score=50.02  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=41.9

Q ss_pred             CCeEEEeCCcCChHHHHHhhc-CC-eEEEecCCHHHHHHHHHHHHHhc
Q 030274           75 ASSILELGSGVGVTGILCSRF-CR-EVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ..+|+|--||||+=|+..|.- +. +|++-|+||.+.+.+++|+..|.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~  100 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS  100 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC
Confidence            679999999999999998875 34 89999999999999999999993

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.72  E-value=0.0031  Score=49.93  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             eEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCC
Q 030274           77 SILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGF  155 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  155 (180)
                      +++||.||.|.+++-+.+.|. -|.++|+++.+.+..+.|.. .             ....|....+. ..+ +  . .+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~-------------~~~~Di~~~~~-~~l-~--~-~~   62 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-E-------------VICGDITEIDP-SDL-P--K-DV   62 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-E-------------EEESHGGGCHH-HHH-H--H-T-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-c-------------ccccccccccc-ccc-c--c-cc
Confidence            799999999999999888884 68999999999999999876 2             34444443321 121 1  2 59


Q ss_pred             cEEEEcccccc
Q 030274          156 DLILGADIYIL  166 (180)
Q Consensus       156 D~Ii~~d~~y~  166 (180)
                      |++++.+|+-.
T Consensus        63 D~l~ggpPCQ~   73 (335)
T PF00145_consen   63 DLLIGGPPCQG   73 (335)
T ss_dssp             SEEEEE---TT
T ss_pred             eEEEeccCCce
Confidence            99999998633

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.62  E-value=0.0067  Score=45.38  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=39.7

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHh
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      +++.+.+.+.-... ...-++-|=+||.|++--.+.-+    -..|+++|++++++++|++|+...
T Consensus        36 AsEi~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL  100 (246)
T PF11599_consen   36 ASEIFQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL  100 (246)
T ss_dssp             HHHHHHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence            33444444433222 24458999999999765554432    368999999999999999998754

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=96.57  E-value=0.0062  Score=48.13  Aligned_cols=84  Identities=17%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             EEEeCCcCChH-HHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCC
Q 030274           78 ILELGSGVGVT-GILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGF  155 (180)
Q Consensus        78 vLdlG~G~G~~-~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  155 (180)
                      =+|||.|+-.+ .+.=++ .++..++||++...++.++.|+..|+.+      ..+.+....-...--.+.........|
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls------s~ikvV~~~~~ktll~d~~~~~~e~~y  179 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS------SLIKVVKVEPQKTLLMDALKEESEIIY  179 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc------cceeeEEecchhhcchhhhccCcccee
Confidence            47887776432 222223 3678999999999999999999999743      344444432221111111111123469


Q ss_pred             cEEEEccccccC
Q 030274          156 DLILGADIYILY  167 (180)
Q Consensus       156 D~Ii~~d~~y~~  167 (180)
                      |+..||||+|..
T Consensus       180 dFcMcNPPFfe~  191 (419)
T KOG2912|consen  180 DFCMCNPPFFEN  191 (419)
T ss_pred             eEEecCCchhhc
Confidence            999999999985

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.52  E-value=0.029  Score=42.17  Aligned_cols=48  Identities=15%  Similarity=0.147  Sum_probs=42.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      ++.++.|+||-=|++...+.+.+  ..+++.|+++..++.|.+|+..++.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l   65 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL   65 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC
Confidence            34469999999999999988864  6899999999999999999999973

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.48  E-value=0.035  Score=44.02  Aligned_cols=90  Identities=10%  Similarity=0.119  Sum_probs=58.8

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      +|.+.+.+.....++..++|.=+|.|.-+..+++.  ..+|+++|.++.+++.++++++...        .++.+.+-++
T Consensus         7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--------~R~~~i~~nF   78 (305)
T TIGR00006         7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--------GRVVLIHDNF   78 (305)
T ss_pred             hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--------CcEEEEeCCH
Confidence            34444444444446779999999999888877764  3799999999999999999876542        2355554444


Q ss_pred             CCCchhhHHHhh-CCCCCcEEEEc
Q 030274          139 GNSDQINKIIQK-YPGGFDLILGA  161 (180)
Q Consensus       139 ~~~~~~~~~~~~-~~~~fD~Ii~~  161 (180)
                      .+.   ...+.. ...++|.|+..
T Consensus        79 ~~l---~~~l~~~~~~~vDgIl~D   99 (305)
T TIGR00006        79 ANF---FEHLDELLVTKIDGILVD   99 (305)
T ss_pred             HHH---HHHHHhcCCCcccEEEEe
Confidence            432   222221 22467776653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.27  E-value=0.074  Score=40.82  Aligned_cols=47  Identities=13%  Similarity=0.208  Sum_probs=36.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ...+|+|||||.=-+++.....  +..+++.|++..+++.+..-+...+
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~  153 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG  153 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence            4679999999998888755543  4799999999999999998887775

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.19  E-value=0.0066  Score=49.58  Aligned_cols=78  Identities=19%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||.=||+|+=|+..++.  + .+|++-|+|+++++.+++|++.|+...     ..+.+.   ..+...   ++..
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-----~~~~v~---~~DAn~---ll~~  117 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-----ERIEVS---NMDANV---LLYS  117 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-----CCEEEE---ES-HHH---HHCH
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-----ceEEEe---hhhHHH---Hhhh
Confidence            3458999999999999998876  2 699999999999999999999998431     023332   222221   1112


Q ss_pred             CCCCCcEEEEcc
Q 030274          151 YPGGFDLILGAD  162 (180)
Q Consensus       151 ~~~~fD~Ii~~d  162 (180)
                      ....||+|=..|
T Consensus       118 ~~~~fD~IDlDP  129 (377)
T PF02005_consen  118 RQERFDVIDLDP  129 (377)
T ss_dssp             STT-EEEEEE--
T ss_pred             ccccCCEEEeCC
Confidence            466899885544

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.12  E-value=0.028  Score=47.81  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=38.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .+..+||||||.|-..+.+|+.  ...++|+|.....+..+.+.+...+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~  395 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN  395 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC
Confidence            3568999999999988888876  4789999999987777777766654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.11  E-value=0.012  Score=39.22  Aligned_cols=32  Identities=16%  Similarity=0.132  Sum_probs=27.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHN  105 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~  105 (180)
                      +....+|||||.|++--.|.+-|.+-.++|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            34579999999999999999999988999974

; GO: 0008168 methyltransferase activity

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.02  E-value=0.095  Score=35.54  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=28.8

Q ss_pred             EEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHH
Q 030274           78 ILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        78 vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~  116 (180)
                      ++|+|||+|... .+++..   ..++++|.++.++..++...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA   92 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence            999999999865 333332   48999999999888855443

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.87  E-value=0.025  Score=45.89  Aligned_cols=54  Identities=13%  Similarity=0.238  Sum_probs=40.1

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      ..|.+.+.+......-..|+|+|+|.|.++-+++- .|..|.++|.|....+.++
T Consensus       139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence            44555555544434556899999999999998885 4789999999976665554

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.78  E-value=0.016  Score=46.28  Aligned_cols=40  Identities=13%  Similarity=0.170  Sum_probs=34.4

Q ss_pred             EEEeCCcCChHHHHHhhcCCeE-EEecCCHHHHHHHHHHHH
Q 030274           78 ILELGSGVGVTGILCSRFCREV-LLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        78 vLdlG~G~G~~~l~la~~~~~V-~~~D~~~~~l~~~~~n~~  117 (180)
                      |+||.||.|..++-+.+.|.++ .++|+++.+.+..+.|..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~   41 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG   41 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence            6899999999998888888765 679999999999888853

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=95.73  E-value=0.048  Score=38.99  Aligned_cols=69  Identities=12%  Similarity=-0.018  Sum_probs=41.8

Q ss_pred             EEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          100 LLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       100 ~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      +++|.|++|++.|+++....+..    ...++.+...+..+.       +...++||+|+++.++.+ .+....++.+.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~----~~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~r   69 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS----CYKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYR   69 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc----CCCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHHH
Confidence            48999999999998776542210    011244443332221       224568999999988765 566665655554


Q ss_pred             h
Q 030274          179 A  179 (180)
Q Consensus       179 a  179 (180)
                      .
T Consensus        70 v   70 (160)
T PLN02232         70 V   70 (160)
T ss_pred             H
Confidence            3

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.70  E-value=0.12  Score=40.62  Aligned_cols=84  Identities=15%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ....++.||==|+|.|+   +++.+|++|++++..|+++...+...+.++.+|         ++..-.-|..+.+++...
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---------~~~~y~cdis~~eei~~~  104 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---------EAKAYTCDISDREEIYRL  104 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---------ceeEEEecCCCHHHHHHH
Confidence            34578899999999985   777788899999999999987777777766654         345566677777655443


Q ss_pred             ---HhhCCCCCcEEEEccc
Q 030274          148 ---IQKYPGGFDLILGADI  163 (180)
Q Consensus       148 ---~~~~~~~fD~Ii~~d~  163 (180)
                         .+..-+..|++|-|--
T Consensus       105 a~~Vk~e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  105 AKKVKKEVGDVDILVNNAG  123 (300)
T ss_pred             HHHHHHhcCCceEEEeccc
Confidence               3345678999888764

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.67  E-value=0.034  Score=44.59  Aligned_cols=43  Identities=14%  Similarity=0.167  Sum_probs=37.3

Q ss_pred             CCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHH
Q 030274           75 ASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ..+++||.||.|.+.+-+...|. -+.++|+++.+++..+.|..
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~   46 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP   46 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence            45899999999999988888885 57899999999999988865

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=95.66  E-value=0.029  Score=44.78  Aligned_cols=44  Identities=25%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             CCCeEEEeCCcCChH-HHHHhh---c--CCeEEEecCCHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVT-GILCSR---F--CREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~-~l~la~---~--~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ++..++|+|||.|.= .+.|..   .  ...++++|+|.++++.+..++.
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence            556899999999963 333222   2  3679999999999999999987

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.62  E-value=0.017  Score=48.33  Aligned_cols=62  Identities=18%  Similarity=0.185  Sum_probs=36.1

Q ss_pred             CceecchHHHHHHHHhhCCCC--CCC--CeEEEeCCcCChHHHHHhhcCCeEEEe---cCCHHHHHHHH
Q 030274           52 GQLVWPGAMLMNDYLSKNPDV--LQA--SSILELGSGVGVTGILCSRFCREVLLT---DHNEEVLKILK  113 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~--~~~--~~vLdlG~G~G~~~l~la~~~~~V~~~---D~~~~~l~~~~  113 (180)
                      |.....++..-.+.|.+....  ..+  ..+||+|||+|.+|..+...+-.+..+   |..+..++.|.
T Consensus        91 gt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal  159 (506)
T PF03141_consen   91 GTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL  159 (506)
T ss_pred             CccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh
Confidence            444444555555555554322  122  479999999999999888876433332   34334444443

; GO: 0008168 methyltransferase activity

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=95.48  E-value=0.021  Score=43.79  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=35.3

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~  113 (180)
                      .|+.++.+........+++|..||+|.+++.+.+.+.+|+.-|+++.++...+
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK   59 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence            35566665433225679999999999999888778889999999997666555

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.31  E-value=0.078  Score=42.21  Aligned_cols=46  Identities=30%  Similarity=0.426  Sum_probs=39.7

Q ss_pred             CCCCCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHH
Q 030274           69 NPDVLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKK  114 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~  114 (180)
                      ..+...+.+||=+|||. |+.++..|+. | .+|+.+|.++.-++.|++
T Consensus       164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            34455788999999998 9999988885 5 699999999999999998

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.08  E-value=0.022  Score=43.33  Aligned_cols=85  Identities=11%  Similarity=0.180  Sum_probs=42.6

Q ss_pred             CeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCC--CCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENP--NSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+|||.=+|-|.=++.+|..|.+|++++.|+-+...++.-++........  ....++++.+.+-...      +.....
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~------L~~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY------LRQPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH------CCCHSS
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH------HhhcCC
Confidence            38999999999999999989999999999996655555444332100000  0012455544433321      112356


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|-..|++-+
T Consensus       151 s~DVVY~DPMFp~  163 (234)
T PF04445_consen  151 SFDVVYFDPMFPE  163 (234)
T ss_dssp             --SEEEE--S---
T ss_pred             CCCEEEECCCCCC
Confidence            8999999766544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.01  E-value=0.074  Score=37.65  Aligned_cols=60  Identities=17%  Similarity=0.136  Sum_probs=45.7

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      +.+.+.|.-.+. .+..+.+|||+|-|.+-+..++.| ..-++++.++-.+...+...-..+
T Consensus        59 eQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g  119 (199)
T KOG4058|consen   59 EQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG  119 (199)
T ss_pred             HHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh
Confidence            444444443333 244589999999999999999998 688999999988888887776665

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.99  E-value=0.11  Score=41.68  Aligned_cols=74  Identities=20%  Similarity=0.243  Sum_probs=51.2

Q ss_pred             CCCCCCeEEEeCCc-CChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           71 DVLQASSILELGSG-VGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        71 ~~~~~~~vLdlG~G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ...++++|+=.|+| .|..++.+|+ .|++|+++|.+++-++.+++--.               ...+++.+.+..... 
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~~~~~~~~~-  226 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSSDSDALEAV-  226 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcCCchhhHHh-
Confidence            34578899999997 3678888888 68999999999998888876411               234445433333222 


Q ss_pred             hhCCCCCcEEEEccc
Q 030274          149 QKYPGGFDLILGADI  163 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~  163 (180)
                         .+.||+|+..-+
T Consensus       227 ---~~~~d~ii~tv~  238 (339)
T COG1064         227 ---KEIADAIIDTVG  238 (339)
T ss_pred             ---HhhCcEEEECCC
Confidence               234999887765

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.97  E-value=0.3  Score=38.22  Aligned_cols=79  Identities=14%  Similarity=0.141  Sum_probs=43.2

Q ss_pred             CCeEEEeCCcC-ChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHH-HhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           75 ASSILELGSGV-GVTGILCSRF---CREVLLTDHNEEVLKILKKNIE-HHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        75 ~~~vLdlG~G~-G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++|+=||||. -+.++.+++.   +..|+++|+++++.+.+++-+. ..++      ..++.+...+-....       
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L------~~~m~f~~~d~~~~~-------  187 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL------SKRMSFITADVLDVT-------  187 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-------SSEEEEES-GGGG--------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc------cCCeEEEecchhccc-------
Confidence            35999999997 8999999864   4689999999999999988776 2221      234555554433221       


Q ss_pred             hCCCCCcEEEEcccccc
Q 030274          150 KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~  166 (180)
                      ..-..||+|+.+-.+..
T Consensus       188 ~dl~~~DvV~lAalVg~  204 (276)
T PF03059_consen  188 YDLKEYDVVFLAALVGM  204 (276)
T ss_dssp             GG----SEEEE-TT-S-
T ss_pred             cccccCCEEEEhhhccc
Confidence            11358999998887763

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.88  E-value=0.15  Score=39.87  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ..++.|+=+| ---+.|++++--  ..+|..+|+++..++..++-++..++.       ++.+..++..++-  ..   .
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-------~ie~~~~Dlr~pl--pe---~  217 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-------NIEAFVFDLRNPL--PE---D  217 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-------chhheeehhcccC--hH---H
Confidence            4678899998 556777766654  479999999999999999988887632       3555566666542  11   2


Q ss_pred             CCCCCcEEEEcccc
Q 030274          151 YPGGFDLILGADIY  164 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~  164 (180)
                      ..++||+++..||.
T Consensus       218 ~~~kFDvfiTDPpe  231 (354)
T COG1568         218 LKRKFDVFITDPPE  231 (354)
T ss_pred             HHhhCCeeecCchh
Confidence            35799999998874

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=94.76  E-value=0.16  Score=38.34  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           73 LQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .++.+||++|=|.|++.-.+-... .+=+.++..+.+++.++.+.-..        ..++.+....|.+.-  ..+   .
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--------k~nViil~g~WeDvl--~~L---~  166 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--------KENVIILEGRWEDVL--NTL---P  166 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--------ccceEEEecchHhhh--ccc---c
Confidence            377899999999999887776553 45567899999999998875333        245667777888752  222   4


Q ss_pred             CCCCcEEEE
Q 030274          152 PGGFDLILG  160 (180)
Q Consensus       152 ~~~fD~Ii~  160 (180)
                      .+.||-|.-
T Consensus       167 d~~FDGI~y  175 (271)
T KOG1709|consen  167 DKHFDGIYY  175 (271)
T ss_pred             ccCcceeEe
Confidence            567998764

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.64  E-value=0.13  Score=41.55  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=42.0

Q ss_pred             HHHHHHHhhCCC---CCCCCeEEEeCCcCChHHHHHhhc----------CCeEEEecCCHHHHHHHHHHHHHh
Q 030274           60 MLMNDYLSKNPD---VLQASSILELGSGVGVTGILCSRF----------CREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        60 ~~l~~~l~~~~~---~~~~~~vLdlG~G~G~~~l~la~~----------~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      +.++.|+.+...   ......++|+|+|.|.++.-+.+.          ..++..++.|++....=+++++.-
T Consensus        60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            566777665322   223458999999999877654431          368999999998877777766554

>PRK08339 short chain dehydrogenase; Provisional

Probab=94.61  E-value=0.5  Score=36.33  Aligned_cols=84  Identities=17%  Similarity=0.268  Sum_probs=55.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=.|++.|+   ++..+++.|++|++++.++..++.+.+.+....       ..++.....|..+.+.+..+..
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~i~~~~~   78 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-------NVDVSYIVADLTKREDLERTVK   78 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------CCceEEEEecCCCHHHHHHHHH
Confidence            367789999987764   333455568999999998877666665554321       1246667778887765554433


Q ss_pred             h--CCCCCcEEEEccc
Q 030274          150 K--YPGGFDLILGADI  163 (180)
Q Consensus       150 ~--~~~~fD~Ii~~d~  163 (180)
                      .  ..++.|+++.+--
T Consensus        79 ~~~~~g~iD~lv~nag   94 (263)
T PRK08339         79 ELKNIGEPDIFFFSTG   94 (263)
T ss_pred             HHHhhCCCcEEEECCC
Confidence            2  1357899887753

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.52  E-value=0.098  Score=38.23  Aligned_cols=42  Identities=33%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             eEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           77 SILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        77 ~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      +|.=+|+|+ | .++..++..|.+|+..|.+++.++.+++.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~   44 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER   44 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence            356688887 5 56667777899999999999999888877665

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.43  E-value=0.28  Score=41.32  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=35.7

Q ss_pred             CCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHH
Q 030274           75 ASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~  116 (180)
                      ..+++||.||.|.+++-+-..|. -|.++|.++.+.+.-+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            45999999999988888877775 5688999999988888885

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.26  E-value=0.69  Score=35.04  Aligned_cols=62  Identities=19%  Similarity=0.173  Sum_probs=40.4

Q ss_pred             CceecchH-HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHH
Q 030274           52 GQLVWPGA-MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILK  113 (180)
Q Consensus        52 g~~~w~~~-~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~  113 (180)
                      ..++|..- -.|+..+..-   ....++.+||=||+.+|..--.++..   ...|++++.++.....+-
T Consensus        47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~  115 (229)
T PF01269_consen   47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLL  115 (229)
T ss_dssp             EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred             ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHH
Confidence            55677654 4566655443   33457889999999999877777664   358999999996555443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.53  Score=35.46  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           76 SSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++++=.|+. |.+|..+    ++.|.+|++++.+++-.+...+++....       ..++.+...|..+...+..+....
T Consensus         2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~   73 (243)
T PRK07102          2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-------AVAVSTHELDILDTASHAAFLDSL   73 (243)
T ss_pred             cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-------CCeEEEEecCCCChHHHHHHHHHH
Confidence            467877754 4445544    3458899999998866555444444332       234667777777766555554433


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      ..++|+++.+-
T Consensus        74 ~~~~d~vv~~a   84 (243)
T PRK07102         74 PALPDIVLIAV   84 (243)
T ss_pred             hhcCCEEEECC
Confidence            34679988765

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.24  E-value=0.55  Score=35.65  Aligned_cols=84  Identities=14%  Similarity=0.234  Sum_probs=54.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|++.|+   ++..+++.|.+|++++.+++.++.+...+...+        .++.....|..+.+....+..
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~   78 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--------GKVVPVCCDVSQHQQVTSMLD   78 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------CeEEEEEccCCCHHHHHHHHH
Confidence            367899999987664   233345568999999998877666655554432        235566777777655544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+.-+
T Consensus        79 ~~~~~~g~id~lv~~ag~   96 (253)
T PRK05867         79 QVTAELGGIDIAVCNAGI   96 (253)
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            1   23578999987654

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.86  Score=34.72  Aligned_cols=83  Identities=13%  Similarity=0.251  Sum_probs=54.3

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=.|++.|+   ++..+++.|++|++++.+++.++.+...+....       ..++.....|..+.+.+..+...
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~D~~~~~~~~~~~~~   78 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-------GVDVAVHALDLSSPEAREQLAAE   78 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-------CCceEEEEecCCCHHHHHHHHHH
Confidence            56789999986653   222345568899999998876666555554331       12455677788776665555433


Q ss_pred             CCCCCcEEEEcccc
Q 030274          151 YPGGFDLILGADIY  164 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~  164 (180)
                       .++.|+++.+.-.
T Consensus        79 -~g~id~lv~~ag~   91 (259)
T PRK06125         79 -AGDIDILVNNAGA   91 (259)
T ss_pred             -hCCCCEEEECCCC
Confidence             3579999888654

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.18  E-value=0.1  Score=35.76  Aligned_cols=44  Identities=20%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcC-ChHHHHHhhcCCeEEEecCCHH
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGV-GVTGILCSRFCREVLLTDHNEE  107 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~~~~V~~~D~~~~  107 (180)
                      .+++|+.++.   ...+|+|+|-|- --.+..|++.|..|++||+++.
T Consensus         3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~   47 (127)
T PF03686_consen    3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR   47 (127)
T ss_dssp             HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred             hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence            4677777543   334999999987 4677788888999999999986

; PDB: 2K4M_A.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.07  E-value=0.37  Score=39.54  Aligned_cols=76  Identities=21%  Similarity=0.286  Sum_probs=51.9

Q ss_pred             CeEEEeCCcC-ChHHH-HHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           76 SSILELGSGV-GVTGI-LCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        76 ~~vLdlG~G~-G~~~l-~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++||=||||. |.... .+|+.+ .+|+..|-+.+..+.+..+...           +++...+|-.+.+.+..++    
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----------~v~~~~vD~~d~~al~~li----   66 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----------KVEALQVDAADVDALVALI----   66 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----------cceeEEecccChHHHHHHH----
Confidence            4799999964 54333 345556 7999999998766666554322           3667888888876665553    


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      ..+|+||.+=+.|.
T Consensus        67 ~~~d~VIn~~p~~~   80 (389)
T COG1748          67 KDFDLVINAAPPFV   80 (389)
T ss_pred             hcCCEEEEeCCchh
Confidence            35599888877655

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.97  E-value=0.11  Score=44.27  Aligned_cols=42  Identities=24%  Similarity=0.362  Sum_probs=36.3

Q ss_pred             CCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      .++.+|+=+|||. |+.++..|+ .|++|+++|.+++.++.++.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4678999999998 999988777 48899999999988887775

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=93.97  E-value=0.13  Score=38.50  Aligned_cols=48  Identities=21%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             ecchH--HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274           55 VWPGA--MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE  106 (180)
Q Consensus        55 ~w~~~--~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~  106 (180)
                      -||..  ..+.+||.+.+   +...|-|+|||-+.++..+. .+.+|...|..+
T Consensus        54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva  103 (219)
T PF05148_consen   54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA  103 (219)
T ss_dssp             TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-
T ss_pred             cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc-cCceEEEeeccC
Confidence            68776  56788887664   45799999999998885543 345688888753

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK08862 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.57  Score=35.31  Aligned_cols=81  Identities=16%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=.|++.|+   ++..+++.|.+|+.++.+++.++.+.+.+...+        .++.....+..+.+....+...
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--------~~~~~~~~D~~~~~~~~~~~~~   75 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--------DNVYSFQLKDFSQESIRHLFDA   75 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------CCeEEEEccCCCHHHHHHHHHH
Confidence            56789999998875   344456678999999998887776665555433        1233445566655555444321


Q ss_pred             ---CCC-CCcEEEEcc
Q 030274          151 ---YPG-GFDLILGAD  162 (180)
Q Consensus       151 ---~~~-~fD~Ii~~d  162 (180)
                         ..+ +.|+++.+-
T Consensus        76 ~~~~~g~~iD~li~na   91 (227)
T PRK08862         76 IEQQFNRAPDVLVNNW   91 (227)
T ss_pred             HHHHhCCCCCEEEECC
Confidence               123 799999886

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.69  E-value=0.75  Score=34.93  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             CCCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +.+++||=.|+ +|.+|..+++    .|++|++++.++..++.+...+...+        .++.....|..+.+.+..+.
T Consensus         8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------~~~~~~~~D~~~~~~~~~~~   78 (255)
T PRK07523          8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--------LSAHALAFDVTDHDAVRAAI   78 (255)
T ss_pred             CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------ceEEEEEccCCCHHHHHHHH
Confidence            36789999986 4445555443    58899999998876665555554432        23556667777766554443


Q ss_pred             h---hCCCCCcEEEEcccc
Q 030274          149 Q---KYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~  164 (180)
                      .   ...++.|+++.+.-.
T Consensus        79 ~~~~~~~~~~d~li~~ag~   97 (255)
T PRK07523         79 DAFEAEIGPIDILVNNAGM   97 (255)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            2   123578999888754

>PRK06139 short chain dehydrogenase; Provisional

Probab=93.68  E-value=0.85  Score=36.56  Aligned_cols=83  Identities=17%  Similarity=0.272  Sum_probs=56.1

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      .+++||=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.+...|..+.+.+..+.. 
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--------~~~~~~~~Dv~d~~~v~~~~~~   77 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--------AEVLVVPTDVTDADQVKALATQ   77 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEeeCCCHHHHHHHHHH
Confidence            56789988886653   233345568999999999887777766665543        245566778887765554432 


Q ss_pred             --hCCCCCcEEEEcccc
Q 030274          150 --KYPGGFDLILGADIY  164 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~  164 (180)
                        ...+++|++|.+--+
T Consensus        78 ~~~~~g~iD~lVnnAG~   94 (330)
T PRK06139         78 AASFGGRIDVWVNNVGV   94 (330)
T ss_pred             HHHhcCCCCEEEECCCc
Confidence              123679999888643

>PRK06172 short chain dehydrogenase; Provisional

Probab=93.58  E-value=0.95  Score=34.27  Aligned_cols=82  Identities=12%  Similarity=0.142  Sum_probs=53.0

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++.|+ |..    +++.|++|+.++.+++-++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         6 ~~k~ilItGas~~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~i~~~~~   76 (253)
T PRK06172          6 SGKVALVTGGAAGI-GRATALAFAREGAKVVVADRDAAGGEETVALIREAG--------GEALFVACDVTRDAEVKALVE   76 (253)
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHH
Confidence            57789999986553 333    44568899999998876665555554432        245667777777655444322


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..+++|+|+.+--+
T Consensus        77 ~~~~~~g~id~li~~ag~   94 (253)
T PRK06172         77 QTIAAYGRLDYAFNNAGI   94 (253)
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            1   23578999987654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.53  E-value=0.21  Score=40.42  Aligned_cols=42  Identities=21%  Similarity=0.448  Sum_probs=35.7

Q ss_pred             CCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHHH
Q 030274           74 QASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n  115 (180)
                      ++.+|+=+|||. |++++.+++. | .+|+++|.+++-++.|++-
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~  212 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA  212 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence            444899999998 9999888875 4 6999999999999988873

>PRK07062 short chain dehydrogenase; Provisional

Probab=93.46  E-value=0.99  Score=34.46  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+....      ...++.....|..+.+.+..+..
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~   79 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF------PGARLLAARCDVLDEADVAAFAA   79 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC------CCceEEEEEecCCCHHHHHHHHH
Confidence            367789999987664   233344568999999998876666555544321      11245566778887765544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+--+
T Consensus        80 ~~~~~~g~id~li~~Ag~   97 (265)
T PRK07062         80 AVEARFGGVDMLVNNAGQ   97 (265)
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence            1   23578998887643

>PRK07035 short chain dehydrogenase; Provisional

Probab=93.35  E-value=1.1  Score=33.80  Aligned_cols=83  Identities=14%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++||=.|++.|+   ++..+++.|++|++++.++..++.+.+.+...+        .++.....+..+.+....+..
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   77 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--------GKAEALACHIGEMEQIDALFA   77 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEcCCCCHHHHHHHHH
Confidence            356789999987764   222344568999999998776666555554332        234456667776655443322


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|+++.+--
T Consensus        78 ~~~~~~~~id~li~~ag   94 (252)
T PRK07035         78 HIRERHGRLDILVNNAA   94 (252)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            1   2346899987664

>PRK05876 short chain dehydrogenase; Provisional

Probab=93.28  E-value=1  Score=34.88  Aligned_cols=84  Identities=13%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +.++++|=.|++.|+   ++..+++.|++|+.++.++..++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------~~~~~~~~Dv~d~~~v~~~~~   75 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--------FDVHGVMCDVRHREEVTHLAD   75 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEeCCCCCHHHHHHHHH
Confidence            467789988887664   223344568999999998766665544444332        235566777777665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        76 ~~~~~~g~id~li~nAg~   93 (275)
T PRK05876         76 EAFRLLGHVDVVFSNAGI   93 (275)
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            1   23578998887643

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.24  E-value=0.7  Score=35.06  Aligned_cols=83  Identities=14%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++++|=.|++.|+ |..    +++.|++|++++.+++.++.+...++..+        .++.....|..+.+.+..+.
T Consensus         9 ~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~   79 (256)
T PRK06124          9 LAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--------GAAEALAFDIADEEAVAAAF   79 (256)
T ss_pred             CCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHH
Confidence            367889989976553 443    44458999999998876666655555432        23556777877765544433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|.++.+--.
T Consensus        80 ~~~~~~~~~id~vi~~ag~   98 (256)
T PRK06124         80 ARIDAEHGRLDILVNNVGA   98 (256)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            21   23478999987653

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.23  E-value=0.2  Score=38.59  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=31.7

Q ss_pred             CCeEEEeCCcCChHHHHHhhc----------CCeEEEecCCHHHHHHHHHHHHH
Q 030274           75 ASSILELGSGVGVTGILCSRF----------CREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~----------~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ..+|+|+|+|.|.++.-+.+.          ..+++.+|.|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            369999999999887755442          14899999999887777777654

; PDB: 4F3N_A 1ZKD_B.

>PRK06949 short chain dehydrogenase; Provisional

Probab=93.21  E-value=1.4  Score=33.29  Aligned_cols=83  Identities=20%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++. .+|..++    +.|.+|++++.+++.++.+...+...+        .++.+...|..+.+.+....
T Consensus         7 ~~~k~ilItGasg-~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~   77 (258)
T PRK06949          7 LEGKVALVTGASS-GLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--------GAAHVVSLDVTDYQSIKAAV   77 (258)
T ss_pred             CCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHH
Confidence            3677899998544 4455444    457899999998877666655544322        23556777777665444432


Q ss_pred             h---hCCCCCcEEEEcccc
Q 030274          149 Q---KYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~  164 (180)
                      .   ...+++|+|+.+.-.
T Consensus        78 ~~~~~~~~~~d~li~~ag~   96 (258)
T PRK06949         78 AHAETEAGTIDILVNNSGV   96 (258)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            2   123578999887754

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.14  E-value=0.15  Score=41.23  Aligned_cols=85  Identities=15%  Similarity=0.258  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ..+..++|||+|.|.|....++-..   -..++.++.|+ ++...-..+..|-           .....+|...+.....
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv-----------~t~~td~r~s~vt~dR  177 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENV-----------STEKTDWRASDVTEDR  177 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhc-----------ccccCCCCCCccchhc
Confidence            4567788999999998644333332   25778888876 4444444555552           2334667666533332


Q ss_pred             Hhh-CCCCCcEEEEccccccC
Q 030274          148 IQK-YPGGFDLILGADIYILY  167 (180)
Q Consensus       148 ~~~-~~~~fD~Ii~~d~~y~~  167 (180)
                      ++. ....|++++..+=+-+.
T Consensus       178 l~lp~ad~ytl~i~~~eLl~d  198 (484)
T COG5459         178 LSLPAADLYTLAIVLDELLPD  198 (484)
T ss_pred             cCCCccceeehhhhhhhhccc
Confidence            222 23478888888766553

>PRK05854 short chain dehydrogenase; Provisional

Probab=93.14  E-value=1.6  Score=34.50  Aligned_cols=86  Identities=15%  Similarity=0.127  Sum_probs=55.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=.|++.|+   ++..+++.|++|+.+.-+.+-.+.+.+.+....      ...++.+...|..+.+....+..
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~------~~~~v~~~~~Dl~d~~sv~~~~~   85 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV------PDAKLSLRALDLSSLASVAALGE   85 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CCCceEEEEecCCCHHHHHHHHH
Confidence            367789988987664   233345568999999988776665555554331      12346677888887765554432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|++|.|--+
T Consensus        86 ~~~~~~~~iD~li~nAG~  103 (313)
T PRK05854         86 QLRAEGRPIHLLINNAGV  103 (313)
T ss_pred             HHHHhCCCccEEEECCcc
Confidence               223578999987644

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=93.11  E-value=0.13  Score=37.87  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=28.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCC
Q 030274           73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHN  105 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~  105 (180)
                      .++.+|||+||-.|.++..+.+.   ...|.++|+-
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            47789999999999999988775   3689999974

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=93.10  E-value=1  Score=34.48  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=.|++.|+   ++..+++.|++|+.++.++..++.+..++...+        .++.....|..+.+.+..+...
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~   80 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--------IEAHGYVCDVTDEDGVQAMVSQ   80 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHHH
Confidence            67789999988764   233345568999999988876666666655432        2355677787776655444322


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..+++|+++.+--+
T Consensus        81 ~~~~~~~id~li~~ag~   97 (265)
T PRK07097         81 IEKEVGVIDILVNNAGI   97 (265)
T ss_pred             HHHhCCCCCEEEECCCC
Confidence               23578999988754

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.08  E-value=0.34  Score=36.45  Aligned_cols=86  Identities=13%  Similarity=0.079  Sum_probs=52.3

Q ss_pred             cchHHHHHHHHhhCCCCCC----CCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           56 WPGAMLMNDYLSKNPDVLQ----ASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~----~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      -+++..+.+||.......+    ..++||+||=+....+.  ..+ ..|+.+|.++.          .            
T Consensus        29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------~------------   84 (219)
T PF11968_consen   29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------H------------   84 (219)
T ss_pred             CchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------C------------
Confidence            4588999999987543222    25999999975543322  222 46999999762          1            


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc-ccCCc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY-ILYNR  169 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~~~~  169 (180)
                      -.+.+-||-...-.    ....++||+|.+|=|+ |-+..
T Consensus        85 ~~I~qqDFm~rplp----~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   85 PGILQQDFMERPLP----KNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             CCceeeccccCCCC----CCcccceeEEEEEEEEeeCCCH
Confidence            11445555443210    0135689999999886 33433

>PRK07063 short chain dehydrogenase; Provisional

Probab=93.07  E-value=1.5  Score=33.37  Aligned_cols=85  Identities=13%  Similarity=0.155  Sum_probs=54.1

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=.|++.|+   ++..+++.|++|+.++.+++.++.+.+.+...+      ...++.....|..+.+.+..+...
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~   79 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV------AGARVLAVPADVTDAASVAAAVAA   79 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc------CCceEEEEEccCCCHHHHHHHHHH
Confidence            57789999986653   223344568999999998877666665554421      123456677777776555444321


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..++.|++|.+--+
T Consensus        80 ~~~~~g~id~li~~ag~   96 (260)
T PRK07063         80 AEEAFGPLDVLVNNAGI   96 (260)
T ss_pred             HHHHhCCCcEEEECCCc
Confidence               23578999887643

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=93.02  E-value=0.57  Score=36.65  Aligned_cols=60  Identities=18%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ..|...+... ....+..|||--+|+|..++++.+.+..+++.|++++-++.+.+.+....
T Consensus       209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~  268 (302)
T COG0863         209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL  268 (302)
T ss_pred             HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence            4444444443 23478899999999999999999999999999999999999998887764

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.99  E-value=0.063  Score=44.89  Aligned_cols=47  Identities=23%  Similarity=0.374  Sum_probs=42.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ++.+|||.=|+||+-+|..|+.  + .+|++-|.++.+++..++|++.|+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~  158 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG  158 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC
Confidence            4568999999999999999885  2 689999999999999999999996

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.96  E-value=1.7  Score=32.84  Aligned_cols=82  Identities=17%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++||=.|++.|+ |..    +++.|++|+.++.++.-++.+...+...+        .++.....|..+.+.+.....
T Consensus         4 ~~k~vlItGa~~~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   74 (258)
T PRK07890          4 KGKVVVVSGVGPGL-GRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--------RRALAVPTDITDEDQCANLVA   74 (258)
T ss_pred             CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--------CceEEEecCCCCHHHHHHHHH
Confidence            56789988876653 443    44568999999998876655554444322        235567777776655444332


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+|+.+.-.
T Consensus        75 ~~~~~~g~~d~vi~~ag~   92 (258)
T PRK07890         75 LALERFGRVDALVNNAFR   92 (258)
T ss_pred             HHHHHcCCccEEEECCcc
Confidence            1   22578999888754

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=92.82  E-value=1.2  Score=33.75  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=52.4

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      .++++|=.|++.|+   ++..+++.|++|+.++.++..++.+...+...+        .++.....|..+.+.+..+.. 
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~~~~~~~~   79 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--------IKAHAAPFNVTHKQEVEAAIEH   79 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--------CeEEEEecCCCCHHHHHHHHHH
Confidence            56789999976653   222344568999999998766555554444322        234556677777665554432 


Q ss_pred             --hCCCCCcEEEEcccc
Q 030274          150 --KYPGGFDLILGADIY  164 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~  164 (180)
                        ...+++|+++.+--.
T Consensus        80 ~~~~~~~id~vi~~ag~   96 (254)
T PRK08085         80 IEKDIGPIDVLINNAGI   96 (254)
T ss_pred             HHHhcCCCCEEEECCCc
Confidence              123578999988754

>PRK08589 short chain dehydrogenase; Validated

Probab=92.78  E-value=1.3  Score=34.09  Aligned_cols=82  Identities=13%  Similarity=0.180  Sum_probs=51.4

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=.|++.|+   ++..+++.|++|++++.+ ..++.+.+.+...+        .++.....|..+.+.+..+...
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~   75 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--------GKAKAYHVDISDEQQVKDFASE   75 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--------CeEEEEEeecCCHHHHHHHHHH
Confidence            56789988887664   233345568999999988 44444444443322        2356677788777655444322


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..++.|++|.+--+
T Consensus        76 ~~~~~g~id~li~~Ag~   92 (272)
T PRK08589         76 IKEQFGRVDVLFNNAGV   92 (272)
T ss_pred             HHHHcCCcCEEEECCCC
Confidence               23578999988644

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=92.71  E-value=0.29  Score=40.31  Aligned_cols=79  Identities=22%  Similarity=0.304  Sum_probs=52.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHhh-c--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSR-F--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~-~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      -++.||||++|-.|-=+..+|. +  -..|++.|.+..-++.++.|+...|..       +..+.+++-.....     .
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-------ntiv~n~D~~ef~~-----~  307 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-------NTIVSNYDGREFPE-----K  307 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-------ceEEEccCcccccc-----c
Confidence            4788999999999754444443 2  258999999999999999999998722       23333333322110     0


Q ss_pred             hCCCCCcEEEEccc
Q 030274          150 KYPGGFDLILGADI  163 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~  163 (180)
                      ..+++||-|+..-|
T Consensus       308 ~~~~~fDRVLLDAP  321 (460)
T KOG1122|consen  308 EFPGSFDRVLLDAP  321 (460)
T ss_pred             ccCcccceeeecCC
Confidence            12448999886554

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.57  E-value=1.7  Score=32.94  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=52.5

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=.|++.|+   ++..+++.|++|++++.++..++.+...+...+        .++.....|..+.+....+...
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~   76 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--------GEAVALAGDVRDEAYAKALVAL   76 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHHH
Confidence            56788888876653   223344568999999998876666655554432        2355666777766554443321


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..++.|+++.+--+
T Consensus        77 ~~~~~~~id~li~~ag~   93 (254)
T PRK07478         77 AVERFGGLDIAFNNAGT   93 (254)
T ss_pred             HHHhcCCCCEEEECCCC
Confidence               23478998877643

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.45  E-value=1.8  Score=32.92  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|+ +|.+|..+++    .|.+|+.++.++.-++.+...+...+        .++.....|..+.+.+..+..
T Consensus        11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------~~~~~~~~Dl~d~~~i~~~~~   81 (259)
T PRK08213         11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--------IDALWIAADVADEADIERLAE   81 (259)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEccCCCHHHHHHHHH
Confidence            6778999985 4555665554    48899999998876666655554432        235566777777665543322


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|.|+.+...
T Consensus        82 ~~~~~~~~id~vi~~ag~   99 (259)
T PRK08213         82 ETLERFGHVDILVNNAGA   99 (259)
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            1   22478999888653

>PRK09242 tropinone reductase; Provisional

Probab=92.44  E-value=2  Score=32.63  Aligned_cols=85  Identities=9%  Similarity=0.169  Sum_probs=53.5

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      +++++|=.|++.|+   ++..+++.|++|++++.+++.++....++....      ...++.....|..+.+....+.. 
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~   81 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF------PEREVHGLAADVSDDEDRRAILDW   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC------CCCeEEEEECCCCCHHHHHHHHHH
Confidence            67789999986653   222344568999999998877666666654431      11245566777776655444332 


Q ss_pred             --hCCCCCcEEEEcccc
Q 030274          150 --KYPGGFDLILGADIY  164 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~  164 (180)
                        ...+++|+|+.+--.
T Consensus        82 ~~~~~g~id~li~~ag~   98 (257)
T PRK09242         82 VEDHWDGLHILVNNAGG   98 (257)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence              123578998877743

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=92.41  E-value=0.4  Score=37.43  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=34.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~  113 (180)
                      ...+||--|||.|.++.-+|+.|..|.+.|.|--|+-..+
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN   95 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence            4569999999999999999999999999999877754433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=92.33  E-value=1.4  Score=32.99  Aligned_cols=84  Identities=11%  Similarity=0.087  Sum_probs=52.5

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++||=.|++ |.+|..++    +.|.+|++++-++..+..+...+...+        .++.....++.+.+.+.....
T Consensus         5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~~~~~~~   75 (251)
T PRK12826          5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--------GKARARQVDVRDRAALKAAVA   75 (251)
T ss_pred             CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence            56789988864 44555544    458899999988765555555444332        235667778877665544332


Q ss_pred             h---CCCCCcEEEEcccccc
Q 030274          150 K---YPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y~  166 (180)
                      .   ..+++|+|+.+...+.
T Consensus        76 ~~~~~~~~~d~vi~~ag~~~   95 (251)
T PRK12826         76 AGVEDFGRLDILVANAGIFP   95 (251)
T ss_pred             HHHHHhCCCCEEEECCCCCC
Confidence            1   1247899988875443

>PRK08267 short chain dehydrogenase; Provisional

Probab=92.32  E-value=1.2  Score=33.92  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=49.7

Q ss_pred             CeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           76 SSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      +++|=.|++.| +|..    +++.|.+|++++.+++.++.+...+.  +        .++.+...|..+.+.+...... 
T Consensus         2 k~vlItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--------~~~~~~~~D~~~~~~v~~~~~~~   70 (260)
T PRK08267          2 KSIFITGAASG-IGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--------GNAWTGALDVTDRAAWDAALADF   70 (260)
T ss_pred             cEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--------CceEEEEecCCCHHHHHHHHHHH
Confidence            36777887654 3444    44458999999988876666554433  1        2366778888877655544322 


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..+++|+++.+--+
T Consensus        71 ~~~~~~~id~vi~~ag~   87 (260)
T PRK08267         71 AAATGGRLDVLFNNAGI   87 (260)
T ss_pred             HHHcCCCCCEEEECCCC
Confidence               14578998877643

>PRK06720 hypothetical protein; Provisional

Probab=92.28  E-value=2.7  Score=30.26  Aligned_cols=85  Identities=14%  Similarity=0.228  Sum_probs=52.1

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      +++.+|=.|++.|+   ++..+++.|++|+.+|.+...++.+.+.+...+        .+......+..+.+....+.. 
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~v~~~v~~   86 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--------GEALFVSYDMEKQGDWQRVISI   86 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHHH
Confidence            56788888887664   333345568999999988766655444443222        234456677766554443321 


Q ss_pred             --hCCCCCcEEEEcccccc
Q 030274          150 --KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~y~  166 (180)
                        ...++.|+++.|--++.
T Consensus        87 ~~~~~G~iDilVnnAG~~~  105 (169)
T PRK06720         87 TLNAFSRIDMLFQNAGLYK  105 (169)
T ss_pred             HHHHcCCCCEEEECCCcCC
Confidence              12357899998865443

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.16  E-value=1.7  Score=32.71  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=49.2

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++.| +|..+    ++.|.+|+.++.++..++.+.+.+...+        .++.....|..+.+.......
T Consensus         4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   74 (253)
T PRK08217          4 KDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--------TEVRGYAANVTDEEDVEATFA   74 (253)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHH
Confidence            5678998887444 34443    3457899999998766655555444332        234455666665544433322


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..+++|+|+.+.-.
T Consensus        75 ~~~~~~~~id~vi~~ag~   92 (253)
T PRK08217         75 QIAEDFGQLNGLINNAGI   92 (253)
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            2   12478999987643

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.12  E-value=1.4  Score=33.69  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=49.4

Q ss_pred             CCCCeEEEeCCcCC-hHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGVG-VTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~G-~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=.|+++| -+|..    +++.|++|+.++.++...+.+++-.+..+         .......|..+.+....+
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---------~~~~~~~D~~~~~~v~~~   78 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---------APIFLPLDVREPGQLEAV   78 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---------cceEEecCcCCHHHHHHH
Confidence            36789999998752 44444    44568999999987654333332222211         123456777776655544


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|+++.|--+
T Consensus        79 ~~~~~~~~g~ld~lv~nAg~   98 (258)
T PRK07533         79 FARIAEEWGRLDFLLHSIAF   98 (258)
T ss_pred             HHHHHHHcCCCCEEEEcCcc
Confidence            322   23578999988643

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.10  E-value=2  Score=32.89  Aligned_cols=81  Identities=9%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|++.| +|..    +++.|++|++++.+++.++.....+...+        .++.+...|..+.+.+..+.
T Consensus         7 ~~~k~ilItGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~i~~~~   77 (264)
T PRK07576          7 FAGKNVVVVGGTSG-INLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--------PEGLGVSADVRDYAAVEAAF   77 (264)
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------CceEEEECCCCCHHHHHHHH
Confidence            36778998886444 3443    44468899999988765554444443322        23456677777665554433


Q ss_pred             hh---CCCCCcEEEEcc
Q 030274          149 QK---YPGGFDLILGAD  162 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d  162 (180)
                      ..   ..+++|++|.+-
T Consensus        78 ~~~~~~~~~iD~vi~~a   94 (264)
T PRK07576         78 AQIADEFGPIDVLVSGA   94 (264)
T ss_pred             HHHHHHcCCCCEEEECC
Confidence            22   234789998765

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.04  E-value=1.1  Score=33.42  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=25.0

Q ss_pred             CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCC
Q 030274           74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHN  105 (180)
Q Consensus        74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~  105 (180)
                      .+.+||=+|||. | .++..+++.| .+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            667999999985 5 4555677777 589999977

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07791 short chain dehydrogenase; Provisional

Probab=92.02  E-value=1.8  Score=33.69  Aligned_cols=85  Identities=13%  Similarity=0.212  Sum_probs=52.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH---------HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE---------EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+++++|=.|++.|+   ++..+++.|++|+.++.+.         ..++.+.+.+...+        .++.....|..+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~~   75 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--------GEAVANGDDIAD   75 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--------CceEEEeCCCCC
Confidence            367899999988774   2333555689999998754         43444433333322        235566777777


Q ss_pred             CchhhHHHhh---CCCCCcEEEEccccc
Q 030274          141 SDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       141 ~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      .+....+...   ..++.|+++.|--+.
T Consensus        76 ~~~v~~~~~~~~~~~g~id~lv~nAG~~  103 (286)
T PRK07791         76 WDGAANLVDAAVETFGGLDVLVNNAGIL  103 (286)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            6655444322   235789999876543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=91.94  E-value=2.1  Score=34.00  Aligned_cols=71  Identities=8%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHH-HhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGIL-CSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~-la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      |.+-+.......++...+|.==|.|.-+-. |.+++  .+++++|.++.+++.+++.+...+        .++.+.+-.+
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--------~r~~~v~~~F   82 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--------GRVTLVHGNF   82 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--------CcEEEEeCcH
Confidence            444444445555678999988888655554 44553  689999999999999999987764        3455555444


Q ss_pred             CC
Q 030274          139 GN  140 (180)
Q Consensus       139 ~~  140 (180)
                      .+
T Consensus        83 ~~   84 (314)
T COG0275          83 AN   84 (314)
T ss_pred             HH
Confidence            43

>PRK06194 hypothetical protein; Provisional

Probab=91.90  E-value=1.8  Score=33.39  Aligned_cols=82  Identities=12%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++.| +|..+    ++.|++|+.+|.+.+.++.....+...+        .++.+...|..+.+.+..+..
T Consensus         5 ~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~   75 (287)
T PRK06194          5 AGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--------AEVLGVRTDVSDAAQVEALAD   75 (287)
T ss_pred             CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence            5678887776544 44444    4458899999998766555444433322        235566777776655544322


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|+|+.+--+
T Consensus        76 ~~~~~~g~id~vi~~Ag~   93 (287)
T PRK06194         76 AALERFGAVHLLFNNAGV   93 (287)
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence               123568999887754

>PRK05866 short chain dehydrogenase; Provisional

Probab=91.89  E-value=2.5  Score=33.10  Aligned_cols=83  Identities=18%  Similarity=0.317  Sum_probs=53.0

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++.|+ |..    +++.|.+|++++.+.+.++.+.+.+...+        .++.+...|..+.+.+..+.
T Consensus        38 ~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--------~~~~~~~~Dl~d~~~v~~~~  108 (293)
T PRK05866         38 LTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--------GDAMAVPCDLSDLDAVDALV  108 (293)
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHH
Confidence            356789999986654 443    44558999999998877666655554322        23556677777665544443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|+++.+--.
T Consensus       109 ~~~~~~~g~id~li~~AG~  127 (293)
T PRK05866        109 ADVEKRIGGVDILINNAGR  127 (293)
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            21   23478999987644

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=91.87  E-value=0.096  Score=34.43  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=17.5

Q ss_pred             EEeCCcCChHHHHHhhc---C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh-hHHHhhCC
Q 030274           79 LELGSGVGVTGILCSRF---C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI-NKIIQKYP  152 (180)
Q Consensus        79 LdlG~G~G~~~l~la~~---~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  152 (180)
                      ||+|+..|..++.+++.   .  .+++++|..+. .+..+++++..+.      ..++.+.   .++..+. ..+   ..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~------~~~~~~~---~g~s~~~l~~~---~~   67 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL------SDRVEFI---QGDSPDFLPSL---PD   67 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-------BTEEEE---ES-THHHHHHH---HH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC------CCeEEEE---EcCcHHHHHHc---CC
Confidence            69999999888877753   2  37999999885 3334444443321      1123333   3333222 222   14


Q ss_pred             CCCcEEEEcc
Q 030274          153 GGFDLILGAD  162 (180)
Q Consensus       153 ~~fD~Ii~~d  162 (180)
                      +++|+|+..-
T Consensus        68 ~~~dli~iDg   77 (106)
T PF13578_consen   68 GPIDLIFIDG   77 (106)
T ss_dssp             --EEEEEEES
T ss_pred             CCEEEEEECC
Confidence            6899987654

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=91.85  E-value=1.5  Score=33.34  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=48.9

Q ss_pred             eEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh---
Q 030274           77 SILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK---  150 (180)
Q Consensus        77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  150 (180)
                      ++|=.|++.|+   ++..+++.|++|+.++.++..++.+...+...+         ++.....|..+.+....+...   
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------~~~~~~~Dv~d~~~~~~~~~~~~~   72 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---------EVYAVKADLSDKDDLKNLVKEAWE   72 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---------CceEEEcCCCCHHHHHHHHHHHHH
Confidence            57778876653   233345568999999998876666655554321         345667777766555444321   


Q ss_pred             CCCCCcEEEEccc
Q 030274          151 YPGGFDLILGADI  163 (180)
Q Consensus       151 ~~~~fD~Ii~~d~  163 (180)
                      ..++.|++|.+--
T Consensus        73 ~~g~id~li~naG   85 (259)
T PRK08340         73 LLGGIDALVWNAG   85 (259)
T ss_pred             hcCCCCEEEECCC
Confidence            2357899887753

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=91.77  E-value=2.1  Score=32.21  Aligned_cols=82  Identities=13%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++. .+|..++    +.|.+|++++.+....+.+...+...+        .++.+...+..+.+.+..+..
T Consensus         2 ~~~~ilItGas~-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~   72 (250)
T TIGR03206         2 KDKTAIVTGGGG-GIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--------GNAQAFACDITDRDSVDTAVA   72 (250)
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence            467888888754 4444444    457899999998876666655554432        245567777776655544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+-..
T Consensus        73 ~~~~~~~~~d~vi~~ag~   90 (250)
T TIGR03206        73 AAEQALGPVDVLVNNAGW   90 (250)
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   12468988877743

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07814 short chain dehydrogenase; Provisional

Probab=91.76  E-value=2.5  Score=32.33  Aligned_cols=82  Identities=15%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|++. .+|..++    +.|++|++++.+++.++.+.+.+...+        .++.+...+..+.+.+....
T Consensus         8 ~~~~~vlItGasg-gIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~   78 (263)
T PRK07814          8 LDDQVAVVTGAGR-GLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--------RRAHVVAADLAHPEATAGLA   78 (263)
T ss_pred             CCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHH
Confidence            3577899999654 4455444    458999999998876665555443322        23556677777766544332


Q ss_pred             hh---CCCCCcEEEEccc
Q 030274          149 QK---YPGGFDLILGADI  163 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~  163 (180)
                      ..   ..+++|+|+.+--
T Consensus        79 ~~~~~~~~~id~vi~~Ag   96 (263)
T PRK07814         79 GQAVEAFGRLDIVVNNVG   96 (263)
T ss_pred             HHHHHHcCCCCEEEECCC
Confidence            21   1247899987654

>PRK08643 acetoin reductase; Validated

Probab=91.75  E-value=1.9  Score=32.70  Aligned_cols=81  Identities=17%  Similarity=0.232  Sum_probs=50.7

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|=.|+..| +|..    +++.|.+|++++.++...+.+...+...+        .++.....|..+.+.+......
T Consensus         2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~   72 (256)
T PRK08643          2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--------GKAIAVKADVSDRDQVFAAVRQ   72 (256)
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHHH
Confidence            356777776554 4443    44458899999998876666665554432        2355667777777655443321


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..++.|+++.+--+
T Consensus        73 ~~~~~~~id~vi~~ag~   89 (256)
T PRK08643         73 VVDTFGDLNVVVNNAGV   89 (256)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence               23578998887643

>PRK05872 short chain dehydrogenase; Provisional

Probab=91.61  E-value=1.7  Score=33.97  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|++.|+   ++..+++.|++|+.++.+++.++.+.+.+..         ...+.....|..+.+.......
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---------~~~~~~~~~Dv~d~~~v~~~~~   77 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---------DDRVLTVVADVTDLAAMQAAAE   77 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---------CCcEEEEEecCCCHHHHHHHHH
Confidence            367889988876653   3333445689999999988766554443321         1234445577777665544332


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        78 ~~~~~~g~id~vI~nAG~~   96 (296)
T PRK05872         78 EAVERFGGIDVVVANAGIA   96 (296)
T ss_pred             HHHHHcCCCCEEEECCCcC
Confidence            1   235799999887543

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.58  E-value=0.43  Score=32.28  Aligned_cols=64  Identities=23%  Similarity=0.380  Sum_probs=42.2

Q ss_pred             cCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC-CCCcEEEEc
Q 030274           84 GVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP-GGFDLILGA  161 (180)
Q Consensus        84 G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~Ii~~  161 (180)
                      |.|+.++.+|+. |.+|+++|.++.-++.+++.    +          . ...++..+.+..+.+..... ..+|+|+-+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----G----------a-~~~~~~~~~~~~~~i~~~~~~~~~d~vid~   65 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----G----------A-DHVIDYSDDDFVEQIRELTGGRGVDVVIDC   65 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----------E-SEEEETTTSSHHHHHHHHTTTSSEEEEEES
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----c----------c-cccccccccccccccccccccccceEEEEe
Confidence            568888888874 79999999999888877653    2          1 13455655543333333334 379988765


Q ss_pred             c
Q 030274          162 D  162 (180)
Q Consensus       162 d  162 (180)
                      -
T Consensus        66 ~   66 (130)
T PF00107_consen   66 V   66 (130)
T ss_dssp             S
T ss_pred             c
Confidence            4

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK07109 short chain dehydrogenase; Provisional

Probab=91.55  E-value=2.4  Score=33.92  Aligned_cols=84  Identities=17%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++||=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+.....
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--------~~~~~v~~Dv~d~~~v~~~~~   77 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--------GEALAVVADVADAEAVQAAAD   77 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--------CcEEEEEecCCCHHHHHHHHH
Confidence            356788988876653   222345568999999998877776666665433        245566778777665554432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...+++|++|.+--+
T Consensus        78 ~~~~~~g~iD~lInnAg~   95 (334)
T PRK07109         78 RAEEELGPIDTWVNNAMV   95 (334)
T ss_pred             HHHHHCCCCCEEEECCCc
Confidence               123578999877653

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.53  E-value=4  Score=30.40  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++||=.|++.| +|..++    +.|++|++++.+++....+.+.+...+         ++.....++.+.+.......
T Consensus         4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~Dl~~~~~~~~~~~   73 (238)
T PRK05786          4 KGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---------NIHYVVGDVSSTESARNVIE   73 (238)
T ss_pred             CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---------CeEEEECCCCCHHHHHHHHH
Confidence            5678999998654 344443    458899999998876555444333221         35567778887765544332


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..+..|.++.+-..+
T Consensus        74 ~~~~~~~~id~ii~~ag~~   92 (238)
T PRK05786         74 KAAKVLNAIDGLVVTVGGY   92 (238)
T ss_pred             HHHHHhCCCCEEEEcCCCc
Confidence            1   124678888776544

>PRK07904 short chain dehydrogenase; Provisional

Probab=91.50  E-value=2  Score=32.82  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=50.3

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcC-CeEEEecCCHHH-HHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGILCS----RFC-REVLLTDHNEEV-LKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~-~~V~~~D~~~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++||=.|++.|+ |..++    +.| .+|++++.+++. ++.+.+.++..+       ..++.+...|..+.+.....
T Consensus         7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-------~~~v~~~~~D~~~~~~~~~~   78 (253)
T PRK07904          7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-------ASSVEVIDFDALDTDSHPKV   78 (253)
T ss_pred             CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-------CCceEEEEecCCChHHHHHH
Confidence            45689999996654 44443    344 799999987653 555544454432       12466778888776544333


Q ss_pred             Hhh--CCCCCcEEEEcccc
Q 030274          148 IQK--YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~--~~~~fD~Ii~~d~~  164 (180)
                      ...  ..+..|+++.+--.
T Consensus        79 ~~~~~~~g~id~li~~ag~   97 (253)
T PRK07904         79 IDAAFAGGDVDVAIVAFGL   97 (253)
T ss_pred             HHHHHhcCCCCEEEEeeec
Confidence            221  12579988865433

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.50  E-value=2  Score=32.13  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|+ +|.+|..++    +.|.+|++++.++...+.....+...+        .++.+...|..+.+.+...+.
T Consensus         6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   76 (239)
T PRK07666          6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--------VKVVIATADVSDYEEVTAAIE   76 (239)
T ss_pred             CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------CeEEEEECCCCCHHHHHHHHH
Confidence            4567888886 555666554    358899999998765555444443322        235556666666555444332


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..+..|+|+.+-.
T Consensus        77 ~~~~~~~~id~vi~~ag   93 (239)
T PRK07666         77 QLKNELGSIDILINNAG   93 (239)
T ss_pred             HHHHHcCCccEEEEcCc
Confidence            1   1246899888764

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.43  E-value=2.4  Score=32.26  Aligned_cols=83  Identities=13%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|++.|+   ++..+++.|++|++++.+..  +.+.+.++..+        .++.....|..+.+....+..
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   75 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--------RKFHFITADLIQQKDIDSIVS   75 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--------CeEEEEEeCCCCHHHHHHHHH
Confidence            367899999987764   33334556899999887532  22233333222        245667788887766555433


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+++.+.-+.
T Consensus        76 ~~~~~~g~iD~lv~~ag~~   94 (251)
T PRK12481         76 QAVEVMGHIDILINNAGII   94 (251)
T ss_pred             HHHHHcCCCCEEEECCCcC
Confidence            2   235799999876543

>PRK08303 short chain dehydrogenase; Provisional

Probab=91.41  E-value=2.5  Score=33.38  Aligned_cols=82  Identities=12%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH----------HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE----------EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~----------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      .+++++|=.|++.|+   ++..+++.|++|++++.+.          +.++.+.+.+...+        .++.....|..
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~   77 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--------GRGIAVQVDHL   77 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--------CceEEEEcCCC
Confidence            467899999987764   2333455689999998763          23333333333322        23445667777


Q ss_pred             CCchhhHHHhh---CCCCCcEEEEcc
Q 030274          140 NSDQINKIIQK---YPGGFDLILGAD  162 (180)
Q Consensus       140 ~~~~~~~~~~~---~~~~fD~Ii~~d  162 (180)
                      +.+....+...   ..++.|++|.|-
T Consensus        78 ~~~~v~~~~~~~~~~~g~iDilVnnA  103 (305)
T PRK08303         78 VPEQVRALVERIDREQGRLDILVNDI  103 (305)
T ss_pred             CHHHHHHHHHHHHHHcCCccEEEECC
Confidence            76655544332   235789998875

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=91.40  E-value=2.7  Score=33.11  Aligned_cols=44  Identities=14%  Similarity=0.288  Sum_probs=26.4

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChH---HHHHhhcCC-eEEEecCCH
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVT---GILCSRFCR-EVLLTDHNE  106 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~---~l~la~~~~-~V~~~D~~~  106 (180)
                      +...|.+.....+++++|=+|+| |..   +..+++.|. +|+.++.++
T Consensus       113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            33344333223467899999997 532   222445675 599999875

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.37  E-value=0.22  Score=38.58  Aligned_cols=45  Identities=24%  Similarity=0.469  Sum_probs=30.1

Q ss_pred             CCCCCeEEEeCCcCChHHHHHh-hcCCeEEEecCCHHHHHHHHHHH
Q 030274           72 VLQASSILELGSGVGVTGILCS-RFCREVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~  116 (180)
                      ..++.++||+|||.-+.-+..| +...+++++|+.+.-.+.+++=+
T Consensus        54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl   99 (256)
T PF01234_consen   54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWL   99 (256)
T ss_dssp             SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence            3467799999999976554444 45679999999997776655443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.32  E-value=2.9  Score=31.78  Aligned_cols=83  Identities=12%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++||=.|++.|+   ++..+++.|++|+.++.+. -.+.+.+.+...+        .++.....|..+.+....+..
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~i~~~~~   83 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG--------RKVTFVQVDLTKPESAEKVVK   83 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHH
Confidence            367899999997764   2223455689999998873 3333333333221        235566777777665444332


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..+..|+++.+.-.
T Consensus        84 ~~~~~~g~id~li~~ag~  101 (258)
T PRK06935         84 EALEEFGKIDILVNNAGT  101 (258)
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   23478998887643

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=91.31  E-value=0.69  Score=37.22  Aligned_cols=42  Identities=7%  Similarity=0.037  Sum_probs=32.8

Q ss_pred             CeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274           76 SSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ...+|+|+|+|.+.-.+...-.+|-+++.+...+..++.++.
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~  220 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA  220 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc
Confidence            689999999997776665565678899988877777766654

>PRK07677 short chain dehydrogenase; Provisional

Probab=91.31  E-value=2.3  Score=32.16  Aligned_cols=81  Identities=16%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             CCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           75 ASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      ++++|=.|++.|+   ++..+++.|.+|++++.++..++.+...+...+        .++.....|..+.+....+... 
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~   72 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--------GQVLTVQMDVRNPEDVQKMVEQI   72 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHHHHH
Confidence            3578888886653   222344568999999988766665554444321        2455667777766544443221 


Q ss_pred             --CCCCCcEEEEccc
Q 030274          151 --YPGGFDLILGADI  163 (180)
Q Consensus       151 --~~~~fD~Ii~~d~  163 (180)
                        ..++.|+||.+--
T Consensus        73 ~~~~~~id~lI~~ag   87 (252)
T PRK07677         73 DEKFGRIDALINNAA   87 (252)
T ss_pred             HHHhCCccEEEECCC
Confidence              2247899987753

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=91.29  E-value=3.1  Score=32.46  Aligned_cols=83  Identities=17%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=-|+-.|+   ++-.+|+.|.+|+.+--+.+-++.+.+.++...       ...+.+...|..+.+....+...
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-------~v~v~vi~~DLs~~~~~~~l~~~   77 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-------GVEVEVIPADLSDPEALERLEDE   77 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-------CceEEEEECcCCChhHHHHHHHH
Confidence            56788888887774   334566678999999999999999888888763       34577889999988776665432


Q ss_pred             ---CCCCCcEEEEccc
Q 030274          151 ---YPGGFDLILGADI  163 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~  163 (180)
                         .....|++|-|-=
T Consensus        78 l~~~~~~IdvLVNNAG   93 (265)
T COG0300          78 LKERGGPIDVLVNNAG   93 (265)
T ss_pred             HHhcCCcccEEEECCC
Confidence               2247888887763

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=91.25  E-value=0.6  Score=36.27  Aligned_cols=46  Identities=17%  Similarity=0.263  Sum_probs=30.7

Q ss_pred             ecchH--HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274           55 VWPGA--MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE  106 (180)
Q Consensus        55 ~w~~~--~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~  106 (180)
                      -||-.  ..+.++|...+   ....|-|+|||-+-++.   ....+|...|+.+
T Consensus       162 kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a  209 (325)
T KOG3045|consen  162 KWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS---SERHKVHSFDLVA  209 (325)
T ss_pred             hCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh---ccccceeeeeeec
Confidence            45554  45566665553   55689999999987654   3345788888743

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.19  E-value=2.1  Score=33.77  Aligned_cols=84  Identities=13%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH-HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE-EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++++|=.|++.|+   ++..+++.|++|+.+|.+. ..++.+...+...+        .++.....|..+.+....+.
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g--------~~~~~~~~Dv~d~~~~~~~~   81 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG--------AKAVAVAGDISQRATADELV   81 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC--------CeEEEEeCCCCCHHHHHHHH
Confidence            467899999988764   3334556689999998743 33443333333322        24556677777665554443


Q ss_pred             hh--CCCCCcEEEEcccc
Q 030274          149 QK--YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~--~~~~fD~Ii~~d~~  164 (180)
                      ..  ..++.|++|.+--+
T Consensus        82 ~~~~~~g~iD~li~nAG~   99 (306)
T PRK07792         82 ATAVGLGGLDIVVNNAGI   99 (306)
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            21  13578999887643

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=91.11  E-value=2.8  Score=32.19  Aligned_cols=82  Identities=15%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      +++++|=.|++.|+   ++..+++.|.+|+.++.++...+.+.+.+...+        .++.....+..+.+....+.. 
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~v~~~~~~   80 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--------GEALAVKADVLDKESLEQARQQ   80 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHHH
Confidence            56788888886653   223344568999999998766655554443332        235556667766654443322 


Q ss_pred             --hCCCCCcEEEEccc
Q 030274          150 --KYPGGFDLILGADI  163 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~  163 (180)
                        ...+++|+++.+--
T Consensus        81 ~~~~~g~id~li~~ag   96 (278)
T PRK08277         81 ILEDFGPCDILINGAG   96 (278)
T ss_pred             HHHHcCCCCEEEECCC
Confidence              12357899988754

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=91.04  E-value=3.1  Score=31.51  Aligned_cols=82  Identities=12%  Similarity=0.219  Sum_probs=52.1

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++||=.|++.|+ |..    +++.|++|+.++.+...++.+...+...+        .++.....|..+.+.+..+..
T Consensus        10 ~~k~vlVtG~s~gI-G~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~i~~~~~   80 (255)
T PRK06113         10 DGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--------GQAFACRCDITSEQELSALAD   80 (255)
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            57899999977664 333    44458899999987766665544443322        235566778777665444322


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...+++|+++.+--+
T Consensus        81 ~~~~~~~~~d~li~~ag~   98 (255)
T PRK06113         81 FALSKLGKVDILVNNAGG   98 (255)
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence               223578999887654

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=90.96  E-value=4.5  Score=31.54  Aligned_cols=87  Identities=16%  Similarity=0.267  Sum_probs=60.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH--
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI--  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  147 (180)
                      +.++.+|-=|+..|+   ++..+++.|++|+.++.+++.++.++.-+...+..     ..++.....|..+.++...+  
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~l~~   80 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT-----GGKVLAIVCDVSKEVDVEKLVE   80 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCeeEEEECcCCCHHHHHHHHH
Confidence            578899999998774   56678888999999999998888777766655421     23455566666655433332  


Q ss_pred             --HhhCCCCCcEEEEcccc
Q 030274          148 --IQKYPGGFDLILGADIY  164 (180)
Q Consensus       148 --~~~~~~~fD~Ii~~d~~  164 (180)
                        .....++.|+++.|.-.
T Consensus        81 ~~~~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   81 FAVEKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHHHHhCCCCCEEEEcCCc
Confidence              23336789999987743

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=90.87  E-value=0.43  Score=35.06  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=22.3

Q ss_pred             eEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274           77 SILELGSGV-GV-TGILCSRFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        77 ~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~  113 (180)
                      +|-=+|.|- |+ .++.+|+.|.+|+++|.+++.++.++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~   40 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN   40 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence            445566554 53 33456677999999999998776654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=90.82  E-value=1.5  Score=31.63  Aligned_cols=88  Identities=11%  Similarity=0.161  Sum_probs=56.9

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHH-hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILC-SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~l-a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      ..+..|++.+.+...  .+.+|+=|||=+-...+.- ...+.+++..|++..-        +.-+        .+ .+..
T Consensus        10 ~T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~--------~~-~F~f   70 (162)
T PF10237_consen   10 ETAEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG--------GD-EFVF   70 (162)
T ss_pred             HHHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC--------Cc-ceEE
Confidence            345677777776543  4579999998776665554 2245799999998632        2211        01 2566


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +|......+..   ...++||+||+.||+..
T Consensus        71 yD~~~p~~~~~---~l~~~~d~vv~DPPFl~   98 (162)
T PF10237_consen   71 YDYNEPEELPE---ELKGKFDVVVIDPPFLS   98 (162)
T ss_pred             CCCCChhhhhh---hcCCCceEEEECCCCCC
Confidence            67766544332   23679999999999844

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK09072 short chain dehydrogenase; Provisional

Probab=90.81  E-value=2.2  Score=32.48  Aligned_cols=82  Identities=13%  Similarity=0.179  Sum_probs=50.6

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=.|++.|+   ++..+++.|++|++++.+++.++.+...+. .        ..++.....|..+.+....+...
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~--------~~~~~~~~~D~~d~~~~~~~~~~   74 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y--------PGRHRWVVADLTSEAGREAVLAR   74 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c--------CCceEEEEccCCCHHHHHHHHHH
Confidence            46678888876654   222345568999999998876655544331 1        12456667777776554443221


Q ss_pred             --CCCCCcEEEEcccc
Q 030274          151 --YPGGFDLILGADIY  164 (180)
Q Consensus       151 --~~~~fD~Ii~~d~~  164 (180)
                        ..++.|+++.+--+
T Consensus        75 ~~~~~~id~lv~~ag~   90 (263)
T PRK09072         75 AREMGGINVLINNAGV   90 (263)
T ss_pred             HHhcCCCCEEEECCCC
Confidence              13578999887543

>PRK09291 short chain dehydrogenase; Provisional

Probab=90.77  E-value=3.4  Score=31.19  Aligned_cols=76  Identities=20%  Similarity=0.205  Sum_probs=47.7

Q ss_pred             CeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           76 SSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++||=.|++.| +|..+    ++.|.+|++++.++...+.++......+        .++.+...|+.+.+.+...   .
T Consensus         3 ~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~---~   70 (257)
T PRK09291          3 KTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--------LALRVEKLDLTDAIDRAQA---A   70 (257)
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcceEEEeeCCCHHHHHHH---h
Confidence            46888887554 34443    4458899999987765555444433332        2356777888876554433   2


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      ..+.|+|+.+--
T Consensus        71 ~~~id~vi~~ag   82 (257)
T PRK09291         71 EWDVDVLLNNAG   82 (257)
T ss_pred             cCCCCEEEECCC
Confidence            347899988743

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=90.75  E-value=2.8  Score=30.42  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=22.3

Q ss_pred             eEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274           77 SILELGSGV-G-VTGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        77 ~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~  106 (180)
                      +|+=+|||. | .++..+++.| .+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            478899985 5 3555677777 4799999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07831 short chain dehydrogenase; Provisional

Probab=90.69  E-value=4.3  Score=30.87  Aligned_cols=86  Identities=15%  Similarity=0.203  Sum_probs=52.8

Q ss_pred             CCCCeEEEeCC-cCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGS-GVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~-G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|+ |.|+   +...+++.|.+|+.+|.++..++.+.+.++...      ...++.....|..+.+....+.
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~   88 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL------GLGRVEAVVCDVTSEAQVDALI   88 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc------CCceEEEEEccCCCHHHHHHHH
Confidence            35678888886 4443   233345568899999988776666655554421      0123556677777665544433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|+++.+--+
T Consensus        89 ~~~~~~~g~id~li~~ag~  107 (262)
T PRK07831         89 DAAVERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            21   23578998888754

>PRK08265 short chain dehydrogenase; Provisional

Probab=90.68  E-value=2.2  Score=32.64  Aligned_cols=81  Identities=7%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=.|++.|+   ++..+++.|++|+.++.+++.++.+.+.+   +        .++.+...|..+.+.+..+...
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~Dl~~~~~~~~~~~~   73 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--------ERARFIATDITDDAAIERAVAT   73 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CeeEEEEecCCCHHHHHHHHHH
Confidence            56789988876553   33334556899999999875444333221   1        1355677888877655444321


Q ss_pred             ---CCCCCcEEEEccccc
Q 030274          151 ---YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~y  165 (180)
                         ..++.|+++.+--++
T Consensus        74 ~~~~~g~id~lv~~ag~~   91 (261)
T PRK08265         74 VVARFGRVDILVNLACTY   91 (261)
T ss_pred             HHHHhCCCCEEEECCCCC
Confidence               235789998876543

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=90.67  E-value=0.8  Score=34.30  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             CCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           75 ASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .-...|||||-|-+-+.++...  .-+.+.++--.+-+..++.+....
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            3469999999998888888763  568888887777778877776654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.50  E-value=1.9  Score=34.85  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=25.0

Q ss_pred             CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274           74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~  106 (180)
                      ...+||=+|||. | .++..|++.| .+++.+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            567899999985 6 3455677777 4999999863

>PRK07326 short chain dehydrogenase; Provisional

Probab=90.31  E-value=3.4  Score=30.77  Aligned_cols=80  Identities=11%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++||=.|+ +|.+|..++    +.|.+|++++.++.....+.+.+...         .++.....+..+.+.+.....
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---------~~~~~~~~D~~~~~~~~~~~~   74 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---------GNVLGLAADVRDEADVQRAVD   74 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---------CcEEEEEccCCCHHHHHHHHH
Confidence            4578998886 555555554    35789999998876555444443321         135566677776655444332


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..+++|+|+.+.-
T Consensus        75 ~~~~~~~~~d~vi~~ag   91 (237)
T PRK07326         75 AIVAAFGGLDVLIANAG   91 (237)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            1   1247899887653

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=90.30  E-value=0.37  Score=38.37  Aligned_cols=77  Identities=16%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++...+|.=-|.|.-+..+.+.  ..+|+++|.++.+++.+++++...        ..++.+.+..+.+..   ..+..
T Consensus        19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--------~~r~~~~~~~F~~l~---~~l~~   87 (310)
T PF01795_consen   19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--------DDRFIFIHGNFSNLD---EYLKE   87 (310)
T ss_dssp             -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--------CTTEEEEES-GGGHH---HHHHH
T ss_pred             CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--------cceEEEEeccHHHHH---HHHHH
Confidence            36679999988988766665543  479999999999999998876643        234666666665543   22222


Q ss_pred             --CCCCCcEEEE
Q 030274          151 --YPGGFDLILG  160 (180)
Q Consensus       151 --~~~~fD~Ii~  160 (180)
                        ...++|-|+.
T Consensus        88 ~~~~~~~dgiL~   99 (310)
T PF01795_consen   88 LNGINKVDGILF   99 (310)
T ss_dssp             TTTTS-EEEEEE
T ss_pred             ccCCCccCEEEE
Confidence              2347777765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=90.23  E-value=3.5  Score=31.41  Aligned_cols=83  Identities=11%  Similarity=0.139  Sum_probs=49.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEec-CCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTD-HNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D-~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|++.|+   ++..+++.|++|+.+. .+++.++...+.++...       ..++.....|..+.+....+.
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~   78 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-------GIKAKAYPLNILEPETYKELF   78 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHH
Confidence            367889988987764   3334555689998875 34444444443333211       124566777877766554443


Q ss_pred             hh---CCCCCcEEEEcc
Q 030274          149 QK---YPGGFDLILGAD  162 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d  162 (180)
                      ..   ..+++|+++.+-
T Consensus        79 ~~~~~~~g~id~lv~nA   95 (260)
T PRK08416         79 KKIDEDFDRVDFFISNA   95 (260)
T ss_pred             HHHHHhcCCccEEEECc
Confidence            22   235789988775

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=90.12  E-value=3.6  Score=32.50  Aligned_cols=82  Identities=10%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++||=.|+..| +|..+    ++.|++|++++.+....+.+.+.+...        ..++.+...|..+.+.+..+..
T Consensus         5 ~~k~vlVTGas~g-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~~Dl~~~~~v~~~~~   75 (322)
T PRK07453          5 AKGTVIITGASSG-VGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--------PDSYTIIHIDLGDLDSVRRFVD   75 (322)
T ss_pred             CCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--------CCceEEEEecCCCHHHHHHHHH
Confidence            4668888887554 44443    445889999998876555444433221        1245667778877665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        76 ~~~~~~~~iD~li~nAg~   93 (322)
T PRK07453         76 DFRALGKPLDALVCNAAV   93 (322)
T ss_pred             HHHHhCCCccEEEECCcc
Confidence            2   23468999988654

>PRK07774 short chain dehydrogenase; Provisional

Probab=90.10  E-value=4.1  Score=30.59  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|+ +|.+|..++    +.|.+|++++.++...+.+...+...+        .++.....|..+.+.+..+..
T Consensus         5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   75 (250)
T PRK07774          5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--------GTAIAVQVDVSDPDSAKAMAD   75 (250)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence            5678888885 444555544    458999999988765555544443221        124455666666554433322


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+||.+--++
T Consensus        76 ~~~~~~~~id~vi~~ag~~   94 (250)
T PRK07774         76 ATVSAFGGIDYLVNNAAIY   94 (250)
T ss_pred             HHHHHhCCCCEEEECCCCc
Confidence            1   224689999877653

>PRK06197 short chain dehydrogenase; Provisional

Probab=90.10  E-value=4.4  Score=31.73  Aligned_cols=85  Identities=15%  Similarity=0.130  Sum_probs=51.9

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|+..| +|..+    ++.|.+|++++.+++..+.+.+.+....      ...++.+...|..+.+.+..+.
T Consensus        14 ~~~k~vlItGas~g-IG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~d~~~v~~~~   86 (306)
T PRK06197         14 QSGRVAVVTGANTG-LGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT------PGADVTLQELDLTSLASVRAAA   86 (306)
T ss_pred             CCCCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CCCceEEEECCCCCHHHHHHHH
Confidence            36778998887544 44444    4458899999988766555544444321      0124556677777766554443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|++|.+--+
T Consensus        87 ~~~~~~~~~iD~li~nAg~  105 (306)
T PRK06197         87 DALRAAYPRIDLLINNAGV  105 (306)
T ss_pred             HHHHhhCCCCCEEEECCcc
Confidence            22   23578999887654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.04  E-value=5.5  Score=29.10  Aligned_cols=45  Identities=22%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             CCCCCeEEEeCC-cC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHHHHH
Q 030274           72 VLQASSILELGS-GV-GV-TGILCSRFCREVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        72 ~~~~~~vLdlG~-G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~~n~  116 (180)
                      ..++++++=+|+ |. |. .+..+++.+.+|+.++.+.+-.+.....+
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l   72 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL   72 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            347789999986 43 53 33345556789999988766555444443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08226 short chain dehydrogenase; Provisional

Probab=89.98  E-value=3.7  Score=31.18  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|+..| +|..+    ++.|++|+.++.++...+.+++ +...+        .++.....|..+.+.+..+..
T Consensus         5 ~~~~~lItG~s~g-iG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~~--------~~~~~~~~Dl~~~~~v~~~~~   74 (263)
T PRK08226          5 TGKTALITGALQG-IGEGIARVFARHGANLILLDISPEIEKLADE-LCGRG--------HRCTAVVADVRDPASVAAAIK   74 (263)
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHhC--------CceEEEECCCCCHHHHHHHHH
Confidence            5678998887654 34443    3458999999987654333332 22221        235566677777655544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+--+
T Consensus        75 ~~~~~~~~id~vi~~ag~   92 (263)
T PRK08226         75 RAKEKEGRIDILVNNAGV   92 (263)
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            1   23578999987764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=89.97  E-value=0.54  Score=38.57  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=27.7

Q ss_pred             eEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274           77 SILELGSGV-GV-TGILCSRFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        77 ~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~  113 (180)
                      +|--+|+|. |+ .|..+|+.|.+|+++|+++.-++.++
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln   40 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN   40 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence            455567765 63 45567888999999999998777665

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=89.95  E-value=2.5  Score=32.21  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      +++++|=.|++.|+   ++..+++.|++|++++.++..++.+....   +        .++.....|..+.+....+.. 
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~~~~~~~~   73 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--------DHVLVVEGDVTSYADNQRAVDQ   73 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CcceEEEccCCCHHHHHHHHHH
Confidence            56789999986654   22234456899999999876655443322   1        124456667666554443322 


Q ss_pred             --hCCCCCcEEEEcccc
Q 030274          150 --KYPGGFDLILGADIY  164 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~  164 (180)
                        ...++.|+++.+--+
T Consensus        74 ~~~~~g~id~li~~ag~   90 (263)
T PRK06200         74 TVDAFGKLDCFVGNAGI   90 (263)
T ss_pred             HHHhcCCCCEEEECCCC
Confidence              123578999888654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.92  E-value=1.3  Score=35.51  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=+|||. |..++.+|+. |.+|+++|.+++-++.+++
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence            344678999999965 7776666664 7789999998887776653

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.89  E-value=3.7  Score=30.77  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=50.5

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      +++++|=.|+..|+   +...+++.|.+|++++.++.-.+.+..++.. +        .++.+...+..+.+.+..... 
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--------~~~~~~~~D~~~~~~~~~~~~~   74 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--------GRAIAVAADVSDEADVEAAVAA   74 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--------CeEEEEECCCCCHHHHHHHHHH
Confidence            56688888875543   2223445688999999988665555444432 1        235566777777665544332 


Q ss_pred             --hCCCCCcEEEEcccc
Q 030274          150 --KYPGGFDLILGADIY  164 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~  164 (180)
                        ...+++|+|+.+--.
T Consensus        75 ~~~~~~~~d~vi~~ag~   91 (251)
T PRK07231         75 ALERFGSVDILVNNAGT   91 (251)
T ss_pred             HHHHhCCCCEEEECCCC
Confidence              123478999887754

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=89.88  E-value=0.93  Score=31.79  Aligned_cols=41  Identities=17%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             EeCCcCC--hHHHHHh--hc--CCeEEEecCCHHHHHHHHHH--HHHhc
Q 030274           80 ELGSGVG--VTGILCS--RF--CREVLLTDHNEEVLKILKKN--IEHHT  120 (180)
Q Consensus        80 dlG~G~G--~~~l~la--~~--~~~V~~~D~~~~~l~~~~~n--~~~n~  120 (180)
                      |+||+.|  .....+.  +.  +.+|+++|.++...+.+++|  +..|.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~   49 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND   49 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence            8999999  3333332  23  57899999999999999999  77763

; PDB: 2PY6_A.

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=89.86  E-value=3.6  Score=30.91  Aligned_cols=80  Identities=16%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             CeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh--
Q 030274           76 SSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ--  149 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (180)
                      +++|=.|++ |.+|..++    +.|.+|++++.++...+.+...+...+        .++.....++.+.+.+.....  
T Consensus         2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~   72 (255)
T TIGR01963         2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--------GSVIYLVADVTKEDEIADMIAAA   72 (255)
T ss_pred             CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEECCCCCHHHHHHHHHHH
Confidence            457777744 55555544    347899999998766655554443322        246667778887664433322  


Q ss_pred             -hCCCCCcEEEEcccc
Q 030274          150 -KYPGGFDLILGADIY  164 (180)
Q Consensus       150 -~~~~~fD~Ii~~d~~  164 (180)
                       ...++.|+|+.+.-.
T Consensus        73 ~~~~~~~d~vi~~a~~   88 (255)
T TIGR01963        73 AAEFGGLDILVNNAGI   88 (255)
T ss_pred             HHhcCCCCEEEECCCC
Confidence             123468998877643

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=89.80  E-value=4.9  Score=30.23  Aligned_cols=81  Identities=16%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++||=.|+ +|.+|..+++    .|.+|++++.++...+.+...+...+        .++.....+..+.+.+.....
T Consensus         3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   73 (258)
T PRK12429          3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--------GKAIGVAMDVTDEEAINAGID   73 (258)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence            4567887776 4555665554    47899999998876665555554432        345566777777665444332


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..+.+|+||.+--
T Consensus        74 ~~~~~~~~~d~vi~~a~   90 (258)
T PRK12429         74 YAVETFGGVDILVNNAG   90 (258)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            1   2246899887664

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=89.79  E-value=1.3  Score=35.36  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             CCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      .++.+||=.|||. |..++.+++. |. +|+++|.+++-++.+++
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence            3678899899875 7777777764 65 79999999887777764

>PRK09186 flagellin modification protein A; Provisional

Probab=89.76  E-value=5.5  Score=30.03  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++||=.|++.| +|..    +++.|.+|++++.+++.++.+...+....      ....+.+...|..+.+.+..+..
T Consensus         3 ~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~d~~~~~~~~~   75 (256)
T PRK09186          3 KGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF------KSKKLSLVELDITDQESLEEFLS   75 (256)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc------CCCceeEEEecCCCHHHHHHHHH
Confidence            5678998988654 3444    44458899999988776666555543321      01124455677777665544432


Q ss_pred             h---CCCCCcEEEEcc
Q 030274          150 K---YPGGFDLILGAD  162 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d  162 (180)
                      .   ..++.|++|.+-
T Consensus        76 ~~~~~~~~id~vi~~A   91 (256)
T PRK09186         76 KSAEKYGKIDGAVNCA   91 (256)
T ss_pred             HHHHHcCCccEEEECC
Confidence            1   224689998775

>PRK12829 short chain dehydrogenase; Provisional

Probab=89.76  E-value=3.4  Score=31.25  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|++.| +|..++    +.|.+|++++.++..++.........          ++.....++.+.+.+...+
T Consensus         9 ~~~~~vlItGa~g~-iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~   77 (264)
T PRK12829          9 LDGLRVLVTGGASG-IGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----------KVTATVADVADPAQVERVF   77 (264)
T ss_pred             cCCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----------ceEEEEccCCCHHHHHHHH
Confidence            46789999998644 344433    45889999999876555443322111          3456777777765544332


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+|+.+-..
T Consensus        78 ~~~~~~~~~~d~vi~~ag~   96 (264)
T PRK12829         78 DTAVERFGGLDVLVNNAGI   96 (264)
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            21   12478999876643

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.70  E-value=4.9  Score=32.28  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=33.1

Q ss_pred             CCCCCCCeEEEeCC-c-CChHHHHHhhc-CCeEEEecCCHHHHHHHH
Q 030274           70 PDVLQASSILELGS-G-VGVTGILCSRF-CREVLLTDHNEEVLKILK  113 (180)
Q Consensus        70 ~~~~~~~~vLdlG~-G-~G~~~l~la~~-~~~V~~~D~~~~~l~~~~  113 (180)
                      ....++.+||=.|+ | .|..++.+|+. |.+|++++.+++-.+.++
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK  200 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            33457789999998 4 47777777764 789999998887666655

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=89.66  E-value=1.4  Score=34.24  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             CCCCeEEEeCCcC-ChHHHHHhhc-CCe-EEEecCCHHHHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGILCSRF-CRE-VLLTDHNEEVLKILKK  114 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l~la~~-~~~-V~~~D~~~~~l~~~~~  114 (180)
                      .++.+||=.|+|. |..++.+|+. |.+ |+++|.+++-++.+++
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~  163 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS  163 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            3678999998875 6666666664 665 9999988876666554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.65  E-value=1.1  Score=36.55  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             CCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHHH
Q 030274           72 VLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        72 ~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n  115 (180)
                      ..++.+||.+|||. |...+.+|+. |. +|+++|.+++.++.+++.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            44678999999987 7777777764 65 699999999888877764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=89.64  E-value=2.8  Score=31.95  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=25.1

Q ss_pred             CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274           74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~  106 (180)
                      ++.+|+=+|||. | .++..|++.| .+++.+|.+.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            567899999985 6 4555777777 6899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05650 short chain dehydrogenase; Provisional

Probab=89.60  E-value=4.7  Score=30.86  Aligned_cols=79  Identities=20%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             eEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---
Q 030274           77 SILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ---  149 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (180)
                      +||=.|+..| +|..    +++.|.+|++++.+..-++.+...+...+        .++.+...|+.+.+.+..+..   
T Consensus         2 ~vlVtGasgg-IG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~~i~   72 (270)
T PRK05650          2 RVMITGAASG-LGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--------GDGFYQRCDVRDYSQLTALAQACE   72 (270)
T ss_pred             EEEEecCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHHHHHH
Confidence            5777776544 4444    44458899999988766665555444332        235566777776654444332   


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                      ...+++|++|.+--.
T Consensus        73 ~~~~~id~lI~~ag~   87 (270)
T PRK05650         73 EKWGGIDVIVNNAGV   87 (270)
T ss_pred             HHcCCCCEEEECCCC
Confidence            123578998887643

>PRK08251 short chain dehydrogenase; Provisional

Probab=89.48  E-value=5.2  Score=30.00  Aligned_cols=82  Identities=22%  Similarity=0.254  Sum_probs=51.1

Q ss_pred             CCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           75 ASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      ++++|=.|+. |.+|..++    +.|.+|++++.++..++.+...+....      ...++.+...|..+.+.+..... 
T Consensus         2 ~k~vlItGas-~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~   74 (248)
T PRK08251          2 RQKILITGAS-SGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY------PGIKVAVAALDVNDHDQVFEVFAE   74 (248)
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC------CCceEEEEEcCCCCHHHHHHHHHH
Confidence            3578878864 44555444    457899999998877666655544321      12346677788887765544332 


Q ss_pred             --hCCCCCcEEEEccc
Q 030274          150 --KYPGGFDLILGADI  163 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~  163 (180)
                        ...++.|+|+.+--
T Consensus        75 ~~~~~~~id~vi~~ag   90 (248)
T PRK08251         75 FRDELGGLDRVIVNAG   90 (248)
T ss_pred             HHHHcCCCCEEEECCC
Confidence              12357899888763

>PRK07024 short chain dehydrogenase; Provisional

Probab=89.47  E-value=2.7  Score=31.97  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             CeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           76 SSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      ++||=.|+..| +|..    +++.|.+|+.++.+++.++.+.+.+...         .++.....|..+.+.+...... 
T Consensus         3 ~~vlItGas~g-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~Dl~~~~~i~~~~~~~   72 (257)
T PRK07024          3 LKVFITGASSG-IGQALAREYARQGATLGLVARRTDALQAFAARLPKA---------ARVSVYAADVRDADALAAAAADF   72 (257)
T ss_pred             CEEEEEcCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---------CeeEEEEcCCCCHHHHHHHHHHH
Confidence            46777887554 4444    4456889999999876655443332211         1466777888876655443221 


Q ss_pred             --CCCCCcEEEEcccc
Q 030274          151 --YPGGFDLILGADIY  164 (180)
Q Consensus       151 --~~~~fD~Ii~~d~~  164 (180)
                        ..+.+|+++.+--+
T Consensus        73 ~~~~g~id~lv~~ag~   88 (257)
T PRK07024         73 IAAHGLPDVVIANAGI   88 (257)
T ss_pred             HHhCCCCCEEEECCCc
Confidence              23468999987643

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=89.43  E-value=1  Score=38.31  Aligned_cols=81  Identities=10%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhh---cC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGILCSR---FC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~---~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ++..|.|..||+|..-+...+   .+   ..+++-+....+...++.|...++....     ..   ...+++.  +...
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~-----t~---~~~~~dt--l~~~  286 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA-----NF---NIINADT--LTTK  286 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc-----cc---CcccCCc--CCCc
Confidence            456899999999865544332   12   4689999999999999999877652110     01   1111211  1110


Q ss_pred             HhhCCCCCcEEEEcccc
Q 030274          148 IQKYPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~  164 (180)
                      ......+||+|+++||+
T Consensus       287 d~~~~~~~D~v~~NpPf  303 (501)
T TIGR00497       287 EWENENGFEVVVSNPPY  303 (501)
T ss_pred             cccccccCCEEeecCCc
Confidence            00013469999999986

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.39  E-value=0.71  Score=31.20  Aligned_cols=33  Identities=27%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             CCeEEEeCCcCC-hHHHHHhhcCCeEEEecCCHH
Q 030274           75 ASSILELGSGVG-VTGILCSRFCREVLLTDHNEE  107 (180)
Q Consensus        75 ~~~vLdlG~G~G-~~~l~la~~~~~V~~~D~~~~  107 (180)
                      ..+|.|+|.|-= -.+-.+++.|..|++||+++.
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~   47 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK   47 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc
Confidence            348999988763 466678888999999999875

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=89.35  E-value=3.8  Score=30.77  Aligned_cols=82  Identities=13%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++||=.|++.| +|..    +++.|++|++++.++  ...+.+.+...+        .++.....|..+.+.+..+.
T Consensus         3 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~   71 (248)
T TIGR01832         3 LEGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALG--------RRFLSLTADLSDIEAIKALV   71 (248)
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcC--------CceEEEECCCCCHHHHHHHH
Confidence            36788999998665 3444    444588999999764  222333333221        23566778888776655443


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|+||.+.-+.
T Consensus        72 ~~~~~~~~~~d~li~~ag~~   91 (248)
T TIGR01832        72 DSAVEEFGHIDILVNNAGII   91 (248)
T ss_pred             HHHHHHcCCCCEEEECCCCC
Confidence            21   235789999876443

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.28  E-value=1.1  Score=35.96  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=32.6

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ++|-=||+|+ | -++..++..|.+|+..|.+++.++.++..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~   51 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVA   51 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence            5788899986 4 4566677789999999999988877665443

>PRK12939 short chain dehydrogenase; Provisional

Probab=89.27  E-value=4.5  Score=30.27  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++ |.+|..++    +.|.+|++++.+++.++.....++..+        .++.+...|..+.+.+..+..
T Consensus         6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   76 (250)
T PRK12939          6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--------GRAHAIAADLADPASVQRFFD   76 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            56788877764 44555544    458899999988766555544443221        245667777777655444332


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..+++|+|+.+--
T Consensus        77 ~~~~~~~~id~vi~~ag   93 (250)
T PRK12939         77 AAAAALGGLDGLVNNAG   93 (250)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            1   1247899887653

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.25  E-value=3.7  Score=30.83  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCC
Q 030274           73 LQASSILELGSGV-G-VTGILCSRFC-REVLLTDHN  105 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~  105 (180)
                      .+..+|+=+|||. | .++..+++.| .+++.+|.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3667999999985 5 4556677777 579999987

>PRK06057 short chain dehydrogenase; Provisional

Probab=89.23  E-value=2.3  Score=32.25  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++||=.|++.|+ |..    +++.|++|++++.++..++...+.+   +          ..+...+..+.+.+..+.
T Consensus         5 ~~~~~vlItGasggI-G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~----------~~~~~~D~~~~~~~~~~~   70 (255)
T PRK06057          5 LAGRVAVITGGGSGI-GLATARRLAAEGATVVVGDIDPEAGKAAADEV---G----------GLFVPTDVTDEDAVNALF   70 (255)
T ss_pred             CCCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---C----------CcEEEeeCCCHHHHHHHH
Confidence            467899999996553 443    4456899999998875444433322   1          124566777665544433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+|+.+.-.
T Consensus        71 ~~~~~~~~~id~vi~~ag~   89 (255)
T PRK06057         71 DTAAETYGSVDIAFNNAGI   89 (255)
T ss_pred             HHHHHHcCCCCEEEECCCc
Confidence            21   23578998887643

>PRK05599 hypothetical protein; Provisional

Probab=89.15  E-value=3.6  Score=31.14  Aligned_cols=81  Identities=17%  Similarity=0.226  Sum_probs=50.9

Q ss_pred             eEEEeCCcCChHHHHHhh---cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---h
Q 030274           77 SILELGSGVGVTGILCSR---FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ---K  150 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  150 (180)
                      ++|=.|++.|+ |..+++   .|.+|+.++.+++-++.+.+.++..+       ...+.....|..+.+....+..   .
T Consensus         2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~   73 (246)
T PRK05599          2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-------ATSVHVLSFDAQDLDTHRELVKQTQE   73 (246)
T ss_pred             eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-------CCceEEEEcccCCHHHHHHHHHHHHH
Confidence            56777887764 443332   37899999988877776666665443       1135566777777765554432   2


Q ss_pred             CCCCCcEEEEccccc
Q 030274          151 YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y  165 (180)
                      ..++.|+++.+.-++
T Consensus        74 ~~g~id~lv~nag~~   88 (246)
T PRK05599         74 LAGEISLAVVAFGIL   88 (246)
T ss_pred             hcCCCCEEEEecCcC
Confidence            235789988766443

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.13  E-value=3.5  Score=31.88  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=49.3

Q ss_pred             CCCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=.|++.  |+   ++..+++.|++|+.++.+....+.+++..+..+         .......|..+.+....+
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---------~~~~~~~Dv~d~~~v~~~   75 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---------SDFVLPCDVEDIASVDAV   75 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---------CceEEeCCCCCHHHHHHH
Confidence            3577899999875  42   444556678999999876543333332222211         112456677776655544


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|++|.|--+
T Consensus        76 ~~~~~~~~g~iD~lVnnAG~   95 (271)
T PRK06505         76 FEALEKKWGKLDFVVHAIGF   95 (271)
T ss_pred             HHHHHHHhCCCCEEEECCcc
Confidence            332   23589999887654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.09  E-value=2.6  Score=32.10  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             CCCCeEEEeCCcC-ChHHH----HHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGV-GVTGI----LCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l----~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ..++++|=.|+++ +-+|.    .+++.|++|+.++.+....+.+++.   ..        .++.....|..+.+....+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~--------~~~~~~~~Dl~~~~~v~~~   73 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD--------EEDLLVECDVASDESIERA   73 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc--------CceeEEeCCCCCHHHHHHH
Confidence            3678899999863 23343    4555689999998764433322221   11        1345667777776655544


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..+++|+++.|--+
T Consensus        74 ~~~~~~~~g~iD~lv~nAg~   93 (252)
T PRK06079         74 FATIKERVGKIDGIVHAIAY   93 (252)
T ss_pred             HHHHHHHhCCCCEEEEcccc
Confidence            322   23579999987654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.08  E-value=5.9  Score=29.79  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=30.9

Q ss_pred             CCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      .++.+||-.|+|. |...+.+++ .|.+|++++.++...+.++.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~  176 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE  176 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence            4678999999986 555555555 47899999998876666543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06181 short chain dehydrogenase; Provisional

Probab=89.06  E-value=5.1  Score=30.39  Aligned_cols=80  Identities=18%  Similarity=0.290  Sum_probs=48.6

Q ss_pred             CeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           76 SSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      ++||=.|+. |.+|..+    ++.|.+|++++.++...+.+.+.+...+        .++.+...|..+.+.+...... 
T Consensus         2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~   72 (263)
T PRK06181          2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--------GEALVVPTDVSDAEACERLIEAA   72 (263)
T ss_pred             CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHHHH
Confidence            467767754 4445544    3457899999998766555554444332        2455667777776655443321 


Q ss_pred             --CCCCCcEEEEcccc
Q 030274          151 --YPGGFDLILGADIY  164 (180)
Q Consensus       151 --~~~~fD~Ii~~d~~  164 (180)
                        ..++.|+|+.+--.
T Consensus        73 ~~~~~~id~vi~~ag~   88 (263)
T PRK06181         73 VARFGGIDILVNNAGI   88 (263)
T ss_pred             HHHcCCCCEEEECCCc
Confidence              12468999888643

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.03  E-value=1.3  Score=36.85  Aligned_cols=41  Identities=15%  Similarity=0.077  Sum_probs=31.8

Q ss_pred             CCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      ..+++|+=+|+|. |......++ .|++|+.+|.++.-.+.++
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~  242 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA  242 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence            5789999999997 766665554 5889999999887655554

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08703 short chain dehydrogenase; Provisional

Probab=88.99  E-value=7.9  Score=28.91  Aligned_cols=84  Identities=17%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC--chhhH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS--DQINK  146 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~~~  146 (180)
                      .+++++|=.||+.| +|..+    ++.|.+|++++.++..++.....+...+       ...+.....+..+.  +.+..
T Consensus         4 l~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~D~~~~~~~~~~~   75 (239)
T PRK08703          4 LSDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-------HPEPFAIRFDLMSAEEKEFEQ   75 (239)
T ss_pred             CCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-------CCCcceEEeeecccchHHHHH
Confidence            35678999997544 44444    4458899999998876665555544322       11233455665532  12222


Q ss_pred             H----HhhCCCCCcEEEEcccc
Q 030274          147 I----IQKYPGGFDLILGADIY  164 (180)
Q Consensus       147 ~----~~~~~~~fD~Ii~~d~~  164 (180)
                      +    .....+.+|+|+.+--.
T Consensus        76 ~~~~i~~~~~~~id~vi~~ag~   97 (239)
T PRK08703         76 FAATIAEATQGKLDGIVHCAGY   97 (239)
T ss_pred             HHHHHHHHhCCCCCEEEEeccc
Confidence            1    11222578998877643

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=88.93  E-value=0.75  Score=36.83  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             CCCCeEEEeCCcC-ChHHHHHhh--c-CCeEEEecCCHHHHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGILCSR--F-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l~la~--~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      .++.+||=+|||. |+.++.+++  . +.+|+++|.+++-++.+++
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~  207 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF  207 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence            4678999999976 777666665  2 3689999999877777654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=88.91  E-value=2.7  Score=31.83  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=24.2

Q ss_pred             CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274           74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~  106 (180)
                      .+.+|+=+|||. | .++..|++.| .+++.+|.+.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            567999999985 5 4555677776 5888887543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06138 short chain dehydrogenase; Provisional

Probab=88.80  E-value=5.2  Score=30.01  Aligned_cols=81  Identities=15%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.||..| +|..    +++.|++|++++.+.+..+.....+. .+        .++.....|..+.+.+.....
T Consensus         4 ~~k~~lItG~sg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--------~~~~~~~~D~~~~~~~~~~~~   73 (252)
T PRK06138          4 AGRVAIVTGAGSG-IGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--------GRAFARQGDVGSAEAVEALVD   73 (252)
T ss_pred             CCcEEEEeCCCch-HHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--------CeEEEEEcCCCCHHHHHHHHH
Confidence            5678999998654 3443    44458899999988765555444443 11        245667777777665544322


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..+++|+|+.+--.
T Consensus        74 ~i~~~~~~id~vi~~ag~   91 (252)
T PRK06138         74 FVAARWGRLDVLVNNAGF   91 (252)
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   22578998887653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=88.76  E-value=6.4  Score=34.20  Aligned_cols=87  Identities=13%  Similarity=0.140  Sum_probs=50.0

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCC-CCCCCCcEEEEEeecCCCchhh
Q 030274           71 DVLQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSE-NPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +...+++||=.|+. |.+|..++    +.|.+|++++.+..-++.+..++..+.... ......++.+...|..+.+.+.
T Consensus        76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~  154 (576)
T PLN03209         76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG  154 (576)
T ss_pred             ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence            34467788888774 55565544    458899999988766555544443321100 0000124566777777655443


Q ss_pred             HHHhhCCCCCcEEEEcc
Q 030274          146 KIIQKYPGGFDLILGAD  162 (180)
Q Consensus       146 ~~~~~~~~~fD~Ii~~d  162 (180)
                      ..    .+..|+||.+-
T Consensus       155 ~a----LggiDiVVn~A  167 (576)
T PLN03209        155 PA----LGNASVVICCI  167 (576)
T ss_pred             HH----hcCCCEEEEcc
Confidence            32    34689988774

>PRK06196 oxidoreductase; Provisional

Probab=88.76  E-value=3.3  Score=32.65  Aligned_cols=79  Identities=13%  Similarity=0.238  Sum_probs=49.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++.| +|..++    +.|.+|++++.+++..+.+...+..            +.....|..+.+.+..+.
T Consensus        24 l~~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~------------v~~~~~Dl~d~~~v~~~~   90 (315)
T PRK06196         24 LSGKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPDVAREALAGIDG------------VEVVMLDLADLESVRAFA   90 (315)
T ss_pred             CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh------------CeEEEccCCCHHHHHHHH
Confidence            36778998997544 455544    4588999999887655444333221            346677777766554443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|++|.+--+
T Consensus        91 ~~~~~~~~~iD~li~nAg~  109 (315)
T PRK06196         91 ERFLDSGRRIDILINNAGV  109 (315)
T ss_pred             HHHHhcCCCCCEEEECCCC
Confidence            21   23578999887654

>PRK05875 short chain dehydrogenase; Provisional

Probab=88.63  E-value=6.4  Score=30.14  Aligned_cols=83  Identities=17%  Similarity=0.245  Sum_probs=49.7

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++.| +|..+    ++.|++|++++.+++..+.....+...+      ...++.+...+..+.+.......
T Consensus         6 ~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~~~~~~~~~~~   78 (276)
T PRK05875          6 QDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK------GAGAVRYEPADVTDEDQVARAVD   78 (276)
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc------CCCceEEEEcCCCCHHHHHHHHH
Confidence            5678999997544 34444    4458899999988765554444433221      01245566677777655444332


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|+++.+--
T Consensus        79 ~~~~~~~~~d~li~~ag   95 (276)
T PRK05875         79 AATAWHGRLHGVVHCAG   95 (276)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            1   1347899887654

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=88.56  E-value=4.7  Score=30.47  Aligned_cols=83  Identities=17%  Similarity=0.210  Sum_probs=50.6

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|+..| +|..    +++.|++|++++.++...+.+.+.+...+        .++.....|..+.+.+.....
T Consensus         6 ~~~~vlItGasg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   76 (262)
T PRK13394          6 NGKTAVVTGAASG-IGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--------GKAIGVAMDVTNEDAVNAGID   76 (262)
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--------ceEEEEECCCCCHHHHHHHHH
Confidence            5678887776543 3443    44568899999998866655555444332        234556667766655443322


Q ss_pred             ---hCCCCCcEEEEccccc
Q 030274          150 ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y  165 (180)
                         ...++.|+||.+.-..
T Consensus        77 ~~~~~~~~~d~vi~~ag~~   95 (262)
T PRK13394         77 KVAERFGSVDILVSNAGIQ   95 (262)
T ss_pred             HHHHHcCCCCEEEECCccC
Confidence               1234689988877543

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.52  E-value=1.8  Score=33.05  Aligned_cols=81  Identities=17%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             CCCCeEEEeCCc-CChHHHHHh----hcCCeEEEecCCH--HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274           73 LQASSILELGSG-VGVTGILCS----RFCREVLLTDHNE--EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        73 ~~~~~vLdlG~G-~G~~~l~la----~~~~~V~~~D~~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +.++++|=.|+| ++-+|..++    +.|++|+.++.+.  +.++.+.+.+   +        .++.....|..+.+...
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--------~~~~~~~~Dv~~~~~i~   73 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--------EPAPVLELDVTNEEHLA   73 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--------CCCcEEeCCCCCHHHHH
Confidence            357789999984 344555544    4589999998653  3333332221   1        12345667777766555


Q ss_pred             HHHh---hCCCCCcEEEEcccc
Q 030274          146 KIIQ---KYPGGFDLILGADIY  164 (180)
Q Consensus       146 ~~~~---~~~~~fD~Ii~~d~~  164 (180)
                      .+..   ...+++|++|.|--+
T Consensus        74 ~~~~~~~~~~g~iD~li~nAG~   95 (256)
T PRK07889         74 SLADRVREHVDGLDGVVHSIGF   95 (256)
T ss_pred             HHHHHHHHHcCCCcEEEEcccc
Confidence            4432   223689999887644

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=88.46  E-value=6.6  Score=29.72  Aligned_cols=81  Identities=10%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|++.|+   ++..+++.|++|+.+|.++. ...+...+...+        .++.....|..+.+....+..
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   76 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG--------GEALALTADLETYAGAQAAMA   76 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC--------CeEEEEEEeCCCHHHHHHHHH
Confidence            356789999976653   23334456899999998753 333333333222        235566777777654443332


Q ss_pred             h---CCCCCcEEEEcc
Q 030274          150 K---YPGGFDLILGAD  162 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d  162 (180)
                      .   ..+.+|+++.+-
T Consensus        77 ~~~~~~~~id~lv~nA   92 (260)
T PRK12823         77 AAVEAFGRIDVLINNV   92 (260)
T ss_pred             HHHHHcCCCeEEEECC
Confidence            1   235789988765

>PLN02253 xanthoxin dehydrogenase

Probab=88.46  E-value=5  Score=30.83  Aligned_cols=80  Identities=11%  Similarity=0.204  Sum_probs=49.3

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|++.| +|..    +++.|++|++++.++...+.+...+..         ..++.....|..+.+.+..+..
T Consensus        17 ~~k~~lItGas~g-IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~   86 (280)
T PLN02253         17 LGKVALVTGGATG-IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---------EPNVCFFHCDVTVEDDVSRAVD   86 (280)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---------CCceEEEEeecCCHHHHHHHHH
Confidence            5678998886544 3444    445689999999877655444333211         1245677788887765544322


Q ss_pred             ---hCCCCCcEEEEccc
Q 030274          150 ---KYPGGFDLILGADI  163 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~  163 (180)
                         ...++.|++|.+--
T Consensus        87 ~~~~~~g~id~li~~Ag  103 (280)
T PLN02253         87 FTVDKFGTLDIMVNNAG  103 (280)
T ss_pred             HHHHHhCCCCEEEECCC
Confidence               12357899887764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=88.45  E-value=5.1  Score=31.30  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             CCCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274           73 LQASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~  106 (180)
                      +.+.+|+=+|||. | .++..|++.| .+++.+|.+.
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            3677999999985 6 4555778877 7899999763

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=88.39  E-value=0.79  Score=35.19  Aligned_cols=39  Identities=18%  Similarity=0.257  Sum_probs=28.7

Q ss_pred             CCCCeEEEeCCcC-ChHHH-HHhhcC-CeEEEecCCHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGI-LCSRFC-REVLLTDHNEEVLKI  111 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l-~la~~~-~~V~~~D~~~~~l~~  111 (180)
                      ++..+|+=+|+|- |.++. +|++.| .+++.+|.+.-.+..
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN   69 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTN   69 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccc
Confidence            3667899999974 87777 677876 689999986544433

>PLN02780 ketoreductase/ oxidoreductase

Probab=88.34  E-value=7.1  Score=31.09  Aligned_cols=85  Identities=14%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC--chhhHHH
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS--DQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  148 (180)
                      .++.+|=.|++.|+   ++..+++.|.+|++++.+++.++.+.+.++...      ...++.....|..+.  +....+.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~------~~~~~~~~~~Dl~~~~~~~~~~l~  125 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY------SKTQIKTVVVDFSGDIDEGVKRIK  125 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC------CCcEEEEEEEECCCCcHHHHHHHH
Confidence            46789999987664   333455668999999999987777766665432      012344556666532  1122222


Q ss_pred             hhCC-CCCcEEEEcccc
Q 030274          149 QKYP-GGFDLILGADIY  164 (180)
Q Consensus       149 ~~~~-~~fD~Ii~~d~~  164 (180)
                      .... ...|+++.|--+
T Consensus       126 ~~~~~~didilVnnAG~  142 (320)
T PLN02780        126 ETIEGLDVGVLINNVGV  142 (320)
T ss_pred             HHhcCCCccEEEEecCc
Confidence            2222 234577766543

>PLN02740 Alcohol dehydrogenase-like

Probab=88.33  E-value=1.5  Score=35.68  Aligned_cols=44  Identities=25%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=+|+|. |..++.+|+. |. +|+++|.+++-++.+++
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            345778999999875 7777767764 66 69999998877777653

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=88.32  E-value=1.6  Score=34.85  Aligned_cols=44  Identities=7%  Similarity=-0.043  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=.|+|. |..++.+|+ .|.+|++++.+++-.+.+++
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~  207 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA  207 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence            344678999999864 666666665 47789999998877766655

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK06940 short chain dehydrogenase; Provisional

Probab=88.28  E-value=6.3  Score=30.44  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=49.4

Q ss_pred             CeEEEeCCcCChHHHHHhh---cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh--
Q 030274           76 SSILELGSGVGVTGILCSR---FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK--  150 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  150 (180)
                      +.+|=-|+|  .+|..+++   .|.+|+++|.++..++.+.+.+...+        .++.....|..+.+.+..+...  
T Consensus         3 k~~lItGa~--gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~d~~~i~~~~~~~~   72 (275)
T PRK06940          3 EVVVVIGAG--GIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--------FDVSTQEVDVSSRESVKALAATAQ   72 (275)
T ss_pred             CEEEEECCC--hHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEeecCCHHHHHHHHHHHH
Confidence            355655653  46666554   37899999998765555544443322        2456677888877665554332  


Q ss_pred             CCCCCcEEEEccccc
Q 030274          151 YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y  165 (180)
                      ..+++|+++.+--+.
T Consensus        73 ~~g~id~li~nAG~~   87 (275)
T PRK06940         73 TLGPVTGLVHTAGVS   87 (275)
T ss_pred             hcCCCCEEEECCCcC
Confidence            135789998877543

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=88.19  E-value=1.6  Score=35.28  Aligned_cols=44  Identities=23%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=.|||. |..++.+|+. |. +|+++|.+++-++.+++
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~  228 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK  228 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            344678999999875 7777777764 66 79999998887776643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK06701 short chain dehydrogenase; Provisional

Probab=88.19  E-value=5.8  Score=30.97  Aligned_cols=84  Identities=13%  Similarity=0.228  Sum_probs=49.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH-HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE-EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|++.|+   ++..+++.|.+|+.++.++ ..++.....++..+        .++.+...|..+.+.+..+.
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~  115 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--------VKCLLIPGDVSDEAFCKDAV  115 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--------CeEEEEEccCCCHHHHHHHH
Confidence            467789999986654   3333455689999998764 23333333333222        24556677777766554433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+||.+--.
T Consensus       116 ~~i~~~~~~iD~lI~~Ag~  134 (290)
T PRK06701        116 EETVRELGRLDILVNNAAF  134 (290)
T ss_pred             HHHHHHcCCCCEEEECCcc
Confidence            21   22478998876543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=88.18  E-value=5.7  Score=30.05  Aligned_cols=82  Identities=13%  Similarity=0.090  Sum_probs=48.2

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++||=.|++.| +|..    +++.|++|+.+|.+...++.....+....      ...++.....|..+.+.+......
T Consensus         2 ~k~ilItG~~~~-IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~i~~~~~~   74 (259)
T PRK12384          2 NQVAVVIGGGQT-LGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY------GEGMAYGFGADATSEQSVLALSRG   74 (259)
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc------CCceeEEEEccCCCHHHHHHHHHH
Confidence            357888886543 4443    44568899999988765554444333211      012355667777766554433221


Q ss_pred             ---CCCCCcEEEEccc
Q 030274          151 ---YPGGFDLILGADI  163 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~  163 (180)
                         ..++.|+|+.+--
T Consensus        75 ~~~~~~~id~vv~~ag   90 (259)
T PRK12384         75 VDEIFGRVDLLVYNAG   90 (259)
T ss_pred             HHHHcCCCCEEEECCC
Confidence               2257899888763

>PRK07454 short chain dehydrogenase; Provisional

Probab=88.18  E-value=7.3  Score=29.09  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++|=.|+ +|.+|..++    +.|.+|++++.++...+.+...+...+        .++.+...|..+.+.......
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   75 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--------VKAAAYSIDLSNPEAIAPGIA   75 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--------CcEEEEEccCCCHHHHHHHHH
Confidence            3467888885 455555544    457899999998765555544443321        245566777777655443332


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+.-.
T Consensus        76 ~~~~~~~~id~lv~~ag~   93 (241)
T PRK07454         76 ELLEQFGCPDVLINNAGM   93 (241)
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            1   12468999987754

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=88.14  E-value=1.2  Score=34.55  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-------CeEEEecCCH
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRFC-------REVLLTDHNE  106 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-------~~V~~~D~~~  106 (180)
                      .|.+.--+.+...++|+|||-|.++..+++.-       ..++.+|-..
T Consensus         9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen    9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            34433333456689999999999999888742       5889999744

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=87.98  E-value=3.6  Score=33.44  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=24.4

Q ss_pred             CCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCCH
Q 030274           74 QASSILELGSGV-GV-TGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~~  106 (180)
                      ++.+||=+|||. |. ++..+++.| .+++.+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            567999999985 54 445677766 6888888754

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=87.92  E-value=3  Score=29.19  Aligned_cols=82  Identities=20%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             eEEEeCCcCCh---HHHHHhhcC-CeEEEecCC--HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           77 SILELGSGVGV---TGILCSRFC-REVLLTDHN--EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        77 ~vLdlG~G~G~---~~l~la~~~-~~V~~~D~~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      ++|=.|++.|+   ++..+++.| ..|+.+..+  .+..+.+...+...+        .++.+...|..+.+....+.. 
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~~   73 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--------AKITFIECDLSDPESIRALIEE   73 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--------SEEEEEESETTSHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--------cccccccccccccccccccccc
Confidence            56777877653   233344454 588888887  455555555555432        457778888887765554433 


Q ss_pred             --hCCCCCcEEEEcccccc
Q 030274          150 --KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~y~  166 (180)
                        ...++.|++|.+.-++.
T Consensus        74 ~~~~~~~ld~li~~ag~~~   92 (167)
T PF00106_consen   74 VIKRFGPLDILINNAGIFS   92 (167)
T ss_dssp             HHHHHSSESEEEEECSCTT
T ss_pred             ccccccccccccccccccc
Confidence              23468999998876554

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=87.90  E-value=3.4  Score=31.46  Aligned_cols=78  Identities=15%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++.| +|..    +++.|++|++++.+.+.++.++..   .+        .++.....+..+.+.......
T Consensus         4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---~~--------~~~~~~~~D~~~~~~~~~~~~   71 (262)
T TIGR03325         4 KGEVVLVTGGASG-LGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---HG--------DAVVGVEGDVRSLDDHKEAVA   71 (262)
T ss_pred             CCcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---cC--------CceEEEEeccCCHHHHHHHHH
Confidence            5678888888655 3443    445689999999887655444321   11        235556667766554433322


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|+++.+.-
T Consensus        72 ~~~~~~g~id~li~~Ag   88 (262)
T TIGR03325        72 RCVAAFGKIDCLIPNAG   88 (262)
T ss_pred             HHHHHhCCCCEEEECCC
Confidence            1   2257899888864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.83  E-value=2.4  Score=32.14  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=51.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH--
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI--  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  147 (180)
                      +.+.||=.||..|-+|-++++    .|..|++|--+.+-...+...   .          .+....+|....++....  
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~---~----------gl~~~kLDV~~~~~V~~v~~   72 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ---F----------GLKPYKLDVSKPEEVVTVSG   72 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh---h----------CCeeEEeccCChHHHHHHHH
Confidence            456899999999988888776    488999997665433333221   1          244778888887754433  


Q ss_pred             -Hhh-CCCCCcEEEEcc
Q 030274          148 -IQK-YPGGFDLILGAD  162 (180)
Q Consensus       148 -~~~-~~~~fD~Ii~~d  162 (180)
                       ... ..++.|+.+-|-
T Consensus        73 evr~~~~Gkld~L~NNA   89 (289)
T KOG1209|consen   73 EVRANPDGKLDLLYNNA   89 (289)
T ss_pred             HHhhCCCCceEEEEcCC
Confidence             223 567889988654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.63  E-value=1.6  Score=34.32  Aligned_cols=43  Identities=26%  Similarity=0.404  Sum_probs=34.2

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      .+|-=||+|+ | -++..+++.|.+|+..|.+++.++.++..+..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~   50 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEK   50 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH
Confidence            3788899997 4 46667778899999999999998887766544

>PRK07074 short chain dehydrogenase; Provisional

Probab=87.61  E-value=5.6  Score=30.05  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=48.2

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|=.|++.|+ |..    +++.|++|++++.++.-.+.....+  .+        .++.....+..+.+.+......
T Consensus         2 ~k~ilItGat~~i-G~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~--~~--------~~~~~~~~D~~~~~~~~~~~~~   70 (257)
T PRK07074          2 KRTALVTGAAGGI-GQALARRFLAAGDRVLALDIDAAALAAFADAL--GD--------ARFVPVACDLTDAASLAAALAN   70 (257)
T ss_pred             CCEEEEECCcchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cC--------CceEEEEecCCCHHHHHHHHHH
Confidence            3467888876653 444    4456889999998876554443333  11        2355677888777655433221


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..+++|+|+.+.-.
T Consensus        71 ~~~~~~~~d~vi~~ag~   87 (257)
T PRK07074         71 AAAERGPVDVLVANAGA   87 (257)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence               12468999988753

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.60  E-value=5.4  Score=30.53  Aligned_cols=84  Identities=17%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             CCCCeEEEeCC-cCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGS-GVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~-G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=-|+ |++-+|..++    +.|++|+.++.+....+.+++-....+         .......|..+.+....+
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~   74 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---------SELVFRCDVASDDEINQV   74 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---------CceEEECCCCCHHHHHHH
Confidence            35678999997 3444455544    568999988765433333333222211         123456777777666555


Q ss_pred             Hhh---CCCCCcEEEEccccc
Q 030274          148 IQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ...   ..++.|++|.|--+.
T Consensus        75 ~~~~~~~~g~iD~lVnnAG~~   95 (261)
T PRK08690         75 FADLGKHWDGLDGLVHSIGFA   95 (261)
T ss_pred             HHHHHHHhCCCcEEEECCccC
Confidence            432   235799999887543

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=87.53  E-value=1.5  Score=39.11  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ++|.=||+|+ | -++..+|..|.+|+..|.+++.++.++..+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~  358 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAK  358 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            4799999998 5 56667788899999999999998877766543

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=87.49  E-value=5.6  Score=30.12  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|++.| +|..+    ++.|++|+++|.+...++.+...+  .         .++.....|..+.+....+..
T Consensus         5 ~~~~vlItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~--~---------~~~~~~~~D~~~~~~~~~~~~   72 (257)
T PRK07067          5 QGKVALLTGAASG-IGEAVAERYLAEGARVVIADIKPARARLAALEI--G---------PAAIAVSLDVTRQDSIDRIVA   72 (257)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh--C---------CceEEEEccCCCHHHHHHHHH
Confidence            4678898886554 34444    446899999999876555443322  1         124556677776665544332


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+.-.
T Consensus        73 ~~~~~~~~id~li~~ag~   90 (257)
T PRK07067         73 AAVERFGGIDILFNNAAL   90 (257)
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            1   23478998877543

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=87.42  E-value=10  Score=28.50  Aligned_cols=83  Identities=23%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC--CchhhH
Q 030274           73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN--SDQINK  146 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~--~~~~~~  146 (180)
                      .++++||=.|+ +|.+|..++    +.|.+|++++.++..++.+...+...+       ..++.+...+...  .+.+..
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~d~~~~~~~~~~~   81 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-------GPQPAIIPLDLLTATPQNYQQ   81 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-------CCCceEEEecccCCCHHHHHH
Confidence            46788999996 444555444    457899999998876665555544332       1123344444432  122222


Q ss_pred             H---HhhCCCCCcEEEEccc
Q 030274          147 I---IQKYPGGFDLILGADI  163 (180)
Q Consensus       147 ~---~~~~~~~fD~Ii~~d~  163 (180)
                      +   .....++.|.|+.+--
T Consensus        82 ~~~~~~~~~~~id~vi~~Ag  101 (247)
T PRK08945         82 LADTIEEQFGRLDGVLHNAG  101 (247)
T ss_pred             HHHHHHHHhCCCCEEEECCc
Confidence            1   1122357899887753

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=87.38  E-value=2.2  Score=33.83  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCCe-EEEecCCHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCRE-VLLTDHNEEVLKILK  113 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~-V~~~D~~~~~l~~~~  113 (180)
                      ...++.+||=+|+|. |..++.+++ .|.+ |++++.+++-.+.++
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~  205 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK  205 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            344678899898865 666666665 4677 999999887666654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK06198 short chain dehydrogenase; Provisional

Probab=87.36  E-value=6.1  Score=29.89  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCe-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCRE-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=.|++.| +|..+    ++.|++ |++++.+++........+...        ..++.....+..+.+.+..+
T Consensus         4 ~~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~~D~~~~~~~~~~   74 (260)
T PRK06198          4 LDGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL--------GAKAVFVQADLSDVEDCRRV   74 (260)
T ss_pred             CCCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc--------CCeEEEEEccCCCHHHHHHH
Confidence            35678998887554 44443    345777 999998765544333333222        12355567777776554443


Q ss_pred             Hhh---CCCCCcEEEEccc
Q 030274          148 IQK---YPGGFDLILGADI  163 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~  163 (180)
                      ...   ..++.|+|+.+.-
T Consensus        75 ~~~~~~~~g~id~li~~ag   93 (260)
T PRK06198         75 VAAADEAFGRLDALVNAAG   93 (260)
T ss_pred             HHHHHHHhCCCCEEEECCC
Confidence            321   1246899888764

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.26  E-value=5.7  Score=29.63  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEe-cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLT-DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~-D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++|=.|+ +|.+|..++    +.|.+|+.+ +.++...+.+...+...+        .++.+...|..+.+.+....
T Consensus         4 ~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~   74 (247)
T PRK05565          4 MGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--------GDAIAVKADVSSEEDVENLV   74 (247)
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHH
Confidence            4567888886 455555444    457899998 888766655555544322        24667777887776554433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+|+.+.-.
T Consensus        75 ~~~~~~~~~id~vi~~ag~   93 (247)
T PRK05565         75 EQIVEKFGKIDILVNNAGI   93 (247)
T ss_pred             HHHHHHhCCCCEEEECCCc
Confidence            21   12468999987754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=87.24  E-value=1.1  Score=31.00  Aligned_cols=75  Identities=12%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             CCCCCeEEEeCCcC-Ch-HHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGV-GV-TGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~-G~-~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++||=+|+|- |. +...++..|. +|+.+.-+.+-.+.+.+.+....            +....|.+...     
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~------------~~~~~~~~~~~-----   71 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVN------------IEAIPLEDLEE-----   71 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCS------------EEEEEGGGHCH-----
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccc------------cceeeHHHHHH-----
Confidence            35788999999975 43 3334555564 69999988765555555442221            44455554321     


Q ss_pred             hhCCCCCcEEEEccccc
Q 030274          149 QKYPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y  165 (180)
                        ...++|+|+.+-+.-
T Consensus        72 --~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   72 --ALQEADIVINATPSG   86 (135)
T ss_dssp             --HHHTESEEEE-SSTT
T ss_pred             --HHhhCCeEEEecCCC
Confidence              124799999987753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=87.14  E-value=4.3  Score=32.78  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=25.4

Q ss_pred             CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274           74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~  106 (180)
                      .+++||=+|||. | .++..|++.| .+++.+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            667999999985 5 3555677777 5899999864

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=87.06  E-value=7.2  Score=29.54  Aligned_cols=82  Identities=10%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|+..|+   ++..+++.|++|+++|.+..  +...+.+...+        .++.....+..+.+.+..+..
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   77 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--------RRFLSLTADLRKIDGIPALLE   77 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence            367789999986553   22334456899999987542  22222232222        234556677776555544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+.-+
T Consensus        78 ~~~~~~~~~D~li~~Ag~   95 (253)
T PRK08993         78 RAVAEFGHIDILVNNAGL   95 (253)
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            1   23578999877643

>PRK07825 short chain dehydrogenase; Provisional

Probab=86.98  E-value=4.1  Score=31.20  Aligned_cols=77  Identities=13%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|++.|+ |..    +++.|.+|+.++.+++.++.+...+.            ++.+...|+.+.+.+.....
T Consensus         4 ~~~~ilVtGasggi-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------~~~~~~~D~~~~~~~~~~~~   70 (273)
T PRK07825          4 RGKVVAITGGARGI-GLATARALAALGARVAIGDLDEALAKETAAELG------------LVVGGPLDVTDPASFAAFLD   70 (273)
T ss_pred             CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------------cceEEEccCCCHHHHHHHHH
Confidence            46789988887654 443    44458899999988766554433322            13466778887665444332


Q ss_pred             ---hCCCCCcEEEEccc
Q 030274          150 ---KYPGGFDLILGADI  163 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~  163 (180)
                         ...+..|++|.+--
T Consensus        71 ~~~~~~~~id~li~~ag   87 (273)
T PRK07825         71 AVEADLGPIDVLVNNAG   87 (273)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence               12357899998764

>PRK07060 short chain dehydrogenase; Provisional

Probab=86.97  E-value=5.5  Score=29.75  Aligned_cols=76  Identities=20%  Similarity=0.275  Sum_probs=45.1

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++.| +|..    +++.|.+|++++.+++.++...+..   +          ......+..+.+.+.....
T Consensus         8 ~~~~~lItGa~g~-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~----------~~~~~~D~~~~~~v~~~~~   73 (245)
T PRK07060          8 SGKSVLVTGASSG-IGRACAVALAQRGARVVAAARNAAALDRLAGET---G----------CEPLRLDVGDDAAIRAALA   73 (245)
T ss_pred             CCCEEEEeCCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----------CeEEEecCCCHHHHHHHHH
Confidence            5678887776543 3433    3445889999998876544332221   1          2245667766544444433


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                      . .+++|+||.+.-.
T Consensus        74 ~-~~~~d~vi~~ag~   87 (245)
T PRK07060         74 A-AGAFDGLVNCAGI   87 (245)
T ss_pred             H-hCCCCEEEECCCC
Confidence            2 3478999988754

>PRK08628 short chain dehydrogenase; Provisional

Probab=86.92  E-value=8.3  Score=29.13  Aligned_cols=82  Identities=9%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|++.| +|..    +++.|++|+.++.++...+.. ..+...+        .++.+...|..+.+.+....
T Consensus         5 l~~~~ilItGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~~--------~~~~~~~~D~~~~~~~~~~~   74 (258)
T PRK08628          5 LKDKVVIVTGGASG-IGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRALQ--------PRAEFVQVDLTDDAQCRDAV   74 (258)
T ss_pred             cCCCEEEEeCCCCh-HHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhcC--------CceEEEEccCCCHHHHHHHH
Confidence            36778888887655 4444    445688999999877655332 3333222        24567778887766544433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|+|+.+.-.
T Consensus        75 ~~~~~~~~~id~vi~~ag~   93 (258)
T PRK08628         75 EQTVAKFGRIDGLVNNAGV   93 (258)
T ss_pred             HHHHHhcCCCCEEEECCcc
Confidence            21   22478998888753

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.67  E-value=5.6  Score=30.74  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=48.6

Q ss_pred             CCCCCeEEEeCCc-CChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           72 VLQASSILELGSG-VGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        72 ~~~~~~vLdlG~G-~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ...++++|=.|++ ++-+|..    +++.|++|+.+..+....+.+++..+..+         .......|..+.+....
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---------~~~~~~~Dl~~~~~v~~   77 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---------AFVAGHCDVTDEASIDA   77 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---------CceEEecCCCCHHHHHH
Confidence            3467789999986 2334444    44568999988765333333333222211         12345677777665555


Q ss_pred             HHhh---CCCCCcEEEEcccc
Q 030274          147 IIQK---YPGGFDLILGADIY  164 (180)
Q Consensus       147 ~~~~---~~~~fD~Ii~~d~~  164 (180)
                      +...   ..++.|++|.|--+
T Consensus        78 ~~~~~~~~~g~iD~lv~nAG~   98 (272)
T PRK08159         78 VFETLEKKWGKLDFVVHAIGF   98 (272)
T ss_pred             HHHHHHHhcCCCcEEEECCcc
Confidence            4332   23578999988644

>PRK12743 oxidoreductase; Provisional

Probab=86.61  E-value=10  Score=28.70  Aligned_cols=81  Identities=17%  Similarity=0.234  Sum_probs=48.6

Q ss_pred             CCeEEEeCCcCChHHHHHh----hcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           75 ASSILELGSGVGVTGILCS----RFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++||=.|++.| +|..++    +.|++|+.+.. +....+.+...+...+        .++.....|..+.+.+..+..
T Consensus         2 ~k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   72 (256)
T PRK12743          2 AQVAIVTASDSG-IGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--------VRAEIRQLDLSDLPEGAQALD   72 (256)
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHHH
Confidence            357888887655 455444    45889988753 4444555444444433        245667778777655444322


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|+|+.+.-.
T Consensus        73 ~~~~~~~~id~li~~ag~   90 (256)
T PRK12743         73 KLIQRLGRIDVLVNNAGA   90 (256)
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence               123578999988644

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=86.59  E-value=7.4  Score=29.95  Aligned_cols=83  Identities=19%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH--
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII--  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  148 (180)
                      +++.+|==|+.+|+   ++..+++.|++|+++.-..+.++.+...+.. +         .+....+|..+.+.+..+.  
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~---------~~~~~~~DVtD~~~~~~~i~~   74 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-G---------AALALALDVTDRAAVEAAIEA   74 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-C---------ceEEEeeccCCHHHHHHHHHH
Confidence            45678888888875   4445566799999999998888877766553 1         3557888888886644433  


Q ss_pred             -hhCCCCCcEEEEcccccc
Q 030274          149 -QKYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 -~~~~~~fD~Ii~~d~~y~  166 (180)
                       +...++.|+++.|-=++.
T Consensus        75 ~~~~~g~iDiLvNNAGl~~   93 (246)
T COG4221          75 LPEEFGRIDILVNNAGLAL   93 (246)
T ss_pred             HHHhhCcccEEEecCCCCc
Confidence             234568999998875554

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.57  E-value=7.3  Score=30.17  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             CCCeEEEeCCc--CCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSG--VGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G--~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++|=.|++  .|+   ++..+++.|++|+.++.+....+.+++..+..+        .. .....|..+.+....+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--------~~-~~~~~Dv~d~~~v~~~~   74 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--------SD-YVYELDVSKPEHFKSLA   74 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--------Cc-eEEEecCCCHHHHHHHH
Confidence            56789999985  332   333455568999999987543333332222221        11 24567777776555443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|++|.|--+
T Consensus        75 ~~i~~~~g~iDilVnnAG~   93 (274)
T PRK08415         75 ESLKKDLGKIDFIVHSVAF   93 (274)
T ss_pred             HHHHHHcCCCCEEEECCcc
Confidence            32   23679999888754

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=86.49  E-value=1  Score=39.03  Aligned_cols=50  Identities=16%  Similarity=0.013  Sum_probs=35.6

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCH
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNE  106 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~  106 (180)
                      .++..|.+.=.+..-+-++..||||||-.|.+..++++.   +.-|+++|+-|
T Consensus        27 RsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   27 RSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             HHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            345555544333322336778999999999999888874   57899999755

>PRK06484 short chain dehydrogenase; Validated

Probab=86.48  E-value=3.6  Score=34.83  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=.|++.|+   ++..+++.|++|++++.+.+.++.+.+.+   +        .++.....|..+.+.+..+...
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~~~~~~~~   72 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL---G--------PDHHALAMDVSDEAQIREGFEQ   72 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CceeEEEeccCCHHHHHHHHHH
Confidence            56789988987773   23334556899999998876555443332   1        1244567777776655544332


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..++.|++|.+--+
T Consensus        73 ~~~~~g~iD~li~nag~   89 (520)
T PRK06484         73 LHREFGRIDVLVNNAGV   89 (520)
T ss_pred             HHHHhCCCCEEEECCCc
Confidence               23579999988643

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=86.44  E-value=6.4  Score=32.35  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=47.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHH--HHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKI--LKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~--~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++||=.| |+|.+|..+++    .|.+|++++-++.-...  ........        ..++.+...|+.+.+.+...
T Consensus        59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--------~~~v~~v~~Dl~d~~~l~~~  129 (390)
T PLN02657         59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--------LPGAEVVFGDVTDADSLRKV  129 (390)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh--------cCCceEEEeeCCCHHHHHHH
Confidence            567899888 57888876664    47899999876532210  01111111        11356778888887666555


Q ss_pred             HhhCCCCCcEEEEc
Q 030274          148 IQKYPGGFDLILGA  161 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~  161 (180)
                      .......+|+|+.+
T Consensus       130 ~~~~~~~~D~Vi~~  143 (390)
T PLN02657        130 LFSEGDPVDVVVSC  143 (390)
T ss_pred             HHHhCCCCcEEEEC
Confidence            43222268999854

>PRK08324 short chain dehydrogenase; Validated

Probab=86.42  E-value=6.8  Score=34.70  Aligned_cols=82  Identities=16%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++.| +|..    +++.|++|+++|.++..++.+...+...         .++.....+..+.+.+....
T Consensus       420 l~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---------~~v~~v~~Dvtd~~~v~~~~  489 (681)
T PRK08324        420 LAGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---------DRALGVACDVTDEAAVQAAF  489 (681)
T ss_pred             CCCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---------CcEEEEEecCCCHHHHHHHH
Confidence            46788998887544 3443    4445889999999887665554433221         13556677777765544433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+|+.+--+
T Consensus       490 ~~~~~~~g~iDvvI~~AG~  508 (681)
T PRK08324        490 EEAALAFGGVDIVVSNAGI  508 (681)
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            21   23478999887653

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=86.37  E-value=5.2  Score=32.47  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=50.2

Q ss_pred             CCCCCCeEEEeCCcC--ChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGV--GVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~--G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...++++||=+|+++  |...+.+|+. +...+.+-.+.+.++.+++.    +.           ...++|.+.+-.+..
T Consensus       154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GA-----------d~vvdy~~~~~~e~~  218 (347)
T KOG1198|consen  154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GA-----------DEVVDYKDENVVELI  218 (347)
T ss_pred             ccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CC-----------cEeecCCCHHHHHHH
Confidence            455778999999876  5666777775 44667777778877777754    20           355677775544444


Q ss_pred             HhhCCCCCcEEEEcc
Q 030274          148 IQKYPGGFDLILGAD  162 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d  162 (180)
                      .+.....||+|+-+=
T Consensus       219 kk~~~~~~DvVlD~v  233 (347)
T KOG1198|consen  219 KKYTGKGVDVVLDCV  233 (347)
T ss_pred             HhhcCCCccEEEECC
Confidence            333356799988543

>PRK06114 short chain dehydrogenase; Provisional

Probab=86.26  E-value=11  Score=28.55  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHH-HHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEE-VLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=.|++.| +|..++    +.|++|+.++.+.. .++.+.+.+...+        .++.....|..+.+.+...
T Consensus         6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~i~~~   76 (254)
T PRK06114          6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--------RRAIQIAADVTSKADLRAA   76 (254)
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHH
Confidence            36778998886655 444444    45889999997642 3344444443322        2355667777776554443


Q ss_pred             Hh---hCCCCCcEEEEccccc
Q 030274          148 IQ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~~---~~~~~fD~Ii~~d~~y  165 (180)
                      ..   ...++.|++|.+.-+.
T Consensus        77 ~~~~~~~~g~id~li~~ag~~   97 (254)
T PRK06114         77 VARTEAELGALTLAVNAAGIA   97 (254)
T ss_pred             HHHHHHHcCCCCEEEECCCCC
Confidence            32   2235789999887543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=86.23  E-value=2.4  Score=34.28  Aligned_cols=44  Identities=25%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=.|+|. |..++.+|+. |. +|+++|.+++-++.+++
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence            344677888899875 6666666664 66 69999999887776654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK05993 short chain dehydrogenase; Provisional

Probab=86.10  E-value=4.8  Score=31.02  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=46.2

Q ss_pred             CCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           75 ASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      +++||=.|++.| +|..+    ++.|.+|++++.+++.++.++.    .+          +.....|..+.+.+..+.. 
T Consensus         4 ~k~vlItGasgg-iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~----------~~~~~~Dl~d~~~~~~~~~~   68 (277)
T PRK05993          4 KRSILITGCSSG-IGAYCARALQSDGWRVFATCRKEEDVAALEA----EG----------LEAFQLDYAEPESIAALVAQ   68 (277)
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----------ceEEEccCCCHHHHHHHHHH
Confidence            457888887544 44444    4458999999998766554332    12          4456777776655444332 


Q ss_pred             ---hCCCCCcEEEEccc
Q 030274          150 ---KYPGGFDLILGADI  163 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~  163 (180)
                         ...+..|+++.+--
T Consensus        69 ~~~~~~g~id~li~~Ag   85 (277)
T PRK05993         69 VLELSGGRLDALFNNGA   85 (277)
T ss_pred             HHHHcCCCccEEEECCC
Confidence               22357899998754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=86.08  E-value=2.9  Score=31.64  Aligned_cols=69  Identities=20%  Similarity=0.228  Sum_probs=40.9

Q ss_pred             eEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHH-HHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           77 SILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKK-NIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        77 ~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~-n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      +++=+|||. | .++-.|++.|..|+++|.+++.++.... ...             ..+...+-.+.+.+   .+..-.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~-------------~~~v~gd~t~~~~L---~~agi~   65 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD-------------THVVIGDATDEDVL---EEAGID   65 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc-------------eEEEEecCCCHHHH---HhcCCC
Confidence            566778876 4 3444566678999999999986655322 211             22444444433332   222456


Q ss_pred             CCcEEEEc
Q 030274          154 GFDLILGA  161 (180)
Q Consensus       154 ~fD~Ii~~  161 (180)
                      .+|++++.
T Consensus        66 ~aD~vva~   73 (225)
T COG0569          66 DADAVVAA   73 (225)
T ss_pred             cCCEEEEe
Confidence            88887765

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=85.88  E-value=2.9  Score=31.49  Aligned_cols=67  Identities=18%  Similarity=0.306  Sum_probs=42.0

Q ss_pred             HHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh----CCCCCcEEEEcccc
Q 030274           89 GILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK----YPGGFDLILGADIY  164 (180)
Q Consensus        89 ~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fD~Ii~~d~~  164 (180)
                      +..+++.|++|+.++.+.+.++..-+.+....         ...+...|..+.+.+..+...    ..++.|++|.+--.
T Consensus        13 a~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~   83 (241)
T PF13561_consen   13 ARALAEEGANVILTDRNEEKLADALEELAKEY---------GAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGI   83 (241)
T ss_dssp             HHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT---------TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEES
T ss_pred             HHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc---------CCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccc
Confidence            33455569999999999987554444444432         122577777766655554332    23789998876543

...

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.78  E-value=5.9  Score=30.25  Aligned_cols=84  Identities=7%  Similarity=0.039  Sum_probs=47.6

Q ss_pred             CCCeEEEeCCcC-ChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGV-GVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++|=.|++. +-+|..    +++.|++|+.++.+....+.+++-.+...       ..++.....|..+.+....+.
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~   78 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-------GQESLLLPCDVTSDEEITACF   78 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-------CCceEEEecCCCCHHHHHHHH
Confidence            578899999862 334444    44568999998754221122222111111       123556677887776655544


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+++.|--+
T Consensus        79 ~~~~~~~g~ld~lv~nag~   97 (257)
T PRK08594         79 ETIKEEVGVIHGVAHCIAF   97 (257)
T ss_pred             HHHHHhCCCccEEEECccc
Confidence            32   23689998876543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=85.73  E-value=2  Score=28.40  Aligned_cols=63  Identities=14%  Similarity=0.113  Sum_probs=36.9

Q ss_pred             CcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEE
Q 030274           83 SGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLI  158 (180)
Q Consensus        83 ~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I  158 (180)
                      ||.|..|..+++.    +.+|+.+|.+++.++.++..    +          +.+...+..+.+.+   .+....+.+.|
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----------~~~i~gd~~~~~~l---~~a~i~~a~~v   66 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----------VEVIYGDATDPEVL---ERAGIEKADAV   66 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----------SEEEES-TTSHHHH---HHTTGGCESEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----------cccccccchhhhHH---hhcCccccCEE
Confidence            5666677766652    45899999999887776643    1          23455555444332   22244577776


Q ss_pred             EEcc
Q 030274          159 LGAD  162 (180)
Q Consensus       159 i~~d  162 (180)
                      ++.-
T Consensus        67 v~~~   70 (116)
T PF02254_consen   67 VILT   70 (116)
T ss_dssp             EEES
T ss_pred             EEcc
Confidence            6653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=85.67  E-value=7.3  Score=30.53  Aligned_cols=45  Identities=13%  Similarity=0.081  Sum_probs=32.1

Q ss_pred             CCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           70 PDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ....++.+||=.|+  |.|..++.+|+ .|.+|++++.+++-.+.+++
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~  186 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE  186 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            33446788988884  33767776776 47899999988876666654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK07201 short chain dehydrogenase; Provisional

Probab=85.65  E-value=9.2  Score=33.40  Aligned_cols=82  Identities=17%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|++.| +|..    +++.|++|++++.+++.++.+...+...+        .++.+...|..+.+.......
T Consensus       370 ~~k~vlItGas~g-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~  440 (657)
T PRK07201        370 VGKVVLITGASSG-IGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--------GTAHAYTCDLTDSAAVDHTVK  440 (657)
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHHH
Confidence            4678888887655 3444    44568999999998876666555544332        246667778887765554432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...+..|+++.+--+
T Consensus       441 ~~~~~~g~id~li~~Ag~  458 (657)
T PRK07201        441 DILAEHGHVDYLVNNAGR  458 (657)
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence               123478999987653

>TIGR00518 alaDH alanine dehydrogenase

Probab=85.65  E-value=2.9  Score=34.20  Aligned_cols=40  Identities=23%  Similarity=0.364  Sum_probs=28.5

Q ss_pred             CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           74 QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      ++.+|+=+|+|. |..++..++ .|.+|+.+|.+++.++.+.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~  207 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLD  207 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence            456799999885 665555444 5789999999876655443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08328 hypothetical protein; Provisional

Probab=85.56  E-value=6.8  Score=29.78  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=24.5

Q ss_pred             CCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCCH
Q 030274           74 QASSILELGSGV-GV-TGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~~  106 (180)
                      .+.+|+=+|||. |. ++..+++.| .+++.+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            567899999985 63 455677776 6899999654

>PRK05717 oxidoreductase; Validated

Probab=85.53  E-value=3.6  Score=31.20  Aligned_cols=81  Identities=15%  Similarity=0.134  Sum_probs=47.7

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++||=.|++.| +|..    +++.|++|+.+|.++.-.+...+.+   +        .++.....|..+.+.+..+.
T Consensus         8 ~~~k~vlItG~sg~-IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---~--------~~~~~~~~Dl~~~~~~~~~~   75 (255)
T PRK05717          8 HNGRVALVTGAARG-IGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---G--------ENAWFIAMDVADEAQVAAGV   75 (255)
T ss_pred             cCCCEEEEeCCcch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---C--------CceEEEEccCCCHHHHHHHH
Confidence            46778998887544 3444    4445889999998765333322221   1        13456677777665543322


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..+++|+++.+--+.
T Consensus        76 ~~~~~~~g~id~li~~ag~~   95 (255)
T PRK05717         76 AEVLGQFGRLDALVCNAAIA   95 (255)
T ss_pred             HHHHHHhCCCCEEEECCCcc
Confidence            21   234789999887543

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=85.50  E-value=13  Score=27.95  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=42.4

Q ss_pred             ceecchH-HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHH
Q 030274           53 QLVWPGA-MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILK  113 (180)
Q Consensus        53 ~~~w~~~-~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~  113 (180)
                      .+.|+.- -.|+..+.+-   ....++.+||=||+-+|...-.++.- + ..++++++++.....+-
T Consensus        51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl  117 (231)
T COG1889          51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL  117 (231)
T ss_pred             eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence            5678654 3555555432   33557889999999999877776664 3 58999999996554443

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=85.43  E-value=2.6  Score=34.10  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             CCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHH
Q 030274           72 VLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKK  114 (180)
Q Consensus        72 ~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~  114 (180)
                      ..++.+|.=+|||. |+.++.-|+. | .+++++|+++.-+++|++
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~  228 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK  228 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence            34778999999976 9988887775 3 599999999998888875

>PRK12828 short chain dehydrogenase; Provisional

Probab=85.39  E-value=11  Score=27.80  Aligned_cols=79  Identities=13%  Similarity=0.129  Sum_probs=46.0

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=.|++ |.+|..++    +.|++|++++.++.-.......+...          ...+...++.+.+.+.....
T Consensus         6 ~~k~vlItGat-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~   74 (239)
T PRK12828          6 QGKVVAITGGF-GGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD----------ALRIGGIDLVDPQAARRAVD   74 (239)
T ss_pred             CCCEEEEECCC-CcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----------CceEEEeecCCHHHHHHHHH
Confidence            56788888865 44454443    45889999998765433322222222          13456677777655444332


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|+|+.+..
T Consensus        75 ~~~~~~~~~d~vi~~ag   91 (239)
T PRK12828         75 EVNRQFGRLDALVNIAG   91 (239)
T ss_pred             HHHHHhCCcCEEEECCc
Confidence            1   2347899887654

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=85.39  E-value=8  Score=30.56  Aligned_cols=83  Identities=11%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             CCeEEEeCCcCCh---HHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGSGVGV---TGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~---~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|=.|++.|+   ++..+++.| .+|+.++.++...+.+.+.+...        ..++.....|..+.+....+...
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~--------~~~~~~~~~Dl~~~~~v~~~~~~   74 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMP--------KDSYTIMHLDLGSLDSVRQFVQQ   74 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCC--------CCeEEEEEcCCCCHHHHHHHHHH
Confidence            4578888876654   222344568 89999988776555444433211        12455667788777655444322


Q ss_pred             ---CCCCCcEEEEccccc
Q 030274          151 ---YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~y  165 (180)
                         ..++.|++|.+--++
T Consensus        75 ~~~~~~~iD~lI~nAG~~   92 (314)
T TIGR01289        75 FRESGRPLDALVCNAAVY   92 (314)
T ss_pred             HHHhCCCCCEEEECCCcc
Confidence               235789999887543

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08278 short chain dehydrogenase; Provisional

Probab=85.37  E-value=9.9  Score=29.23  Aligned_cols=82  Identities=16%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHH-------HHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEV-------LKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +++++|=.|++.|+ |..    +++.|.+|++++.+...       ++.+.+.+...+        .++.....|..+.+
T Consensus         5 ~~k~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~D~~~~~   75 (273)
T PRK08278          5 SGKTLFITGASRGI-GLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--------GQALPLVGDVRDED   75 (273)
T ss_pred             CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC--------CceEEEEecCCCHH
Confidence            56789988886653 443    44568899999876431       222222232222        24556777887776


Q ss_pred             hhhHHHhh---CCCCCcEEEEcccc
Q 030274          143 QINKIIQK---YPGGFDLILGADIY  164 (180)
Q Consensus       143 ~~~~~~~~---~~~~fD~Ii~~d~~  164 (180)
                      .+..+...   ..+++|+|+.+--+
T Consensus        76 ~i~~~~~~~~~~~g~id~li~~ag~  100 (273)
T PRK08278         76 QVAAAVAKAVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            55544321   22479999887643

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.35  E-value=2.4  Score=33.21  Aligned_cols=42  Identities=24%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      .+|.=||+|+ | .++..+++.|.+|++.|.+++.++.++.+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~   47 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA   47 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence            3677888886 4 4555666778999999999998888876653

>PRK06841 short chain dehydrogenase; Provisional

Probab=85.21  E-value=8.1  Score=29.10  Aligned_cols=80  Identities=14%  Similarity=0.166  Sum_probs=48.0

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .+++||=.|++.|+   ++..+++.|++|++++.++...+.+..   ..+        .++.....|..+.+.+..+...
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~---~~~--------~~~~~~~~Dl~~~~~~~~~~~~   82 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQ---LLG--------GNAKGLVCDVSDSQSVEAAVAA   82 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hhC--------CceEEEEecCCCHHHHHHHHHH
Confidence            57789999886654   223345568999999988754332221   111        2344667777766555443321


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..+++|+++.+--+
T Consensus        83 ~~~~~~~~d~vi~~ag~   99 (255)
T PRK06841         83 VISAFGRIDILVNSAGV   99 (255)
T ss_pred             HHHHhCCCCEEEECCCC
Confidence               23478998887754

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=85.07  E-value=6.9  Score=32.05  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             CCCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCC
Q 030274           73 LQASSILELGSGV-GV-TGILCSRFC-REVLLTDHN  105 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~  105 (180)
                      ..+.+||=+|||. |. ++..+++.| .+++.+|.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3667999999985 53 444666766 689999976

>PRK06484 short chain dehydrogenase; Validated

Probab=85.06  E-value=4.9  Score=34.05  Aligned_cols=80  Identities=11%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=.|++.|+   ++..+++.|++|+.++.++..++.+.+.+   +        .+......|..+.+....+...
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~~~~~~~~  336 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G--------DEHLSVQADITDEAAVESAFAQ  336 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CceeEEEccCCCHHHHHHHHHH
Confidence            56788888887663   23334556899999999876665554322   1        1234566777776655444322


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..++.|++|.|--+
T Consensus       337 ~~~~~g~id~li~nAg~  353 (520)
T PRK06484        337 IQARWGRLDVLVNNAGI  353 (520)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence               23579999987644

>PRK06914 short chain dehydrogenase; Provisional

Probab=85.05  E-value=9.3  Score=29.30  Aligned_cols=83  Identities=20%  Similarity=0.256  Sum_probs=49.1

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      ++++|=.|++.|+ |..    +++.|++|++++-++..++.....+...+      ...++.+...|..+.+.+..+.. 
T Consensus         3 ~k~~lItGasg~i-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~   75 (280)
T PRK06914          3 KKIAIVTGASSGF-GLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN------LQQNIKVQQLDVTDQNSIHNFQLV   75 (280)
T ss_pred             CCEEEEECCCchH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCceeEEecCCCCHHHHHHHHHH
Confidence            4578888865543 443    34458999999988766655544433322      01246667778877665443111 


Q ss_pred             -hCCCCCcEEEEcccc
Q 030274          150 -KYPGGFDLILGADIY  164 (180)
Q Consensus       150 -~~~~~fD~Ii~~d~~  164 (180)
                       ...++.|+|+.+.-.
T Consensus        76 ~~~~~~id~vv~~ag~   91 (280)
T PRK06914         76 LKEIGRIDLLVNNAGY   91 (280)
T ss_pred             HHhcCCeeEEEECCcc
Confidence             122468998887643

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=85.02  E-value=2.9  Score=33.58  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=.|||. |..++.+|+. |. +|+++|.++.-.+.+++
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~  219 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE  219 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            344678999999865 6666667764 66 59999998887777653

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=84.99  E-value=13  Score=27.59  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=48.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++||=.|+ +|.+|..+++    .|.+|++++-++...+.....+...+        .++.....|..+.+.+.....
T Consensus         4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   74 (246)
T PRK05653          4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--------GEARVLVFDVSDEAAVRALIE   74 (246)
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHHH
Confidence            4568888886 5666665543    57899999998765554444443322        235555667766654443322


Q ss_pred             h---CCCCCcEEEEcc
Q 030274          150 K---YPGGFDLILGAD  162 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d  162 (180)
                      .   ..++.|.|+-+-
T Consensus        75 ~~~~~~~~id~vi~~a   90 (246)
T PRK05653         75 AAVEAFGALDILVNNA   90 (246)
T ss_pred             HHHHHhCCCCEEEECC
Confidence            1   124679888765

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=84.89  E-value=2.5  Score=33.14  Aligned_cols=42  Identities=36%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ++|.=+|+|. | .++..+++.|.+|++.|.+++.++.+++.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~   47 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE   47 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence            4678889986 5 4566677778999999999998887665443

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.84  E-value=12  Score=28.49  Aligned_cols=82  Identities=22%  Similarity=0.235  Sum_probs=48.0

Q ss_pred             CCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++.+|=-|++.  |+   ++..+++.|++|+.++.++...+.+++..+..+         .......|..+.+....+.
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---------~~~~~~~Dv~~~~~v~~~~   77 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---------CNFVSELDVTNPKSISNLF   77 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---------CceEEEccCCCHHHHHHHH
Confidence            567889899865  42   334456678999998876433333333222211         1123467777776655544


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|+++.+--+
T Consensus        78 ~~~~~~~g~iDilVnnag~   96 (260)
T PRK06603         78 DDIKEKWGSFDFLLHGMAF   96 (260)
T ss_pred             HHHHHHcCCccEEEEcccc
Confidence            32   23579998887643

>PRK05855 short chain dehydrogenase; Validated

Probab=84.73  E-value=17  Score=31.00  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+.++|=.|+..| +|..    +++.|.+|+.++.+...++.+...+...+        .++.....|..+.+....+.
T Consensus       313 ~~~~~~lv~G~s~g-iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~  383 (582)
T PRK05855        313 FSGKLVVVTGAGSG-IGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--------AVAHAYRVDVSDADAMEAFA  383 (582)
T ss_pred             CCCCEEEEECCcCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEcCCCCHHHHHHHH
Confidence            35567888887554 3443    44568899999998876666555554432        23556777777766554443


Q ss_pred             h---hCCCCCcEEEEccccc
Q 030274          149 Q---KYPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~y  165 (180)
                      .   ...++.|+++.+--+.
T Consensus       384 ~~~~~~~g~id~lv~~Ag~~  403 (582)
T PRK05855        384 EWVRAEHGVPDIVVNNAGIG  403 (582)
T ss_pred             HHHHHhcCCCcEEEECCccC
Confidence            2   2235789999887553

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=84.72  E-value=8.9  Score=28.37  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=23.4

Q ss_pred             CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274           74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~  106 (180)
                      .+.+||=+|||. | -++..+++.| .+++.+|.+.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            567899999986 4 3444566666 6899998653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=84.42  E-value=5.8  Score=32.44  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=25.0

Q ss_pred             CCCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCC
Q 030274           73 LQASSILELGSGV-GV-TGILCSRFC-REVLLTDHN  105 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~  105 (180)
                      ..+.+||=+|||. |. ++..|++.| .+++.+|.+
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3667999999984 53 555677777 589999987

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=84.32  E-value=11  Score=26.05  Aligned_cols=43  Identities=19%  Similarity=0.325  Sum_probs=27.3

Q ss_pred             CCCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCHHHHHHHHHH
Q 030274           73 LQASSILELGSGV-G-VTGILCSRFC-REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~~~l~~~~~n  115 (180)
                      .++++|+=+|+|. | .....+++.+ .+|+.+|.+++..+.+.+.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~   62 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER   62 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence            4678999999863 2 2222333444 6899999987655554443

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK05884 short chain dehydrogenase; Provisional

Probab=84.25  E-value=6  Score=29.51  Aligned_cols=73  Identities=12%  Similarity=0.174  Sum_probs=42.0

Q ss_pred             eEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           77 SILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++|=.|++.|+   +...+++.|.+|+.++.+++-++.+.+.+   +          +.....|..+.+.+..+......
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~---~----------~~~~~~D~~~~~~v~~~~~~~~~   68 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL---D----------VDAIVCDNTDPASLEEARGLFPH   68 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c----------CcEEecCCCCHHHHHHHHHHHhh
Confidence            46667775553   22234456889999998876554433221   1          22455666665555544433334


Q ss_pred             CCcEEEEcc
Q 030274          154 GFDLILGAD  162 (180)
Q Consensus       154 ~fD~Ii~~d  162 (180)
                      ++|+++.+.
T Consensus        69 ~id~lv~~a   77 (223)
T PRK05884         69 HLDTIVNVP   77 (223)
T ss_pred             cCcEEEECC
Confidence            689988764

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=84.19  E-value=16  Score=27.67  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC-HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN-EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++++|=.|++.|+   ++..+++.|++|+.+..+ +...+.+...+...+        .++.....|..+.+.+..+.
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~i~~~~   76 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAG--------GEAIAVKGDVTVESDVVNLI   76 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--------CeEEEEEecCCCHHHHHHHH
Confidence            467889988887764   222344568888877653 344444444444332        23556677777766544433


Q ss_pred             h---hCCCCCcEEEEccc
Q 030274          149 Q---KYPGGFDLILGADI  163 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~  163 (180)
                      .   ...++.|+++.+--
T Consensus        77 ~~~~~~~g~id~lv~~ag   94 (261)
T PRK08936         77 QTAVKEFGTLDVMINNAG   94 (261)
T ss_pred             HHHHHHcCCCCEEEECCC
Confidence            2   12357899887764

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=84.18  E-value=17  Score=30.10  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=51.9

Q ss_pred             HHHHHhhCCCC-CCCCeEEEeCCcCCh--H---HHHHhhcCCeEEEecCCHHHHH------------HHHHHHHHhcCCC
Q 030274           62 MNDYLSKNPDV-LQASSILELGSGVGV--T---GILCSRFCREVLLTDHNEEVLK------------ILKKNIEHHTSSE  123 (180)
Q Consensus        62 l~~~l~~~~~~-~~~~~vLdlG~G~G~--~---~l~la~~~~~V~~~D~~~~~l~------------~~~~n~~~n~~~~  123 (180)
                      ..+|+.+.... ..++++|=.|+.+|+  .   +..+ +.|++|+++++.....+            ..++.++..+   
T Consensus        27 qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G---  102 (398)
T PRK13656         27 QIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAG---  102 (398)
T ss_pred             HHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcC---
Confidence            34566655443 456899999998764  2   3344 56899999986432211            1222223222   


Q ss_pred             CCCCCCcEEEEEeecCCCchhhHHHh---hCCCCCcEEEEccc
Q 030274          124 NPNSDAGLAVAKLEWGNSDQINKIIQ---KYPGGFDLILGADI  163 (180)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~Ii~~d~  163 (180)
                           ..+...+.|..+.+....+..   ...++.|++|-|--
T Consensus       103 -----~~a~~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA  140 (398)
T PRK13656        103 -----LYAKSINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLA  140 (398)
T ss_pred             -----CceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence                 123345667666654443322   23367999886653

>cd08293 PTGR2 Prostaglandin reductase

Probab=84.15  E-value=10  Score=29.96  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=29.2

Q ss_pred             CeEEEeCC-c-CChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           76 SSILELGS-G-VGVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        76 ~~vLdlG~-G-~G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      .+||=.|+ | .|..++.+|+. |. +|++++.+++-.+.+++
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~  198 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS  198 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            78988886 3 47777777764 76 89999998876666554

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.10  E-value=3  Score=37.15  Aligned_cols=43  Identities=19%  Similarity=0.159  Sum_probs=34.5

Q ss_pred             CeEEEeCCcC-C-hHHHHHh-hcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCS-RFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ++|.=||+|+ | -++..++ ..|.+|+..|.+++.++.++.++..
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~  355 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWD  355 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            5799999998 5 4555666 6799999999999988888766654

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.09  E-value=12  Score=28.83  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=48.8

Q ss_pred             CCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++|=.|++.  |+   ++..+++.|++|+.++.+....+.+++ +....        ..+.....|..+.+.+..+.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--------~~~~~~~~Dl~~~~~v~~~~   75 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--------GSDIVLPCDVAEDASIDAMF   75 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--------CCceEeecCCCCHHHHHHHH
Confidence            567899999875  32   344555668999999876432222222 21111        12335667777776655544


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..+++|++|.|--++
T Consensus        76 ~~~~~~~g~iD~linnAg~~   95 (262)
T PRK07984         76 AELGKVWPKFDGFVHSIGFA   95 (262)
T ss_pred             HHHHhhcCCCCEEEECCccC
Confidence            32   235789999887543

>PRK07806 short chain dehydrogenase; Provisional

Probab=84.07  E-value=12  Score=27.98  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCH-HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNE-EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++|=.|+..| +|..++    +.|.+|++++.+. ...+.+...++..+        .++.....|..+.+......
T Consensus         5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~   75 (248)
T PRK07806          5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--------GRASAVGADLTDEESVAALM   75 (248)
T ss_pred             CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHH
Confidence            5678998987544 444443    4578999887653 23333333333221        23556677777766554433


Q ss_pred             hh---CCCCCcEEEEcc
Q 030274          149 QK---YPGGFDLILGAD  162 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d  162 (180)
                      ..   ..+..|+++.+-
T Consensus        76 ~~~~~~~~~~d~vi~~a   92 (248)
T PRK07806         76 DTAREEFGGLDALVLNA   92 (248)
T ss_pred             HHHHHhCCCCcEEEECC
Confidence            21   224689887665

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=84.00  E-value=3  Score=33.28  Aligned_cols=44  Identities=25%  Similarity=0.324  Sum_probs=34.4

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ++|-=+|+|+ | -++..+|..|..|+..|.++++++.++..+..+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~   49 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKN   49 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHH
Confidence            4788899998 4 466666776699999999999888877666554

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=83.95  E-value=2.3  Score=36.29  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=33.2

Q ss_pred             CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           74 QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ++.+|+=+|+|. |+.++.+++ +|+.|+++|.++..++.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            567999999997 888776665 58899999999987666654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=83.95  E-value=2.6  Score=37.60  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=35.3

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ++|-=||+|+ | -++..+|..|.+|+..|.+++.++.+++++..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~  358 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAK  358 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            4789999998 4 56667788899999999999998887766654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=83.80  E-value=5.6  Score=32.47  Aligned_cols=82  Identities=18%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             EEEeCCcCChHHHHHhh----cC-C-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           78 ILELGSGVGVTGILCSR----FC-R-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        78 vLdlG~G~G~~~l~la~----~~-~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      |+=|||  |.+|-.+++    .. . +|+..|.+.+.++...+.+  .        ..++....++..+.+.+..+.   
T Consensus         1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~--------~~~~~~~~~d~~~~~~l~~~~---   65 (386)
T PF03435_consen    1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L--------GDRVEAVQVDVNDPESLAELL---   65 (386)
T ss_dssp             EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T--------TTTEEEEE--TTTHHHHHHHH---
T ss_pred             CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c--------ccceeEEEEecCCHHHHHHHH---
Confidence            566888  555554443    33 3 8999999988666555433  1        235778888888776655543   


Q ss_pred             CCCCcEEEEccccccCCchhhHHHHH
Q 030274          152 PGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                       ...|+||.+-+-|  ....+++.++
T Consensus        66 -~~~dvVin~~gp~--~~~~v~~~~i   88 (386)
T PF03435_consen   66 -RGCDVVINCAGPF--FGEPVARACI   88 (386)
T ss_dssp             -TTSSEEEE-SSGG--GHHHHHHHHH
T ss_pred             -hcCCEEEECCccc--hhHHHHHHHH
Confidence             4569999665444  2334444444

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=83.68  E-value=4.2  Score=31.94  Aligned_cols=43  Identities=26%  Similarity=0.441  Sum_probs=31.8

Q ss_pred             CCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           72 VLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        72 ~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...+.+||-.|+|. |...+.+|+ .|.+|++++.++...+.+++
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            44667888888763 666666666 47889999999887776644

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.65  E-value=12  Score=28.44  Aligned_cols=85  Identities=12%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             CCCCeEEEeCCcC-ChHHH----HHhhcCCeEEEecCC-----------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           73 LQASSILELGSGV-GVTGI----LCSRFCREVLLTDHN-----------EEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l----~la~~~~~V~~~D~~-----------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      .+++++|=.|++. +.+|.    .+++.|++|+.++.+           ........+.++..+        .++.....
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~   75 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG--------VKVSSMEL   75 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcC--------CeEEEEEc
Confidence            4678999999862 23344    444568899887521           112223334444332        24556677


Q ss_pred             ecCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          137 EWGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       137 ~~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      |..+.+.+..+...   ..+..|++|.+.-+.
T Consensus        76 D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~  107 (256)
T PRK12859         76 DLTQNDAPKELLNKVTEQLGYPHILVNNAAYS  107 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            77777655544322   234689999887543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.59  E-value=8.7  Score=32.34  Aligned_cols=48  Identities=19%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             CCCCeEEEeCCcC-ChHHH-HHhhcCCeEEEecCCHH-HHHHHHHHHHHhc
Q 030274           73 LQASSILELGSGV-GVTGI-LCSRFCREVLLTDHNEE-VLKILKKNIEHHT  120 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l-~la~~~~~V~~~D~~~~-~l~~~~~n~~~n~  120 (180)
                      ..+++|+=+|+|. |+... .+++.|.+|+++|.++. ......+.++..+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g   64 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG   64 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC
Confidence            3567899999875 64322 44556899999996543 3333344455554

>PRK07832 short chain dehydrogenase; Provisional

Probab=83.47  E-value=14  Score=28.23  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             eEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---
Q 030274           77 SILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ---  149 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (180)
                      ++|=.|++.| +|..    +++.|++|++++.+++.++.+...+...+       .........|..+.+....+..   
T Consensus         2 ~vlItGas~g-iG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~   73 (272)
T PRK07832          2 RCFVTGAASG-IGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-------GTVPEHRALDISDYDAVAAFAADIH   73 (272)
T ss_pred             EEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CCcceEEEeeCCCHHHHHHHHHHHH
Confidence            4666676544 3443    44568899999988776655544444322       0112234567776554443322   


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                      ...++.|+++.+--.
T Consensus        74 ~~~~~id~lv~~ag~   88 (272)
T PRK07832         74 AAHGSMDVVMNIAGI   88 (272)
T ss_pred             HhcCCCCEEEECCCC
Confidence            123568999887643

>PRK06180 short chain dehydrogenase; Provisional

Probab=83.43  E-value=6.4  Score=30.29  Aligned_cols=78  Identities=18%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|=.|++.|+ |..    +++.|.+|++++.++..++.+...   ++        .++.....+..+.+.+......
T Consensus         4 ~~~vlVtGasggi-G~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~~--------~~~~~~~~D~~d~~~~~~~~~~   71 (277)
T PRK06180          4 MKTWLITGVSSGF-GRALAQAALAAGHRVVGTVRSEAARADFEAL---HP--------DRALARLLDVTDFDAIDAVVAD   71 (277)
T ss_pred             CCEEEEecCCChH-HHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---cC--------CCeeEEEccCCCHHHHHHHHHH
Confidence            4678888886653 443    344588999999987655433221   11        2355667777776655443321


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..+.+|+|+.+--.
T Consensus        72 ~~~~~~~~d~vv~~ag~   88 (277)
T PRK06180         72 AEATFGPIDVLVNNAGY   88 (277)
T ss_pred             HHHHhCCCCEEEECCCc
Confidence               12468998887653

>PRK07775 short chain dehydrogenase; Provisional

Probab=83.42  E-value=15  Score=28.22  Aligned_cols=82  Identities=13%  Similarity=0.123  Sum_probs=49.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +.+++|=.|++ |.+|..+++    .|.+|++++.+....+....++...+        .++.....|..+.+.+..+..
T Consensus         9 ~~~~vlVtGa~-g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~   79 (274)
T PRK07775          9 DRRPALVAGAS-SGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG--------GEAVAFPLDVTDPDSVKSFVA   79 (274)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence            44678888864 555665554    57899999887665544444443322        235555667776665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+|+.+--.
T Consensus        80 ~~~~~~~~id~vi~~Ag~   97 (274)
T PRK07775         80 QAEEALGEIEVLVSGAGD   97 (274)
T ss_pred             HHHHhcCCCCEEEECCCc
Confidence            1   12468988877643

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=83.39  E-value=5.6  Score=31.06  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=50.6

Q ss_pred             CeEEEeCCcCCh--HHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH--HH
Q 030274           76 SSILELGSGVGV--TGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK--II  148 (180)
Q Consensus        76 ~~vLdlG~G~G~--~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  148 (180)
                      ...||||||.=.  ..-.+|+.   .++|+-+|.++-++..++.-+..+.       .....+...+..+.+.+..  ..
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-------~g~t~~v~aD~r~p~~iL~~p~~  142 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-------RGRTAYVQADLRDPEAILAHPEV  142 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-------TSEEEEEE--TT-HHHHHCSHHH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-------CccEEEEeCCCCCHHHHhcCHHH
Confidence            479999999632  22334442   5899999999999998888777663       1236677888877654322  00


Q ss_pred             h-h-CCCCCcEEEEcccccc-C---CchhhHHHHHHh
Q 030274          149 Q-K-YPGGFDLILGADIYIL-Y---NRSLLMTSFFQA  179 (180)
Q Consensus       149 ~-~-~~~~fD~Ii~~d~~y~-~---~~~~l~~~~~~a  179 (180)
                      . . ...+.=.++...++++ .   +...++..+.++
T Consensus       143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~  179 (267)
T PF04672_consen  143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDA  179 (267)
T ss_dssp             HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCC
T ss_pred             HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHh
Confidence            0 0 1123335777777776 2   333455555443

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=83.38  E-value=16  Score=32.51  Aligned_cols=86  Identities=16%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +.+++||=.|++.| +|..    +++.|++|+++|.+...++.+...+....      ...++.....|..+.+.+....
T Consensus       412 l~gkvvLVTGasgg-IG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~------~~~~~~~v~~Dvtd~~~v~~a~  484 (676)
T TIGR02632       412 LARRVAFVTGGAGG-IGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF------GAGRAVALKMDVTDEQAVKAAF  484 (676)
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc------CCCcEEEEECCCCCHHHHHHHH
Confidence            46788998888655 3444    34458999999998876665554443221      0113445666777665544433


Q ss_pred             h---hCCCCCcEEEEccccc
Q 030274          149 Q---KYPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~y  165 (180)
                      .   ...+++|++|.+--+.
T Consensus       485 ~~i~~~~g~iDilV~nAG~~  504 (676)
T TIGR02632       485 ADVALAYGGVDIVVNNAGIA  504 (676)
T ss_pred             HHHHHhcCCCcEEEECCCCC
Confidence            2   1235789988877543

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.37  E-value=9.4  Score=29.19  Aligned_cols=82  Identities=13%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             CCCeEEEeCC-cCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGS-GVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~-G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++|=.|+ |++-+|..+    ++.|++|+.++......+.+++-.+..+         .......|..+.+....+.
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Dv~d~~~v~~~~   75 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---------SDLVFPCDVASDEQIDALF   75 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC---------CcceeeccCCCHHHHHHHH
Confidence            5678999997 344445544    4568999988653222222222111111         1124566777766655543


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+++.|--+
T Consensus        76 ~~~~~~~g~iD~lvnnAG~   94 (260)
T PRK06997         76 ASLGQHWDGLDGLVHSIGF   94 (260)
T ss_pred             HHHHHHhCCCcEEEEcccc
Confidence            32   23689999988744

>PRK06101 short chain dehydrogenase; Provisional

Probab=83.36  E-value=8.4  Score=28.90  Aligned_cols=74  Identities=15%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             CeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           76 SSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +++|=.|+. |.+|..    +++.|.+|++++.+++.++.+...    .        .++.....|..+.+.+..+....
T Consensus         2 ~~vlItGas-~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~--------~~~~~~~~D~~~~~~~~~~~~~~   68 (240)
T PRK06101          2 TAVLITGAT-SGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S--------ANIFTLAFDVTDHPGTKAALSQL   68 (240)
T ss_pred             cEEEEEcCC-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c--------CCCeEEEeeCCCHHHHHHHHHhc
Confidence            356666664 444544    444589999999987655433221    1        13556778888777666665443


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      ....|.++.+-
T Consensus        69 ~~~~d~~i~~a   79 (240)
T PRK06101         69 PFIPELWIFNA   79 (240)
T ss_pred             ccCCCEEEEcC
Confidence            33457666544

>PRK06482 short chain dehydrogenase; Provisional

Probab=83.19  E-value=9.8  Score=29.12  Aligned_cols=76  Identities=17%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             CeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           76 SSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      +++|=.|+ +|.+|..++    +.|.+|++++.+++.++.++....           .++.+...|..+.+.+...... 
T Consensus         3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~   70 (276)
T PRK06482          3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------DRLWVLQLDVTDSAAVRAVVDRA   70 (276)
T ss_pred             CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------CceEEEEccCCCHHHHHHHHHHH
Confidence            46777776 455555544    457899999988766554443211           1355677888877655443321 


Q ss_pred             --CCCCCcEEEEccc
Q 030274          151 --YPGGFDLILGADI  163 (180)
Q Consensus       151 --~~~~fD~Ii~~d~  163 (180)
                        ..++.|+|+.+.-
T Consensus        71 ~~~~~~id~vi~~ag   85 (276)
T PRK06482         71 FAALGRIDVVVSNAG   85 (276)
T ss_pred             HHHcCCCCEEEECCC
Confidence              2356899888764

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.18  E-value=12  Score=28.37  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             CCCeEEEeCCcC-ChHHHHH----hhcCCeEEEecCC------------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           74 QASSILELGSGV-GVTGILC----SRFCREVLLTDHN------------EEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~l----a~~~~~V~~~D~~------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      .+++||=.|++. |.+|..+    ++.|++|++++.+            +.... +...+...+        .++.....
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~   74 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG--------VRCEHMEI   74 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC--------CeEEEEEC
Confidence            567899999863 3445444    4458899999865            22222 222222221        24666777


Q ss_pred             ecCCCchhhHHHhh---CCCCCcEEEEcccc
Q 030274          137 EWGNSDQINKIIQK---YPGGFDLILGADIY  164 (180)
Q Consensus       137 ~~~~~~~~~~~~~~---~~~~fD~Ii~~d~~  164 (180)
                      |..+.+.+......   ..+++|+|+.+--+
T Consensus        75 D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~  105 (256)
T PRK12748         75 DLSQPYAPNRVFYAVSERLGDPSILINNAAY  105 (256)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence            77776654443322   23578998887644

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=82.90  E-value=4  Score=32.91  Aligned_cols=43  Identities=21%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILK  113 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~  113 (180)
                      ...++.+||=.|+|. |..++.+|+. |. +|++++.+++-++.++
T Consensus       184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~  229 (369)
T cd08301         184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK  229 (369)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            345778999998764 6666666654 66 7999998887666654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=82.79  E-value=8.7  Score=30.79  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=45.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++||=.|+ +|.+|..+++    .|.+|++++.++.........+..         ..++.+...+..+.+.+.... 
T Consensus         9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~-   77 (353)
T PLN02896          9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---------GDRLRLFRADLQEEGSFDEAV-   77 (353)
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---------CCeEEEEECCCCCHHHHHHHH-
Confidence            5678998885 6777776665    478999988765432222211111         123556666666655444332 


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                         ..+|+|+-+-..
T Consensus        78 ---~~~d~Vih~A~~   89 (353)
T PLN02896         78 ---KGCDGVFHVAAS   89 (353)
T ss_pred             ---cCCCEEEECCcc
Confidence               357887766543

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.75  E-value=13  Score=29.27  Aligned_cols=85  Identities=14%  Similarity=0.254  Sum_probs=61.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH-
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII-  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (180)
                      ..++.|+==||-+|+   ++..+++.|++++.+-....-++...+-++..+..     . ++.+.++|..+.+...... 
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~-----~-~v~~~~~Dvs~~~~~~~~~~   83 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSL-----E-KVLVLQLDVSDEESVKKFVE   83 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCc-----C-ccEEEeCccCCHHHHHHHHH
Confidence            367899999998874   45556777998888888787788776666665421     1 5778899999887655443 


Q ss_pred             --hhCCCCCcEEEEccc
Q 030274          149 --QKYPGGFDLILGADI  163 (180)
Q Consensus       149 --~~~~~~fD~Ii~~d~  163 (180)
                        ....++.|+.|.|--
T Consensus        84 ~~~~~fg~vDvLVNNAG  100 (282)
T KOG1205|consen   84 WAIRHFGRVDVLVNNAG  100 (282)
T ss_pred             HHHHhcCCCCEEEecCc
Confidence              234578999998864

>PLN02827 Alcohol dehydrogenase-like

Probab=82.73  E-value=4.5  Score=32.94  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILK  113 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~  113 (180)
                      ...++.+||=.|+|. |..++.+|+. |. .|+++|.+++-.+.++
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~  235 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK  235 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence            345688999998875 6666666664 65 6899998887666654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=82.59  E-value=18  Score=27.03  Aligned_cols=83  Identities=10%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++|=.|+ +|.+|..+++    .|.+|+++.. ++...+.....+...+        .++.+...|..+.+.+....
T Consensus         5 ~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~   75 (247)
T PRK12935          5 NGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG--------HDVYAVQADVSKVEDANRLV   75 (247)
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHH
Confidence            5678999995 5556665554    5788887653 3333333322232221        24666778888766554443


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|+|+.+-...
T Consensus        76 ~~~~~~~~~id~vi~~ag~~   95 (247)
T PRK12935         76 EEAVNHFGKVDILVNNAGIT   95 (247)
T ss_pred             HHHHHHcCCCCEEEECCCCC
Confidence            22   124689998876553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
3bzb_A	281	Crystal Structure Of Uncharacterized Protein Cmq451		1e-05

>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From The Primitive Red Alga Cyanidioschyzon Merolae Length = 281

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 55  VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDH-NEEVLK 110
           VW GA  + D L   P+++   ++ ELG+G G+  I+   F     +V+ TD+ + E+L 
Sbjct: 60  VWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVA--FLAGADQVVATDYPDPEILN 117
Query: 111 ILKKNIEHHTS---SENPNSDAGLAVAKLEWGNS-DQINKI--IQKYPGGFDLILGADI 163
            L+ NI  HT+   S      A   V    WG+S D + +   +Q+    F ++L AD+
Sbjct: 118 SLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQR----FQVVLLADL 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	7e-22
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	8e-05
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	1e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-04
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	6e-04
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	7e-04
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	9e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 88.7 bits (219), Expect = 7e-22
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 49  DLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDH-NE 106
            L    VW GA  + D L   P+++   ++ ELG+G G+  I+       +V+ TD+ + 
Sbjct: 54  PLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDP 113

Query: 107 EVLKILKKNIEHHTSSENPNSDAG---LAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163
           E+L  L+ NI  HT++   +         V    WG+S    +        F ++L AD 
Sbjct: 114 EILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQ-RFQVVLLAD- 171

Query: 164 YILYNRSLL 172
            +L      
Sbjct: 172 -LLSFHQAH 179

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 57  PGAMLMNDYLSKN--PDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK 114
           P ++L+ + L +   P+ ++   +L+LG+G G   +  +R   EV+  + +   +  L+K
Sbjct: 214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK 273

Query: 115 NIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLIL 159
            +E             L    L     + + +        FD+I+
Sbjct: 274 GLEA----------NALKAQALHSDVDEALTE-----EARFDIIV 303

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 76  SSILELGSGVGVTGILC-SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA 134
              L+L SG G   I   SR   + +  + N   LK++K+NI      E           
Sbjct: 46  GMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEK---------F 96

Query: 135 KLEWGNSDQINKIIQKYPGGFDLI 158
           ++   ++++  +   +    FDL+
Sbjct: 97  EVRKMDANRALEQFYEEKLQFDLV 120

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 74  QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA 132
           +   I++L SG G+  +L S   + +++  +  E +  + K+++ +     N   D    
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY-----NQLED---- 99

Query: 133 VAKLEWGNSDQINKIIQKYPGGFDLILG 160
             ++E    D             D++  
Sbjct: 100 --QIEIIEYDLKKITDLIPKERADIVTC 125

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 73  LQASSILELGSGVGVTGILC-SRFCREVLLTDHNEEVLKILKKNIEH 118
           +  S  L+  +G G  G    SR  ++V   + ++ V   LKKN++ 
Sbjct: 52  IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQT 98

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 16/84 (19%)

Query: 77  SILELGSGVGVTGILCSRFCR--EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA 134
             LE+G+G      L +      +V  T+ +EE  +  ++NIE +             V 
Sbjct: 58  VALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN----------NSNV- 106

Query: 135 KLEWGNSDQINKIIQKYPGGFDLI 158
           +L   N   I  ++    G FD+I
Sbjct: 107 RLVKSNGGIIKGVV---EGTFDVI 127

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 66  LSKNPDVLQASSILELGSGVGVTGI-LCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSE 123
           L+      +A  I +LG+G G  G+ + +R  + EV L + ++E+ +  ++++E     +
Sbjct: 28  LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELP---D 84

Query: 124 NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILG 160
           N    A + V + +     +           F  ++ 
Sbjct: 85  NAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIM 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.78
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.56
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.55
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.5
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.5
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.49
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.48
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.48
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.48
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.47
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.47
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.47
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.47
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.46
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.46
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.46
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.46
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.45
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.45
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.45
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.45
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.44
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.44
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.44
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.44
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.43
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.43
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.43
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.43
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.43
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.43
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.42
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.42
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.42
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.41
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.41
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.41
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.4
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.4
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.4
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.4
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.4
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.4
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.4
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.4
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.39
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.39
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.39
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.39
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.39
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.39
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.38
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.38
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.38
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.38
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.38
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.38
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.38
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.38
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.37
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.37
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.37
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.37
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.37
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.37
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.36
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.36
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.35
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.35
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.35
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.34
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.33
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.33
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.33
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.33
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.33
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.33
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.32
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.32
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.32
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.32
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.31
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.31
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.31
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.31
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.31
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.31
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.3
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.3
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.3
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.29
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.29
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.29
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.29
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.29
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.28
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.28
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.28
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.28
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.27
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.27
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.27
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.26
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.26
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.26
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.26
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.26
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.26
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.25
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.25
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.25
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.25
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.25
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.25
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.24
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.24
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.24
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.24
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.24
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.24
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.24
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.24
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.24
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.23
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.23
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.23
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.23
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.22
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.22
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.22
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.22
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.22
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.21
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.21
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.21
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.21
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.21
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.21
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.2
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.2
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.2
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.2
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.2
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.2
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.2
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.2
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.19
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.19
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.19
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.18
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.18
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.17
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.17
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.17
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.17
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.17
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.17
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.17
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.17
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.16
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.16
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.15
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.15
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.15
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.14
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.14
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.14
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.13
3ocj_A	305	Putative exported protein; structural genomics, PS	99.13
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.13
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.12
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.12
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.11
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.11
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.1
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.1
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.1
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.09
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.09
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.09
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.09
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.08
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.08
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.08
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.06
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.06
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.05
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.05
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.05
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.04
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.03
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.03
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.02
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.02
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.02
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.02
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.0
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.0
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.0
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.99
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.99
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.99
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.98
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.98
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.98
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.98
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.97
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.97
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.97
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.97
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.96
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.96
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.95
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.95
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.95
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.95
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.94
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.94
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.94
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.94
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.93
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.91
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.91
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.9
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.88
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.88
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.87
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.86
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.85
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.85
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.83
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.83
2o07_A	304	Spermidine synthase; structural genomics, structur	98.82
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.82
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.8
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.8
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.79
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.78
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.78
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.77
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.73
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.71
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.71
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.7
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.69
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.68
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.64
3lkd_A	542	Type I restriction-modification system methyltrans	98.64
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.61
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.61
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.59
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.59
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.55
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.52
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.51
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.5
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.49
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.48
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.47
3khk_A	544	Type I restriction-modification system methylation	98.47
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.46
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.46
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.43
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.4
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.36
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.35
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.31
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.27
3ufb_A	530	Type I restriction-modification system methyltran	98.27
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.22
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.08
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.06
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.02
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.92
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.76
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.71
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.69
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.67
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.6
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.59
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.42
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.26
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.2
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.2
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.16
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.11
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.1
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.07
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.05
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.01
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.98
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.9
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.89
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.81
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.67
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.63
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.6
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.52
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.29
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.21
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.1
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.09
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.01
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.87
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.6
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.51
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.41
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.08
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.04
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.0
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.97
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	94.97
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	94.86
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.79
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.77
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.76
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.76
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.68
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.67
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.67
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	94.64
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.62
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.61
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.6
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.56
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.54
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	94.5
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.49
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.48
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.48
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.47
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.46
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.42
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.3
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.26
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	94.25
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.23
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.21
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.2
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.2
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.18
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.17
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.13
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.1
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.1
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.08
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.05
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	94.05
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.05
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.05
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.01
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.0
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.99
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.98
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.96
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.92
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.92
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.91
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.91
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.88
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.82
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	93.81
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.81
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.79
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	93.79
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.79
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.78
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.77
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.76
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.72
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.7
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.68
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.67
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.63
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.61
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.61
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.59
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.56
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.55
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.55
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.54
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.43
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.39
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.38
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	93.34
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	93.34
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.32
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.31
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	93.3
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.3
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.28
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.27
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.26
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	93.26
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	93.22
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.2
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.18
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.17
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	93.15
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.14
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.09
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.07
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.05
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	93.05
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	93.02
1xq1_A	266	Putative tropinone reducatse; structural genomics,	93.01
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.97
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	92.97
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	92.94
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.92
1xkq_A	280	Short-chain reductase family member (5D234); parra	92.85
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	92.82
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.81
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.8
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.8
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.76
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	92.71
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	92.68
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	92.6
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.6
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	92.59
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.59
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.58
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	92.55
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.55
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.52
3rih_A	293	Short chain dehydrogenase or reductase; structural	92.51
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.51
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.5
1xhl_A	297	Short-chain dehydrogenase/reductase family member	92.46
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	92.42
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	92.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	92.36
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	92.33
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.33
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.29
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	92.27
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	92.17
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.15
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	92.12
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	92.11
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	92.1
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	92.06
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	92.02
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	91.99
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	91.95
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.93
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	91.86
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	91.84
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	91.82
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.73
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.71
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.71
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.56
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	91.55
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	91.55
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	91.51
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.49
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	91.46
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	91.4
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	91.3
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	91.29
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	91.29
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	91.29
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	91.27
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.22
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.19
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	91.18
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	91.16
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	91.13
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	91.12
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.06
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	91.0
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	91.0
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	90.94
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	90.93
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	90.87
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	90.82
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.81
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	90.75
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	90.74
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	90.65
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	90.65
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	90.58
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	90.44
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	90.43
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	90.42
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	90.35
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.34

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.78  E-value=1.7e-18  Score=134.05  Aligned_cols=130  Identities=27%  Similarity=0.420  Sum_probs=90.4

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecC-CHHHHHHHHHHHHHhcCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDH-NEEVLKILKKNIEHHTSSENP  125 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~-~~~~l~~~~~n~~~n~~~~~~  125 (180)
                      ...+|..+||++..|++++.+.....++++|||||||+|.+++.+++.+. +|+++|+ ++.+++.+++|+..|......
T Consensus        53 ~~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~  132 (281)
T 3bzb_A           53 HPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCS  132 (281)
T ss_dssp             ---------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----
T ss_pred             CCCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc
Confidence            45578899999999999999887656788999999999999999999876 9999999 899999999999655211000


Q ss_pred             C---CCCcEEEEEeecCCCchhhHHHhh-CCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          126 N---SDAGLAVAKLEWGNSDQINKIIQK-YPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       126 ~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .   ...++.+..++|++...  .+... ..++||+|++++++|+ .....+++.+.+.
T Consensus       133 ~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~  189 (281)
T 3bzb_A          133 SETVKRASPKVVPYRWGDSPD--SLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKML  189 (281)
T ss_dssp             ------CCCEEEECCTTSCTH--HHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHH
T ss_pred             cccCCCCCeEEEEecCCCccH--HHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHH
Confidence            0   01357788889997521  11111 3568999999999987 4556666666543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.56  E-value=1.2e-13  Score=111.08  Aligned_cols=125  Identities=15%  Similarity=0.198  Sum_probs=92.1

Q ss_pred             CCCceEEEEEECCeEEEEEeeeccCCCcCCcC-ceecchHHHHHHHHhhCC--CCCCCCeEEEeCCcCChHHHHHhhcCC
Q 030274           21 NDDYQLTTFTFGSQVLHLFCLQSASTDFDLTG-QLVWPGAMLMNDYLSKNP--DVLQASSILELGSGVGVTGILCSRFCR   97 (180)
Q Consensus        21 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g-~~~w~~~~~l~~~l~~~~--~~~~~~~vLdlG~G~G~~~l~la~~~~   97 (180)
                      ...+....+.+.+..+.+...      ++.+. ..+.+.+..+.+.+.+..  ...++.+|||+|||+|.+++.+++.+.
T Consensus       183 ~~~w~~~~~~~~g~~~~~~~~------pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~  256 (381)
T 3dmg_A          183 PSLWRAFSARILGAEYTFHHL------PGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA  256 (381)
T ss_dssp             CCCCEEEEEEETTEEEEEEEC------TTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC
T ss_pred             ccccceeeEEecCceEEEEeC------CCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC
Confidence            344555677778887777742      33333 336778888888886532  223677999999999999999999999


Q ss_pred             eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274           98 EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus        98 ~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +|+++|+++.+++.+++|+..|+.        ++.+...++....       ...++||+|++++++++
T Consensus       257 ~V~gvDis~~al~~A~~n~~~~~~--------~v~~~~~D~~~~~-------~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          257 EVVGVEDDLASVLSLQKGLEANAL--------KAQALHSDVDEAL-------TEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTC--------CCEEEECSTTTTS-------CTTCCEEEEEECCCCCT
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC--------CeEEEEcchhhcc-------ccCCCeEEEEECCchhh
Confidence            999999999999999999999862        2444444444321       12368999999999876

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.55  E-value=8.1e-15  Score=106.67  Aligned_cols=100  Identities=18%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             ecchHHHHHHHHhhCCC---CCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           55 VWPGAMLMNDYLSKNPD---VLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~---~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      .+|....+.+.+.+...   ..++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|++.++.       .+
T Consensus        22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~   94 (189)
T 3p9n_A           22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-------SG   94 (189)
T ss_dssp             C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-------SC
T ss_pred             CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-------Cc
Confidence            45555555444432211   1367899999999999999777765 5899999999999999999999862       23


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +.+...++.+.     .......+||+|++++++++
T Consensus        95 v~~~~~d~~~~-----~~~~~~~~fD~i~~~~p~~~  125 (189)
T 3p9n_A           95 ATLRRGAVAAV-----VAAGTTSPVDLVLADPPYNV  125 (189)
T ss_dssp             EEEEESCHHHH-----HHHCCSSCCSEEEECCCTTS
T ss_pred             eEEEEccHHHH-----HhhccCCCccEEEECCCCCc
Confidence            44544433221     11112578999999998654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.50  E-value=1.7e-13  Score=104.51  Aligned_cols=101  Identities=13%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             CceecchHHHHHHHHhhCCCCC-CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVL-QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~-~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      +.+....+.+|+.++.    .. ++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|+..++.      ..
T Consensus        30 ~~~~~~d~~ll~~~~~----~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~------~~   99 (259)
T 3lpm_A           30 VFSFSIDAVLLAKFSY----LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL------ED   99 (259)
T ss_dssp             TBCCCHHHHHHHHHCC----CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC------TT
T ss_pred             CccCcHHHHHHHHHhc----CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC------cc
Confidence            3334445677777762    22 567999999999999999998764 999999999999999999999873      23


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ++.+...++.+...     ....++||+|++++|++..
T Consensus       100 ~v~~~~~D~~~~~~-----~~~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          100 QIEIIEYDLKKITD-----LIPKERADIVTCNPPYFAT  132 (259)
T ss_dssp             TEEEECSCGGGGGG-----TSCTTCEEEEEECCCC---
T ss_pred             cEEEEECcHHHhhh-----hhccCCccEEEECCCCCCC
Confidence            46666555443211     0125789999999998764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.50  E-value=8.5e-14  Score=111.55  Aligned_cols=101  Identities=14%  Similarity=0.236  Sum_probs=75.0

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      .+.+.++...+++++|||||||+|++++.+|+.|+ +|+++|.++ +++.|+++++.|+.      ..++.+..-+..+.
T Consensus        72 ~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~------~~~i~~i~~~~~~~  144 (376)
T 4hc4_A           72 RLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGL------EDRVHVLPGPVETV  144 (376)
T ss_dssp             HHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTC------TTTEEEEESCTTTC
T ss_pred             HHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC------CceEEEEeeeeeee
Confidence            34455565667899999999999999999999985 899999985 88999999999984      34577776655543


Q ss_pred             chhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          142 DQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      +        .+.+||+||+..+-|....+.++..+..
T Consensus       145 ~--------lpe~~DvivsE~~~~~l~~e~~l~~~l~  173 (376)
T 4hc4_A          145 E--------LPEQVDAIVSEWMGYGLLHESMLSSVLH  173 (376)
T ss_dssp             C--------CSSCEEEEECCCCBTTBTTTCSHHHHHH
T ss_pred             c--------CCccccEEEeecccccccccchhhhHHH
Confidence            2        3578999999766555333334444443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.49  E-value=7.9e-13  Score=95.56  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=82.2

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCce-ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEe
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLT  102 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~-~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~  102 (180)
                      .......+.+..+.+.....      .+... ..+.+..+.+.+    ...++.+|||+|||+|..++.+++.+.+|+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~   80 (194)
T 1dus_A           11 VKIVEDILRGKKLKFKTDSG------VFSYGKVDKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADEVKSTTMA   80 (194)
T ss_dssp             EEEEEEEETTEEEEEEEETT------STTTTSCCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEE
T ss_pred             ccEEeeecCCCceEEEeCCC------cCCccccchHHHHHHHHc----ccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEE
Confidence            44556677787777753221      11111 113334444444    22367799999999999999999888899999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          103 DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       103 D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      |+++.+++.+++|+..++..     ..++.+...++....        ..++||+|++++++++
T Consensus        81 D~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~d~~~~~--------~~~~~D~v~~~~~~~~  131 (194)
T 1dus_A           81 DINRRAIKLAKENIKLNNLD-----NYDIRVVHSDLYENV--------KDRKYNKIITNPPIRA  131 (194)
T ss_dssp             ESCHHHHHHHHHHHHHTTCT-----TSCEEEEECSTTTTC--------TTSCEEEEEECCCSTT
T ss_pred             ECCHHHHHHHHHHHHHcCCC-----ccceEEEECchhccc--------ccCCceEEEECCCccc
Confidence            99999999999999887621     002666666655431        2468999999988764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.48  E-value=3.8e-13  Score=101.85  Aligned_cols=105  Identities=13%  Similarity=-0.050  Sum_probs=78.0

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ......+.+.....++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++++.++.      ..++.+...++
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~v~~~~~d~   95 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV------SERVHFIHNDA   95 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEESCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC------CcceEEEECCh
Confidence            334444444444457789999999999999988875 77999999999999999999988762      23567777666


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ....        ..++||+|++..++++ .+....++.+.+
T Consensus        96 ~~~~--------~~~~fD~V~~~~~~~~~~~~~~~l~~~~r  128 (256)
T 1nkv_A           96 AGYV--------ANEKCDVAACVGATWIAGGFAGAEELLAQ  128 (256)
T ss_dssp             TTCC--------CSSCEEEEEEESCGGGTSSSHHHHHHHTT
T ss_pred             HhCC--------cCCCCCEEEECCChHhcCCHHHHHHHHHH
Confidence            5431        1468999999999877 455555555443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.48  E-value=2.2e-13  Score=98.51  Aligned_cols=79  Identities=10%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|++.++.       .++.+..   .....+.   ....+
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------~~v~~~~---~~~~~l~---~~~~~   88 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-------ENTELIL---DGHENLD---HYVRE   88 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEEE---SCGGGGG---GTCCS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-------CcEEEEe---CcHHHHH---hhccC
Confidence            678999999999999999999899999999999999999999998862       2344443   2222211   12356


Q ss_pred             CCcEEEEccccc
Q 030274          154 GFDLILGADIYI  165 (180)
Q Consensus       154 ~fD~Ii~~d~~y  165 (180)
                      +||+|+++..+.
T Consensus        89 ~fD~v~~~~~~~  100 (185)
T 3mti_A           89 PIRAAIFNLGYL  100 (185)
T ss_dssp             CEEEEEEEEC--
T ss_pred             CcCEEEEeCCCC
Confidence            899999885443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.48  E-value=1.8e-13  Score=104.74  Aligned_cols=91  Identities=11%  Similarity=0.157  Sum_probs=66.5

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.+.......++.+|||||||+|..++.+++.+.+|+++|.|+.|++.+++|+..+             ....+|.+.+.
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~-------------~v~~~~~~~~~  101 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR-------------CVTIDLLDITA  101 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS-------------CCEEEECCTTS
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-------------cceeeeeeccc
Confidence            34444444557889999999999999999999999999999999999999987654             23344444321


Q ss_pred             -hhHHHhhCCCCCcEEEEccccccCCch
Q 030274          144 -INKIIQKYPGGFDLILGADIYILYNRS  170 (180)
Q Consensus       144 -~~~~~~~~~~~fD~Ii~~d~~y~~~~~  170 (180)
                       ..   ....++||+|+++.++.+....
T Consensus       102 ~~~---~~~~~~fD~Vv~~~~l~~~~~~  126 (261)
T 3iv6_A          102 EIP---KELAGHFDFVLNDRLINRFTTE  126 (261)
T ss_dssp             CCC---GGGTTCCSEEEEESCGGGSCHH
T ss_pred             ccc---cccCCCccEEEEhhhhHhCCHH
Confidence             00   0124689999999988764333

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.47  E-value=8.5e-14  Score=102.54  Aligned_cols=91  Identities=11%  Similarity=0.044  Sum_probs=64.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|++.++.       .++.+...++.      ...+...
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-------~~v~~~~~D~~------~~~~~~~  120 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-------GNARVVNSNAM------SFLAQKG  120 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-------CSEEEECSCHH------HHHSSCC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-------CcEEEEECCHH------HHHhhcC
Confidence            56799999999999999877666 5999999999999999999999862       13333332211      1122235


Q ss_pred             CCCcEEEEccccccCCchhhHHHHH
Q 030274          153 GGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      .+||+|++++++........++.+.
T Consensus       121 ~~fD~V~~~~p~~~~~~~~~l~~l~  145 (202)
T 2fpo_A          121 TPHNIVFVDPPFRRGLLEETINLLE  145 (202)
T ss_dssp             CCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCcHHHHHHHHH
Confidence            6899999999843344444555443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.47  E-value=4.7e-13  Score=105.82  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             eEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHH----HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEE
Q 030274           25 QLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAML----MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVL  100 (180)
Q Consensus        25 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~----l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~  100 (180)
                      ....+..++..+.+..     .....+|.  .+....    +.+++..   ..++.+|||+|||+|.+++.+++.+++|+
T Consensus       110 ~~~~i~e~g~~f~v~~-----~~~~~tg~--f~dq~~~~~~l~~~~~~---~~~~~~VLDlgcGtG~~sl~la~~ga~V~  179 (332)
T 2igt_A          110 ETWPLSLLGVEFLGRF-----TAFRHVGV--FPEQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGAEVT  179 (332)
T ss_dssp             SEEEEEETTEEEEEEC-----CSSSCCSC--CGGGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTCEEE
T ss_pred             CceEEEECCEEEEEec-----Ccccccee--chHHHHHHHHHHHHHHh---cCCCCcEEEcccccCHHHHHHHHcCCEEE
Confidence            3445666776666653     11222332  333333    3444432   12567999999999999999999888999


Q ss_pred             EecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH--hhCCCCCcEEEEcccccc
Q 030274          101 LTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII--QKYPGGFDLILGADIYIL  166 (180)
Q Consensus       101 ~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~Ii~~d~~y~  166 (180)
                      ++|+|+.+++.+++|++.|+...     .++.+.     ..+......  .....+||+|++++|.|.
T Consensus       180 ~VD~s~~al~~a~~n~~~~gl~~-----~~v~~i-----~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~  237 (332)
T 2igt_A          180 HVDASKKAIGWAKENQVLAGLEQ-----APIRWI-----CEDAMKFIQREERRGSTYDIILTDPPKFG  237 (332)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCTT-----SCEEEE-----CSCHHHHHHHHHHHTCCBSEEEECCCSEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCc-----cceEEE-----ECcHHHHHHHHHhcCCCceEEEECCcccc
Confidence            99999999999999999997320     023333     222222111  111468999999999765

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.47  E-value=8.9e-13  Score=100.70  Aligned_cols=109  Identities=12%  Similarity=0.057  Sum_probs=80.2

Q ss_pred             hHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           58 GAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        58 ~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      ........+.... ...++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.++++++.++.      ..++.+..
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~  102 (267)
T 3kkz_A           29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL------QNRVTGIV  102 (267)
T ss_dssp             CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEE
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC------CcCcEEEE
Confidence            3333444333333 34577899999999999999999875 5999999999999999999988762      23577777


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHHh
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQA  179 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~a  179 (180)
                      .++.+..       ...++||+|+++.++++.+....++.+.+.
T Consensus       103 ~d~~~~~-------~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~  139 (267)
T 3kkz_A          103 GSMDDLP-------FRNEELDLIWSEGAIYNIGFERGLNEWRKY  139 (267)
T ss_dssp             CCTTSCC-------CCTTCEEEEEESSCGGGTCHHHHHHHHGGG
T ss_pred             cChhhCC-------CCCCCEEEEEEcCCceecCHHHHHHHHHHH
Confidence            7775432       135689999999999887655556555443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.47  E-value=5.1e-13  Score=109.15  Aligned_cols=109  Identities=14%  Similarity=-0.024  Sum_probs=80.9

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      ++.|.+..-+.+..+.+++.+.....++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.|++|++.|+.      
T Consensus       260 ~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~------  333 (433)
T 1uwv_A          260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL------  333 (433)
T ss_dssp             SSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC------
T ss_pred             cccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            44455555566777777776554444677999999999999999999888999999999999999999999862      


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                       .++.+...++.....  . .+....+||+|+++||.-.
T Consensus       334 -~~v~f~~~d~~~~l~--~-~~~~~~~fD~Vv~dPPr~g  368 (433)
T 1uwv_A          334 -QNVTFYHENLEEDVT--K-QPWAKNGFDKVLLDPARAG  368 (433)
T ss_dssp             -CSEEEEECCTTSCCS--S-SGGGTTCCSEEEECCCTTC
T ss_pred             -CceEEEECCHHHHhh--h-hhhhcCCCCEEEECCCCcc
Confidence             256677666654211  0 0012357999999888643

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.46  E-value=4.7e-13  Score=99.93  Aligned_cols=80  Identities=26%  Similarity=0.416  Sum_probs=64.1

Q ss_pred             CCCeEEEeCCc-CChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSG-VGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G-~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+||| +|.+++.+++. +.+|+++|+++.+++.+++|+..++.        ++.+...++.....      ..
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------~v~~~~~d~~~~~~------~~  120 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--------NVRLVKSNGGIIKG------VV  120 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--------CCEEEECSSCSSTT------TC
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--------CcEEEeCCchhhhh------cc
Confidence            67899999999 99999999988 89999999999999999999999862        45566666532221      12


Q ss_pred             CCCCcEEEEccccccC
Q 030274          152 PGGFDLILGADIYILY  167 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~  167 (180)
                      .++||+|++++|++..
T Consensus       121 ~~~fD~I~~npp~~~~  136 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDK  136 (230)
T ss_dssp             CSCEEEEEECCCCC--
T ss_pred             cCceeEEEECCCCcCC
Confidence            4789999999998763

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.46  E-value=7.1e-13  Score=106.44  Aligned_cols=118  Identities=14%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             EEEEECCeEEEEEeeeccCCCcCCcCc-eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEec
Q 030274           27 TTFTFGSQVLHLFCLQSASTDFDLTGQ-LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTD  103 (180)
Q Consensus        27 ~~~~~~~~~~~i~~~~~~~~~~~~~g~-~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D  103 (180)
                      ..+.+.+..+.+..      .++.|.. .+...+..+.+++.    ...+.+|||+|||+|.+++.+++.  +.+|+++|
T Consensus       184 ~~~~~~~~~~~~~~------~pg~Fs~~~~d~~~~~ll~~l~----~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD  253 (375)
T 4dcm_A          184 VSWKLEGTDWTIHN------HANVFSRTGLDIGARFFMQHLP----ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVD  253 (375)
T ss_dssp             EEEEETTTTEEEEE------CTTCTTCSSCCHHHHHHHHTCC----CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEE
T ss_pred             eEEEecCCceEEEe------CCCcccCCcccHHHHHHHHhCc----ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEE
Confidence            36677777777763      2444443 35555556555543    234579999999999999999987  58999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          104 HNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       104 ~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +++.+++.+++|+..|+...    ..++.+...+....        ...++||+|++++|++.
T Consensus       254 ~s~~al~~Ar~n~~~ngl~~----~~~v~~~~~D~~~~--------~~~~~fD~Ii~nppfh~  304 (375)
T 4dcm_A          254 ESPMAVASSRLNVETNMPEA----LDRCEFMINNALSG--------VEPFRFNAVLCNPPFHQ  304 (375)
T ss_dssp             SCHHHHHHHHHHHHHHCGGG----GGGEEEEECSTTTT--------CCTTCEEEEEECCCC--
T ss_pred             CcHHHHHHHHHHHHHcCCCc----CceEEEEechhhcc--------CCCCCeeEEEECCCccc
Confidence            99999999999999986210    11243444333321        13468999999999875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.46  E-value=4.7e-14  Score=101.35  Aligned_cols=110  Identities=17%  Similarity=0.215  Sum_probs=69.0

Q ss_pred             ecchHHHHHHHHhhCCC-CCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           55 VWPGAMLMNDYLSKNPD-VLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~-~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      ..|....+.+.+.+... ..++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|++.++..      .++.
T Consensus        11 ~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------~~~~   84 (177)
T 2esr_A           11 TRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE------NRFT   84 (177)
T ss_dssp             -------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG------GGEE
T ss_pred             CCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC------CceE
Confidence            34444444444433222 3467899999999999999988875 69999999999999999999887521      1344


Q ss_pred             EEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      +...++.      ...+....+||+|++++++........+..+
T Consensus        85 ~~~~d~~------~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l  122 (177)
T 2esr_A           85 LLKMEAE------RAIDCLTGRFDLVFLDPPYAKETIVATIEAL  122 (177)
T ss_dssp             EECSCHH------HHHHHBCSCEEEEEECCSSHHHHHHHHHHHH
T ss_pred             EEECcHH------HhHHhhcCCCCEEEECCCCCcchHHHHHHHH
Confidence            4332222      1122234679999999886433333444443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.46  E-value=1.1e-12  Score=98.75  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=80.6

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      -||....+.+.+.-    .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++.       .++.+.
T Consensus         6 ~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~v~~~   74 (239)
T 1xxl_A            6 HHHSLGLMIKTAEC----RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-------ENVRFQ   74 (239)
T ss_dssp             CHHHHHHHHHHHTC----CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-------CSEEEE
T ss_pred             cCCCcchHHHHhCc----CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-------CCeEEE
Confidence            57777777776643    3677999999999999999999888999999999999999999988752       246666


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ..++....       ...++||+|+++.++++ .+....+..+.+
T Consensus        75 ~~d~~~~~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~  112 (239)
T 1xxl_A           75 QGTAESLP-------FPDDSFDIITCRYAAHHFSDVRKAVREVAR  112 (239)
T ss_dssp             ECBTTBCC-------SCTTCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred             ecccccCC-------CCCCcEEEEEECCchhhccCHHHHHHHHHH
Confidence            66554321       13468999999998877 555555555544

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.45  E-value=1.2e-12  Score=99.05  Aligned_cols=109  Identities=13%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             chHHHHHHHHhhC-CCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           57 PGAMLMNDYLSKN-PDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        57 ~~~~~l~~~l~~~-~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      |........+... ....++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++++..++.      ..++.+.
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~  101 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC------ADRVKGI  101 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEE
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC------CCceEEE
Confidence            4444444444443 344567899999999999999999875 4999999999999999999998863      2346777


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      ..++....       ...++||+|+++.++++.+....++.+.+
T Consensus       102 ~~d~~~~~-------~~~~~fD~v~~~~~l~~~~~~~~l~~~~~  138 (257)
T 3f4k_A          102 TGSMDNLP-------FQNEELDLIWSEGAIYNIGFERGMNEWSK  138 (257)
T ss_dssp             ECCTTSCS-------SCTTCEEEEEEESCSCCCCHHHHHHHHHT
T ss_pred             ECChhhCC-------CCCCCEEEEEecChHhhcCHHHHHHHHHH
Confidence            77764432       13568999999999988765566655544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.45  E-value=2.5e-13  Score=100.41  Aligned_cols=97  Identities=14%  Similarity=0.083  Sum_probs=74.8

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      .|.....+..++.......++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++         ++.+.
T Consensus        32 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~  102 (216)
T 3ofk_A           32 NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS---------HISWA  102 (216)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS---------SEEEE
T ss_pred             CHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC---------CeEEE
Confidence            444445566666544444467799999999999999999988899999999999999999876542         46666


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      ..+..+..        ..++||+|+++.++++..
T Consensus       103 ~~d~~~~~--------~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A          103 ATDILQFS--------TAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             ECCTTTCC--------CSCCEEEEEEESCGGGSS
T ss_pred             EcchhhCC--------CCCCccEEEEccHHHhCC
Confidence            66665432        357899999999998844

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.45  E-value=1.2e-13  Score=98.32  Aligned_cols=92  Identities=18%  Similarity=0.256  Sum_probs=66.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..++.        ++.+...++.+   ..........
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------~~~~~~~d~~~---~~~~~~~~~~  109 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--------GARVVALPVEV---FLPEAKAQGE  109 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--------CCEEECSCHHH---HHHHHHHTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--------ceEEEeccHHH---HHHhhhccCC
Confidence            567999999999999999999888899999999999999999998861        23333322221   1111112234


Q ss_pred             CCcEEEEccccccCCchhhHHHHH
Q 030274          154 GFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      +||+|++++++. ......++.+.
T Consensus       110 ~~D~i~~~~~~~-~~~~~~~~~~~  132 (171)
T 1ws6_A          110 RFTVAFMAPPYA-MDLAALFGELL  132 (171)
T ss_dssp             CEEEEEECCCTT-SCTTHHHHHHH
T ss_pred             ceEEEEECCCCc-hhHHHHHHHHH
Confidence            899999999866 55555555554

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.45  E-value=3.7e-13  Score=97.13  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=76.0

Q ss_pred             ecchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           55 VWPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      .-|....+.+.+.+.. ...++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|+..++.      ..++.
T Consensus        24 ~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~   97 (187)
T 2fhp_A           24 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE------PEKFE   97 (187)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC------GGGEE
T ss_pred             cCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcceE
Confidence            3445555655554432 22467899999999999999888775 6999999999999999999998862      12455


Q ss_pred             EEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      +...++.+.   ....+....+||+|++++++........+..+
T Consensus        98 ~~~~d~~~~---~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l  138 (187)
T 2fhp_A           98 VRKMDANRA---LEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM  138 (187)
T ss_dssp             EEESCHHHH---HHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred             EEECcHHHH---HHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence            555444321   11111235689999999985444445545444

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.44  E-value=3.9e-12  Score=103.63  Aligned_cols=107  Identities=19%  Similarity=0.136  Sum_probs=79.7

Q ss_pred             EECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHH
Q 030274           30 TFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVL  109 (180)
Q Consensus        30 ~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l  109 (180)
                      .+++..+.+.        ++.|.+.....+..|.+++..   ..++.+|||+|||+|.+++.+|+.+.+|+++|.++.++
T Consensus       257 ~~~g~~f~~~--------~~~F~q~n~~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai  325 (425)
T 2jjq_A          257 RLDDVDYLIH--------PNSFFQTNSYQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI  325 (425)
T ss_dssp             EETTEEEEEC--------TTSCCCSBHHHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             EECCEEEEEc--------cccccccCHHHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHH
Confidence            3455555544        445566566677788887766   23677999999999999999999989999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          110 KILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       110 ~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      +.|++|++.|+.       . +.+...+..+.         ...+||+|++++|.
T Consensus       326 ~~A~~n~~~ngl-------~-v~~~~~d~~~~---------~~~~fD~Vv~dPPr  363 (425)
T 2jjq_A          326 EMARRNVEINNV-------D-AEFEVASDREV---------SVKGFDTVIVDPPR  363 (425)
T ss_dssp             HHHHHHHHHHTC-------C-EEEEECCTTTC---------CCTTCSEEEECCCT
T ss_pred             HHHHHHHHHcCC-------c-EEEEECChHHc---------CccCCCEEEEcCCc
Confidence            999999999871       1 44444444332         12279999998873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.44  E-value=1.8e-12  Score=101.35  Aligned_cols=103  Identities=9%  Similarity=0.054  Sum_probs=78.1

Q ss_pred             HHHhhCCC-CCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           64 DYLSKNPD-VLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        64 ~~l~~~~~-~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +++.+... ..++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..++.      ..++.+...+..+.
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~  179 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI------DDHVRSRVCNMLDT  179 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEECCTTSC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC------CCceEEEECChhcC
Confidence            33444443 557789999999999999999987 89999999999999999999998863      23566776666543


Q ss_pred             chhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHHh
Q 030274          142 DQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQA  179 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~a  179 (180)
                      .       ...++||+|+++.++++.+...+++.+.+.
T Consensus       180 ~-------~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~  210 (312)
T 3vc1_A          180 P-------FDKGAVTASWNNESTMYVDLHDLFSEHSRF  210 (312)
T ss_dssp             C-------CCTTCEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred             C-------CCCCCEeEEEECCchhhCCHHHHHHHHHHH
Confidence            2       134689999999998886555555555443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.44  E-value=1.4e-12  Score=99.69  Aligned_cols=109  Identities=10%  Similarity=0.063  Sum_probs=81.7

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      +....+.+.+.+.....++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++..++.      ..++.+..
T Consensus        44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~~~~~~  117 (273)
T 3bus_A           44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL------ANRVTFSY  117 (273)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC------CcceEEEE
Confidence            344566666666555557889999999999999998874 78999999999999999999988762      23466766


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      .++....       ...++||+|+++.++++ .+...++..+.+
T Consensus       118 ~d~~~~~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~  154 (273)
T 3bus_A          118 ADAMDLP-------FEDASFDAVWALESLHHMPDRGRALREMAR  154 (273)
T ss_dssp             CCTTSCC-------SCTTCEEEEEEESCTTTSSCHHHHHHHHHT
T ss_pred             CccccCC-------CCCCCccEEEEechhhhCCCHHHHHHHHHH
Confidence            6665431       13468999999999888 455555555544

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.44  E-value=7.1e-14  Score=102.90  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-C
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-Y  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  151 (180)
                      ++.+|||+|||+|.+++.++..+ .+|+++|+++.+++.+++|++.++..     ..++.+...+..      ...+. .
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~v~~~~~d~~------~~~~~~~  121 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS-----SEQAEVINQSSL------DFLKQPQ  121 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----TTTEEEECSCHH------HHTTSCC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC-----ccceEEEECCHH------HHHHhhc
Confidence            56799999999999999866665 59999999999999999999988621     023444332221      11111 2


Q ss_pred             CCC-CcEEEEccccccCCchhhHHHH
Q 030274          152 PGG-FDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       152 ~~~-fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      .++ ||+|++++++.......++..+
T Consensus       122 ~~~~fD~I~~~~~~~~~~~~~~l~~~  147 (201)
T 2ift_A          122 NQPHFDVVFLDPPFHFNLAEQAISLL  147 (201)
T ss_dssp             SSCCEEEEEECCCSSSCHHHHHHHHH
T ss_pred             cCCCCCEEEECCCCCCccHHHHHHHH
Confidence            457 9999999984323333444444

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.43  E-value=2.3e-13  Score=105.44  Aligned_cols=96  Identities=23%  Similarity=0.326  Sum_probs=73.1

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      -|.+..+.+++.+.....++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++|+..++..      .++.+.
T Consensus       105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~------~~v~~~  178 (284)
T 1nv8_A          105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS------DRFFVR  178 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT------TSEEEE
T ss_pred             ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CceEEE
Confidence            4556667776654322225579999999999999999987 789999999999999999999998632      246677


Q ss_pred             EeecCCCchhhHHHhhCCCCC---cEEEEcccccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGF---DLILGADIYIL  166 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~f---D~Ii~~d~~y~  166 (180)
                      ..+|....         .++|   |+|+++||+..
T Consensus       179 ~~D~~~~~---------~~~f~~~D~IvsnPPyi~  204 (284)
T 1nv8_A          179 KGEFLEPF---------KEKFASIEMILSNPPYVK  204 (284)
T ss_dssp             ESSTTGGG---------GGGTTTCCEEEECCCCBC
T ss_pred             ECcchhhc---------ccccCCCCEEEEcCCCCC
Confidence            76666421         1367   99999998764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.43  E-value=8.3e-13  Score=106.08  Aligned_cols=94  Identities=13%  Similarity=0.186  Sum_probs=73.7

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ....+++.+.....++++|||||||+|..++.+++.|. +|+++|.+ .+++.++++++.++.      ..++.+...+.
T Consensus        49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~------~~~v~~~~~d~  121 (376)
T 3r0q_C           49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNL------DHIVEVIEGSV  121 (376)
T ss_dssp             HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTC------TTTEEEEESCG
T ss_pred             HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCC------CCeEEEEECch
Confidence            44566676666667889999999999999999999876 99999999 999999999999873      23466666655


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      .+..        .+++||+|+++.+.|...
T Consensus       122 ~~~~--------~~~~~D~Iv~~~~~~~l~  143 (376)
T 3r0q_C          122 EDIS--------LPEKVDVIISEWMGYFLL  143 (376)
T ss_dssp             GGCC--------CSSCEEEEEECCCBTTBT
T ss_pred             hhcC--------cCCcceEEEEcChhhccc
Confidence            4332        237899999988766643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.43  E-value=1.5e-13  Score=99.86  Aligned_cols=110  Identities=17%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSD  128 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~  128 (180)
                      |-.++ |.-..+...+.....  +..+|||||||+|.+++.++..  +.+|+++|+|+.|++.+++|+..++..      
T Consensus        29 TReRL-p~ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~------   99 (200)
T 3fzg_A           29 TNERV-ATLNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT------   99 (200)
T ss_dssp             HHTTG-GGHHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS------
T ss_pred             HHHHh-HhHHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------
Confidence            33445 666666666555442  4679999999999999999765  579999999999999999999998722      


Q ss_pred             CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .++.+     .+.  ..   ...+++||+|++..+++. .+....+..+.++
T Consensus       100 ~~v~~-----~d~--~~---~~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~  141 (200)
T 3fzg_A          100 IKYRF-----LNK--ES---DVYKGTYDVVFLLKMLPVLKQQDVNILDFLQL  141 (200)
T ss_dssp             SEEEE-----ECC--HH---HHTTSEEEEEEEETCHHHHHHTTCCHHHHHHT
T ss_pred             ccEEE-----ecc--cc---cCCCCCcChhhHhhHHHhhhhhHHHHHHHHHH
Confidence            12333     222  11   125678999999998876 3333333355544

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.43  E-value=7.2e-13  Score=97.63  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=77.5

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ..+++.+.+.....++ +|||+|||+|..+..+++. +.+|+++|+++.+++.+++++..++.      ..++.+...+.
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~~~d~  102 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL------NDRIQIVQGDV  102 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEECBT
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc------cCceEEEEcCH
Confidence            3444554443332234 9999999999999999886 67999999999999999999998762      23566777666


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .+..       ...++||+|+++.++++ .+...+++.+.+.
T Consensus       103 ~~~~-------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~  137 (219)
T 3dlc_A          103 HNIP-------IEDNYADLIVSRGSVFFWEDVATAFREIYRI  137 (219)
T ss_dssp             TBCS-------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             HHCC-------CCcccccEEEECchHhhccCHHHHHHHHHHh
Confidence            5432       13568999999999877 5556666655543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.43  E-value=1.3e-12  Score=99.25  Aligned_cols=92  Identities=14%  Similarity=0.180  Sum_probs=71.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..++.       .++.+...+.....       ...+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~v~~~~~d~~~l~-------~~~~  102 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-------QQVEYVQGDAEQMP-------FTDE  102 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-------CSEEEEECCC-CCC-------SCTT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEEecHHhCC-------CCCC
Confidence            677999999999999999999888999999999999999999988752       24556555544321       1346


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +||+|+++.++++ .+...++..+.+.
T Consensus       103 ~fD~V~~~~~l~~~~d~~~~l~~~~r~  129 (260)
T 1vl5_A          103 RFHIVTCRIAAHHFPNPASFVSEAYRV  129 (260)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             CEEEEEEhhhhHhcCCHHHHHHHHHHH
Confidence            8999999999877 5666666665543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.43  E-value=1.2e-12  Score=104.80  Aligned_cols=72  Identities=18%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ++.|.+.....+..+..++.+.... .+.+|||+|||+|.+++.+|+.+.+|+++|.++.+++.|++|++.|+
T Consensus       188 ~~~F~Q~n~~~~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng  259 (369)
T 3bt7_A          188 ENSFTQPNAAMNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH  259 (369)
T ss_dssp             TTSCCCSBHHHHHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CCCeecCCHHHHHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            4567777777778888887765543 35789999999999999999988899999999999999999999997

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.42  E-value=2.3e-12  Score=98.65  Aligned_cols=91  Identities=11%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++.+|||||||+|..++.+++.    +.+|+++|+|+.|++.|+++++..+.      ..++.+...+..+.        
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~------~~~v~~~~~D~~~~--------  135 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA------PTPVDVIEGDIRDI--------  135 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC------SSCEEEEESCTTTC--------
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc------CceEEEeecccccc--------
Confidence            6789999999999999998874    56999999999999999999887652      23566666554432        


Q ss_pred             hCCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          150 KYPGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                       ..++||+|+++.++++-...   .+++.+.+.
T Consensus       136 -~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~  167 (261)
T 4gek_A          136 -AIENASMVVLNFTLQFLEPSERQALLDKIYQG  167 (261)
T ss_dssp             -CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             -cccccccceeeeeeeecCchhHhHHHHHHHHH
Confidence             23579999999988774322   345554443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.42  E-value=8.8e-13  Score=97.74  Aligned_cols=113  Identities=14%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .+-.....+++.+.....++.+|||+|||+|..+..+++.+  .+|+++|+++.+++.+++++..++....  ...++.+
T Consensus        11 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~--~~~~v~~   88 (219)
T 3jwg_A           11 LNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM--QRKRISL   88 (219)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH--HHTTEEE
T ss_pred             CcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc--cCcceEE
Confidence            33444444444433222356799999999999999999876  6999999999999999999877642100  0014666


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEccccccCCch---hhHHHHH
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRS---LLMTSFF  177 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~  177 (180)
                      ...++....       ...++||+|+++.++++-...   .+++.+.
T Consensus        89 ~~~d~~~~~-------~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~  128 (219)
T 3jwg_A           89 FQSSLVYRD-------KRFSGYDAATVIEVIEHLDENRLQAFEKVLF  128 (219)
T ss_dssp             EECCSSSCC-------GGGTTCSEEEEESCGGGCCHHHHHHHHHHHH
T ss_pred             EeCcccccc-------cccCCCCEEEEHHHHHhCCHHHHHHHHHHHH
Confidence            666653321       124689999999999885433   4444443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.42  E-value=4.1e-12  Score=93.24  Aligned_cols=92  Identities=9%  Similarity=0.089  Sum_probs=69.1

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ...++.+|||+|||+|..++.+++.+  .+|+++|.++.+++.+++|+..++.       .++.+...++....      
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~~------  103 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-------RNVTLVEAFAPEGL------  103 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-------TTEEEEECCTTTTC------
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------CcEEEEeCChhhhh------
Confidence            34467899999999999999999886  8999999999999999999998862       34666655554321      


Q ss_pred             hhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          149 QKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                       ....+||+|+++.+.+  ....+++.+.+
T Consensus       104 -~~~~~~D~i~~~~~~~--~~~~~l~~~~~  130 (204)
T 3e05_A          104 -DDLPDPDRVFIGGSGG--MLEEIIDAVDR  130 (204)
T ss_dssp             -TTSCCCSEEEESCCTT--CHHHHHHHHHH
T ss_pred             -hcCCCCCEEEECCCCc--CHHHHHHHHHH
Confidence             0125799999998765  34445555444

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.41  E-value=1.9e-12  Score=99.72  Aligned_cols=94  Identities=17%  Similarity=0.228  Sum_probs=71.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++.      ..++.+...++....      ....+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~------~~~~~  135 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGV------SDNMQFIHCAAQDVA------SHLET  135 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CC------GGGEEEEESCGGGTG------GGCSS
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------CcceEEEEcCHHHhh------hhcCC
Confidence            467999999999999999999999999999999999999999987652      134666665554432      12457


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +||+|+++.++++ .+....++.+.+.
T Consensus       136 ~fD~v~~~~~l~~~~~~~~~l~~~~~~  162 (285)
T 4htf_A          136 PVDLILFHAVLEWVADPRSVLQTLWSV  162 (285)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHT
T ss_pred             CceEEEECchhhcccCHHHHHHHHHHH
Confidence            9999999999877 5555666655543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=7.6e-13  Score=94.88  Aligned_cols=102  Identities=11%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      +....+..++.+.....++.+|||+|||+|..++.+++.+.+|+++|.++.+++.+++|+..++.       .++.+...
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~~   90 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-------KNCQIIKG   90 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-------CSEEEEES
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------CcEEEEEC
Confidence            44455555555544445778999999999999999999778999999999999999999998862       23555444


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      ++.+     . .  ..++||+|+++++   .....++..+
T Consensus        91 d~~~-----~-~--~~~~~D~i~~~~~---~~~~~~l~~~  119 (183)
T 2yxd_A           91 RAED-----V-L--DKLEFNKAFIGGT---KNIEKIIEIL  119 (183)
T ss_dssp             CHHH-----H-G--GGCCCSEEEECSC---SCHHHHHHHH
T ss_pred             Cccc-----c-c--cCCCCcEEEECCc---ccHHHHHHHH
Confidence            4332     1 1  2358999999998   3444444443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.41  E-value=4.8e-12  Score=98.35  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ..+.+.+.....++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++++..++.      ..++.+...++.+
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~  133 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS------PRRKEVRIQGWEE  133 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC------SSCEEEEECCGGG
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEECCHHH
Confidence            3444555555557889999999999999999987 89999999999999999999988762      2245566555432


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccC
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                                ..++||+|+++.++.+.
T Consensus       134 ----------~~~~fD~v~~~~~~~~~  150 (302)
T 3hem_A          134 ----------FDEPVDRIVSLGAFEHF  150 (302)
T ss_dssp             ----------CCCCCSEEEEESCGGGT
T ss_pred             ----------cCCCccEEEEcchHHhc
Confidence                      15789999999998773

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.40  E-value=2.2e-13  Score=100.21  Aligned_cols=97  Identities=16%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             chHHHHHHHHhhCCCC-CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDV-LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~-~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      |.+..+.+++.+.... .++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..++            .
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------------~   79 (215)
T 4dzr_A           12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG------------A   79 (215)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------------
T ss_pred             ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC------------C
Confidence            3445566665543322 46789999999999999999987  5699999999999999999998875            2


Q ss_pred             EEeecCCCchhhHHHh--hCCCCCcEEEEcccccc
Q 030274          134 AKLEWGNSDQINKIIQ--KYPGGFDLILGADIYIL  166 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~--~~~~~fD~Ii~~d~~y~  166 (180)
                       ++.+...+....+..  ...++||+|++++|++.
T Consensus        80 -~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~  113 (215)
T 4dzr_A           80 -VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIP  113 (215)
T ss_dssp             ----CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC
T ss_pred             -ceEEEEcchHhhhhhhhhccCcccEEEECCCCCC
Confidence             344444432222111  12378999999999765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.40  E-value=2.6e-12  Score=95.37  Aligned_cols=92  Identities=16%  Similarity=0.190  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ....+.+.+.+...  ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++        .++.+...+
T Consensus        24 ~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~~~~~~~~d   93 (227)
T 1ve3_A           24 RIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--------SNVEFIVGD   93 (227)
T ss_dssp             HHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCCEEEECC
T ss_pred             HHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------CCceEEECc
Confidence            34555666666543  47799999999999999999988899999999999999999998774        245566666


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .....       ...++||+|++++++..
T Consensus        94 ~~~~~-------~~~~~~D~v~~~~~~~~  115 (227)
T 1ve3_A           94 ARKLS-------FEDKTFDYVIFIDSIVH  115 (227)
T ss_dssp             TTSCC-------SCTTCEEEEEEESCGGG
T ss_pred             hhcCC-------CCCCcEEEEEEcCchHh
Confidence            55421       12468999999998433

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.40  E-value=2.8e-12  Score=99.32  Aligned_cols=95  Identities=12%  Similarity=0.067  Sum_probs=73.4

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+.      ..++.+...++....       
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~-------  145 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL------ADNITVKYGSFLEIP-------  145 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC------TTTEEEEECCTTSCS-------
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC------CcceEEEEcCcccCC-------
Confidence            4447789999999999999998886 78999999999999999999988762      235667766665431       


Q ss_pred             hCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          150 KYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ...++||+|+++.++++ .+...+++.+.+
T Consensus       146 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~  175 (297)
T 2o57_A          146 CEDNSYDFIWSQDAFLHSPDKLKVFQECAR  175 (297)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred             CCCCCEeEEEecchhhhcCCHHHHHHHHHH
Confidence            13468999999999887 555555555544

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.40  E-value=3.5e-12  Score=96.72  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.|++|+..++..      .++.+...+..+.- ...+ +..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------~~v~~~~~d~~~~~-~~~~-~~~  136 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS------DLIKVVKVPQKTLL-MDAL-KEE  136 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT------TTEEEEECCTTCSS-TTTS-TTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC------ccEEEEEcchhhhh-hhhh-hcc
Confidence            5679999999999999888865  689999999999999999999988632      23666665533210 0000 101


Q ss_pred             -CCCCcEEEEccccccC
Q 030274          152 -PGGFDLILGADIYILY  167 (180)
Q Consensus       152 -~~~fD~Ii~~d~~y~~  167 (180)
                       ..+||+|++++|++..
T Consensus       137 ~~~~fD~i~~npp~~~~  153 (254)
T 2h00_A          137 SEIIYDFCMCNPPFFAN  153 (254)
T ss_dssp             CSCCBSEEEECCCCC--
T ss_pred             cCCcccEEEECCCCccC
Confidence             2589999999998763

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.40  E-value=2.5e-12  Score=101.93  Aligned_cols=91  Identities=18%  Similarity=0.311  Sum_probs=69.8

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ..+++.+.....++.+|||+|||+|.+++.+++.+. +|+++|.++ +++.+++|++.++.      ..++.+...+..+
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~------~~~i~~~~~d~~~  124 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL------EDTITLIKGKIEE  124 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC------TTTEEEEESCTTT
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC------CCcEEEEEeeHHH
Confidence            445666665556788999999999999999998875 999999996 99999999998863      2356676665554


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..       ...++||+|+++.+.|.
T Consensus       125 ~~-------~~~~~~D~Ivs~~~~~~  143 (340)
T 2fyt_A          125 VH-------LPVEKVDVIISEWMGYF  143 (340)
T ss_dssp             SC-------CSCSCEEEEEECCCBTT
T ss_pred             hc-------CCCCcEEEEEEcCchhh
Confidence            31       12368999999986544

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.40  E-value=2.2e-12  Score=99.19  Aligned_cols=96  Identities=18%  Similarity=0.285  Sum_probs=72.4

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      -|.+..+.+++.+... .++.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.+++|+..++.       .++.+
T Consensus        92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-------~~v~~  163 (276)
T 2b3t_A           92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-------KNIHI  163 (276)
T ss_dssp             CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-------CSEEE
T ss_pred             CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CceEE
Confidence            3556777777665433 35679999999999999999865  57999999999999999999998862       13555


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ...++...        ...++||+|++++|+...
T Consensus       164 ~~~d~~~~--------~~~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          164 LQSDWFSA--------LAGQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             ECCSTTGG--------GTTCCEEEEEECCCCBCT
T ss_pred             EEcchhhh--------cccCCccEEEECCCCCCc
Confidence            55554432        124689999999987653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.40  E-value=2.5e-12  Score=98.47  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      ....+..++.......++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..++.       .++.+..
T Consensus        21 ~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~   93 (276)
T 3mgg_A           21 QAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-------KNVKFLQ   93 (276)
T ss_dssp             --CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-------CSEEEEE
T ss_pred             HHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CCcEEEE
Confidence            34566777776665567889999999999999999887  67999999999999999999988762       2355555


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .+....       +...++||+|+++.++++ .+...++..+.+.
T Consensus        94 ~d~~~~-------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  131 (276)
T 3mgg_A           94 ANIFSL-------PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKV  131 (276)
T ss_dssp             CCGGGC-------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             cccccC-------CCCCCCeeEEEEechhhhcCCHHHHHHHHHHH
Confidence            444332       123568999999999877 5555666655543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.40  E-value=4.2e-12  Score=98.00  Aligned_cols=102  Identities=9%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      +...+.......++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+        .++.+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------~~v~~~~~d~   81 (284)
T 3gu3_A           10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--------YDSEFLEGDA   81 (284)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--------SEEEEEESCT
T ss_pred             HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--------CceEEEEcch
Confidence            3333333344457789999999999999999986   5799999999999999999988764        2455665555


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ....        ..++||+|+++.++++ .+...+++.+.+.
T Consensus        82 ~~~~--------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  115 (284)
T 3gu3_A           82 TEIE--------LNDKYDIAICHAFLLHMTTPETMLQKMIHS  115 (284)
T ss_dssp             TTCC--------CSSCEEEEEEESCGGGCSSHHHHHHHHHHT
T ss_pred             hhcC--------cCCCeeEEEECChhhcCCCHHHHHHHHHHH
Confidence            5321        2468999999999877 5556666655543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.39  E-value=5e-12  Score=91.93  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=64.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++.       .++.+...++....        ..+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~~d~~~~~--------~~~   96 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL-------DNLHTRVVDLNNLT--------FDR   96 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-------TTEEEEECCGGGCC--------CCC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC-------CCcEEEEcchhhCC--------CCC
Confidence            567999999999999999998889999999999999999999988752       23555555444321        156


Q ss_pred             CCcEEEEccccccC
Q 030274          154 GFDLILGADIYILY  167 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~  167 (180)
                      +||+|+++.++++.
T Consensus        97 ~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           97 QYDFILSTVVLMFL  110 (199)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CceEEEEcchhhhC
Confidence            89999999998874

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.39  E-value=1.2e-12  Score=100.11  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=71.3

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHH---hcCCCCCCCCCcE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEH---HTSSENPNSDAGL  131 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~---n~~~~~~~~~~~~  131 (180)
                      -.+.+|+.|+.    ..++.+|||+|||+|.+++.+++..  .+|+++|+++.+++.+++|+..   ++.      ..++
T Consensus        23 ~D~~lL~~~~~----~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l------~~~v   92 (260)
T 2ozv_A           23 MDAMLLASLVA----DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF------SARI   92 (260)
T ss_dssp             CHHHHHHHTCC----CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT------GGGE
T ss_pred             cHHHHHHHHhc----ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC------cceE
Confidence            45666676653    2356799999999999999999874  6999999999999999999988   652      2347


Q ss_pred             EEEEeecCCCchhhHHH--hhCCCCCcEEEEccccccC
Q 030274          132 AVAKLEWGNSDQINKII--QKYPGGFDLILGADIYILY  167 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~--~~~~~~fD~Ii~~d~~y~~  167 (180)
                      .+...++.+..  ....  .....+||+|++++|++..
T Consensus        93 ~~~~~D~~~~~--~~~~~~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A           93 EVLEADVTLRA--KARVEAGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             EEEECCTTCCH--HHHHHTTCCTTCEEEEEECCCC---
T ss_pred             EEEeCCHHHHh--hhhhhhccCCCCcCEEEECCCCcCC
Confidence            77777776541  1000  0124689999999998764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.39  E-value=2.8e-12  Score=97.32  Aligned_cols=97  Identities=13%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      +++....+.+.+.+.....++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...         .++.+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------~~~~~  106 (266)
T 3ujc_A           36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---------NKIIF  106 (266)
T ss_dssp             CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---------TTEEE
T ss_pred             cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---------CCeEE
Confidence            56666677777777666667889999999999999999986 889999999999999999875442         24666


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ...++....       ...++||+|+++.++++.
T Consensus       107 ~~~d~~~~~-------~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A          107 EANDILTKE-------FPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             EECCTTTCC-------CCTTCEEEEEEESCGGGS
T ss_pred             EECccccCC-------CCCCcEEEEeHHHHHHhc
Confidence            666665431       135689999999998875

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.39  E-value=1.6e-12  Score=103.43  Aligned_cols=91  Identities=13%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ..+.+.++....++++|||+|||+|..++.+++.+. +|+++|.+ .+++.|+++++.++.      ..++.+...++.+
T Consensus        54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~------~~~v~~~~~d~~~  126 (349)
T 3q7e_A           54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKL------DHVVTIIKGKVEE  126 (349)
T ss_dssp             HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTC------TTTEEEEESCTTT
T ss_pred             HHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCC------CCcEEEEECcHHH
Confidence            344455544456788999999999999999999875 99999999 599999999999873      2347777777665


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..       ...++||+|+++.+.|.
T Consensus       127 ~~-------~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A          127 VE-------LPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             CC-------CSSSCEEEEEECCCBBT
T ss_pred             cc-------CCCCceEEEEEcccccc
Confidence            42       12478999999887555

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.39  E-value=9.6e-13  Score=99.00  Aligned_cols=79  Identities=11%  Similarity=-0.004  Sum_probs=63.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|++.++.      ..++.+...++...      .  ...
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~------~--~~~  143 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI------ADKIEFICGDFLLL------A--SFL  143 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------GGGEEEEESCHHHH------G--GGC
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC------CcCeEEEECChHHh------c--ccC
Confidence            678999999999999999999999999999999999999999998862      12455554443321      1  246


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|++++++.+
T Consensus       144 ~~D~v~~~~~~~~  156 (241)
T 3gdh_A          144 KADVVFLSPPWGG  156 (241)
T ss_dssp             CCSEEEECCCCSS
T ss_pred             CCCEEEECCCcCC
Confidence            8999999998766

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.39  E-value=4e-12  Score=90.95  Aligned_cols=91  Identities=13%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..++..      .++ ....+...  .    ++
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------~~~-~~~~d~~~--~----~~   89 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS------DRI-AVQQGAPR--A----FD   89 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT------TSE-EEECCTTG--G----GG
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC------CCE-EEecchHh--h----hh
Confidence            346779999999999999998886  679999999999999999999887621      234 33332221  1    22


Q ss_pred             hCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          150 KYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      ...++||+|+++.++++   ..+++.+.+
T Consensus        90 ~~~~~~D~i~~~~~~~~---~~~l~~~~~  115 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGLTA---PGVFAAAWK  115 (178)
T ss_dssp             GCCSCCSEEEECC-TTC---TTHHHHHHH
T ss_pred             ccCCCCCEEEECCcccH---HHHHHHHHH
Confidence            23378999999998866   444444443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.38  E-value=4.5e-12  Score=100.77  Aligned_cols=101  Identities=11%  Similarity=0.232  Sum_probs=74.3

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ...+.+.+.....++.+|||+|||+|.+++.+++.+ .+|+++|.++ +++.++++++.++.      ..++.+...++.
T Consensus        37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l------~~~v~~~~~d~~  109 (348)
T 2y1w_A           37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL------TDRIVVIPGKVE  109 (348)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC------TTTEEEEESCTT
T ss_pred             HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC------CCcEEEEEcchh
Confidence            344555555555578899999999999999999886 4999999996 88999999998863      235777766665


Q ss_pred             CCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      +..        .+++||+|+++.+.++.........+
T Consensus       110 ~~~--------~~~~~D~Ivs~~~~~~~~~~~~~~~l  138 (348)
T 2y1w_A          110 EVS--------LPEQVDIIISEPMGYMLFNERMLESY  138 (348)
T ss_dssp             TCC--------CSSCEEEEEECCCBTTBTTTSHHHHH
T ss_pred             hCC--------CCCceeEEEEeCchhcCChHHHHHHH
Confidence            432        23689999999987764333334444

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.38  E-value=2e-12  Score=95.81  Aligned_cols=87  Identities=16%  Similarity=0.162  Sum_probs=64.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|..+..+++.+  .+|+++|+++.+++.+++++..++....  ...++.+...+....+       ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~--~~~~v~~~~~d~~~~~-------~~   99 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN--QWERLQLIQGALTYQD-------KR   99 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH--HHTTEEEEECCTTSCC-------GG
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc--cCcceEEEeCCccccc-------cc
Confidence            56799999999999999999875  6999999999999999999876642100  0014666666553321       12


Q ss_pred             CCCCcEEEEccccccCCc
Q 030274          152 PGGFDLILGADIYILYNR  169 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~  169 (180)
                      .++||+|+++.++++-..
T Consensus       100 ~~~fD~v~~~~~l~~~~~  117 (217)
T 3jwh_A          100 FHGYDAATVIEVIEHLDL  117 (217)
T ss_dssp             GCSCSEEEEESCGGGCCH
T ss_pred             CCCcCEEeeHHHHHcCCH
Confidence            368999999999887543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.38  E-value=2.2e-12  Score=95.49  Aligned_cols=106  Identities=14%  Similarity=0.118  Sum_probs=77.5

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      |.....+.+.+.    ..++.+|||+|||+|..+..+++.+   .+|+++|.++.+++.+++++..++.       .++.
T Consensus        23 ~~~~~~~~~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~   91 (219)
T 3dh0_A           23 LFDPEKVLKEFG----LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-------KNVE   91 (219)
T ss_dssp             TCCHHHHHHHHT----CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-------TTEE
T ss_pred             ccCHHHHHHHhC----CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-------CcEE
Confidence            444445555542    2367799999999999999998875   7999999999999999999988762       2466


Q ss_pred             EEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +...++....       ...++||+|+++.++++ .+...+++.+.+.
T Consensus        92 ~~~~d~~~~~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  132 (219)
T 3dh0_A           92 VLKSEENKIP-------LPDNTVDFIFMAFTFHELSEPLKFLEELKRV  132 (219)
T ss_dssp             EEECBTTBCS-------SCSSCEEEEEEESCGGGCSSHHHHHHHHHHH
T ss_pred             EEecccccCC-------CCCCCeeEEEeehhhhhcCCHHHHHHHHHHH
Confidence            6666655421       13568999999999877 4555555555443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.38  E-value=5.6e-13  Score=112.37  Aligned_cols=81  Identities=16%  Similarity=0.282  Sum_probs=62.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||||||.|+++..+|+.|++|+|+|.++.+++.|+..+..++.       .++.+.   -+..+++..  ...++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-------~~~~~~---~~~~~~~~~--~~~~~  133 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-------FAAEFR---VGRIEEVIA--ALEEG  133 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-------SEEEEE---ECCHHHHHH--HCCTT
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-------CceEEE---ECCHHHHhh--hccCC
Confidence            567999999999999999999999999999999999999999887751       123333   233222211  12457


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|+|..+++|
T Consensus       134 ~fD~v~~~e~~eh  146 (569)
T 4azs_A          134 EFDLAIGLSVFHH  146 (569)
T ss_dssp             SCSEEEEESCHHH
T ss_pred             CccEEEECcchhc
Confidence            8999999999988

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.38  E-value=3.3e-12  Score=93.80  Aligned_cols=96  Identities=20%  Similarity=0.238  Sum_probs=73.9

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      +...++....+.+++.....  ++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..++..       +
T Consensus        40 ~~~~~~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------~  110 (205)
T 3grz_A           40 GTGNHQTTQLAMLGIERAMV--KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-------D  110 (205)
T ss_dssp             --CCHHHHHHHHHHHHHHCS--SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-------C
T ss_pred             CCCCCccHHHHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------c
Confidence            44456777888888876542  678999999999999999998864 9999999999999999999988621       2


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      +.+...++...         ..++||+|+++.++.
T Consensus       111 v~~~~~d~~~~---------~~~~fD~i~~~~~~~  136 (205)
T 3grz_A          111 IALQKTSLLAD---------VDGKFDLIVANILAE  136 (205)
T ss_dssp             CEEEESSTTTT---------CCSCEEEEEEESCHH
T ss_pred             eEEEecccccc---------CCCCceEEEECCcHH
Confidence            55665555432         247899999998764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.38  E-value=6.9e-12  Score=92.09  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=61.7

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ..++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..++.        ++.+...++..          
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------~~~~~~~d~~~----------  108 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--------KFKVFIGDVSE----------  108 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--------SEEEEESCGGG----------
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--------CEEEEECchHH----------
Confidence            34678999999999999999998864 799999999999999999988751        34444443332          


Q ss_pred             CCCCCcEEEEccccccC
Q 030274          151 YPGGFDLILGADIYILY  167 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~  167 (180)
                      .+.+||+|++++|++..
T Consensus       109 ~~~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A          109 FNSRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             CCCCCSEEEECCCCSSS
T ss_pred             cCCCCCEEEEcCCCccc
Confidence            13589999999997664

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.38  E-value=1.2e-11  Score=95.30  Aligned_cols=77  Identities=13%  Similarity=0.187  Sum_probs=61.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|++.|+..      .++.+...+..+..        ..
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~------~~v~~~~~D~~~~~--------~~  190 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------DRMSAYNMDNRDFP--------GE  190 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------TTEEEECSCTTTCC--------CC
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC------ceEEEEECCHHHhc--------cc
Confidence            578999999999999999999876 6999999999999999999999732      23445444443321        14


Q ss_pred             CCCcEEEEcccc
Q 030274          153 GGFDLILGADIY  164 (180)
Q Consensus       153 ~~fD~Ii~~d~~  164 (180)
                      .+||+|+++++.
T Consensus       191 ~~fD~Vi~~~p~  202 (278)
T 2frn_A          191 NIADRILMGYVV  202 (278)
T ss_dssp             SCEEEEEECCCS
T ss_pred             CCccEEEECCch
Confidence            689999998773

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.38  E-value=6.8e-12  Score=92.48  Aligned_cols=80  Identities=9%  Similarity=0.044  Sum_probs=61.8

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|++.++..      .++.+...+..+.  +     ..
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~------~~v~~~~~d~~~~--~-----~~  119 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLS------PRMRAVQGTAPAA--L-----AD  119 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCT------TTEEEEESCTTGG--G-----TT
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC------CCEEEEeCchhhh--c-----cc
Confidence            346789999999999999999988899999999999999999999988621      2455555444331  1     12


Q ss_pred             CCCCcEEEEcccc
Q 030274          152 PGGFDLILGADIY  164 (180)
Q Consensus       152 ~~~fD~Ii~~d~~  164 (180)
                      ..+||+|+++..+
T Consensus       120 ~~~~D~v~~~~~~  132 (204)
T 3njr_A          120 LPLPEAVFIGGGG  132 (204)
T ss_dssp             SCCCSEEEECSCC
T ss_pred             CCCCCEEEECCcc
Confidence            3479999988744

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.38  E-value=4.4e-12  Score=97.76  Aligned_cols=81  Identities=22%  Similarity=0.429  Sum_probs=65.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++++..++.        ++.+...+.....        ..+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--------~~~~~~~d~~~~~--------~~~  183 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--------NISTALYDINAAN--------IQE  183 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--------CEEEEECCGGGCC--------CCS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--------ceEEEEecccccc--------ccC
Confidence            677999999999999999999999999999999999999999998861        3555554444321        256


Q ss_pred             CCcEEEEccccccCCch
Q 030274          154 GFDLILGADIYILYNRS  170 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~~  170 (180)
                      +||+|+++.++++....
T Consensus       184 ~fD~i~~~~~~~~~~~~  200 (286)
T 3m70_A          184 NYDFIVSTVVFMFLNRE  200 (286)
T ss_dssp             CEEEEEECSSGGGSCGG
T ss_pred             CccEEEEccchhhCCHH
Confidence            89999999998875433

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.37  E-value=2.9e-12  Score=94.31  Aligned_cols=91  Identities=12%  Similarity=0.130  Sum_probs=68.4

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +...+.+.....++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++|+..++.       .++.+...++...
T Consensus        65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~  137 (210)
T 3lbf_A           65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL-------HNVSTRHGDGWQG  137 (210)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTC-------CSEEEEESCGGGC
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-------CceEEEECCcccC
Confidence            333333333445788999999999999999999999999999999999999999998762       2455555554432


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .       ...++||+|+++.++.+
T Consensus       138 ~-------~~~~~~D~i~~~~~~~~  155 (210)
T 3lbf_A          138 W-------QARAPFDAIIVTAAPPE  155 (210)
T ss_dssp             C-------GGGCCEEEEEESSBCSS
T ss_pred             C-------ccCCCccEEEEccchhh
Confidence            1       12468999999987755

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.37  E-value=2.8e-12  Score=106.00  Aligned_cols=102  Identities=11%  Similarity=0.218  Sum_probs=76.4

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ..+.+.+.+.....++.+|||+|||+|.+++.+++.+ .+|+++|.++ +++.|++|++.++.      ..++.+...++
T Consensus       144 ~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl------~~~v~~~~~d~  216 (480)
T 3b3j_A          144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL------TDRIVVIPGKV  216 (480)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC------TTTEEEEESCT
T ss_pred             HHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC------CCcEEEEECch
Confidence            4445555555444577899999999999999999876 5999999998 99999999999873      24577777777


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                      .+..        .+++||+|+++.++|+.........+
T Consensus       217 ~~~~--------~~~~fD~Ivs~~~~~~~~~e~~~~~l  246 (480)
T 3b3j_A          217 EEVS--------LPEQVDIIISEPMGYMLFNERMLESY  246 (480)
T ss_dssp             TTCC--------CSSCEEEEECCCCHHHHTCHHHHHHH
T ss_pred             hhCc--------cCCCeEEEEEeCchHhcCcHHHHHHH
Confidence            6531        24589999999987774444444444

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.37  E-value=1.9e-12  Score=96.95  Aligned_cols=103  Identities=17%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ..+..++....  .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++...+      ...++.+...++.
T Consensus        54 ~~l~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~  125 (235)
T 3lcc_A           54 PLIVHLVDTSS--LPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSP------KAEYFSFVKEDVF  125 (235)
T ss_dssp             HHHHHHHHTTC--SCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSG------GGGGEEEECCCTT
T ss_pred             HHHHHHHHhcC--CCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccC------CCcceEEEECchh
Confidence            34555554432  244599999999999999999988999999999999999999987642      1234666666655


Q ss_pred             CCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHH
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQ  178 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~  178 (180)
                      ...        ...+||+|+++.++++.   +...+++.+.+
T Consensus       126 ~~~--------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~  159 (235)
T 3lcc_A          126 TWR--------PTELFDLIFDYVFFCAIEPEMRPAWAKSMYE  159 (235)
T ss_dssp             TCC--------CSSCEEEEEEESSTTTSCGGGHHHHHHHHHH
T ss_pred             cCC--------CCCCeeEEEEChhhhcCCHHHHHHHHHHHHH
Confidence            432        24589999999998774   33344444443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.37  E-value=3.6e-12  Score=96.44  Aligned_cols=97  Identities=16%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +.+.....++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++...          ++.+...+.....  
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~d~~~~~--  103 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP----------VVCYEQKAIEDIA--  103 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCT----------TEEEEECCGGGCC--
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccC----------CeEEEEcchhhCC--
Confidence            44444445788999999999999999998876 9999999999999999886522          3556655544321  


Q ss_pred             hHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          145 NKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                           ...++||+|+++.++++ .+...+++.+.+.
T Consensus       104 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  134 (253)
T 3g5l_A          104 -----IEPDAYNVVLSSLALHYIASFDDICKKVYIN  134 (253)
T ss_dssp             -----CCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             -----CCCCCeEEEEEchhhhhhhhHHHHHHHHHHH
Confidence                 13578999999999877 5556666655543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.37  E-value=7e-12  Score=95.06  Aligned_cols=105  Identities=11%  Similarity=0.129  Sum_probs=75.4

Q ss_pred             HHHHHHHhh-CCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSK-NPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~-~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ..+.+.+.. .....++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++ ...       ..++.+...++
T Consensus        24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~-------~~~~~~~~~d~   95 (263)
T 2yqz_A           24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV-------DRKVQVVQADA   95 (263)
T ss_dssp             HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS-------CTTEEEEESCT
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc-------CCceEEEEccc
Confidence            344455532 223346789999999999999999988899999999999999999987 221       23466666666


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ....       ...++||+|+++.++++ .+....+..+.+.
T Consensus        96 ~~~~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  130 (263)
T 2yqz_A           96 RAIP-------LPDESVHGVIVVHLWHLVPDWPKVLAEAIRV  130 (263)
T ss_dssp             TSCC-------SCTTCEEEEEEESCGGGCTTHHHHHHHHHHH
T ss_pred             ccCC-------CCCCCeeEEEECCchhhcCCHHHHHHHHHHH
Confidence            5421       13468999999999887 4555555555443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.37  E-value=1.1e-12  Score=99.84  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      ||....+.+....+++.+..  .++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|+..|+.        .
T Consensus        99 fgtg~~~tt~~~~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~--------~  168 (254)
T 2nxc_A           99 FGTGHHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--------R  168 (254)
T ss_dssp             ---CCSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC--------C
T ss_pred             ccCCCCHHHHHHHHHHHHhc--CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC--------c
Confidence            45556677777777776553  3678999999999999999999888999999999999999999999862        1


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      +.+...++.     ..+   ..++||+|+++.+.
T Consensus       169 v~~~~~d~~-----~~~---~~~~fD~Vv~n~~~  194 (254)
T 2nxc_A          169 PRFLEGSLE-----AAL---PFGPFDLLVANLYA  194 (254)
T ss_dssp             CEEEESCHH-----HHG---GGCCEEEEEEECCH
T ss_pred             EEEEECChh-----hcC---cCCCCCEEEECCcH
Confidence            333332221     111   24589999998643

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.37  E-value=1e-11  Score=95.66  Aligned_cols=105  Identities=10%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHh-hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCS-RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      +...+.+.+.+.....++.+|||+|||+|..+..++ +.+.+|+++|+++.+++.+++++...+.      ..++.+...
T Consensus        48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~------~~~~~~~~~  121 (287)
T 1kpg_A           48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN------LRSKRVLLA  121 (287)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC------CSCEEEEES
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------CCCeEEEEC
Confidence            334455666666555678899999999999999888 5688999999999999999999887652      224555554


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHH
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQ  178 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~  178 (180)
                      ++..          .+++||+|++..++++.   +....++.+.+
T Consensus       122 d~~~----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~  156 (287)
T 1kpg_A          122 GWEQ----------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHR  156 (287)
T ss_dssp             CGGG----------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHH
T ss_pred             Chhh----------CCCCeeEEEEeCchhhcChHHHHHHHHHHHH
Confidence            4421          13789999999998774   33455555444

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.36  E-value=1.1e-12  Score=100.29  Aligned_cols=96  Identities=14%  Similarity=0.208  Sum_probs=70.8

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.++|.+...  .+.+|||||||+|..+..+++.+.+|+++|.|+.|++.++++             .++.+...+..+
T Consensus        28 ~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------------~~v~~~~~~~e~   92 (257)
T 4hg2_A           28 ALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------------PRVTYAVAPAED   92 (257)
T ss_dssp             HHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------------TTEEEEECCTTC
T ss_pred             HHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------------CCceeehhhhhh
Confidence            45667766543  456899999999999999999999999999999999877532             235565555443


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      .       +...++||+|+++.++++.+....+..+.+
T Consensus        93 ~-------~~~~~sfD~v~~~~~~h~~~~~~~~~e~~r  123 (257)
T 4hg2_A           93 T-------GLPPASVDVAIAAQAMHWFDLDRFWAELRR  123 (257)
T ss_dssp             C-------CCCSSCEEEEEECSCCTTCCHHHHHHHHHH
T ss_pred             h-------cccCCcccEEEEeeehhHhhHHHHHHHHHH
Confidence            2       124679999999999988666655555443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.36  E-value=9e-12  Score=96.68  Aligned_cols=110  Identities=9%  Similarity=0.102  Sum_probs=77.0

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHh---hcCCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEe
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCS---RFCREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKL  136 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la---~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~  136 (180)
                      .+.+.+.+... .++.+|||+|||+|..+..++   ..+.+|+++|+++.+++.+++++..+ +      ...++.+...
T Consensus        24 ~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~~v~~~~~   96 (299)
T 3g5t_A           24 DFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD------TYKNVSFKIS   96 (299)
T ss_dssp             HHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-------CCTTEEEEEC
T ss_pred             HHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC------CCCceEEEEc
Confidence            34445544322 267899999999999999999   45789999999999999999999886 2      1245777777


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      ++.+.... .......++||+|+++.++++.+....++.+.+
T Consensus        97 d~~~~~~~-~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~  137 (299)
T 3g5t_A           97 SSDDFKFL-GADSVDKQKIDMITAVECAHWFDFEKFQRSAYA  137 (299)
T ss_dssp             CTTCCGGG-CTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CHHhCCcc-ccccccCCCeeEEeHhhHHHHhCHHHHHHHHHH
Confidence            77654210 000001268999999999887755555555544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.35  E-value=1.2e-11  Score=96.66  Aligned_cols=103  Identities=14%  Similarity=0.168  Sum_probs=74.8

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ....+.+.+.....++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+.      ..++.+...++
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~  149 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT------NRSRQVLLQGW  149 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC------SSCEEEEESCG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEECCh
Confidence            344555655555557889999999999999999886 88999999999999999999887652      12355554443


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHH
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQ  178 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~  178 (180)
                      .+          .+++||+|+++.++++.   +....++.+.+
T Consensus       150 ~~----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~  182 (318)
T 2fk8_A          150 ED----------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFN  182 (318)
T ss_dssp             GG----------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHH
T ss_pred             HH----------CCCCcCEEEEeChHHhcCHHHHHHHHHHHHH
Confidence            22          13689999999998774   33444444433

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=1.2e-12  Score=99.76  Aligned_cols=99  Identities=8%  Similarity=-0.070  Sum_probs=72.4

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.+.+.+.....++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++.             ++.+...++..
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------------~~~~~~~d~~~   87 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------------QVEWFTGYAEN   87 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------------TEEEECCCTTS
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------------CCEEEECchhh
Confidence            45555554443446789999999999999999998899999999999988776653             24455555543


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ..       ...++||+|+++.++++ .+...+++.+.+.
T Consensus        88 ~~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  120 (261)
T 3ege_A           88 LA-------LPDKSVDGVISILAIHHFSHLEKSFQEMQRI  120 (261)
T ss_dssp             CC-------SCTTCBSEEEEESCGGGCSSHHHHHHHHHHH
T ss_pred             CC-------CCCCCEeEEEEcchHhhccCHHHHHHHHHHH
Confidence            21       13568999999999877 5666666665544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.35  E-value=2.7e-12  Score=96.27  Aligned_cols=100  Identities=14%  Similarity=0.122  Sum_probs=73.6

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.+++.....  ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++...          .++.+...+...
T Consensus        42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----------~~~~~~~~d~~~  109 (242)
T 3l8d_A           42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG----------PDLSFIKGDLSS  109 (242)
T ss_dssp             THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB----------TTEEEEECBTTB
T ss_pred             HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc----------CCceEEEcchhc
Confidence            34455544332  677999999999999999999999999999999999999887422          246666666554


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ..       ...++||+|+++.++++ .+...++..+.+.
T Consensus       110 ~~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  142 (242)
T 3l8d_A          110 LP-------FENEQFEAIMAINSLEWTEEPLRALNEIKRV  142 (242)
T ss_dssp             CS-------SCTTCEEEEEEESCTTSSSCHHHHHHHHHHH
T ss_pred             CC-------CCCCCccEEEEcChHhhccCHHHHHHHHHHH
Confidence            32       13578999999999887 4555556555443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.34  E-value=2.9e-11  Score=97.59  Aligned_cols=118  Identities=14%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             EEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHH
Q 030274           28 TFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEE  107 (180)
Q Consensus        28 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~  107 (180)
                      .+.-.+..+.+..     .....+|.. |+ ......++.....  ++++|||+|||+|..++.+++.|++|+++|+|+.
T Consensus       177 ~v~E~g~~f~vd~-----~~~~~tG~f-~d-qr~~r~~l~~~~~--~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~  247 (393)
T 4dmg_A          177 EVEEDGLRFPIPL-----ALAQKTGYY-LD-QRENRRLFEAMVR--PGERVLDVYSYVGGFALRAARKGAYALAVDKDLE  247 (393)
T ss_dssp             EEEETTEEEEEET-----TTCCTTSSC-GG-GHHHHHHHHTTCC--TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEECCEEEEEec-----hhccccCcC-CC-HHHHHHHHHHHhc--CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHH
Confidence            4455666665542     112233432 22 2233444544432  4889999999999999999999888999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          108 VLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       108 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      +++.+++|++.|+..        ..+.   .+  +... .++...+.||+|++++|.+...
T Consensus       248 al~~a~~n~~~ng~~--------~~~~---~~--D~~~-~l~~~~~~fD~Ii~dpP~f~~~  294 (393)
T 4dmg_A          248 ALGVLDQAALRLGLR--------VDIR---HG--EALP-TLRGLEGPFHHVLLDPPTLVKR  294 (393)
T ss_dssp             HHHHHHHHHHHHTCC--------CEEE---ES--CHHH-HHHTCCCCEEEEEECCCCCCSS
T ss_pred             HHHHHHHHHHHhCCC--------CcEE---Ec--cHHH-HHHHhcCCCCEEEECCCcCCCC
Confidence            999999999999732        1122   22  2222 2222244599999999876643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.33  E-value=2e-12  Score=96.29  Aligned_cols=96  Identities=13%  Similarity=0.165  Sum_probs=69.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++...  ....++.+...+.....       ...+
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~d~~~~~-------~~~~  100 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQ--KTGGKAEFKVENASSLS-------FHDS  100 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCS--SSSCEEEEEECCTTSCC-------SCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCcc--ccCcceEEEEecccccC-------CCCC
Confidence            67799999999999999999999999999999999999999987765211  01123455555444321       1356


Q ss_pred             CCcEEEEccccccC-Cch---hhHHHHHH
Q 030274          154 GFDLILGADIYILY-NRS---LLMTSFFQ  178 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~-~~~---~l~~~~~~  178 (180)
                      +||+|+++.++++. +..   .+++.+.+
T Consensus       101 ~~D~v~~~~~l~~~~~~~~~~~~l~~~~~  129 (235)
T 3sm3_A          101 SFDFAVMQAFLTSVPDPKERSRIIKEVFR  129 (235)
T ss_dssp             CEEEEEEESCGGGCCCHHHHHHHHHHHHH
T ss_pred             ceeEEEEcchhhcCCCHHHHHHHHHHHHH
Confidence            89999999998884 444   34444433

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.33  E-value=1.4e-11  Score=98.84  Aligned_cols=93  Identities=14%  Similarity=0.053  Sum_probs=69.6

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC--eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR--EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~--~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ..++..+.... ..++.+|||+|||+|.+++.+++.+.  +|+++|+++.+++.|++|++.++.      ..++.+...+
T Consensus       204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl------~~~i~~~~~D  276 (373)
T 3tm4_A          204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV------LDKIKFIQGD  276 (373)
T ss_dssp             HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC------GGGCEEEECC
T ss_pred             HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC------CCceEEEECC
Confidence            45555544433 44678999999999999999999876  999999999999999999999873      1245555554


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..+.       +....+||+|++++|+..
T Consensus       277 ~~~~-------~~~~~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          277 ATQL-------SQYVDSVDFAISNLPYGL  298 (373)
T ss_dssp             GGGG-------GGTCSCEEEEEEECCCC-
T ss_pred             hhhC-------CcccCCcCEEEECCCCCc
Confidence            4432       123468999999998754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.33  E-value=1.2e-11  Score=92.37  Aligned_cols=90  Identities=18%  Similarity=0.285  Sum_probs=68.7

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..++         ++.+...+.....       
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~~~d~~~~~-------  105 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---------KVKYIEADYSKYD-------  105 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---------TEEEEESCTTTCC-------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---------CEEEEeCchhccC-------
Confidence            346789999999999999999887  7899999999999999999875542         4666666665432       


Q ss_pred             hCCCCCcEEEEccccccCCchh---hHHHHHH
Q 030274          150 KYPGGFDLILGADIYILYNRSL---LMTSFFQ  178 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~~~---l~~~~~~  178 (180)
                       ..++||+|+++.++++.....   +++.+.+
T Consensus       106 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~  136 (234)
T 3dtn_A          106 -FEEKYDMVVSALSIHHLEDEDKKELYKRSYS  136 (234)
T ss_dssp             -CCSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             -CCCCceEEEEeCccccCCHHHHHHHHHHHHH
Confidence             236899999999988854443   4444443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.33  E-value=4.5e-12  Score=100.00  Aligned_cols=90  Identities=13%  Similarity=0.271  Sum_probs=66.9

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      .+.+.+.....++++|||+|||+|.+++.+++.+. +|+++|.+ .+++.++++++.++.      ..++.+...+..+.
T Consensus        27 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~------~~~i~~~~~d~~~~   99 (328)
T 1g6q_1           27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGF------SDKITLLRGKLEDV   99 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTC------TTTEEEEESCTTTS
T ss_pred             HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCC------CCCEEEEECchhhc
Confidence            33443333334678999999999999999998874 99999999 599999999999873      23466666555543


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .       ...++||+|+++.+.|.
T Consensus       100 ~-------~~~~~~D~Ivs~~~~~~  117 (328)
T 1g6q_1          100 H-------LPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             C-------CSSSCEEEEEECCCBTT
T ss_pred             c-------CCCCcccEEEEeCchhh
Confidence            1       12368999999987655

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.33  E-value=4.3e-12  Score=95.16  Aligned_cols=89  Identities=18%  Similarity=0.181  Sum_probs=66.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++...+          ++.+...+.....       ..
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~d~~~~~-------~~  104 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----------GITYERADLDKLH-------LP  104 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS----------SEEEEECCGGGCC-------CC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC----------CceEEEcChhhcc-------CC
Confidence            3677999999999999999998887 9999999999999999875433          2555554443321       13


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      .++||+|+++.++++ .+...++..+.+
T Consensus       105 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~  132 (243)
T 3bkw_A          105 QDSFDLAYSSLALHYVEDVARLFRTVHQ  132 (243)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred             CCCceEEEEeccccccchHHHHHHHHHH
Confidence            468999999999877 455555555544

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.33  E-value=3.3e-12  Score=94.02  Aligned_cols=101  Identities=11%  Similarity=0.015  Sum_probs=67.3

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCC--CCC---CCCCcEEEE
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSS--ENP---NSDAGLAVA  134 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~--~~~---~~~~~~~~~  134 (180)
                      ..+.+++.... ..++.+|||+|||+|..+..+++.|.+|+++|+|+.|++.++++.......  ...   ....++.+.
T Consensus         9 ~~l~~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (203)
T 1pjz_A            9 KDLQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   87 (203)
T ss_dssp             HHHHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence            34555654422 236789999999999999999999999999999999999999875431000  000   001245566


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ..+..+... .     ..++||+|+++.++++.
T Consensus        88 ~~d~~~l~~-~-----~~~~fD~v~~~~~l~~l  114 (203)
T 1pjz_A           88 CGDFFALTA-R-----DIGHCAAFYDRAAMIAL  114 (203)
T ss_dssp             EECCSSSTH-H-----HHHSEEEEEEESCGGGS
T ss_pred             ECccccCCc-c-----cCCCEEEEEECcchhhC
Confidence            666554321 0     01589999998877663

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.32  E-value=4e-12  Score=98.65  Aligned_cols=92  Identities=14%  Similarity=0.219  Sum_probs=65.1

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCC---------------------------
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSE---------------------------  123 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~---------------------------  123 (180)
                      +++++|||||||+|..++.+++.  +.+|+++|+++.+++.|++|+...+...                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            46789999999999999999986  5799999999999999999977653110                           


Q ss_pred             ------------------------CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          124 ------------------------NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       124 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                                              ......++.+...++.....  .+.....++||+|++..++.+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~--~~~~~~~~~fD~I~~~~vl~~  189 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD--DLVEAQTPEYDVVLCLSLTKW  189 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSH--HHHTTCCCCEEEEEEESCHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCcc--ccccccCCCcCEEEEChHHHH
Confidence                                    00011467788877775431  112224679999999999744

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.32  E-value=6.9e-12  Score=89.81  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      .|.+..+.+++....  .++.+|||+|||+|.+++.+++.+ +|+++|+++.+++.      .+          ++.+..
T Consensus         7 ~~~~~~l~~~l~~~~--~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~------~~----------~~~~~~   67 (170)
T 3q87_B            7 GEDTYTLMDALEREG--LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES------HR----------GGNLVR   67 (170)
T ss_dssp             CHHHHHHHHHHHHHT--CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT------CS----------SSCEEE
T ss_pred             CccHHHHHHHHHhhc--CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc------cc----------CCeEEE
Confidence            345677777765421  256699999999999999999998 99999999999887      22          234555


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .++.+..        ..++||+|++++++++
T Consensus        68 ~d~~~~~--------~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           68 ADLLCSI--------NQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CSTTTTB--------CGGGCSEEEECCCCBT
T ss_pred             CChhhhc--------ccCCCCEEEECCCCcc
Confidence            5554421        2368999999998875

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=6.2e-11  Score=91.11  Aligned_cols=77  Identities=12%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|.+++.+++.+  .+|+++|.++.+++.+++|++.|+..       ++.+...+..+.       + 
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-------~~~~~~~d~~~~-------~-  182 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-------NVIPILADNRDV-------E-  182 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-------SEEEEESCGGGC-------C-
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------CEEEEECChHHc-------C-
Confidence            367899999999999999999874  49999999999999999999999732       344443333221       1 


Q ss_pred             CCCCCcEEEEcccc
Q 030274          151 YPGGFDLILGADIY  164 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~  164 (180)
                      ...+||+|+++++.
T Consensus       183 ~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          183 LKDVADRVIMGYVH  196 (272)
T ss_dssp             CTTCEEEEEECCCS
T ss_pred             ccCCceEEEECCcc
Confidence            14589999999885

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.32  E-value=6.5e-12  Score=94.19  Aligned_cols=85  Identities=15%  Similarity=0.240  Sum_probs=65.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++..           ++.+...+....        ...+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~v~~~~~d~~~~--------~~~~  102 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----------GITYIHSRFEDA--------QLPR  102 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----------CEEEEESCGGGC--------CCSS
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----------CeEEEEccHHHc--------CcCC
Confidence            567899999999999999999888999999999999999987433           244554443321        1356


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHH
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                      +||+|+++.++++ .+...+++.+.
T Consensus       103 ~fD~v~~~~~l~~~~~~~~~l~~~~  127 (250)
T 2p7i_A          103 RYDNIVLTHVLEHIDDPVALLKRIN  127 (250)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHH
T ss_pred             cccEEEEhhHHHhhcCHHHHHHHHH
Confidence            8999999999988 55555665554

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.31  E-value=2e-11  Score=98.35  Aligned_cols=84  Identities=10%  Similarity=0.006  Sum_probs=62.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++++|||+|||+|.+++.+|+.++ +|+++|+++.+++.|++|++.|+...     .++.+...+....  +.. .....
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~-----~~v~~~~~D~~~~--l~~-~~~~~  283 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDM-----ANHQLVVMDVFDY--FKY-ARRHH  283 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCC-----TTEEEEESCHHHH--HHH-HHHTT
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-----cceEEEECCHHHH--HHH-HHHhC
Confidence            678999999999999999998764 89999999999999999999997320     0344444332211  111 11224


Q ss_pred             CCCcEEEEccccc
Q 030274          153 GGFDLILGADIYI  165 (180)
Q Consensus       153 ~~fD~Ii~~d~~y  165 (180)
                      .+||+|+++||.+
T Consensus       284 ~~fD~Ii~DPP~~  296 (385)
T 2b78_A          284 LTYDIIIIDPPSF  296 (385)
T ss_dssp             CCEEEEEECCCCC
T ss_pred             CCccEEEECCCCC
Confidence            5899999999986

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.31  E-value=8.9e-12  Score=97.14  Aligned_cols=88  Identities=17%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+.+.+.....++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++|+..++.       .++.+...+.... 
T Consensus        31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-------~~v~~~~~D~~~~-  102 (299)
T 2h1r_A           31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-------NNLEVYEGDAIKT-  102 (299)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-------CCEEC----CCSS-
T ss_pred             HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-------CceEEEECchhhC-
Confidence            33333333334678999999999999999999889999999999999999999987651       2344544444432 


Q ss_pred             hhhHHHhhCCCCCcEEEEcccccc
Q 030274          143 QINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                              ...+||+|+++.|++.
T Consensus       103 --------~~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          103 --------VFPKFDVCTANIPYKI  118 (299)
T ss_dssp             --------CCCCCSEEEEECCGGG
T ss_pred             --------CcccCCEEEEcCCccc
Confidence                    1247999999988765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.31  E-value=9.4e-12  Score=91.30  Aligned_cols=79  Identities=9%  Similarity=0.036  Sum_probs=60.4

Q ss_pred             CCCeEEEeCCcCChHH-HHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTG-ILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~-l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|..+ ..+++.+.+|+++|.++.+++.+++++..++        .++.+...+.....       ...
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~~~~~~~~d~~~~~-------~~~   87 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--------FKLNISKGDIRKLP-------FKD   87 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--------CCCCEEECCTTSCC-------SCT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------CceEEEECchhhCC-------CCC
Confidence            5679999999999874 4556678899999999999999999988764        12445555554321       134


Q ss_pred             CCCcEEEEccccccC
Q 030274          153 GGFDLILGADIYILY  167 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~  167 (180)
                      ++||+|+++.++++-
T Consensus        88 ~~fD~v~~~~~l~~~  102 (209)
T 2p8j_A           88 ESMSFVYSYGTIFHM  102 (209)
T ss_dssp             TCEEEEEECSCGGGS
T ss_pred             CceeEEEEcChHHhC
Confidence            689999999988774

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.31  E-value=5.9e-11  Score=93.90  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=60.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|.+++. ++.+.+|+++|.++.+++.+++|++.|+..      .++.+...+....          ..
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~------~~v~~~~~D~~~~----------~~  257 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLE------HKIIPILSDVREV----------DV  257 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCT------TTEEEEESCGGGC----------CC
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEECChHHh----------cC
Confidence            678999999999999999 886679999999999999999999999731      2455554443321          16


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|++++|.+.
T Consensus       258 ~fD~Vi~dpP~~~  270 (336)
T 2yx1_A          258 KGNRVIMNLPKFA  270 (336)
T ss_dssp             CEEEEEECCTTTG
T ss_pred             CCcEEEECCcHhH
Confidence            8999999887654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.31  E-value=6.8e-12  Score=96.86  Aligned_cols=88  Identities=17%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|+|+.+++.+++++...+...   ...++.+...++....  ..+  ...+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~~~~~~~~d~~~~~--~~~--~~~~  129 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP---AFDKWVIEEANWLTLD--KDV--PAGD  129 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSH---HHHTCEEEECCGGGHH--HHS--CCTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhccccc---ccceeeEeecChhhCc--ccc--ccCC
Confidence            56799999999999999999999999999999999999999875442100   0012334444433211  000  2356


Q ss_pred             CCcEEEEc-ccccc-CC
Q 030274          154 GFDLILGA-DIYIL-YN  168 (180)
Q Consensus       154 ~fD~Ii~~-d~~y~-~~  168 (180)
                      +||+|+++ .++.+ .+
T Consensus       130 ~fD~V~~~g~~l~~~~~  146 (293)
T 3thr_A          130 GFDAVICLGNSFAHLPD  146 (293)
T ss_dssp             CEEEEEECTTCGGGSCC
T ss_pred             CeEEEEEcChHHhhcCc
Confidence            89999998 77766 44

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.31  E-value=2.3e-11  Score=98.19  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|.+++.+++.| .+|+++|+++.+++.+++|++.|+..     ..++.+...+..+   .........
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~-----~~~v~~~~~D~~~---~~~~~~~~~  291 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD-----LSKAEFVRDDVFK---LLRTYRDRG  291 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----GGGEEEEESCHHH---HHHHHHHTT
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ccceEEEECCHHH---HHHHHHhcC
Confidence            67899999999999999999986 59999999999999999999999720     1134444433221   111111124


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      .+||+|++++|.+.
T Consensus       292 ~~fD~Ii~dpP~~~  305 (396)
T 3c0k_A          292 EKFDVIVMDPPKFV  305 (396)
T ss_dssp             CCEEEEEECCSSTT
T ss_pred             CCCCEEEECCCCCC
Confidence            68999999998765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.30  E-value=1.1e-11  Score=94.27  Aligned_cols=100  Identities=10%  Similarity=-0.010  Sum_probs=65.5

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH----------hcCCCCCCCCCc
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEH----------HTSSENPNSDAG  130 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~----------n~~~~~~~~~~~  130 (180)
                      .+.+++.......++.+|||+|||+|..+..+|+.|.+|+++|+|+.+++.|+++...          ++.........+
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            4556654422223567999999999999999999999999999999999999766431          000000000134


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +.+...+.....      ....++||+|++..++.+
T Consensus       135 i~~~~~D~~~l~------~~~~~~FD~V~~~~~l~~  164 (252)
T 2gb4_A          135 ISLYCCSIFDLP------RANIGKFDRIWDRGALVA  164 (252)
T ss_dssp             EEEEESCTTTGG------GGCCCCEEEEEESSSTTT
T ss_pred             eEEEECccccCC------cccCCCEEEEEEhhhhhh
Confidence            555555544321      112368999999887655

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.30  E-value=7e-12  Score=91.73  Aligned_cols=73  Identities=14%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|+. +           +.+...+...          .
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-~-----------~~~~~~d~~~----------~  107 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-G-----------VNFMVADVSE----------I  107 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-T-----------SEEEECCGGG----------C
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-C-----------CEEEECcHHH----------C
Confidence            3677999999999999999998864 79999999999999999865 2           3344443332          1


Q ss_pred             CCCCcEEEEccccccC
Q 030274          152 PGGFDLILGADIYILY  167 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~  167 (180)
                      +.+||+|++++|+++.
T Consensus       108 ~~~~D~v~~~~p~~~~  123 (200)
T 1ne2_A          108 SGKYDTWIMNPPFGSV  123 (200)
T ss_dssp             CCCEEEEEECCCC---
T ss_pred             CCCeeEEEECCCchhc
Confidence            3689999999998774

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.30  E-value=7.1e-12  Score=96.60  Aligned_cols=79  Identities=13%  Similarity=0.153  Sum_probs=63.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|.+++.+|+.| ++|+++|.++.+++.+++|++.|+..      .++.+.+.|..+..        ..
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~------~~v~~~~~D~~~~~--------~~  190 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------DRMSAYNMDNRDFP--------GE  190 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------TTEEEECSCTTTCC--------CC
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEeCcHHHhc--------cc
Confidence            67899999999999999999887 59999999999999999999999843      34555554433221        24


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      +.||.|++++|.+.
T Consensus       191 ~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          191 NIADRILMGYVVRT  204 (278)
T ss_dssp             SCEEEEEECCCSSG
T ss_pred             cCCCEEEECCCCcH
Confidence            68999999988654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.29  E-value=1.4e-11  Score=90.69  Aligned_cols=85  Identities=18%  Similarity=0.214  Sum_probs=63.8

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ..+..++...   .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..             .+...++.
T Consensus        32 ~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~~d~~   95 (211)
T 3e23_A           32 ATLTKFLGEL---PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGR-------------PVRTMLFH   95 (211)
T ss_dssp             HHHHHHHTTS---CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTS-------------CCEECCGG
T ss_pred             HHHHHHHHhc---CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCC-------------ceEEeeec
Confidence            3444444433   2577999999999999999999899999999999999999998721             13443333


Q ss_pred             CCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      ...        ..++||+|+++.++++..
T Consensus        96 ~~~--------~~~~fD~v~~~~~l~~~~  116 (211)
T 3e23_A           96 QLD--------AIDAYDAVWAHACLLHVP  116 (211)
T ss_dssp             GCC--------CCSCEEEEEECSCGGGSC
T ss_pred             cCC--------CCCcEEEEEecCchhhcC
Confidence            221        357899999999988743

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.29  E-value=2.4e-11  Score=88.79  Aligned_cols=83  Identities=17%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++....   ++ +|||+|||+|..+..+++.+.+|+++|.++.+++.+++++..++.        ++.+...+....
T Consensus        21 l~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------~~~~~~~d~~~~   88 (202)
T 2kw5_A           21 LVSVANQIP---QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--------KITTVQSNLADF   88 (202)
T ss_dssp             HHHHHHHSC---SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--------CEEEECCBTTTB
T ss_pred             HHHHHHhCC---CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--------ceEEEEcChhhc
Confidence            444444332   45 999999999999999999889999999999999999999988751        344554444432


Q ss_pred             chhhHHHhhCCCCCcEEEEccc
Q 030274          142 DQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      .       ...++||+|+++.+
T Consensus        89 ~-------~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           89 D-------IVADAWEGIVSIFC  103 (202)
T ss_dssp             S-------CCTTTCSEEEEECC
T ss_pred             C-------CCcCCccEEEEEhh
Confidence            1       13468999999654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.29  E-value=3.5e-11  Score=90.81  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=58.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++++..++.        ++.+...++....        ...
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~v~~~~~d~~~~~--------~~~  104 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--------KIEFLQGDVLEIA--------FKN  104 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--------CCEEEESCGGGCC--------CCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--------ceEEEECChhhcc--------cCC
Confidence            567999999999999999999999999999999999999999987751        3445554443321        246


Q ss_pred             CCcEEEEcc
Q 030274          154 GFDLILGAD  162 (180)
Q Consensus       154 ~fD~Ii~~d  162 (180)
                      +||+|++..
T Consensus       105 ~fD~v~~~~  113 (252)
T 1wzn_A          105 EFDAVTMFF  113 (252)
T ss_dssp             CEEEEEECS
T ss_pred             CccEEEEcC
Confidence            899999863

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.29  E-value=1.6e-11  Score=95.38  Aligned_cols=89  Identities=12%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...         .++.+...+....
T Consensus        38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~---------~~v~vi~gD~l~~  108 (295)
T 3gru_A           38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY---------NNIEIIWGDALKV  108 (295)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHC---------SSEEEEESCTTTS
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccC---------CCeEEEECchhhC
Confidence            4444444444457789999999999999999999999999999999999999998732         2466666666553


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +-       ....||.|++|.|++.
T Consensus       109 ~~-------~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          109 DL-------NKLDFNKVVANLPYQI  126 (295)
T ss_dssp             CG-------GGSCCSEEEEECCGGG
T ss_pred             Cc-------ccCCccEEEEeCcccc
Confidence            21       1246999999988765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.29  E-value=1.1e-11  Score=89.25  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=72.8

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ....+..++.+.....++.+|||+|||+|..++.+++.+.+|+++|.++.+++.+++|+..++.      ..++.+...+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~~~d   90 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL------GDNVTLMEGD   90 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC------CTTEEEEESC
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCC------CcceEEEecC
Confidence            4444555555544445778999999999999999998889999999999999999999998862      1245554443


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      +..     . .+ ...+||+|+++.++.+  ...++..+.
T Consensus        91 ~~~-----~-~~-~~~~~D~v~~~~~~~~--~~~~l~~~~  121 (192)
T 1l3i_A           91 APE-----A-LC-KIPDIDIAVVGGSGGE--LQEILRIIK  121 (192)
T ss_dssp             HHH-----H-HT-TSCCEEEEEESCCTTC--HHHHHHHHH
T ss_pred             HHH-----h-cc-cCCCCCEEEECCchHH--HHHHHHHHH
Confidence            321     1 11 1248999999987532  344444443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.29  E-value=1.6e-11  Score=97.69  Aligned_cols=95  Identities=15%  Similarity=0.094  Sum_probs=72.5

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      -...++..+.......++.+|||+|||+|.+++.++..+   .+|+++|+++.+++.|++|++.++..       ++.+.
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-------~i~~~  259 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-------WIRFL  259 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-------TCEEE
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-------ceEEE
Confidence            336677766665555577899999999999999999864   79999999999999999999998731       45565


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..+..+.       +.....||+|++++|+..
T Consensus       260 ~~D~~~~-------~~~~~~~D~Ii~npPyg~  284 (354)
T 3tma_A          260 RADARHL-------PRFFPEVDRILANPPHGL  284 (354)
T ss_dssp             ECCGGGG-------GGTCCCCSEEEECCCSCC
T ss_pred             eCChhhC-------ccccCCCCEEEECCCCcC
Confidence            5554432       123456899999999754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.28  E-value=7.8e-12  Score=94.72  Aligned_cols=59  Identities=14%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHh
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      .+.+.+.......++.+|||+|||+|.+++.+++.    +.+|+++|+++.+++.|++|+..+
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            34444443332235679999999999999998876    579999999999999999998765

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.28  E-value=1.8e-11  Score=92.00  Aligned_cols=81  Identities=19%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++..++       ..++.+...++....       ...
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~-------~~~  144 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-------KRVRNYFCCGLQDFT-------PEP  144 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-------GGEEEEEECCGGGCC-------CCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-------CceEEEEEcChhhcC-------CCC
Confidence            57799999999999999988774 599999999999999999987753       123445544433221       124


Q ss_pred             CCCcEEEEccccccCC
Q 030274          153 GGFDLILGADIYILYN  168 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~  168 (180)
                      ++||+|+++.++++..
T Consensus       145 ~~fD~v~~~~~l~~~~  160 (241)
T 2ex4_A          145 DSYDVIWIQWVIGHLT  160 (241)
T ss_dssp             SCEEEEEEESCGGGSC
T ss_pred             CCEEEEEEcchhhhCC
Confidence            5899999999987743

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.28  E-value=1e-10  Score=94.47  Aligned_cols=86  Identities=14%  Similarity=0.070  Sum_probs=63.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|.+++.+++.| .+|+++|+++.+++.+++|++.|+..      .++.+...+...   .........
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~------~~v~~~~~d~~~---~~~~~~~~~  287 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE------DRMKFIVGSAFE---EMEKLQKKG  287 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG------GGEEEEESCHHH---HHHHHHHTT
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------ccceEEECCHHH---HHHHHHhhC
Confidence            67899999999999999999885 59999999999999999999998721      134444433221   111111235


Q ss_pred             CCCcEEEEccccccCC
Q 030274          153 GGFDLILGADIYILYN  168 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~  168 (180)
                      .+||+|++++|.+...
T Consensus       288 ~~fD~Vi~dpP~~~~~  303 (396)
T 2as0_A          288 EKFDIVVLDPPAFVQH  303 (396)
T ss_dssp             CCEEEEEECCCCSCSS
T ss_pred             CCCCEEEECCCCCCCC
Confidence            6899999999877643

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.28  E-value=2e-11  Score=90.32  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=71.9

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      .+.....+.+.+...    ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++. .          ++.+.
T Consensus        30 ~~~~~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~----------~~~~~   94 (220)
T 3hnr_A           30 VFAHYEDILEDVVNK----SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-K----------EFSIT   94 (220)
T ss_dssp             TTTTHHHHHHHHHHT----CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-T----------TCCEE
T ss_pred             HHHHHHHHHHHhhcc----CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-C----------ceEEE
Confidence            344444555555433    56799999999999999999989999999999999999998865 1          13345


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEccccccCCchh---hHHHHHHh
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSL---LMTSFFQA  179 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~---l~~~~~~a  179 (180)
                      ..+.....        ..++||+|+++.++++.....   ++..+.+.
T Consensus        95 ~~d~~~~~--------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~  134 (220)
T 3hnr_A           95 EGDFLSFE--------VPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQL  134 (220)
T ss_dssp             SCCSSSCC--------CCSCCSEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             eCChhhcC--------CCCCeEEEEECcchhcCChHHHHHHHHHHHHh
Confidence            44444321        127899999999988744332   45554443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.27  E-value=1.5e-11  Score=94.05  Aligned_cols=91  Identities=18%  Similarity=0.058  Sum_probs=66.2

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHH------HHHHHHHHHHHhcCCCCCCCCCcEEEEEee-cCCC
Q 030274           72 VLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEE------VLKILKKNIEHHTSSENPNSDAGLAVAKLE-WGNS  141 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~------~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~-~~~~  141 (180)
                      ..++.+|||+|||+|..+..+++. +  .+|+++|+++.      +++.+++++..++.      ..++.+...+ +...
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~  114 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL------GDRLTVHFNTNLSDD  114 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT------GGGEEEECSCCTTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC------CCceEEEECChhhhc
Confidence            347789999999999999999886 4  79999999987      99999999887642      1245555554 2211


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc-CCchhhH
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL-YNRSLLM  173 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~  173 (180)
                      .     .+...++||+|+++.++++ .+...++
T Consensus       115 ~-----~~~~~~~fD~v~~~~~l~~~~~~~~~~  142 (275)
T 3bkx_A          115 L-----GPIADQHFDRVVLAHSLWYFASANALA  142 (275)
T ss_dssp             C-----GGGTTCCCSEEEEESCGGGSSCHHHHH
T ss_pred             c-----CCCCCCCEEEEEEccchhhCCCHHHHH
Confidence            1     1223578999999999987 3443333

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.27  E-value=1.4e-11  Score=90.12  Aligned_cols=85  Identities=11%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             CCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           75 ASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      +.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++..            ++.+...++...       +...++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------------~~~~~~~d~~~~-------~~~~~~  102 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP------------SVTFHHGTITDL-------SDSPKR  102 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCT------------TSEEECCCGGGG-------GGSCCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC------------CCeEEeCccccc-------ccCCCC
Confidence            6799999999999999999989999999999999999998721            233444443321       224578


Q ss_pred             CcEEEEccccccC---CchhhHHHHHH
Q 030274          155 FDLILGADIYILY---NRSLLMTSFFQ  178 (180)
Q Consensus       155 fD~Ii~~d~~y~~---~~~~l~~~~~~  178 (180)
                      ||+|+++.++++.   +...+++.+.+
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~  129 (203)
T 3h2b_A          103 WAGLLAWYSLIHMGPGELPDALVALRM  129 (203)
T ss_dssp             EEEEEEESSSTTCCTTTHHHHHHHHHH
T ss_pred             eEEEEehhhHhcCCHHHHHHHHHHHHH
Confidence            9999999998774   44455554443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.27  E-value=5.7e-11  Score=95.49  Aligned_cols=84  Identities=18%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|++.|+..       ++.+...+..   ...........
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~-------~~~~~~~d~~---~~~~~~~~~~~  278 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-------NVRVLEANAF---DLLRRLEKEGE  278 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-------TEEEEESCHH---HHHHHHHHTTC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-------CceEEECCHH---HHHHHHHhcCC
Confidence            5679999999999999999988779999999999999999999999732       2434333222   11111112256


Q ss_pred             CCcEEEEccccccC
Q 030274          154 GFDLILGADIYILY  167 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~  167 (180)
                      +||+|++++|.+..
T Consensus       279 ~fD~Ii~dpP~~~~  292 (382)
T 1wxx_A          279 RFDLVVLDPPAFAK  292 (382)
T ss_dssp             CEEEEEECCCCSCC
T ss_pred             CeeEEEECCCCCCC
Confidence            89999999987664

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.26  E-value=1.4e-11  Score=93.88  Aligned_cols=91  Identities=13%  Similarity=0.248  Sum_probs=66.2

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+.+.+.....++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...         .++.+...|....+
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~---------~~v~~i~~D~~~~~   88 (255)
T 3tqs_A           18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ---------KNITIYQNDALQFD   88 (255)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC---------TTEEEEESCTTTCC
T ss_pred             HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC---------CCcEEEEcchHhCC
Confidence            333433333446789999999999999999999999999999999999999997642         24667766666543


Q ss_pred             hhhHHHhhCCCCCcEEEEcccccc
Q 030274          143 QINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                       +..+  ....+|| |++|.|+|-
T Consensus        89 -~~~~--~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           89 -FSSV--KTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             -GGGS--CCSSCEE-EEEECCHHH
T ss_pred             -HHHh--ccCCCeE-EEecCCccc
Confidence             1111  0134677 999998876

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.26  E-value=3.7e-11  Score=88.51  Aligned_cols=78  Identities=17%  Similarity=0.099  Sum_probs=62.1

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++    ++       ..++.+...+....        ...
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~-------~~~~~~~~~d~~~~--------~~~  105 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG-------LDNVEFRQQDLFDW--------TPD  105 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC-------CTTEEEEECCTTSC--------CCS
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC-------CCCeEEEecccccC--------CCC
Confidence            356799999999999999999989999999999999999987    22       12466666655443        135


Q ss_pred             CCCcEEEEccccccCCc
Q 030274          153 GGFDLILGADIYILYNR  169 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~~  169 (180)
                      ++||+|+++.++++...
T Consensus       106 ~~~D~v~~~~~l~~~~~  122 (218)
T 3ou2_A          106 RQWDAVFFAHWLAHVPD  122 (218)
T ss_dssp             SCEEEEEEESCGGGSCH
T ss_pred             CceeEEEEechhhcCCH
Confidence            78999999999888544

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.26  E-value=6.2e-12  Score=101.64  Aligned_cols=94  Identities=14%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh--cCCCCCCCCCcEEEEEe
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH--TSSENPNSDAGLAVAKL  136 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~  136 (180)
                      +..++.|......  ++.+|||+|||+|..++.+++.+.+|+++|.++.+++.+++|++.+  +.       .++.+...
T Consensus        80 ~e~vA~~~a~~l~--~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-------~~i~~i~~  150 (410)
T 3ll7_A           80 GAVTSSYKSRFIR--EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-------KDVNILTG  150 (410)
T ss_dssp             CHHHHHHGGGGSC--TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-------CEEEEEES
T ss_pred             HHHHHHHHHHhcC--CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-------CcEEEEEC
Confidence            3556666443321  3789999999999999999999999999999999999999999988  51       23555544


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +..+.  +...   ...+||+|+++|++..
T Consensus       151 Da~~~--L~~~---~~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          151 DFKEY--LPLI---KTFHPDYIYVDPARRS  175 (410)
T ss_dssp             CGGGS--HHHH---HHHCCSEEEECCEEC-
T ss_pred             cHHHh--hhhc---cCCCceEEEECCCCcC
Confidence            44332  1111   1247999999998765

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.26  E-value=2.5e-11  Score=91.06  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-h
Q 030274           74 QASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-K  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  150 (180)
                      ++.+|||+|||+|..++.+++  .+.+|+++|+++.+++.+++|++.++.      ..++.+...+....      .+ .
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~------~~~~  138 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF------ENQVRIIEGNALEQ------FENV  138 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC------TTTEEEEESCGGGC------HHHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECCHHHH------HHhh
Confidence            567999999999999999998  468999999999999999999998862      12455655444322      12 2


Q ss_pred             CCCCCcEEEEccc
Q 030274          151 YPGGFDLILGADI  163 (180)
Q Consensus       151 ~~~~fD~Ii~~d~  163 (180)
                      ..++||+|++...
T Consensus       139 ~~~~fD~V~~~~~  151 (232)
T 3ntv_A          139 NDKVYDMIFIDAA  151 (232)
T ss_dssp             TTSCEEEEEEETT
T ss_pred             ccCCccEEEEcCc
Confidence            3578999997653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.26  E-value=1.9e-11  Score=91.41  Aligned_cols=76  Identities=17%  Similarity=0.100  Sum_probs=58.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|.+++.+++.+  .+|+++|+++.+++.|++|++.|+..      .++.+..-++...     +   .
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~------~~i~~~~~d~l~~-----l---~   80 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK------EKIQVRLANGLAA-----F---E   80 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT------TTEEEEECSGGGG-----C---C
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------ceEEEEECchhhh-----c---c
Confidence            56799999999999999999975  58999999999999999999999832      2466655544321     1   1


Q ss_pred             CC-CCcEEEEccc
Q 030274          152 PG-GFDLILGADI  163 (180)
Q Consensus       152 ~~-~fD~Ii~~d~  163 (180)
                      .. +||+|+.+.+
T Consensus        81 ~~~~~D~IviaG~   93 (225)
T 3kr9_A           81 ETDQVSVITIAGM   93 (225)
T ss_dssp             GGGCCCEEEEEEE
T ss_pred             cCcCCCEEEEcCC
Confidence            12 6998886543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.26  E-value=2.7e-12  Score=98.11  Aligned_cols=84  Identities=12%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH-------HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNE-------EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~-------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ++.+|||+|||+|..++.+|+.+.+|+++|.++       .+++.+++|++.|+..      .++.+...+....  +..
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~------~ri~~~~~d~~~~--l~~  154 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA------ARINLHFGNAAEQ--MPA  154 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH------TTEEEEESCHHHH--HHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc------cCeEEEECCHHHH--HHh
Confidence            567999999999999999999989999999999       9999999999887621      1244443332211  111


Q ss_pred             HHhhCCCCCcEEEEcccccc
Q 030274          147 IIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      + +....+||+|+++|++.+
T Consensus       155 ~-~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          155 L-VKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             H-HHHHCCCSEEEECCCC--
T ss_pred             h-hccCCCccEEEECCCCCC
Confidence            1 110158999999987654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.25  E-value=2e-11  Score=92.27  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=57.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|++++.+++.+  .+|+++|+++.+++.|++|++.|+..      .++.+...+....     +   .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~------~~I~v~~gD~l~~-----~---~   86 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT------EQIDVRKGNGLAV-----I---E   86 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT------TTEEEEECSGGGG-----C---C
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------ceEEEEecchhhc-----c---C
Confidence            56799999999999999999976  48999999999999999999999832      3455555443322     1   1


Q ss_pred             CC-CCcEEEEcc
Q 030274          152 PG-GFDLILGAD  162 (180)
Q Consensus       152 ~~-~fD~Ii~~d  162 (180)
                      +. +||+|+.+-
T Consensus        87 ~~~~~D~Iviag   98 (244)
T 3gnl_A           87 KKDAIDTIVIAG   98 (244)
T ss_dssp             GGGCCCEEEEEE
T ss_pred             ccccccEEEEeC
Confidence            22 599987654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.25  E-value=6.6e-11  Score=88.62  Aligned_cols=78  Identities=17%  Similarity=0.095  Sum_probs=61.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++..++.        ++.+...+.....        ..+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--------~~~~~~~d~~~~~--------~~~  100 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--------KPRLACQDISNLN--------INR  100 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--------CCEEECCCGGGCC--------CSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--------CeEEEecccccCC--------ccC
Confidence            667999999999999999999999999999999999999999887641        2344433332211        236


Q ss_pred             CCcEEEEcc-ccccC
Q 030274          154 GFDLILGAD-IYILY  167 (180)
Q Consensus       154 ~fD~Ii~~d-~~y~~  167 (180)
                      +||+|+++. ++.+.
T Consensus       101 ~fD~v~~~~~~l~~~  115 (246)
T 1y8c_A          101 KFDLITCCLDSTNYI  115 (246)
T ss_dssp             CEEEEEECTTGGGGC
T ss_pred             CceEEEEcCcccccc
Confidence            899999997 88764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.25  E-value=4.3e-11  Score=90.53  Aligned_cols=93  Identities=12%  Similarity=0.170  Sum_probs=68.7

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.+.....++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.++++.  .          ++.+...+..... 
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~--~----------~~~~~~~d~~~~~-   91 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL--P----------NTNFGKADLATWK-   91 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS--T----------TSEEEECCTTTCC-
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--C----------CcEEEECChhhcC-
Confidence            333333446789999999999999999887  789999999999999999871  1          2445555554321 


Q ss_pred             hhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          144 INKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                             ..++||+|+++.++++ .+...++..+.+
T Consensus        92 -------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~  120 (259)
T 2p35_A           92 -------PAQKADLLYANAVFQWVPDHLAVLSQLMD  120 (259)
T ss_dssp             -------CSSCEEEEEEESCGGGSTTHHHHHHHHGG
T ss_pred             -------ccCCcCEEEEeCchhhCCCHHHHHHHHHH
Confidence                   2568999999999887 455555555544

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.25  E-value=3.8e-11  Score=87.43  Aligned_cols=81  Identities=10%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   ..+|+++|+++.+++.+++|++.++.      ..++.+...+...   +.   ..
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~---~~---~~   89 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL------IDRVTLIKDGHQN---MD---KY   89 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC------GGGEEEECSCGGG---GG---GT
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCCeEEEECCHHH---Hh---hh
Confidence            5779999999999999998876   25999999999999999999998752      1235554444322   21   12


Q ss_pred             CCCCCcEEEEcccccc
Q 030274          151 YPGGFDLILGADIYIL  166 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~  166 (180)
                      ..++||+|+++.+++.
T Consensus        90 ~~~~fD~v~~~~~~~~  105 (197)
T 3eey_A           90 IDCPVKAVMFNLGYLP  105 (197)
T ss_dssp             CCSCEEEEEEEESBCT
T ss_pred             ccCCceEEEEcCCccc
Confidence            3578999999987743

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.25  E-value=2.3e-11  Score=91.15  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=58.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|++++.+++.+  .+|+++|+++.+++.|++|++.|+.      ..++.+...+.....        .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl------~~~I~~~~gD~l~~~--------~   86 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL------TSKIDVRLANGLSAF--------E   86 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC------TTTEEEEECSGGGGC--------C
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECchhhcc--------c
Confidence            56799999999999999999976  4899999999999999999999973      234666655443321        1


Q ss_pred             C-CCCcEEEEccc
Q 030274          152 P-GGFDLILGADI  163 (180)
Q Consensus       152 ~-~~fD~Ii~~d~  163 (180)
                      + .+||+|+.+-+
T Consensus        87 ~~~~~D~IviaGm   99 (230)
T 3lec_A           87 EADNIDTITICGM   99 (230)
T ss_dssp             GGGCCCEEEEEEE
T ss_pred             cccccCEEEEeCC
Confidence            2 26999875544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.25  E-value=2.6e-11  Score=90.48  Aligned_cols=94  Identities=14%  Similarity=0.155  Sum_probs=68.1

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      |..... ...+.+.....++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++..++         ++.+..
T Consensus        53 ~~~~~~-~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~v~~~~  122 (231)
T 1vbf_A           53 TTALNL-GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---------NIKLIL  122 (231)
T ss_dssp             ECCHHH-HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---------SEEEEE
T ss_pred             cCCHHH-HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---------CeEEEE
Confidence            434333 3333333334467899999999999999999988999999999999999999987653         355555


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .+....  .     ...++||+|+++.++++
T Consensus       123 ~d~~~~--~-----~~~~~fD~v~~~~~~~~  146 (231)
T 1vbf_A          123 GDGTLG--Y-----EEEKPYDRVVVWATAPT  146 (231)
T ss_dssp             SCGGGC--C-----GGGCCEEEEEESSBBSS
T ss_pred             CCcccc--c-----ccCCCccEEEECCcHHH
Confidence            544331  1     02358999999998865

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.24  E-value=4.1e-11  Score=92.75  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=67.5

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +++.+.+.....++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++.      ..++.+...+....
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV------ASKLQVLVGDVLKT   89 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT------GGGEEEEESCTTTS
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEEcceecc
Confidence            444444444445678999999999999999999889999999999999999999865431      12466666655543


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +         ...||+|+++.|++.
T Consensus        90 ~---------~~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           90 D---------LPFFDTCVANLPYQI  105 (285)
T ss_dssp             C---------CCCCSEEEEECCGGG
T ss_pred             c---------chhhcEEEEecCccc
Confidence            2         237999999887765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.24  E-value=4.3e-11  Score=103.03  Aligned_cols=82  Identities=13%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++++|||+|||+|.+++.+++.|+ +|+++|+|+.+++.+++|++.|+..     ..++.+...+.     .. .++...
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~-----~~~v~~i~~D~-----~~-~l~~~~  607 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT-----GRAHRLIQADC-----LA-WLREAN  607 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----STTEEEEESCH-----HH-HHHHCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ccceEEEecCH-----HH-HHHhcC
Confidence            678999999999999999998775 6999999999999999999999732     02344443332     22 123345


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      ++||+|++++|.|.
T Consensus       608 ~~fD~Ii~DPP~f~  621 (703)
T 3v97_A          608 EQFDLIFIDPPTFS  621 (703)
T ss_dssp             CCEEEEEECCCSBC
T ss_pred             CCccEEEECCcccc
Confidence            78999999999765

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.24  E-value=1.7e-11  Score=93.08  Aligned_cols=80  Identities=15%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|.+++.+++.  +.+|+++|.++.+++.+++|++.++.       .++.+...+..+   +.. ...
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l-------~~v~~~~~d~~~---~~~-~~~  147 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL-------KGARALWGRAEV---LAR-EAG  147 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-------SSEEEEECCHHH---HTT-STT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------CceEEEECcHHH---hhc-ccc
Confidence            36779999999999999999976  57999999999999999999999872       235554443321   110 001


Q ss_pred             CCCCCcEEEEccc
Q 030274          151 YPGGFDLILGADI  163 (180)
Q Consensus       151 ~~~~fD~Ii~~d~  163 (180)
                      ..++||+|++..+
T Consensus       148 ~~~~fD~I~s~a~  160 (249)
T 3g89_A          148 HREAYARAVARAV  160 (249)
T ss_dssp             TTTCEEEEEEESS
T ss_pred             cCCCceEEEECCc
Confidence            2368999999753

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=3.4e-11  Score=90.58  Aligned_cols=84  Identities=17%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++...          ++.+...+..+......+  ...
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~~~d~~~~~~~~~~--~~~  122 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAA----------NISYRLLDGLVPEQAAQI--HSE  122 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCT----------TEEEEECCTTCHHHHHHH--HHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCccc----------CceEEECccccccccccc--ccc
Confidence            46779999999999999999998889999999999999999886322          466666666653221111  011


Q ss_pred             CCCcEEEEccccccCC
Q 030274          153 GGFDLILGADIYILYN  168 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~  168 (180)
                      ..||+|+++.++++..
T Consensus       123 ~~~d~v~~~~~~~~~~  138 (245)
T 3ggd_A          123 IGDANIYMRTGFHHIP  138 (245)
T ss_dssp             HCSCEEEEESSSTTSC
T ss_pred             cCccEEEEcchhhcCC
Confidence            3599999999988854

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.24  E-value=1.9e-11  Score=98.38  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=72.8

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC----------------------------------------Ce
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC----------------------------------------RE   98 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~----------------------------------------~~   98 (180)
                      .+.|+..+.......++.+|||++||+|.+.+.+|..+                                        .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            36788887777666678899999999999999887653                                        46


Q ss_pred             EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274           99 VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus        99 V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      |+++|+++.+++.|+.|+..++..      ..+.+...++.+..        .+.+||+|+++||+..
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~------~~i~~~~~D~~~l~--------~~~~~D~Iv~NPPyg~  313 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVD------EYIEFNVGDATQFK--------SEDEFGFIITNPPYGE  313 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCG------GGEEEEECCGGGCC--------CSCBSCEEEECCCCCC
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCC------CceEEEECChhhcC--------cCCCCcEEEECCCCcC
Confidence            999999999999999999998732      24555555544321        2458999999999754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.24  E-value=3.9e-11  Score=91.28  Aligned_cols=86  Identities=10%  Similarity=0.069  Sum_probs=65.0

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ..+.+.+.....  ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++.            ++.+...+..
T Consensus        38 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------------~~~~~~~d~~  103 (263)
T 3pfg_A           38 ADLAALVRRHSP--KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------------DAVLHHGDMR  103 (263)
T ss_dssp             HHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------------TSEEEECCTT
T ss_pred             HHHHHHHHhhCC--CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------------CCEEEECChH
Confidence            344455544332  56799999999999999999999999999999999999998743            2446665555


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcc-ccccC
Q 030274          140 NSDQINKIIQKYPGGFDLILGAD-IYILY  167 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d-~~y~~  167 (180)
                      ...        ..++||+|+++. ++.+.
T Consensus       104 ~~~--------~~~~fD~v~~~~~~l~~~  124 (263)
T 3pfg_A          104 DFS--------LGRRFSAVTCMFSSIGHL  124 (263)
T ss_dssp             TCC--------CSCCEEEEEECTTGGGGS
T ss_pred             HCC--------ccCCcCEEEEcCchhhhc
Confidence            432        256899999997 77663

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.24  E-value=2.6e-11  Score=90.53  Aligned_cols=97  Identities=9%  Similarity=0.092  Sum_probs=64.8

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      -|....+..++.......++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.++..     ..++.
T Consensus        38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-----~~~i~  112 (221)
T 3dr5_A           38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS-----PSRVR  112 (221)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC-----GGGEE
T ss_pred             CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cCcEE
Confidence            3444445555544332223459999999999999999874   579999999999999999999987621     02344


Q ss_pred             EEEeecCCCchhhHHHhhC-CCCCcEEEEccc
Q 030274          133 VAKLEWGNSDQINKIIQKY-PGGFDLILGADI  163 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~-~~~fD~Ii~~d~  163 (180)
                      +..   ++.  .+. ++.. .++||+|++...
T Consensus       113 ~~~---gda--~~~-l~~~~~~~fD~V~~d~~  138 (221)
T 3dr5_A          113 FLL---SRP--LDV-MSRLANDSYQLVFGQVS  138 (221)
T ss_dssp             EEC---SCH--HHH-GGGSCTTCEEEEEECCC
T ss_pred             EEE---cCH--HHH-HHHhcCCCcCeEEEcCc
Confidence            432   222  211 2222 578999988653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.24  E-value=3e-11  Score=89.15  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=62.7

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...++.+|||+|||+|..+..+++.+   .+|+++|.++.+++.+++++..++.       .++.+...+....  .   
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~--~---  141 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-------DNVIVIVGDGTLG--Y---  141 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-------TTEEEEESCGGGC--C---
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCeEEEECCcccC--C---
Confidence            44577899999999999999998864   7999999999999999999988752       2355554443211  1   


Q ss_pred             HhhCCCCCcEEEEcccccc
Q 030274          148 IQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~  166 (180)
                        ...++||+|+++.++.+
T Consensus       142 --~~~~~fD~v~~~~~~~~  158 (215)
T 2yxe_A          142 --EPLAPYDRIYTTAAGPK  158 (215)
T ss_dssp             --GGGCCEEEEEESSBBSS
T ss_pred             --CCCCCeeEEEECCchHH
Confidence              01357999999998765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.24  E-value=2.9e-11  Score=89.79  Aligned_cols=82  Identities=24%  Similarity=0.206  Sum_probs=59.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|+..++..      .++.+...+....  +..+...
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------~~v~~~~~d~~~~--~~~~~~~  129 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN------DRVEVRTGLALDS--LQQIENE  129 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT------TTEEEEESCHHHH--HHHHHHT
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEEcCHHHH--HHHHHhc
Confidence            5679999999999999999986   689999999999999999999987632      2355554433211  1111111


Q ss_pred             CCCCCcEEEEccc
Q 030274          151 YPGGFDLILGADI  163 (180)
Q Consensus       151 ~~~~fD~Ii~~d~  163 (180)
                      ..++||+|++..+
T Consensus       130 ~~~~fD~v~~d~~  142 (223)
T 3duw_A          130 KYEPFDFIFIDAD  142 (223)
T ss_dssp             TCCCCSEEEECSC
T ss_pred             CCCCcCEEEEcCC
Confidence            1257999998764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.23  E-value=1.8e-11  Score=89.84  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|+..++.       .++.+...++....        .
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~~--------~  129 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-------ENIEPVQSRVEEFP--------S  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-------SSEEEEECCTTTSC--------C
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCeEEEecchhhCC--------c
Confidence            4679999999999999999875  67999999999999999999998762       23666666665432        2


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      .++||+|+++.
T Consensus       130 ~~~~D~i~~~~  140 (207)
T 1jsx_A          130 EPPFDGVISRA  140 (207)
T ss_dssp             CSCEEEEECSC
T ss_pred             cCCcCEEEEec
Confidence            36899999865

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.23  E-value=9.5e-12  Score=88.53  Aligned_cols=84  Identities=17%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++++  ..          ++.+...+          .+...+
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--~~----------~v~~~~~d----------~~~~~~   74 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK--FD----------SVITLSDP----------KEIPDN   74 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH--CT----------TSEEESSG----------GGSCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh--CC----------CcEEEeCC----------CCCCCC
Confidence            567999999999999999998877999999999999999988  11          23344333          112356


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +||+|+++.++++ .+...+++.+.+.
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~  101 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRI  101 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHH
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHh
Confidence            8999999999887 4555556555543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.23  E-value=3.4e-11  Score=91.61  Aligned_cols=96  Identities=19%  Similarity=0.302  Sum_probs=66.8

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.+++.+...  ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++...+             +...+...
T Consensus        43 ~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~-------------~~~~d~~~  107 (260)
T 2avn_A           43 LIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKN-------------VVEAKAED  107 (260)
T ss_dssp             HHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSC-------------EEECCTTS
T ss_pred             HHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCC-------------EEECcHHH
Confidence            34445544332  6779999999999999999998999999999999999999874311             34444333


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc--CCchhhHHHHHH
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL--YNRSLLMTSFFQ  178 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~l~~~~~~  178 (180)
                      ..       ...++||+|++..++++  .+....+..+.+
T Consensus       108 ~~-------~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~  140 (260)
T 2avn_A          108 LP-------FPSGAFEAVLALGDVLSYVENKDKAFSEIRR  140 (260)
T ss_dssp             CC-------SCTTCEEEEEECSSHHHHCSCHHHHHHHHHH
T ss_pred             CC-------CCCCCEEEEEEcchhhhccccHHHHHHHHHH
Confidence            21       13468999999886544  444455554443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.23  E-value=4.6e-11  Score=96.11  Aligned_cols=94  Identities=10%  Similarity=0.049  Sum_probs=71.9

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC----------------------------------------Ce
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC----------------------------------------RE   98 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~----------------------------------------~~   98 (180)
                      .+.|+..+.......++..+||.+||+|.+.+.+|..+                                        .+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            36788777666555577899999999999999888653                                        34


Q ss_pred             EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274           99 VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus        99 V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      |+++|+++.+++.|++|++.++..      ..+.+...+..+..        ...+||+|++|||+..
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~------~~I~~~~~D~~~l~--------~~~~fD~Iv~NPPYG~  312 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLE------DVVKLKQMRLQDFK--------TNKINGVLISNPPYGE  312 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCT------TTEEEEECCGGGCC--------CCCCSCEEEECCCCTT
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCC------CceEEEECChHHCC--------ccCCcCEEEECCchhh
Confidence            999999999999999999998732      23555555444321        2358999999999865

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.23  E-value=5e-11  Score=89.55  Aligned_cols=86  Identities=19%  Similarity=0.190  Sum_probs=61.5

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++  .             .+...+.     .....+...
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--~-------------~~~~~d~-----~~~~~~~~~   99 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--F-------------NVVKSDA-----IEYLKSLPD   99 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--S-------------EEECSCH-----HHHHHTSCT
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--c-------------ceeeccH-----HHHhhhcCC
Confidence            3568999999999999999999898999999999999998876  1             1222211     111112245


Q ss_pred             CCCcEEEEccccccCCc---hhhHHHHHH
Q 030274          153 GGFDLILGADIYILYNR---SLLMTSFFQ  178 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~~~---~~l~~~~~~  178 (180)
                      ++||+|+++.++++-..   ..+++.+.+
T Consensus       100 ~~fD~i~~~~~l~~~~~~~~~~~l~~~~~  128 (240)
T 3dli_A          100 KYLDGVMISHFVEHLDPERLFELLSLCYS  128 (240)
T ss_dssp             TCBSEEEEESCGGGSCGGGHHHHHHHHHH
T ss_pred             CCeeEEEECCchhhCCcHHHHHHHHHHHH
Confidence            78999999999988433   344444443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=3.2e-11  Score=92.61  Aligned_cols=86  Identities=21%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++++.  .          ++.+...+.....        ..+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~--~----------~~~~~~~d~~~~~--------~~~  116 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY--P----------HLHFDVADARNFR--------VDK  116 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--T----------TSCEEECCTTTCC--------CSS
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC--C----------CCEEEECChhhCC--------cCC
Confidence            6679999999999999999998899999999999999998875  1          1335555544321        246


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +||+|+++.++++ .+....+..+.+.
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~  143 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQA  143 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHh
Confidence            8999999999877 5666666655543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.22  E-value=1.8e-10  Score=85.17  Aligned_cols=79  Identities=13%  Similarity=0.019  Sum_probs=61.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||||||+|.+++.+++.  +.+|+++|+++.+++.+++|+..++.       .++.+...++....   ..  ..
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~v~~~~~d~~~~~---~~--~~  108 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-------PNIKLLWVDGSDLT---DY--FE  108 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-------SSEEEEECCSSCGG---GT--SC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-------CCEEEEeCCHHHHH---hh--cC
Confidence            4679999999999999999886  47999999999999999999998862       34666666655421   10  13


Q ss_pred             CCCCcEEEEcccc
Q 030274          152 PGGFDLILGADIY  164 (180)
Q Consensus       152 ~~~fD~Ii~~d~~  164 (180)
                      .++||+|+++.+.
T Consensus       109 ~~~~D~i~~~~~~  121 (214)
T 1yzh_A          109 DGEIDRLYLNFSD  121 (214)
T ss_dssp             TTCCSEEEEESCC
T ss_pred             CCCCCEEEEECCC
Confidence            4689999999764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.22  E-value=2.7e-11  Score=91.26  Aligned_cols=79  Identities=14%  Similarity=0.202  Sum_probs=58.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|.+++.+++  .+.+|+++|.++.+++.+++|++.++.       .++.+...+..+   +.. ....
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~---~~~-~~~~  138 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-------ENTTFCHDRAET---FGQ-RKDV  138 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-------SSEEEEESCHHH---HTT-CTTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCEEEEeccHHH---hcc-cccc
Confidence            667999999999999999985  467999999999999999999998862       134454433221   100 0011


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      .++||+|++..+
T Consensus       139 ~~~fD~V~~~~~  150 (240)
T 1xdz_A          139 RESYDIVTARAV  150 (240)
T ss_dssp             TTCEEEEEEECC
T ss_pred             cCCccEEEEecc
Confidence            468999999773

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.22  E-value=8.2e-11  Score=88.73  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           72 VLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ..++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++..+         .++.+...++....       .
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------~~~~~~~~d~~~~~-------~  154 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---------PVGKFILASMETAT-------L  154 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---------SEEEEEESCGGGCC-------C
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---------CceEEEEccHHHCC-------C
Confidence            3467899999999999999888764 67999999999999999986543         13455554443321       1


Q ss_pred             CCCCCcEEEEccccccC
Q 030274          151 YPGGFDLILGADIYILY  167 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~  167 (180)
                      ..++||+|+++.++++.
T Consensus       155 ~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A          155 PPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CSSCEEEEEEESCGGGS
T ss_pred             CCCCeEEEEEcchhhhC
Confidence            34689999999998774

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.22  E-value=1.2e-11  Score=98.05  Aligned_cols=88  Identities=18%  Similarity=0.278  Sum_probs=64.6

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      .+..+.+.+..    ..+.+|||+|||+|.+++.+++.+  .+|+++|.++.+++.+++|+..++..        ..+..
T Consensus       184 ~~~~ll~~l~~----~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--------~~~~~  251 (343)
T 2pjd_A          184 GSQLLLSTLTP----HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--------GEVFA  251 (343)
T ss_dssp             HHHHHHHHSCT----TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--------CEEEE
T ss_pred             HHHHHHHhcCc----CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--------CEEEE
Confidence            45555555422    245689999999999999999875  59999999999999999999988621        22332


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .+...         ...++||+|++++++++
T Consensus       252 ~d~~~---------~~~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          252 SNVFS---------EVKGRFDMIISNPPFHD  273 (343)
T ss_dssp             CSTTT---------TCCSCEEEEEECCCCCS
T ss_pred             ccccc---------cccCCeeEEEECCCccc
Confidence            22221         12568999999998764

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.21  E-value=2.6e-11  Score=97.88  Aligned_cols=93  Identities=12%  Similarity=0.092  Sum_probs=71.0

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC----------------------------------------CeE
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC----------------------------------------REV   99 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~----------------------------------------~~V   99 (180)
                      +.|+..+.......++..|||.+||+|.+.+.+|..+                                        .+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            6677777665555577899999999999999888653                                        349


Q ss_pred             EEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          100 LLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       100 ~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +++|+++.+++.|+.|++.++..      .++.+...++.+..        ...+||+|++|||+..
T Consensus       267 ~GvDid~~al~~Ar~Na~~~gl~------~~I~~~~~D~~~~~--------~~~~fD~Iv~NPPYg~  319 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAGLG------DLITFRQLQVADFQ--------TEDEYGVVVANPPYGE  319 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCT------TCSEEEECCGGGCC--------CCCCSCEEEECCCCCC
T ss_pred             EEEECCHHHHHHHHHHHHHcCCC------CceEEEECChHhCC--------CCCCCCEEEECCCCcc
Confidence            99999999999999999998732      23555555544321        2358999999999754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.21  E-value=1.3e-10  Score=87.00  Aligned_cols=86  Identities=17%  Similarity=0.200  Sum_probs=63.6

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+++.+...  ++.+|||+|||+|..+..+++. .+|+++|+++.+++.+++++..++        .++.+...+....
T Consensus        23 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--------~~~~~~~~d~~~~   91 (243)
T 3d2l_A           23 WVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--------RHVDFWVQDMREL   91 (243)
T ss_dssp             HHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--------CCCEEEECCGGGC
T ss_pred             HHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--------CceEEEEcChhhc
Confidence            4444444332  4579999999999999999988 899999999999999999988764        2344555444322


Q ss_pred             chhhHHHhhCCCCCcEEEEcc-cccc
Q 030274          142 DQINKIIQKYPGGFDLILGAD-IYIL  166 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d-~~y~  166 (180)
                      .        ..++||+|+++. ++.+
T Consensus        92 ~--------~~~~fD~v~~~~~~~~~  109 (243)
T 3d2l_A           92 E--------LPEPVDAITILCDSLNY  109 (243)
T ss_dssp             C--------CSSCEEEEEECTTGGGG
T ss_pred             C--------CCCCcCEEEEeCCchhh
Confidence            1        236899999975 7665

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.21  E-value=1.9e-11  Score=90.44  Aligned_cols=90  Identities=14%  Similarity=0.104  Sum_probs=64.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++   ..          +.+...++.+..   ........
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~----------~~~~~~~~~~~~---~~~~~~~~  115 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---GA----------GEVHLASYAQLA---EAKVPVGK  115 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---CS----------SCEEECCHHHHH---TTCSCCCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---cc----------cccchhhHHhhc---ccccccCC
Confidence            457999999999999999999999999999999999999987   21          223333322210   00001234


Q ss_pred             CCcEEEEccccccCCchhhHHHHHHh
Q 030274          154 GFDLILGADIYILYNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~~~l~~~~~~a  179 (180)
                      +||+|+++.+++..+...+++.+.+.
T Consensus       116 ~fD~v~~~~~l~~~~~~~~l~~~~~~  141 (227)
T 3e8s_A          116 DYDLICANFALLHQDIIELLSAMRTL  141 (227)
T ss_dssp             CEEEEEEESCCCSSCCHHHHHHHHHT
T ss_pred             CccEEEECchhhhhhHHHHHHHHHHH
Confidence            69999999998866666666666543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.21  E-value=7.1e-11  Score=88.09  Aligned_cols=70  Identities=20%  Similarity=0.187  Sum_probs=56.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC-C
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY-P  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++|   .         .++.+...++....      +.. .
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~---------~~~~~~~~d~~~~~------~~~~~  109 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---A---------PHADVYEWNGKGEL------PAGLG  109 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---C---------TTSEEEECCSCSSC------CTTCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---C---------CCceEEEcchhhcc------CCcCC
Confidence            678999999999999999999999999999999999999988   1         13556776664321      112 5


Q ss_pred             CCCcEEEEc
Q 030274          153 GGFDLILGA  161 (180)
Q Consensus       153 ~~fD~Ii~~  161 (180)
                      ++||+|+++
T Consensus       110 ~~fD~v~~~  118 (226)
T 3m33_A          110 APFGLIVSR  118 (226)
T ss_dssp             CCEEEEEEE
T ss_pred             CCEEEEEeC
Confidence            689999998

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.21  E-value=9.5e-11  Score=90.87  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||||||+|..+..+++.+.+|+++|+++.+++.+++++..++..    ...++.+...++....        ..+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~~~v~~~~~d~~~~~--------~~~  149 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPAD----VRDRCTLVQGDMSAFA--------LDK  149 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHH----HHTTEEEEECBTTBCC--------CSC
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccc----cccceEEEeCchhcCC--------cCC
Confidence            3449999999999999999999999999999999999999998865310    0024667776666432        257


Q ss_pred             CCcEEEEccc-cccCC
Q 030274          154 GFDLILGADI-YILYN  168 (180)
Q Consensus       154 ~fD~Ii~~d~-~y~~~  168 (180)
                      +||+|+++.. +++..
T Consensus       150 ~fD~v~~~~~~~~~~~  165 (299)
T 3g2m_A          150 RFGTVVISSGSINELD  165 (299)
T ss_dssp             CEEEEEECHHHHTTSC
T ss_pred             CcCEEEECCcccccCC
Confidence            8999997644 44433

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.21  E-value=2e-10  Score=86.31  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=64.2

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+...+...   ....+|||||||+|.+++.+. .+.+|+++|+++.+++.+++++..++        .+..+...+...
T Consensus        95 ~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g--------~~~~~~v~D~~~  162 (253)
T 3frh_A           95 TLYDFIFSA---ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD--------WDFTFALQDVLC  162 (253)
T ss_dssp             HHHHHHTSS---CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT--------CEEEEEECCTTT
T ss_pred             HHHHHHhcC---CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC--------CCceEEEeeccc
Confidence            344444444   356799999999999999888 66799999999999999999999986        223344444333


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..        .+++||+|++..++.+
T Consensus       163 ~~--------~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          163 AP--------PAEAGDLALIFKLLPL  180 (253)
T ss_dssp             SC--------CCCBCSEEEEESCHHH
T ss_pred             CC--------CCCCcchHHHHHHHHH
Confidence            21        4669999999976655

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.20  E-value=5.2e-11  Score=93.39  Aligned_cols=91  Identities=15%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC---eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR---EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~---~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      +...+.+.....++.+|||+|||+|..++.+++.+.   +|+++|.++.+++.+++|+..++.       .++.+...+.
T Consensus        63 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-------~~v~~~~~d~  135 (317)
T 1dl5_A           63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-------ENVIFVCGDG  135 (317)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-------CSEEEEESCG
T ss_pred             HHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CCeEEEECCh
Confidence            333444333444778999999999999999998654   599999999999999999998762       2355555544


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .+..       ...++||+|+++.++.+
T Consensus       136 ~~~~-------~~~~~fD~Iv~~~~~~~  156 (317)
T 1dl5_A          136 YYGV-------PEFSPYDVIFVTVGVDE  156 (317)
T ss_dssp             GGCC-------GGGCCEEEEEECSBBSC
T ss_pred             hhcc-------ccCCCeEEEEEcCCHHH
Confidence            3321       01358999999998765

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.20  E-value=1.1e-10  Score=88.40  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=63.5

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ++.......++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.++..      .++.+...++.+.
T Consensus        84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------~~v~~~~~d~~~~  157 (255)
T 3mb5_A           84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD------DRVTIKLKDIYEG  157 (255)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT------TTEEEECSCGGGC
T ss_pred             HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC------CceEEEECchhhc
Confidence            3333334457889999999999999999987   689999999999999999999988622      2355555444421


Q ss_pred             chhhHHHhhCCCCCcEEEEccc
Q 030274          142 DQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                              ....+||+|+++.+
T Consensus       158 --------~~~~~~D~v~~~~~  171 (255)
T 3mb5_A          158 --------IEEENVDHVILDLP  171 (255)
T ss_dssp             --------CCCCSEEEEEECSS
T ss_pred             --------cCCCCcCEEEECCC
Confidence                    13457999999654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.20  E-value=2.4e-11  Score=92.19  Aligned_cols=90  Identities=16%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCC-------------CCC---------CC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSEN-------------PNS---------DA  129 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~-------------~~~---------~~  129 (180)
                      .++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++++..++....             ...         ..
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            4678999999999999999998886 999999999999999988765420000             000         00


Q ss_pred             cE-EEEEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          130 GL-AVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       130 ~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      ++ .+...+........   ....++||+|+++.+++
T Consensus       135 ~v~~~~~~d~~~~~~~~---~~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLG---GVSLPPADCLLSTLCLD  168 (265)
T ss_dssp             HEEEEEECCTTSSSTTT---TCCCCCEEEEEEESCHH
T ss_pred             hheeEEEeeeccCCCCC---ccccCCccEEEEhhhhh
Confidence            14 56666555432110   01226899999999987

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.20  E-value=1e-10  Score=87.88  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=74.7

Q ss_pred             cCceecchHH-HHHHHHhh---CCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCC
Q 030274           51 TGQLVWPGAM-LMNDYLSK---NPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSE  123 (180)
Q Consensus        51 ~g~~~w~~~~-~l~~~l~~---~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~  123 (180)
                      ..++.|+.-. .|+..+.+   ...+.+|.+|||+|||+|..+..+|+. |  .+|+++|+++.+++.++++++..+   
T Consensus        50 ~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---  126 (233)
T 4df3_A           50 EEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---  126 (233)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---
T ss_pred             ceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---
Confidence            3567887654 56666654   334568899999999999999999985 3  689999999999999998876542   


Q ss_pred             CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHH
Q 030274          124 NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTS  175 (180)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~  175 (180)
                            ++.....+-...+.    .+.....+|+|++ ++.++.+....+..
T Consensus       127 ------ni~~V~~d~~~p~~----~~~~~~~vDvVf~-d~~~~~~~~~~l~~  167 (233)
T 4df3_A          127 ------NIFPILGDARFPEK----YRHLVEGVDGLYA-DVAQPEQAAIVVRN  167 (233)
T ss_dssp             ------TEEEEESCTTCGGG----GTTTCCCEEEEEE-CCCCTTHHHHHHHH
T ss_pred             ------CeeEEEEeccCccc----cccccceEEEEEE-eccCChhHHHHHHH
Confidence                  35455444444322    1224568998875 44444333333433

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.20  E-value=6.4e-11  Score=88.22  Aligned_cols=80  Identities=13%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh--
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ--  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (180)
                      .+.+|||||||+|..++.+|+.  +.+|+++|+++.+++.+++|++.++.       .++.+..   ++.  .. +++  
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-------~nv~~~~---~Da--~~-~l~~~  100 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-------SNLRVMC---HDA--VE-VLHKM  100 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-------SSEEEEC---SCH--HH-HHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-------CcEEEEE---CCH--HH-HHHHH
Confidence            4569999999999999999976  46899999999999999999998862       2333332   222  11 111  


Q ss_pred             hCCCCCcEEEEc--ccccc
Q 030274          150 KYPGGFDLILGA--DIYIL  166 (180)
Q Consensus       150 ~~~~~fD~Ii~~--d~~y~  166 (180)
                      ...++||.|+++  ++...
T Consensus       101 ~~~~~~d~v~~~~~~p~~~  119 (218)
T 3dxy_A          101 IPDNSLRMVQLFFPDPWHK  119 (218)
T ss_dssp             SCTTCEEEEEEESCCCCCS
T ss_pred             cCCCChheEEEeCCCCccc
Confidence            246799999998  55433

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.20  E-value=9.3e-11  Score=94.24  Aligned_cols=106  Identities=20%  Similarity=0.260  Sum_probs=72.1

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCC-CCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSE-NPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|++.+.... ......++.+...++.+...... .
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-~  160 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-E  160 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS-C
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc-C
Confidence            46789999999999999988874   4699999999999999999987651000 00011346677666654311000 0


Q ss_pred             hhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          149 QKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +...++||+|+++.++++ .+...+++.+.+.
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~  192 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRV  192 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHH
Confidence            113568999999999887 5555555555443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.20  E-value=2.2e-11  Score=90.60  Aligned_cols=79  Identities=15%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||||||+|..++.+++.   +.+|+++|.++.+++.+++|++.++.      ..++.+...+..+      .++.
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~------~l~~  125 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL------QDKVTILNGASQD------LIPQ  125 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC------GGGEEEEESCHHH------HGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC------CCceEEEECCHHH------HHHH
Confidence            5679999999999999999884   67999999999999999999998862      1235555443321      1111


Q ss_pred             CC-----CCCcEEEEcccc
Q 030274          151 YP-----GGFDLILGADIY  164 (180)
Q Consensus       151 ~~-----~~fD~Ii~~d~~  164 (180)
                      ..     ++||+|++....
T Consensus       126 ~~~~~~~~~fD~V~~d~~~  144 (221)
T 3u81_A          126 LKKKYDVDTLDMVFLDHWK  144 (221)
T ss_dssp             TTTTSCCCCCSEEEECSCG
T ss_pred             HHHhcCCCceEEEEEcCCc
Confidence            22     689999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.20  E-value=6.7e-11  Score=86.83  Aligned_cols=89  Identities=17%  Similarity=0.095  Sum_probs=66.5

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ..+.+++.+..  .++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++...         .++.+...+.
T Consensus        30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------~~i~~~~~d~   98 (215)
T 2pxx_A           30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---------PQLRWETMDV   98 (215)
T ss_dssp             HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---------TTCEEEECCT
T ss_pred             HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---------CCcEEEEcch
Confidence            34666666554  3677999999999999999998875 8999999999999999986531         2355665555


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ....       ...++||+|+++.++..
T Consensus        99 ~~~~-------~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           99 RKLD-------FPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             TSCC-------SCSSCEEEEEEESHHHH
T ss_pred             hcCC-------CCCCcccEEEECcchhh
Confidence            4321       13468999999988643

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.19  E-value=4.7e-10  Score=96.95  Aligned_cols=89  Identities=12%  Similarity=0.052  Sum_probs=66.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||||||+|..++.+++.+   .+|+++|+++.+++.|++++....... .....++.+...+.....       .
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAk-r~gl~nVefiqGDa~dLp-------~  792 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE-ACNVKSATLYDGSILEFD-------S  792 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTT-CSSCSEEEEEESCTTSCC-------T
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchh-hcCCCceEEEECchHhCC-------c
Confidence            67899999999999999999987   799999999999999999876542100 011235666655554432       1


Q ss_pred             CCCCCcEEEEccccccCCch
Q 030274          151 YPGGFDLILGADIYILYNRS  170 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~  170 (180)
                      ..++||+|++..++.+-...
T Consensus       793 ~d~sFDlVV~~eVLeHL~dp  812 (950)
T 3htx_A          793 RLHDVDIGTCLEVIEHMEED  812 (950)
T ss_dssp             TSCSCCEEEEESCGGGSCHH
T ss_pred             ccCCeeEEEEeCchhhCChH
Confidence            35689999999999885433

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.19  E-value=2.5e-10  Score=85.79  Aligned_cols=79  Identities=19%  Similarity=0.256  Sum_probs=60.6

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++.+|||+|||+|..++.+++.+.+|+++|.++.+++.+++|+..++.      ..++.+...++....       ..
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~-------~~  155 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNL------GKNVKFFNVDFKDAE-------VP  155 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTC------CTTEEEECSCTTTSC-------CC
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC------CCcEEEEEcChhhcc-------cC
Confidence            34678999999999999999988888999999999999999999988752      124555544444321       02


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      ..+||+|+++.+
T Consensus       156 ~~~~D~v~~~~~  167 (248)
T 2yvl_A          156 EGIFHAAFVDVR  167 (248)
T ss_dssp             TTCBSEEEECSS
T ss_pred             CCcccEEEECCc
Confidence            357999998654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.19  E-value=5.5e-11  Score=89.19  Aligned_cols=91  Identities=19%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      +...+.+.....++.+|||+|||+|..++.+++.+ .+|+++|.++.+++.+++|+..++.       .++.+...+...
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~  151 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-------KNVHVILGDGSK  151 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-------CSEEEEESCGGG
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEECCccc
Confidence            33333333334467799999999999999999876 8999999999999999999988762       235555444311


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .  +.     ...+||+|+++.++.+
T Consensus       152 ~--~~-----~~~~fD~Ii~~~~~~~  170 (235)
T 1jg1_A          152 G--FP-----PKAPYDVIIVTAGAPK  170 (235)
T ss_dssp             C--CG-----GGCCEEEEEECSBBSS
T ss_pred             C--CC-----CCCCccEEEECCcHHH
Confidence            1  10     1236999999987654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.18  E-value=4.2e-11  Score=92.01  Aligned_cols=86  Identities=10%  Similarity=0.077  Sum_probs=63.5

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.+.+.....++ +|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...          ++.+...|....+-
T Consensus        37 ~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~----------~v~vi~~D~l~~~~  105 (271)
T 3fut_A           37 RRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGL----------PVRLVFQDALLYPW  105 (271)
T ss_dssp             HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTS----------SEEEEESCGGGSCG
T ss_pred             HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCC----------CEEEEECChhhCCh
Confidence            333333333467 9999999999999999999999999999999999999987532          35566655544321


Q ss_pred             hhHHHhhCCCCCcEEEEcccccc
Q 030274          144 INKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                           + ....+|.|++|.|++.
T Consensus       106 -----~-~~~~~~~iv~NlPy~i  122 (271)
T 3fut_A          106 -----E-EVPQGSLLVANLPYHI  122 (271)
T ss_dssp             -----G-GSCTTEEEEEEECSSC
T ss_pred             -----h-hccCccEEEecCcccc
Confidence                 1 1126899999998876

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.18  E-value=1.7e-10  Score=88.66  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=65.3

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCC
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ++.......++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.+ +.       .++.+...++..
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-------~~v~~~~~d~~~  173 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-------GNVRTSRSDIAD  173 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-------TTEEEECSCTTT
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-------CcEEEEECchhc
Confidence            3334444457789999999999999999886   689999999999999999999887 51       245555555443


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      .        ...++||+|++..+    +...+++.+.+
T Consensus       174 ~--------~~~~~fD~Vi~~~~----~~~~~l~~~~~  199 (275)
T 1yb2_A          174 F--------ISDQMYDAVIADIP----DPWNHVQKIAS  199 (275)
T ss_dssp             C--------CCSCCEEEEEECCS----CGGGSHHHHHH
T ss_pred             c--------CcCCCccEEEEcCc----CHHHHHHHHHH
Confidence            1        12457999998443    33344444443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.17  E-value=3.9e-10  Score=87.42  Aligned_cols=92  Identities=18%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             CCCCCCCeEEEeCCcCC-hHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           70 PDVLQASSILELGSGVG-VTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G-~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ....++.+|||+|||+| +.++.+|+ .+++|+++|+++++++.|+++++..+.       .++.+...+..   .+   
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-------~~v~~v~gDa~---~l---  184 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-------DGVNVITGDET---VI---  184 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-------CSEEEEESCGG---GG---
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-------CCeEEEECchh---hC---
Confidence            34557889999999997 45567777 488999999999999999999998762       24544443322   21   


Q ss_pred             HhhCCCCCcEEEEccccccCCchhhHHHHHHh
Q 030274          148 IQKYPGGFDLILGADIYILYNRSLLMTSFFQA  179 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~a  179 (180)
                         ...+||+|+.+-..  .+....++.+.+.
T Consensus       185 ---~d~~FDvV~~~a~~--~d~~~~l~el~r~  211 (298)
T 3fpf_A          185 ---DGLEFDVLMVAALA--EPKRRVFRNIHRY  211 (298)
T ss_dssp             ---GGCCCSEEEECTTC--SCHHHHHHHHHHH
T ss_pred             ---CCCCcCEEEECCCc--cCHHHHHHHHHHH
Confidence               14689999986542  3444555555443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.17  E-value=1.3e-10  Score=83.74  Aligned_cols=75  Identities=23%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++..            +.+...+.....       ...+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~------------~~~~~~d~~~~~-------~~~~  106 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPE------------ARWVVGDLSVDQ-------ISET  106 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT------------SEEEECCTTTSC-------CCCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCC------------CcEEEcccccCC-------CCCC
Confidence            677999999999999999999889999999999999999987521            345555554421       1246


Q ss_pred             CCcEEEEc-cccccC
Q 030274          154 GFDLILGA-DIYILY  167 (180)
Q Consensus       154 ~fD~Ii~~-d~~y~~  167 (180)
                      +||+|+++ +++++.
T Consensus       107 ~~D~i~~~~~~~~~~  121 (195)
T 3cgg_A          107 DFDLIVSAGNVMGFL  121 (195)
T ss_dssp             CEEEEEECCCCGGGS
T ss_pred             ceeEEEECCcHHhhc
Confidence            89999999 556553

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.17  E-value=8e-11  Score=88.08  Aligned_cols=81  Identities=14%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|+..++..      .++.+...+....  +...  ..
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------~~v~~~~~d~~~~--~~~~--~~  123 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE------SRIELLFGDALQL--GEKL--EL  123 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT------TTEEEECSCGGGS--HHHH--TT
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEECCHHHH--HHhc--cc
Confidence            5679999999999999999886  589999999999999999999987621      2354544333321  1110  01


Q ss_pred             CCCCcEEEEcccc
Q 030274          152 PGGFDLILGADIY  164 (180)
Q Consensus       152 ~~~fD~Ii~~d~~  164 (180)
                      .++||+|+++.+.
T Consensus       124 ~~~fD~I~~~~~~  136 (233)
T 2gpy_A          124 YPLFDVLFIDAAK  136 (233)
T ss_dssp             SCCEEEEEEEGGG
T ss_pred             CCCccEEEECCCH
Confidence            4689999998764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.17  E-value=1.7e-10  Score=84.74  Aligned_cols=91  Identities=13%  Similarity=0.025  Sum_probs=64.3

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +.+.+...  ++.+|||+|||+|..+..+   +. +|+++|.++.+++.++++.  .          ++.+...+.....
T Consensus        28 ~~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~----------~~~~~~~d~~~~~   90 (211)
T 2gs9_A           28 RALKGLLP--PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P----------EATWVRAWGEALP   90 (211)
T ss_dssp             HHHHTTCC--CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T----------TSEEECCCTTSCC
T ss_pred             HHHHHhcC--CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C----------CcEEEEcccccCC
Confidence            34444433  6789999999999988877   66 9999999999999999886  2          1334444443321


Q ss_pred             hhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          143 QINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                             ...++||+|+++.++++ .+....+..+.+
T Consensus        91 -------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~  120 (211)
T 2gs9_A           91 -------FPGESFDVVLLFTTLEFVEDVERVLLEARR  120 (211)
T ss_dssp             -------SCSSCEEEEEEESCTTTCSCHHHHHHHHHH
T ss_pred             -------CCCCcEEEEEEcChhhhcCCHHHHHHHHHH
Confidence                   13468999999999877 455555555544

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.17  E-value=2.2e-10  Score=88.25  Aligned_cols=81  Identities=16%  Similarity=0.106  Sum_probs=62.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++...+.      ..++.+...+.....-      ...
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~------~~~  131 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR------RFKVFFRAQDSYGRHM------DLG  131 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC------SSEEEEEESCTTTSCC------CCS
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC------CccEEEEECCcccccc------CCC
Confidence            677999999999999988888765 999999999999999999887642      1245566655554310      024


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      ++||+|+++.++++
T Consensus       132 ~~fD~v~~~~~l~~  145 (298)
T 1ri5_A          132 KEFDVISSQFSFHY  145 (298)
T ss_dssp             SCEEEEEEESCGGG
T ss_pred             CCcCEEEECchhhh
Confidence            68999999998765

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.17  E-value=7.3e-11  Score=89.43  Aligned_cols=77  Identities=19%  Similarity=0.218  Sum_probs=58.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|++.++..      .++.+...+..+      .++.
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~------~~v~~~~~d~~~------~l~~  130 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD------QRVTLREGPALQ------SLES  130 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT------TTEEEEESCHHH------HHHT
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEEcCHHH------HHHh
Confidence            5679999999999999999986   679999999999999999999988632      245555433321      1122


Q ss_pred             C--CCCCcEEEEcc
Q 030274          151 Y--PGGFDLILGAD  162 (180)
Q Consensus       151 ~--~~~fD~Ii~~d  162 (180)
                      .  .++||+|++..
T Consensus       131 ~~~~~~fD~V~~d~  144 (248)
T 3tfw_A          131 LGECPAFDLIFIDA  144 (248)
T ss_dssp             CCSCCCCSEEEECS
T ss_pred             cCCCCCeEEEEECC
Confidence            2  34899999754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.17  E-value=1.9e-10  Score=85.69  Aligned_cols=91  Identities=16%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             HHHHHHH---hhCCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           60 MLMNDYL---SKNPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        60 ~~l~~~l---~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      ..++..+   .+.....++.+|||+|||+|..++.+++. +  .+|+++|.++.+++.+++|++.+         .++.+
T Consensus        56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---------~~v~~  126 (227)
T 1g8a_A           56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---------RNIVP  126 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---------TTEEE
T ss_pred             hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---------CCCEE
Confidence            3444555   23333446789999999999999999875 3  79999999999999999988664         13556


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      ...+.......    .....+||+|+++.+
T Consensus       127 ~~~d~~~~~~~----~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A          127 ILGDATKPEEY----RALVPKVDVIFEDVA  152 (227)
T ss_dssp             EECCTTCGGGG----TTTCCCEEEEEECCC
T ss_pred             EEccCCCcchh----hcccCCceEEEECCC
Confidence            66555442111    112458999998765

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.17  E-value=1.3e-10  Score=87.93  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      +|+ .+-....+.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++|+...         .+
T Consensus         8 ~gQ-~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---------~~   77 (244)
T 1qam_A            8 HSQ-NFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---------DN   77 (244)
T ss_dssp             --C-CBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---------CS
T ss_pred             CCc-cccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---------CC
Confidence            344 33344556666666655557789999999999999999998899999999999999999987532         13


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +.+...+....+-      .....| .|+++.|++.
T Consensus        78 v~~~~~D~~~~~~------~~~~~~-~vv~nlPy~~  106 (244)
T 1qam_A           78 FQVLNKDILQFKF------PKNQSY-KIFGNIPYNI  106 (244)
T ss_dssp             EEEECCCGGGCCC------CSSCCC-EEEEECCGGG
T ss_pred             eEEEEChHHhCCc------ccCCCe-EEEEeCCccc
Confidence            5555444332210      001234 6888887764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.16  E-value=3.6e-11  Score=90.21  Aligned_cols=74  Identities=22%  Similarity=0.261  Sum_probs=55.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|..+..+++.+ .+|+++|.++.+++.+++++..++        .++.+...++.+.     ..+...
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~v~~~~~d~~~~-----~~~~~~  126 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------HKVIPLKGLWEDV-----APTLPD  126 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--------SEEEEEESCHHHH-----GGGSCT
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--------CCeEEEecCHHHh-----hcccCC
Confidence            56799999999999999998865 499999999999999999877653        2344444333221     012235


Q ss_pred             CCCcEEEE
Q 030274          153 GGFDLILG  160 (180)
Q Consensus       153 ~~fD~Ii~  160 (180)
                      ++||+|++
T Consensus       127 ~~fD~V~~  134 (236)
T 1zx0_A          127 GHFDGILY  134 (236)
T ss_dssp             TCEEEEEE
T ss_pred             CceEEEEE
Confidence            78999999

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.16  E-value=3.6e-11  Score=89.31  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|++.++..      .++.+...+....  +..+ ..
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------~~v~~~~~d~~~~--~~~~-~~  134 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS------DKIGLRLSPAKDT--LAEL-IH  134 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT------TTEEEEESCHHHH--HHHH-HT
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------CceEEEeCCHHHH--HHHh-hh
Confidence            5679999999999999999986   689999999999999999999988632      2355554333211  1111 11


Q ss_pred             C--CCCCcEEEEccc
Q 030274          151 Y--PGGFDLILGADI  163 (180)
Q Consensus       151 ~--~~~fD~Ii~~d~  163 (180)
                      .  .++||+|++...
T Consensus       135 ~~~~~~fD~v~~~~~  149 (225)
T 3tr6_A          135 AGQAWQYDLIYIDAD  149 (225)
T ss_dssp             TTCTTCEEEEEECSC
T ss_pred             ccCCCCccEEEECCC
Confidence            1  168999997654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.16  E-value=2e-10  Score=87.11  Aligned_cols=102  Identities=7%  Similarity=0.026  Sum_probs=71.4

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ..+...+....  ....+|||||||+|.+++.++..  ..+|+++|+++.+++.+++|+..++.        +..+...+
T Consensus       120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--------~~~~~v~D  189 (281)
T 3lcv_B          120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--------PHRTNVAD  189 (281)
T ss_dssp             HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--------CEEEEECC
T ss_pred             HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--------CceEEEee
Confidence            33444444433  24569999999999999988775  47999999999999999999999972        23344443


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHHhC
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQAI  180 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~al  180 (180)
                      ....        ..+++||+++++.++.+-   .....+ .++++|
T Consensus       190 ~~~~--------~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL  226 (281)
T 3lcv_B          190 LLED--------RLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIV  226 (281)
T ss_dssp             TTTS--------CCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHS
T ss_pred             eccc--------CCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHh
Confidence            3332        246799999999987662   222344 555543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.15  E-value=1.2e-10  Score=94.44  Aligned_cols=104  Identities=10%  Similarity=0.040  Sum_probs=72.2

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ..+++.+.+.....++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++++    +          +......+.
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~----------~~~~~~~~~  158 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----G----------IRVRTDFFE  158 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----T----------CCEECSCCS
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----C----------CCcceeeec
Confidence            44555555555555778999999999999999999999999999999999998876    2          112222222


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .. .... ++...++||+|+++.++++ .+....++.+.+.
T Consensus       159 ~~-~~~~-l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~  197 (416)
T 4e2x_A          159 KA-TADD-VRRTEGPANVIYAANTLCHIPYVQSVLEGVDAL  197 (416)
T ss_dssp             HH-HHHH-HHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHH
T ss_pred             hh-hHhh-cccCCCCEEEEEECChHHhcCCHHHHHHHHHHH
Confidence            11 1111 1223578999999999988 5666666665543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.15  E-value=1.9e-10  Score=93.61  Aligned_cols=98  Identities=11%  Similarity=0.124  Sum_probs=64.6

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHH-------HHHHHHhcCCCCCCCCCcEEEEEe-ecCC
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKIL-------KKNIEHHTSSENPNSDAGLAVAKL-EWGN  140 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~-------~~n~~~n~~~~~~~~~~~~~~~~~-~~~~  140 (180)
                      ...++.+|||||||+|..++.+|+. + .+|+++|.++.+++.|       ++|+..++..     ..++.+... ++..
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-----~~nV~~i~gD~~~~  313 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-----LNNVEFSLKKSFVD  313 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-----CCCEEEEESSCSTT
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-----CCceEEEEcCcccc
Confidence            3457789999999999999999985 4 5899999999999988       8888877521     123444432 2211


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      ...+.    ....+||+|+++.+++..+....+..+.
T Consensus       314 ~~~~~----~~~~~FDvIvvn~~l~~~d~~~~L~el~  346 (433)
T 1u2z_A          314 NNRVA----ELIPQCDVILVNNFLFDEDLNKKVEKIL  346 (433)
T ss_dssp             CHHHH----HHGGGCSEEEECCTTCCHHHHHHHHHHH
T ss_pred             ccccc----cccCCCCEEEEeCccccccHHHHHHHHH
Confidence            11110    1135799999987775444444444443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.15  E-value=1.9e-10  Score=85.24  Aligned_cols=78  Identities=9%  Similarity=0.092  Sum_probs=57.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .+.+|||||||+|..++.+|+.  +.+|+++|+++.+++.|++|+..++.       .++.+...+...   +...  ..
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-------~nv~~~~~d~~~---l~~~--~~  105 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-------QNVKLLNIDADT---LTDV--FE  105 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-------SSEEEECCCGGG---HHHH--CC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-------CCEEEEeCCHHH---HHhh--cC
Confidence            4668999999999999999886  67999999999999999999998762       234444433322   2111  23


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      .+.||.|+++.+
T Consensus       106 ~~~~d~v~~~~~  117 (213)
T 2fca_A          106 PGEVKRVYLNFS  117 (213)
T ss_dssp             TTSCCEEEEESC
T ss_pred             cCCcCEEEEECC
Confidence            568999987643

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.14  E-value=4.8e-10  Score=84.76  Aligned_cols=79  Identities=14%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCCchhh
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      ....++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.+ +       ..++.+...++.+..   
T Consensus        92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-------~~~v~~~~~d~~~~~---  161 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-------VENVRFHLGKLEEAE---  161 (258)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-------CCCEEEEESCGGGCC---
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-------CCCEEEEECchhhcC---
Confidence            33457789999999999999999887   579999999999999999999887 5       124555555443321   


Q ss_pred             HHHhhCCCCCcEEEEcc
Q 030274          146 KIIQKYPGGFDLILGAD  162 (180)
Q Consensus       146 ~~~~~~~~~fD~Ii~~d  162 (180)
                          ...++||+|+++.
T Consensus       162 ----~~~~~~D~v~~~~  174 (258)
T 2pwy_A          162 ----LEEAAYDGVALDL  174 (258)
T ss_dssp             ----CCTTCEEEEEEES
T ss_pred             ----CCCCCcCEEEECC
Confidence                1235799999864

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.14  E-value=5.3e-11  Score=90.87  Aligned_cols=48  Identities=21%  Similarity=0.353  Sum_probs=41.3

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..++.+|||||||+|..++.++..+. +|+++|+|+.+++.++++++.+
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC
Confidence            34678999999999988887777774 7999999999999999987654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.14  E-value=5e-10  Score=83.77  Aligned_cols=80  Identities=14%  Similarity=0.088  Sum_probs=58.6

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+.++++.+.         ++.+...+......+   
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~---------~v~~~~~d~~~~~~~---  141 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT---------NIIPVIEDARHPHKY---  141 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT---------TEEEECSCTTCGGGG---
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC---------CeEEEEcccCChhhh---
Confidence            3446789999999999999999876   3799999999999888888887752         355554444432111   


Q ss_pred             HhhCCCCCcEEEEccc
Q 030274          148 IQKYPGGFDLILGADI  163 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~  163 (180)
                       +....+||+|+++.+
T Consensus       142 -~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A          142 -RMLIAMVDVIFADVA  156 (233)
T ss_dssp             -GGGCCCEEEEEECCC
T ss_pred             -cccCCcEEEEEEcCC
Confidence             123568999999765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.13  E-value=3e-10  Score=84.06  Aligned_cols=77  Identities=13%  Similarity=0.117  Sum_probs=52.1

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++.+|||+|||+|..+..+++..  .+|+++|+|+.+++.+.++++...         ++.....+....   ... .
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~---------~v~~~~~d~~~~---~~~-~  121 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---------NIIPLLFDASKP---WKY-S  121 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---------SEEEECSCTTCG---GGT-T
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC---------CeEEEEcCCCCc---hhh-c
Confidence            3467899999999999999888763  699999999998887776655431         233332222221   000 0


Q ss_pred             hCCCCCcEEEEc
Q 030274          150 KYPGGFDLILGA  161 (180)
Q Consensus       150 ~~~~~fD~Ii~~  161 (180)
                      ...++||+|+++
T Consensus       122 ~~~~~fD~V~~~  133 (210)
T 1nt2_A          122 GIVEKVDLIYQD  133 (210)
T ss_dssp             TTCCCEEEEEEC
T ss_pred             ccccceeEEEEe
Confidence            123689999987

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.13  E-value=1.1e-10  Score=90.81  Aligned_cols=84  Identities=12%  Similarity=0.107  Sum_probs=64.4

Q ss_pred             CCCeEEEeCCcCChHHHHHh--hc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCS--RF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la--~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.++  .. +.+|+++|+++.+++.+++|+..++.      ..++.+...++.+..        
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~--------  183 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL------AGQITLHRQDAWKLD--------  183 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT------GGGEEEEECCGGGCC--------
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC------CCceEEEECchhcCC--------
Confidence            67899999999999999885  22 57999999999999999999987652      224666666555431        


Q ss_pred             CCCCCcEEEEccccccC-Cchh
Q 030274          151 YPGGFDLILGADIYILY-NRSL  171 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~-~~~~  171 (180)
                      ..++||+|+++.++++. +...
T Consensus       184 ~~~~fD~v~~~~~~~~~~~~~~  205 (305)
T 3ocj_A          184 TREGYDLLTSNGLNIYEPDDAR  205 (305)
T ss_dssp             CCSCEEEEECCSSGGGCCCHHH
T ss_pred             ccCCeEEEEECChhhhcCCHHH
Confidence            23789999999988773 4443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.13  E-value=3.5e-10  Score=84.54  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             hCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274           68 KNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +.....++.+|||+|||+|.+++.+++. + .+|+++|+++.+++.+++|++.+         .++.+...+......  
T Consensus        68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~~v~~~~~d~~~~~~--  136 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---------ENIIPILGDANKPQE--  136 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---------TTEEEEECCTTCGGG--
T ss_pred             cccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---------CCeEEEECCCCCccc--
Confidence            3333446789999999999999999987 3 79999999999999999987654         235555544443211  


Q ss_pred             HHHhhCCCCCcEEE
Q 030274          146 KIIQKYPGGFDLIL  159 (180)
Q Consensus       146 ~~~~~~~~~fD~Ii  159 (180)
                       ..+ ...+||+|+
T Consensus       137 -~~~-~~~~~D~v~  148 (230)
T 1fbn_A          137 -YAN-IVEKVDVIY  148 (230)
T ss_dssp             -GTT-TSCCEEEEE
T ss_pred             -ccc-cCccEEEEE
Confidence             011 136899999

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.12  E-value=1e-10  Score=94.29  Aligned_cols=87  Identities=10%  Similarity=0.056  Sum_probs=60.8

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc-CC-eEEEecCCHHHHHHHHHHHH-------HhcCCCCCCCCCcEEEEEeecCCC
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF-CR-EVLLTDHNEEVLKILKKNIE-------HHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n~~-------~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ...++.+|||||||+|.+++.+|+. +. +|+|+|+++.+++.|++|++       .++..     ..++.+...+..+.
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-----~~rVefi~GD~~~l  244 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-----HAEYTLERGDFLSE  244 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-----CCEEEEEECCTTSH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEEECcccCC
Confidence            3457889999999999999988864 54 69999999999999998764       23310     13456666555543


Q ss_pred             chhhHHHhhCCCCCcEEEEccccccC
Q 030274          142 DQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      + +.    .....||+|+++.+++..
T Consensus       245 p-~~----d~~~~aDVVf~Nn~~F~p  265 (438)
T 3uwp_A          245 E-WR----ERIANTSVIFVNNFAFGP  265 (438)
T ss_dssp             H-HH----HHHHTCSEEEECCTTCCH
T ss_pred             c-cc----cccCCccEEEEcccccCc
Confidence            2 11    111379999999876653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.12  E-value=9e-10  Score=85.88  Aligned_cols=110  Identities=14%  Similarity=0.061  Sum_probs=63.4

Q ss_pred             ecchHHHHHHHHhhCCC-CCCCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           55 VWPGAMLMNDYLSKNPD-VLQASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~-~~~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      .|-.+..+..++..... ..++.+|||||||+|.....+++ .+.+|+++|+|+.+++.|+++....+.... ....++.
T Consensus        28 n~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~-~~~~~~~  106 (302)
T 2vdw_A           28 NYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK-TKYYKFD  106 (302)
T ss_dssp             HHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC-----CCCEEE
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc-ccccccc
Confidence            45555555555443211 12467999999999965544444 457999999999999999998876541100 0000122


Q ss_pred             EEEeecCCCchh-hHHHh-hCCCCCcEEEEcccccc
Q 030274          133 VAKLEWGNSDQI-NKIIQ-KYPGGFDLILGADIYIL  166 (180)
Q Consensus       133 ~~~~~~~~~~~~-~~~~~-~~~~~fD~Ii~~d~~y~  166 (180)
                      +...+... +.. ..+.. ...++||+|+|..++++
T Consensus       107 f~~~d~~~-d~~~~~l~~~~~~~~FD~V~~~~~lhy  141 (302)
T 2vdw_A          107 YIQETIRS-DTFVSSVREVFYFGKFNIIDWQFAIHY  141 (302)
T ss_dssp             EEECCTTS-SSHHHHHHTTCCSSCEEEEEEESCGGG
T ss_pred             hhhhhccc-chhhhhhhccccCCCeeEEEECchHHH
Confidence            33332221 111 11111 13468999999988754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.11  E-value=2.4e-10  Score=88.39  Aligned_cols=95  Identities=14%  Similarity=0.203  Sum_probs=62.7

Q ss_pred             CCCeEEEeCCcCChHHHHH----h-hc-CCe--EEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCCchh
Q 030274           74 QASSILELGSGVGVTGILC----S-RF-CRE--VLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a-~~-~~~--V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++.+|||||||+|.++..+    + +. +.+  ++++|.|++|++.+++++... +.       .+   ..+.|...+..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-------~~---v~~~~~~~~~~  121 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-------EN---VKFAWHKETSS  121 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-------TT---EEEEEECSCHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-------Cc---ceEEEEecchh
Confidence            5569999999999766432    2 21 344  499999999999999987653 21       12   33445444321


Q ss_pred             hHHHh-----hCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          145 NKIIQ-----KYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       145 ~~~~~-----~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                       .+..     ...++||+|+++.++++ .+....+..+.+.
T Consensus       122 -~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~  161 (292)
T 2aot_A          122 -EYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSL  161 (292)
T ss_dssp             -HHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHT
T ss_pred             -hhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHH
Confidence             2111     13578999999999988 5666666666543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.11  E-value=1.1e-10  Score=88.61  Aligned_cols=82  Identities=17%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.++.      ..++.+...+...  .+..+...
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------~~~i~~~~gda~~--~l~~l~~~  150 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV------DHKIDFREGPALP--VLDEMIKD  150 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC------GGGEEEEESCHHH--HHHHHHHS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCCeEEEECCHHH--HHHHHHhc
Confidence            5679999999999999999885   67999999999999999999998762      1234444332211  01111100


Q ss_pred             --CCCCCcEEEEccc
Q 030274          151 --YPGGFDLILGADI  163 (180)
Q Consensus       151 --~~~~fD~Ii~~d~  163 (180)
                        ..++||+|++...
T Consensus       151 ~~~~~~fD~V~~d~~  165 (247)
T 1sui_A          151 EKNHGSYDFIFVDAD  165 (247)
T ss_dssp             GGGTTCBSEEEECSC
T ss_pred             cCCCCCEEEEEEcCc
Confidence              1468999998643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.10  E-value=4.7e-10  Score=86.13  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=59.1

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...++.+|||+|||+|.+++.+++.   +.+|+++|.++.+++.+++|++.++.      ..++.+...++...      
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~------  176 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL------IERVTIKVRDISEG------  176 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC------GGGEEEECCCGGGC------
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CCCEEEEECCHHHc------
Confidence            3446789999999999999999886   57999999999999999999988752      12344444333321      


Q ss_pred             HhhCCCCCcEEEEccc
Q 030274          148 IQKYPGGFDLILGADI  163 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~  163 (180)
                        ...++||+|+++.+
T Consensus       177 --~~~~~~D~V~~~~~  190 (277)
T 1o54_A          177 --FDEKDVDALFLDVP  190 (277)
T ss_dssp             --CSCCSEEEEEECCS
T ss_pred             --ccCCccCEEEECCc
Confidence              12357999999654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.10  E-value=3e-10  Score=84.78  Aligned_cols=84  Identities=13%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+.+++.+..  .++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++++..            ++.+...+...
T Consensus        29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~------------~~~~~~~d~~~   94 (239)
T 3bxo_A           29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLP------------DATLHQGDMRD   94 (239)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCT------------TCEEEECCTTT
T ss_pred             HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCC------------CCEEEECCHHH
Confidence            4555555543  366799999999999999999887899999999999999998741            24455555543


Q ss_pred             CchhhHHHhhCCCCCcEEEE-cccccc
Q 030274          141 SDQINKIIQKYPGGFDLILG-ADIYIL  166 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~-~d~~y~  166 (180)
                      ..        ..++||+|++ .+++.+
T Consensus        95 ~~--------~~~~~D~v~~~~~~~~~  113 (239)
T 3bxo_A           95 FR--------LGRKFSAVVSMFSSVGY  113 (239)
T ss_dssp             CC--------CSSCEEEEEECTTGGGG
T ss_pred             cc--------cCCCCcEEEEcCchHhh
Confidence            21        2468999995 446655

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.10  E-value=2e-10  Score=85.02  Aligned_cols=86  Identities=14%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++..              .+...+.....     .+...
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~--------------~~~~~d~~~~~-----~~~~~   91 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD--------------HVVLGDIETMD-----MPYEE   91 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS--------------EEEESCTTTCC-----CCSCT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC--------------cEEEcchhhcC-----CCCCC
Confidence            367799999999999999998888999999999999998887531              14444443211     01124


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHH
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                      ++||+|+++.++++ .+...++..+.
T Consensus        92 ~~fD~v~~~~~l~~~~~~~~~l~~~~  117 (230)
T 3cc8_A           92 EQFDCVIFGDVLEHLFDPWAVIEKVK  117 (230)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHTG
T ss_pred             CccCEEEECChhhhcCCHHHHHHHHH
Confidence            68999999999877 45555554443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.09  E-value=1.3e-09  Score=87.00  Aligned_cols=90  Identities=11%  Similarity=0.116  Sum_probs=68.1

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|..+..+++.  +.+++++|+ +.+++.+++++..++.      ..++.+...++.+.         
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~---------  244 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL------ADRVTVAEGDFFKP---------  244 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC------TTTEEEEECCTTSC---------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC------CCceEEEeCCCCCc---------
Confidence            45679999999999999998876  469999999 9999999999988752      23577777766532         


Q ss_pred             CCCCCcEEEEccccccCCch---hhHHHHHH
Q 030274          151 YPGGFDLILGADIYILYNRS---LLMTSFFQ  178 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~  178 (180)
                      .+..||+|+++.++++....   .+++.+.+
T Consensus       245 ~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~  275 (374)
T 1qzz_A          245 LPVTADVVLLSFVLLNWSDEDALTILRGCVR  275 (374)
T ss_dssp             CSCCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeccccCCCHHHHHHHHHHHHH
Confidence            13359999999998764333   44555444

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.09  E-value=2.4e-10  Score=84.16  Aligned_cols=76  Identities=12%  Similarity=0.158  Sum_probs=56.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|++.++.      ..++.+...+...      ..+.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~------~~~~  123 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL------IDRVELQVGDPLG------IAAG  123 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG------GGGEEEEESCHHH------HHTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC------CceEEEEEecHHH------Hhcc
Confidence            5679999999999999999876   67999999999999999999988752      1234444333221      1122


Q ss_pred             CCCCCcEEEEcc
Q 030274          151 YPGGFDLILGAD  162 (180)
Q Consensus       151 ~~~~fD~Ii~~d  162 (180)
                      ..+ ||+|++..
T Consensus       124 ~~~-fD~v~~~~  134 (210)
T 3c3p_A          124 QRD-IDILFMDC  134 (210)
T ss_dssp             CCS-EEEEEEET
T ss_pred             CCC-CCEEEEcC
Confidence            345 99999864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.09  E-value=5.4e-10  Score=83.09  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=62.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCC-------eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274           73 LQASSILELGSGVGVTGILCSRFCR-------EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~-------~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      .++.+|||+|||+|..++.+++...       +|+++|.++.+++.+++|+..++...  ....++.+...+.....  .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~v~~~~~d~~~~~--~  154 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL--LKIDNFKIIHKNIYQVN--E  154 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG--GSSTTEEEEECCGGGCC--H
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc--cccCCEEEEECChHhcc--c
Confidence            3678999999999999999998653       99999999999999999998874100  00124556555544321  0


Q ss_pred             HHHhhCCCCCcEEEEcccccc
Q 030274          146 KIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       146 ~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .. .....+||+|+++.++.+
T Consensus       155 ~~-~~~~~~fD~I~~~~~~~~  174 (227)
T 2pbf_A          155 EE-KKELGLFDAIHVGASASE  174 (227)
T ss_dssp             HH-HHHHCCEEEEEECSBBSS
T ss_pred             cc-CccCCCcCEEEECCchHH
Confidence            00 011357999999987654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.09  E-value=8.9e-11  Score=87.41  Aligned_cols=81  Identities=12%  Similarity=0.123  Sum_probs=58.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.++.      ..++.+...+...  .+..+ ..
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~------~~~i~~~~~d~~~--~~~~~-~~  139 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA------EHKIDLRLKPALE--TLDEL-LA  139 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC------TTTEEEEESCHHH--HHHHH-HH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC------CCeEEEEEcCHHH--HHHHH-Hh
Confidence            5679999999999999999875   57999999999999999999998862      1245554433221  11111 11


Q ss_pred             CC--CCCcEEEEccc
Q 030274          151 YP--GGFDLILGADI  163 (180)
Q Consensus       151 ~~--~~fD~Ii~~d~  163 (180)
                      ..  ++||+|++..+
T Consensus       140 ~~~~~~~D~v~~d~~  154 (229)
T 2avd_A          140 AGEAGTFDVAVVDAD  154 (229)
T ss_dssp             TTCTTCEEEEEECSC
T ss_pred             cCCCCCccEEEECCC
Confidence            11  68999999765

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.08  E-value=1.4e-10  Score=92.86  Aligned_cols=81  Identities=16%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+| |+|.+++.+++.+  .+|+++|+++.+++.+++|++.++.       .++.+...++...  +..   .
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-------~~v~~~~~D~~~~--l~~---~  237 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-------EDIEIFTFDLRKP--LPD---Y  237 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-------CCEEEECCCTTSC--CCT---T
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEEChhhhh--chh---h
Confidence            3678999999 9999999998875  5999999999999999999999862       1455555554431  100   1


Q ss_pred             CCCCCcEEEEcccccc
Q 030274          151 YPGGFDLILGADIYIL  166 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~  166 (180)
                      ..++||+|++++|+..
T Consensus       238 ~~~~fD~Vi~~~p~~~  253 (373)
T 2qm3_A          238 ALHKFDTFITDPPETL  253 (373)
T ss_dssp             TSSCBSEEEECCCSSH
T ss_pred             ccCCccEEEECCCCch
Confidence            2358999999998643

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.08  E-value=6.4e-10  Score=85.45  Aligned_cols=95  Identities=16%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .++..++..+.    ..++.+|||+|||+|..++.+++.  + .+|+++|.++.+++.+++|++.++.       .++.+
T Consensus        70 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-------~~v~~  138 (274)
T 3ajd_A           70 ISSMIPPIVLN----PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-------LNTII  138 (274)
T ss_dssp             SGGGHHHHHHC----CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-------CSEEE
T ss_pred             HHHHHHHHHhC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-------CcEEE
Confidence            34455555553    236789999999999999988873  4 7999999999999999999999862       13444


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      ...+..   .+........++||+|++++|+.
T Consensus       139 ~~~D~~---~~~~~~~~~~~~fD~Vl~d~Pcs  167 (274)
T 3ajd_A          139 INADMR---KYKDYLLKNEIFFDKILLDAPCS  167 (274)
T ss_dssp             EESCHH---HHHHHHHHTTCCEEEEEEEECCC
T ss_pred             EeCChH---hcchhhhhccccCCEEEEcCCCC
Confidence            433322   11111111256899999987764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.08  E-value=2.2e-09  Score=85.76  Aligned_cols=94  Identities=13%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ...+..+|||+|||+|..+..+++.  +.+++++|+ +.+++.+++++...+.      ..++.+...++...       
T Consensus       199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l------~~~v~~~~~d~~~~-------  264 (369)
T 3gwz_A          199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL------ADRCEILPGDFFET-------  264 (369)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC------TTTEEEEECCTTTC-------
T ss_pred             CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc------CCceEEeccCCCCC-------
Confidence            3345679999999999999988876  569999999 9999999999988752      24577877777622       


Q ss_pred             hhCCCCCcEEEEccccccCCch---hhHHHHHHhC
Q 030274          149 QKYPGGFDLILGADIYILYNRS---LLMTSFFQAI  180 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~al  180 (180)
                        .+.+||+|+++.++++....   .+++.+.++|
T Consensus       265 --~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L  297 (369)
T 3gwz_A          265 --IPDGADVYLIKHVLHDWDDDDVVRILRRIATAM  297 (369)
T ss_dssp             --CCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTC
T ss_pred             --CCCCceEEEhhhhhccCCHHHHHHHHHHHHHHc
Confidence              13379999999998774433   4566665543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.06  E-value=4.5e-10  Score=86.63  Aligned_cols=92  Identities=13%  Similarity=0.077  Sum_probs=62.6

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCe----EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCRE----VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~----V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      .+.+.+.....++.+|||||||+|.++..+++.+.+    |+++|+++.+++.++++. ..          ++.+...|.
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~----------~v~~i~~D~   99 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GE----------LLELHAGDA   99 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GG----------GEEEEESCG
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CC----------CcEEEECCh
Confidence            333433333346789999999999999999988776    999999999999999984 22          356666555


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ...+ +..+..........|++|.|+|-
T Consensus       100 ~~~~-~~~~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A          100 LTFD-FGSIARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             GGCC-GGGGSCSSSSCCEEEEEECCHHH
T ss_pred             hcCC-hhHhcccccCCceEEEEccCccc
Confidence            5432 11110000013568999998876

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.06  E-value=3.2e-11  Score=91.20  Aligned_cols=82  Identities=18%  Similarity=0.155  Sum_probs=58.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|++.++..      .++.+...+....  +..+...
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------~~i~~~~gda~~~--l~~~~~~  131 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE------HKIKLRLGPALDT--LHSLLNE  131 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT------TTEEEEESCHHHH--HHHHHHH
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEEcCHHHH--HHHHhhc
Confidence            5679999999999999999984   579999999999999999999988632      3455554332211  1111000


Q ss_pred             -CCCCCcEEEEccc
Q 030274          151 -YPGGFDLILGADI  163 (180)
Q Consensus       151 -~~~~fD~Ii~~d~  163 (180)
                       ..++||+|++...
T Consensus       132 ~~~~~fD~V~~d~~  145 (242)
T 3r3h_A          132 GGEHQFDFIFIDAD  145 (242)
T ss_dssp             HCSSCEEEEEEESC
T ss_pred             cCCCCEeEEEEcCC
Confidence             1468999998654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.05  E-value=4.1e-10  Score=84.72  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||||||+|..+..+++. +.+|+++|+++.+++.|+++....+        .++.+...+|...   .  .....
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--------~~~~~~~~~a~~~---~--~~~~~  126 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------HKVIPLKGLWEDV---A--PTLPD  126 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--------SEEEEEESCHHHH---G--GGSCT
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--------CceEEEeehHHhh---c--ccccc
Confidence            6789999999999999999886 4789999999999999999987764        2344444433321   1  12245


Q ss_pred             CCCcEEEEccc
Q 030274          153 GGFDLILGADI  163 (180)
Q Consensus       153 ~~fD~Ii~~d~  163 (180)
                      .+||.|+...+
T Consensus       127 ~~FD~i~~D~~  137 (236)
T 3orh_A          127 GHFDGILYDTY  137 (236)
T ss_dssp             TCEEEEEECCC
T ss_pred             cCCceEEEeee
Confidence            68999986543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.05  E-value=1.7e-09  Score=82.91  Aligned_cols=81  Identities=15%  Similarity=0.238  Sum_probs=58.7

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.+ +.     ...++.+...+.....    
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-----~~~~v~~~~~d~~~~~----  166 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-----PPDNWRLVVSDLADSE----  166 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-----CCTTEEEECSCGGGCC----
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-----CCCcEEEEECchHhcC----
Confidence            3447789999999999999999885   579999999999999999999876 30     0123445444333211    


Q ss_pred             HHhhCCCCCcEEEEccc
Q 030274          147 IIQKYPGGFDLILGADI  163 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d~  163 (180)
                         ...++||+|+++.+
T Consensus       167 ---~~~~~~D~v~~~~~  180 (280)
T 1i9g_A          167 ---LPDGSVDRAVLDML  180 (280)
T ss_dssp             ---CCTTCEEEEEEESS
T ss_pred             ---CCCCceeEEEECCc
Confidence               12457999998543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.05  E-value=1.6e-09  Score=85.10  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|..+..+++.  +.+|+++|++ .+++.+++++..++.      ..++.+...++....        
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~--------  228 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV------ASRYHTIAGSAFEVD--------  228 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC------GGGEEEEESCTTTSC--------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC------CcceEEEecccccCC--------
Confidence            35679999999999999988876  5799999999 999999999987752      234777777665431        


Q ss_pred             CCCCCcEEEEccccccCCch---hhHHHHHH
Q 030274          151 YPGGFDLILGADIYILYNRS---LLMTSFFQ  178 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~  178 (180)
                      .+..||+|+++.++++....   .+++.+.+
T Consensus       229 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~  259 (335)
T 2r3s_A          229 YGNDYDLVLLPNFLHHFDVATCEQLLRKIKT  259 (335)
T ss_dssp             CCSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEcchhccCCHHHHHHHHHHHHH
Confidence            23459999999998774333   44444443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.04  E-value=1.5e-09  Score=84.60  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++...++.........++.+...+......... ++...
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDK-FRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTT-CSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhh-cccCC
Confidence            5679999999999999888865 579999999999999999998765310000011245566665554320000 01123


Q ss_pred             CCCcEEEEccccccC
Q 030274          153 GGFDLILGADIYILY  167 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~~  167 (180)
                      ++||+|+++.++++.
T Consensus       113 ~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A          113 MCFDICSCQFVCHYS  127 (313)
T ss_dssp             CCEEEEEEETCGGGG
T ss_pred             CCEEEEEEecchhhc
Confidence            489999999988663

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.03  E-value=2.3e-09  Score=79.58  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.+++|+..++...  ....++.+...+.....       
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~v~~~~~d~~~~~-------  146 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL--LSSGRVQLVVGDGRMGY-------  146 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH--HHTSSEEEEESCGGGCC-------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc--cCCCcEEEEECCcccCc-------
Confidence            36789999999999999998876 3  699999999999999999998764100  00123555555443221       


Q ss_pred             hCCCCCcEEEEcccccc
Q 030274          150 KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~  166 (180)
                      ....+||+|+++.++.+
T Consensus       147 ~~~~~fD~i~~~~~~~~  163 (226)
T 1i1n_A          147 AEEAPYDAIHVGAAAPV  163 (226)
T ss_dssp             GGGCCEEEEEECSBBSS
T ss_pred             ccCCCcCEEEECCchHH
Confidence            12357999999887643

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.03  E-value=4.9e-10  Score=90.22  Aligned_cols=77  Identities=14%  Similarity=0.235  Sum_probs=57.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc-EEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG-LAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++.+|||++||+|..|+.+++.  | .+|+++|+++.+++.+++|++.|+..      .+ +.+.     ..|.. .++.
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~------~~~v~v~-----~~Da~-~~l~  119 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP------EDRYEIH-----GMEAN-FFLR  119 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC------GGGEEEE-----CSCHH-HHHH
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC------CceEEEE-----eCCHH-HHHH
Confidence            4679999999999999998874  4 58999999999999999999999732      11 3332     22222 2222


Q ss_pred             -hCCCCCcEEEEcc
Q 030274          150 -KYPGGFDLILGAD  162 (180)
Q Consensus       150 -~~~~~fD~Ii~~d  162 (180)
                       ....+||+|++.|
T Consensus       120 ~~~~~~fD~V~lDP  133 (392)
T 3axs_A          120 KEWGFGFDYVDLDP  133 (392)
T ss_dssp             SCCSSCEEEEEECC
T ss_pred             HhhCCCCcEEEECC
Confidence             2346899999887

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.03  E-value=6.3e-10  Score=89.32  Aligned_cols=46  Identities=26%  Similarity=0.386  Sum_probs=42.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ++.+|||+|||+|..++.+++. + .+|+++|+++.+++.+++|++.|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n   94 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN   94 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            5779999999999999999886 3 68999999999999999999999

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.02  E-value=6.2e-10  Score=83.74  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++..+.      ..++.+...+..+.  +..+...
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~------~~~i~~~~gda~~~--l~~l~~~  141 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV------EHKINFIESDAMLA--LDNLLQG  141 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC------GGGEEEEESCHHHH--HHHHHHS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEEcCHHHH--HHHHHhc
Confidence            5679999999999999999875   67999999999999999999998762      12344444332211  1111111


Q ss_pred             --CCCCCcEEEEcc
Q 030274          151 --YPGGFDLILGAD  162 (180)
Q Consensus       151 --~~~~fD~Ii~~d  162 (180)
                        ..++||+|++..
T Consensus       142 ~~~~~~fD~I~~d~  155 (237)
T 3c3y_A          142 QESEGSYDFGFVDA  155 (237)
T ss_dssp             TTCTTCEEEEEECS
T ss_pred             cCCCCCcCEEEECC
Confidence              146899999764

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.02  E-value=3e-09  Score=83.64  Aligned_cols=90  Identities=9%  Similarity=0.029  Sum_probs=68.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +..+|||+|||+|..+..+++.  +.+++++|. +.+++.+++++...+.      ..++.+...++...         .
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~---------~  232 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL------SGRAQVVVGSFFDP---------L  232 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC------TTTEEEEECCTTSC---------C
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc------CcCeEEecCCCCCC---------C
Confidence            4579999999999999988874  568999999 9999999999987652      24577777776522         1


Q ss_pred             CCCCcEEEEccccccCCc---hhhHHHHHHh
Q 030274          152 PGGFDLILGADIYILYNR---SLLMTSFFQA  179 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~---~~l~~~~~~a  179 (180)
                      +.+||+|+++.++++...   ..+++.+.++
T Consensus       233 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~  263 (332)
T 3i53_A          233 PAGAGGYVLSAVLHDWDDLSAVAILRRCAEA  263 (332)
T ss_dssp             CCSCSEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEehhhccCCHHHHHHHHHHHHHh
Confidence            338999999999876433   4555555543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.02  E-value=9.9e-10  Score=82.49  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=43.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|+..++
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g  109 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG  109 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            5679999999999999999886   5799999999999999999998876

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.02  E-value=1e-09  Score=82.22  Aligned_cols=81  Identities=16%  Similarity=0.155  Sum_probs=57.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|++.++..      .++.+...+...  .+..+ ..
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------~~i~~~~~d~~~--~l~~l-~~  142 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA------EKISLRLGPALA--TLEQL-TQ  142 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG------GGEEEEESCHHH--HHHHH-HT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEEcCHHH--HHHHH-Hh
Confidence            5679999999999999999875   569999999999999999999887621      234444332211  11111 11


Q ss_pred             CC--CCCcEEEEccc
Q 030274          151 YP--GGFDLILGADI  163 (180)
Q Consensus       151 ~~--~~fD~Ii~~d~  163 (180)
                      ..  ++||+|++...
T Consensus       143 ~~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          143 GKPLPEFDLIFIDAD  157 (232)
T ss_dssp             SSSCCCEEEEEECSC
T ss_pred             cCCCCCcCEEEECCC
Confidence            12  68999997654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.00  E-value=2.5e-09  Score=84.87  Aligned_cols=90  Identities=11%  Similarity=0.161  Sum_probs=67.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|..+..+++.  ..+++++|+ +.+++.+++|+..++.      ..++.+...++.+.         
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~---------  245 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL------SDRVDVVEGDFFEP---------  245 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC------TTTEEEEECCTTSC---------
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC------CCceEEEeCCCCCC---------
Confidence            35679999999999999988876  368999999 8999999999988752      23577777776542         


Q ss_pred             CCCCCcEEEEccccccCCch---hhHHHHHH
Q 030274          151 YPGGFDLILGADIYILYNRS---LLMTSFFQ  178 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~  178 (180)
                      .+.+||+|+++.++++....   .+++.+.+
T Consensus       246 ~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~  276 (360)
T 1tw3_A          246 LPRKADAIILSFVLLNWPDHDAVRILTRCAE  276 (360)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             CCCCccEEEEcccccCCCHHHHHHHHHHHHH
Confidence            13359999999998764333   44554444

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.00  E-value=1e-09  Score=84.40  Aligned_cols=100  Identities=16%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             CCCeEEEeCCcCCh----HHHHHhhc------CCeEEEecCCHHHHHHHHHHHHHhc----CC-----------C---C-
Q 030274           74 QASSILELGSGVGV----TGILCSRF------CREVLLTDHNEEVLKILKKNIEHHT----SS-----------E---N-  124 (180)
Q Consensus        74 ~~~~vLdlG~G~G~----~~l~la~~------~~~V~~~D~~~~~l~~~~~n~~~n~----~~-----------~---~-  124 (180)
                      +..+|||+|||||.    +++.++..      +.+|+|||+|+.+++.|++++....    .+           .   . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34699999999997    66666654      3589999999999999998852100    00           0   0 


Q ss_pred             -----CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCc---hhhHHHHHHh
Q 030274          125 -----PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNR---SLLMTSFFQA  179 (180)
Q Consensus       125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~a  179 (180)
                           +....++.+...++.... +     ...++||+|+|..++.+.+.   ..++..+.++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~-~-----~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~  241 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQ-Y-----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPL  241 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSS-C-----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGG
T ss_pred             ceeechhhcccCeEEecccCCCC-C-----CcCCCeeEEEECCchHhCCHHHHHHHHHHHHHH
Confidence                 000124666666665421 0     01368999999998655333   3455555443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.00  E-value=1.6e-09  Score=85.00  Aligned_cols=90  Identities=13%  Similarity=0.066  Sum_probs=63.9

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .++..++..+.    ..++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|++.++..       ++.+
T Consensus       105 ~~s~l~~~~l~----~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-------~v~~  173 (315)
T 1ixk_A          105 ASSMYPPVALD----PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-------NVIL  173 (315)
T ss_dssp             HHHHHHHHHHC----CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-------SEEE
T ss_pred             HHHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-------eEEE
Confidence            34445555543    236779999999999999998874   369999999999999999999998721       3444


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ...+..   .+.    ...++||+|+++.|+
T Consensus       174 ~~~D~~---~~~----~~~~~fD~Il~d~Pc  197 (315)
T 1ixk_A          174 FHSSSL---HIG----ELNVEFDKILLDAPC  197 (315)
T ss_dssp             ESSCGG---GGG----GGCCCEEEEEEECCT
T ss_pred             EECChh---hcc----cccccCCEEEEeCCC
Confidence            333222   111    124689999998764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.00  E-value=4.5e-09  Score=83.55  Aligned_cols=92  Identities=11%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+ +.+++.+++++..++.      ..++.+...++.+..       
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~-------  253 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV------ADRMRGIAVDIYKES-------  253 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC------TTTEEEEECCTTTSC-------
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC------CCCEEEEeCccccCC-------
Confidence            346779999999999999998876  569999999 9999999999988752      234777776665431       


Q ss_pred             hCCCCCcEEEEccccccCC---chhhHHHHHHh
Q 030274          150 KYPGGFDLILGADIYILYN---RSLLMTSFFQA  179 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~---~~~l~~~~~~a  179 (180)
                        ...+|+|+++.++++-.   ...+++.+.++
T Consensus       254 --~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~  284 (359)
T 1x19_A          254 --YPEADAVLFCRILYSANEQLSTIMCKKAFDA  284 (359)
T ss_dssp             --CCCCSEEEEESCGGGSCHHHHHHHHHHHHTT
T ss_pred             --CCCCCEEEEechhccCCHHHHHHHHHHHHHh
Confidence              22359999999987643   34445554443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.00  E-value=1.6e-09  Score=85.22  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=66.3

Q ss_pred             CeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+|||+|||+|..+..+++.  +.+++++|. +.+++.+++++...+.      ..++.+...++.+.         .+.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~---------~~~  232 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA------GERVSLVGGDMLQE---------VPS  232 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH------TTSEEEEESCTTTC---------CCS
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC------CCcEEEecCCCCCC---------CCC
Confidence            89999999999999988875  579999999 9999999999876641      23467777666542         235


Q ss_pred             CCcEEEEccccccC-Cch--hhHHHHHHh
Q 030274          154 GFDLILGADIYILY-NRS--LLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~-~~~--~l~~~~~~a  179 (180)
                      +||+|+++.++++. +..  .+++.+.++
T Consensus       233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~  261 (334)
T 2ip2_A          233 NGDIYLLSRIIGDLDEAASLRLLGNCREA  261 (334)
T ss_dssp             SCSEEEEESCGGGCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEchhccCCCHHHHHHHHHHHHHh
Confidence            79999999998753 222  455555444

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.00  E-value=8.2e-10  Score=86.03  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=60.9

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|++.++        .++.+...++.+   +...+..
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--------~~v~~v~~d~~~---l~~~l~~   93 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--------DRVSLFKVSYRE---ADFLLKT   93 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--------TTEEEEECCGGG---HHHHHHH
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEECCHHH---HHHHHHh
Confidence            36779999999999999998876  4799999999999999999988764        246666655543   2222222


Q ss_pred             -CCCCCcEEEEcccc
Q 030274          151 -YPGGFDLILGADIY  164 (180)
Q Consensus       151 -~~~~fD~Ii~~d~~  164 (180)
                       ...+||.|+++.++
T Consensus        94 ~g~~~~D~Vl~D~gv  108 (301)
T 1m6y_A           94 LGIEKVDGILMDLGV  108 (301)
T ss_dssp             TTCSCEEEEEEECSC
T ss_pred             cCCCCCCEEEEcCcc
Confidence             12579999987653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.99  E-value=2.5e-09  Score=84.63  Aligned_cols=96  Identities=14%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CCCC-CCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQ-ASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~-~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...+ +.+|||+|||+|..+..+++.  +.+++++|. +.+++.+++++...+.      ..++.+...++.....    
T Consensus       175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~----  243 (352)
T 3mcz_A          175 GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL------GGRVEFFEKNLLDARN----  243 (352)
T ss_dssp             GGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC------GGGEEEEECCTTCGGG----
T ss_pred             CCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC------CCceEEEeCCcccCcc----
Confidence            3345 789999999999999988875  579999999 8899999999887652      2357777777665421    


Q ss_pred             HhhCCCCCcEEEEccccccCCc---hhhHHHHHHh
Q 030274          148 IQKYPGGFDLILGADIYILYNR---SLLMTSFFQA  179 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~a  179 (180)
                        ..+.+||+|+++.++++...   ..+++.+.++
T Consensus       244 --~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~  276 (352)
T 3mcz_A          244 --FEGGAADVVMLNDCLHYFDAREAREVIGHAAGL  276 (352)
T ss_dssp             --GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred             --cCCCCccEEEEecccccCCHHHHHHHHHHHHHH
Confidence              13457999999999877433   3455555443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.99  E-value=5.6e-10  Score=84.79  Aligned_cols=88  Identities=13%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      +.+.+.+.....++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++| ..          .++.+...+...
T Consensus        19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~~----------~~v~~i~~D~~~   87 (249)
T 3ftd_A           19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-GD----------ERLEVINEDASK   87 (249)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-CC----------TTEEEECSCTTT
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-cC----------CCeEEEEcchhh
Confidence            34444444444467899999999999999999985 8999999999999999887 21          235555555444


Q ss_pred             CchhhHHHhhCCCCCcEEEEcccccc
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .+ +    +..... ..|++|.|++.
T Consensus        88 ~~-~----~~~~~~-~~vv~NlPy~i  107 (249)
T 3ftd_A           88 FP-F----CSLGKE-LKVVGNLPYNV  107 (249)
T ss_dssp             CC-G----GGSCSS-EEEEEECCTTT
T ss_pred             CC-h----hHccCC-cEEEEECchhc
Confidence            32 1    111123 37888887754

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.99  E-value=2.5e-10  Score=87.07  Aligned_cols=86  Identities=8%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             CeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC--CCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS--DAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+|||+|||+|..++.+|+.|++|+++|.++.+.+.+++|++........+.  ..++++...+-     .. +++....
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~-----~~-~L~~~~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-----LT-ALTDITP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH-----HH-HSTTCSS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH-----HH-HHHhCcc
Confidence            7999999999999999999888999999999998888888764321000000  01244433221     11 1122234


Q ss_pred             CCcEEEEccccccC
Q 030274          154 GFDLILGADIYILY  167 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~  167 (180)
                      +||+|++.|++...
T Consensus       164 ~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          164 RPQVVYLDPMFPHK  177 (258)
T ss_dssp             CCSEEEECCCCCCC
T ss_pred             cCCEEEEcCCCCCc
Confidence            79999999877553

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.98  E-value=6.2e-09  Score=78.16  Aligned_cols=91  Identities=11%  Similarity=0.055  Sum_probs=59.2

Q ss_pred             HHHHHHhhCC---CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           61 LMNDYLSKNP---DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        61 ~l~~~l~~~~---~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      .++..+.+..   ...++.+|||+|||+|..+..+|+.   ..+|+++|.++.+++.+.+.+...         .++...
T Consensus        60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---------~nv~~i  130 (232)
T 3id6_C           60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---------PNIFPL  130 (232)
T ss_dssp             HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---------TTEEEE
T ss_pred             HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---------CCeEEE
Confidence            4455554432   3557889999999999999988875   359999999999876655444332         135555


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ..+-......    .....+||+|+++-+.
T Consensus       131 ~~Da~~~~~~----~~~~~~~D~I~~d~a~  156 (232)
T 3id6_C          131 LADARFPQSY----KSVVENVDVLYVDIAQ  156 (232)
T ss_dssp             ECCTTCGGGT----TTTCCCEEEEEECCCC
T ss_pred             Ecccccchhh----hccccceEEEEecCCC
Confidence            4444332111    1124689999987543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.98  E-value=3.7e-09  Score=81.27  Aligned_cols=98  Identities=16%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             CCCeEEEeCCcC---ChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH-
Q 030274           74 QASSILELGSGV---GVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI-  147 (180)
Q Consensus        74 ~~~~vLdlG~G~---G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  147 (180)
                      ...+|||||||+   |.....+++.  +.+|+++|.|+.|++.+++++..+         .++.+...+..+.+..... 
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---------~~v~~~~~D~~~~~~~~~~~  147 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---------PNTAVFTADVRDPEYILNHP  147 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---------TTEEEEECCTTCHHHHHHSH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---------CCeEEEEeeCCCchhhhccc
Confidence            346999999999   9877666653  579999999999999999987432         2466777766553211000 


Q ss_pred             --Hh-hCCCCCcEEEEcccccc-CC--chhhHHHHHHhC
Q 030274          148 --IQ-KYPGGFDLILGADIYIL-YN--RSLLMTSFFQAI  180 (180)
Q Consensus       148 --~~-~~~~~fD~Ii~~d~~y~-~~--~~~l~~~~~~al  180 (180)
                        .. ....+||+|+++.++++ .+  ...+++.+.++|
T Consensus       148 ~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L  186 (274)
T 2qe6_A          148 DVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDAL  186 (274)
T ss_dssp             HHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHS
T ss_pred             hhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhC
Confidence              00 12248999999999887 33  456666665543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.98  E-value=3.1e-09  Score=83.75  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhc----CCCCCCCCCcEEEEEeecCCCchh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHT----SSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~----~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ..++.+|||+|||+|..++.+++. +  .+|+++|.++.+++.+++|+...+    .+.......++.+...+.....  
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~--  180 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT--  180 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc--
Confidence            347789999999999999999986 4  799999999999999999998532    0000001134666655554421  


Q ss_pred             hHHHhhCCCCCcEEEEcccc
Q 030274          145 NKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ..   ...++||+|+++.+.
T Consensus       181 ~~---~~~~~fD~V~~~~~~  197 (336)
T 2b25_A          181 ED---IKSLTFDAVALDMLN  197 (336)
T ss_dssp             ----------EEEEEECSSS
T ss_pred             cc---cCCCCeeEEEECCCC
Confidence            01   123579999987543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.98  E-value=5.1e-09  Score=90.22  Aligned_cols=97  Identities=10%  Similarity=0.076  Sum_probs=71.0

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC------------------------------------------
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC------------------------------------------   96 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~------------------------------------------   96 (180)
                      .+.|+..+.......++.++||.+||+|.+.+.+|..+                                          
T Consensus       175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            36777777766555577899999999999998877542                                          


Q ss_pred             --CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274           97 --REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus        97 --~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                        .+|+++|+++.+++.|+.|+..++..      ..+.+...+..+...     +...++||+|++|||+-.
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~agv~------~~i~~~~~D~~~~~~-----~~~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAGIG------ELITFEVKDVAQLTN-----PLPKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCG------GGEEEEECCGGGCCC-----SCTTCCCCEEEECCCCCC
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCC------CceEEEECChhhCcc-----ccccCCCCEEEeCCCccc
Confidence              47999999999999999999999732      235555554443210     001237999999999854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.97  E-value=1.4e-09  Score=89.29  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=64.8

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      -+++..++..+.-    .++.+|||+|||+|..++.+|+.   ..+|+++|+++.+++.+++|++.++.        .+.
T Consensus        87 d~ss~l~a~~L~~----~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~--------~v~  154 (464)
T 3m6w_A           87 EPSAQAVGVLLDP----KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA--------PLA  154 (464)
T ss_dssp             CTTTHHHHHHHCC----CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC--------CCE
T ss_pred             CHHHHHHHHhcCc----CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--------eEE
Confidence            3455666666642    26789999999999999998865   26899999999999999999999972        122


Q ss_pred             EEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      +.   -++...+.   ....++||+|++++|+
T Consensus       155 ~~---~~Da~~l~---~~~~~~FD~Il~D~Pc  180 (464)
T 3m6w_A          155 VT---QAPPRALA---EAFGTYFHRVLLDAPC  180 (464)
T ss_dssp             EE---CSCHHHHH---HHHCSCEEEEEEECCC
T ss_pred             EE---ECCHHHhh---hhccccCCEEEECCCc
Confidence            22   22222221   1135689999987765

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.97  E-value=4e-09  Score=84.08  Aligned_cols=92  Identities=17%  Similarity=0.348  Sum_probs=68.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc-hhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD-QINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  150 (180)
                      ...+|||+|||+|..+..+++.  +.+|+++|. +.+++.+++++...+.      ..++.+...++.... .       
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~-------  244 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG------SERIHGHGANLLDRDVP-------  244 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT------GGGEEEEECCCCSSSCC-------
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc------ccceEEEEccccccCCC-------
Confidence            5579999999999999998874  579999999 9999999999876541      235777777766531 1       


Q ss_pred             CCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          151 YPGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                      .+++||+|+++.++++-...   .+++.+.++
T Consensus       245 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~  276 (363)
T 3dp7_A          245 FPTGFDAVWMSQFLDCFSEEEVISILTRVAQS  276 (363)
T ss_dssp             CCCCCSEEEEESCSTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCcCEEEEechhhhCCHHHHHHHHHHHHHh
Confidence            13689999999998763332   445555554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.97  E-value=1.1e-09  Score=89.68  Aligned_cols=93  Identities=19%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL  131 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~  131 (180)
                      --+++..++..+.-    .++.+|||+|||+|..++.+|..   ..+|+++|+++.+++.+++|++.++..       ++
T Consensus        90 Qd~ss~l~~~~L~~----~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-------nv  158 (456)
T 3m4x_A           90 QEPSAMIVGTAAAA----KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-------NA  158 (456)
T ss_dssp             CCTTTHHHHHHHCC----CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-------SE
T ss_pred             ECHHHHHHHHHcCC----CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------ce
Confidence            34456666666642    36789999999999999988875   369999999999999999999999732       23


Q ss_pred             EEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          132 AVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      .+..   .+...+.   ....++||+|++++|+
T Consensus       159 ~v~~---~Da~~l~---~~~~~~FD~Il~DaPC  185 (456)
T 3m4x_A          159 IVTN---HAPAELV---PHFSGFFDRIVVDAPC  185 (456)
T ss_dssp             EEEC---CCHHHHH---HHHTTCEEEEEEECCC
T ss_pred             EEEe---CCHHHhh---hhccccCCEEEECCCC
Confidence            3332   2222221   1135689999998874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.96  E-value=1.1e-09  Score=86.65  Aligned_cols=75  Identities=8%  Similarity=0.004  Sum_probs=58.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           74 QASSILELGSGVGVTGILCSRFC-------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ++.+|||+|||+|.+++.+++..       .+|+++|+++.+++.|+.|+..++.        ++.+...+....     
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--------~~~i~~~D~l~~-----  196 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--------KMTLLHQDGLAN-----  196 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--------CCEEEESCTTSC-----
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--------CceEEECCCCCc-----
Confidence            55799999999999999887653       6899999999999999999998862        233444443322     


Q ss_pred             HHhhCCCCCcEEEEcccc
Q 030274          147 IIQKYPGGFDLILGADIY  164 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d~~  164 (180)
                         ....+||+|+++||+
T Consensus       197 ---~~~~~fD~Ii~NPPf  211 (344)
T 2f8l_A          197 ---LLVDPVDVVISDLPV  211 (344)
T ss_dssp             ---CCCCCEEEEEEECCC
T ss_pred             ---cccCCccEEEECCCC
Confidence               124689999999996

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.96  E-value=1.8e-09  Score=76.39  Aligned_cols=92  Identities=7%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      +...+.+.+.......++.+|||+|||+|..+..+++.   +.+|+++|.++ +++.                 .++.+.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------------~~~~~~   67 (180)
T 1ej0_A            6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------------VGVDFL   67 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------------TTEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------------CcEEEE
Confidence            34445555554333346779999999999999998876   37999999998 6432                 135566


Q ss_pred             EeecCCCchhhHHHh-hCCCCCcEEEEccccccC
Q 030274          135 KLEWGNSDQINKIIQ-KYPGGFDLILGADIYILY  167 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~  167 (180)
                      ..++...+....+.. ...++||+|+++.+++..
T Consensus        68 ~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~  101 (180)
T 1ej0_A           68 QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             ESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             EcccccchhhhhhhccCCCCceeEEEECCCcccc
Confidence            666554321111111 235689999999887653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.95  E-value=1.2e-09  Score=83.17  Aligned_cols=92  Identities=11%  Similarity=0.113  Sum_probs=60.2

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCe--EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCRE--VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~--V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      +.+.+.+.....++.+|||+|||+|.++. +++ +.+  |+++|+++.+++.+++++..+.         ++.+...+..
T Consensus         9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~---------~v~~i~~D~~   77 (252)
T 1qyr_A            9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGP---------KLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGG---------GEEEECSCGG
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCC---------ceEEEECchh
Confidence            33444433334467799999999999999 765 567  9999999999999998865431         3555554444


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..+ +..... .....+.|++|.|+|-
T Consensus        78 ~~~-~~~~~~-~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           78 TFN-FGELAE-KMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             GCC-HHHHHH-HHTSCEEEEEECCTTT
T ss_pred             hCC-HHHhhc-ccCCceEEEECCCCCc
Confidence            322 111110 0124688999998765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.95  E-value=1.1e-09  Score=84.38  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=37.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ++.+|||||||+|..++.+++ .+.+|+++|+|+.+++.+++++.
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            677999999999996665555 36799999999999999998764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.95  E-value=7.8e-09  Score=77.74  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=57.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||||||+|..++.+|+.  +.+|+++|+++.+++.|++++....... .....++.+...+....  +...  ..
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~-~~~~~nv~~~~~d~~~~--l~~~--~~  120 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP-AGGFQNIACLRSNAMKH--LPNF--FY  120 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST-TCCCTTEEEEECCTTTC--HHHH--CC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH-hcCCCeEEEEECcHHHh--hhhh--CC
Confidence            4568999999999999999986  4799999999999999999886521000 00123566666555431  1111  13


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      .++||.|+++-
T Consensus       121 ~~~~D~v~~~~  131 (235)
T 3ckk_A          121 KGQLTKMFFLF  131 (235)
T ss_dssp             TTCEEEEEEES
T ss_pred             CcCeeEEEEeC
Confidence            56899998763

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.95  E-value=3.1e-09  Score=79.13  Aligned_cols=85  Identities=16%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc-C-------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           73 LQASSILELGSGVGVTGILCSRF-C-------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~-~-------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .++.+|||+|||+|..+..+++. +       .+|+++|.++.+++.+++|+..++...  ....++.+...+....  +
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~v~~~~~d~~~~--~  158 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM--LDSGQLLIVEGDGRKG--Y  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH--HHHTSEEEEESCGGGC--C
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc--cCCCceEEEECCcccC--C
Confidence            36789999999999999998874 4       499999999999999999987653000  0001355555444321  1


Q ss_pred             hHHHhhCCCCCcEEEEcccccc
Q 030274          145 NKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                          + ..++||+|+++.++.+
T Consensus       159 ----~-~~~~fD~I~~~~~~~~  175 (227)
T 1r18_A          159 ----P-PNAPYNAIHVGAAAPD  175 (227)
T ss_dssp             ----G-GGCSEEEEEECSCBSS
T ss_pred             ----C-cCCCccEEEECCchHH
Confidence                0 1258999999987754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.94  E-value=2.7e-09  Score=82.59  Aligned_cols=61  Identities=13%  Similarity=0.079  Sum_probs=50.2

Q ss_pred             eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHH
Q 030274           54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKK  114 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~  114 (180)
                      ++-.++..|...+....-..++.+|||+|||||.++..+++.+ .+|+++|.++.|++.+.+
T Consensus        65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred             cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            3556777888888776544578899999999999999998886 499999999999988543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.94  E-value=2.4e-09  Score=78.07  Aligned_cols=89  Identities=16%  Similarity=0.195  Sum_probs=61.4

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      .++..|.+.+.+..-..++.+|||||||+|.+++.+++.+.+|+++|+++..           .       ..++.+...
T Consensus         8 Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~-------~~~v~~~~~   69 (191)
T 3dou_A            8 RAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------E-------IAGVRFIRC   69 (191)
T ss_dssp             HHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------C-------CTTCEEEEC
T ss_pred             cHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------c-------CCCeEEEEc
Confidence            3566777766654434467899999999999999999988899999998741           0       124667777


Q ss_pred             ecCCCchhhHHHhhCC----CCCcEEEEccc
Q 030274          137 EWGNSDQINKIIQKYP----GGFDLILGADI  163 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~----~~fD~Ii~~d~  163 (180)
                      +..+......+.....    ++||+|+++..
T Consensus        70 D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~  100 (191)
T 3dou_A           70 DIFKETIFDDIDRALREEGIEKVDDVVSDAM  100 (191)
T ss_dssp             CTTSSSHHHHHHHHHHHHTCSSEEEEEECCC
T ss_pred             cccCHHHHHHHHHHhhcccCCcceEEecCCC
Confidence            7766542222211111    48999999764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.94  E-value=3.8e-09  Score=78.16  Aligned_cols=80  Identities=16%  Similarity=0.143  Sum_probs=59.4

Q ss_pred             CCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           75 ASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      +.+|||+|||+|..+..+++.    +++|.++.+++.++++    +          +.+...+.....       ...++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~----~----------~~~~~~d~~~~~-------~~~~~  102 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR----G----------VFVLKGTAENLP-------LKDES  102 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT----T----------CEEEECBTTBCC-------SCTTC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc----C----------CEEEEcccccCC-------CCCCC
Confidence            679999999999999888765    9999999999999887    2          335554443321       13468


Q ss_pred             CcEEEEcccccc-CCchhhHHHHHHh
Q 030274          155 FDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       155 fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ||+|+++.++++ .+...+++.+.+.
T Consensus       103 fD~v~~~~~l~~~~~~~~~l~~~~~~  128 (219)
T 1vlm_A          103 FDFALMVTTICFVDDPERALKEAYRI  128 (219)
T ss_dssp             EEEEEEESCGGGSSCHHHHHHHHHHH
T ss_pred             eeEEEEcchHhhccCHHHHHHHHHHH
Confidence            999999999877 4555566655543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.94  E-value=5.3e-09  Score=78.89  Aligned_cols=85  Identities=13%  Similarity=0.060  Sum_probs=58.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCC-CCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENP-NSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ++.+|||+|||+|..++.+++.+  .+|+++|+++.+++.+++|++.+...... ....++.+...+..+.  +...  .
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~--l~~~--~  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF--LPNF--F  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC--GGGT--S
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH--HHHh--c
Confidence            56799999999999999999875  58999999999999999999876211000 0013466666555432  1110  1


Q ss_pred             CCCCCcEEEEcc
Q 030274          151 YPGGFDLILGAD  162 (180)
Q Consensus       151 ~~~~fD~Ii~~d  162 (180)
                      ..+.+|.|+...
T Consensus       125 ~~~~~d~v~~~~  136 (246)
T 2vdv_E          125 EKGQLSKMFFCF  136 (246)
T ss_dssp             CTTCEEEEEEES
T ss_pred             cccccCEEEEEC
Confidence            346789888653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.93  E-value=5e-09  Score=86.49  Aligned_cols=93  Identities=17%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      +++..++..+.-.  ..++.+|||+|||+|..++.+|+.   ..+|+++|+++.+++.+++|++.++.       .++.+
T Consensus       102 ~~s~l~~~~L~~~--~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-------~nv~~  172 (479)
T 2frx_A          102 ASSMLPVAALFAD--GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-------SNVAL  172 (479)
T ss_dssp             HHHHHHHHHHTTT--TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-------CSEEE
T ss_pred             HHHHHHHHHhCcc--cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CcEEE
Confidence            3445555555422  125779999999999999998875   36999999999999999999999872       13444


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ...+...   +..   ...++||+|++++|+
T Consensus       173 ~~~D~~~---~~~---~~~~~fD~Il~D~Pc  197 (479)
T 2frx_A          173 THFDGRV---FGA---AVPEMFDAILLDAPC  197 (479)
T ss_dssp             ECCCSTT---HHH---HSTTCEEEEEEECCC
T ss_pred             EeCCHHH---hhh---hccccCCEEEECCCc
Confidence            4333322   211   135689999998765

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.91  E-value=9.8e-10  Score=82.58  Aligned_cols=62  Identities=16%  Similarity=0.107  Sum_probs=51.5

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHH
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~  116 (180)
                      +..++..|.+.|.......++++|||||||+|.++..+++.+ .+|+++|+++.|++.++++.
T Consensus        18 vsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           18 VSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             cCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            455677788877776555577899999999999999999887 49999999999999877653

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.91  E-value=6.6e-11  Score=89.53  Aligned_cols=87  Identities=11%  Similarity=0.222  Sum_probs=60.6

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++|+...         .++.+...++.+.+ 
T Consensus        19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~---------~~v~~~~~D~~~~~-   88 (245)
T 1yub_A           19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN---------TRVTLIHQDILQFQ-   88 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC---------SEEEECCSCCTTTT-
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccC---------CceEEEECChhhcC-
Confidence            33333333446779999999999999999998899999999999999988876521         23444444433321 


Q ss_pred             hhHHHhhC-CCCCcEEEEccccccC
Q 030274          144 INKIIQKY-PGGFDLILGADIYILY  167 (180)
Q Consensus       144 ~~~~~~~~-~~~fD~Ii~~d~~y~~  167 (180)
                            .. .++| .|++++|++..
T Consensus        89 ------~~~~~~f-~vv~n~Py~~~  106 (245)
T 1yub_A           89 ------FPNKQRY-KIVGNIPYHLS  106 (245)
T ss_dssp             ------CCCSSEE-EEEEECCSSSC
T ss_pred             ------cccCCCc-EEEEeCCcccc
Confidence                  01 2468 88898887653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.90  E-value=2.4e-09  Score=84.56  Aligned_cols=79  Identities=13%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHh--cCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHH--TSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +.++|||||||+|.++..+++.  ..+|+++|+++.+++.+++|+...  +.     ...++.+...++..     . ++
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-----~~~rv~~~~~D~~~-----~-l~  188 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-----EDPRVNLVIGDGVA-----F-LK  188 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-----GSTTEEEEESCHHH-----H-HH
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-----CCCcEEEEECCHHH-----H-HH
Confidence            5679999999999999999986  479999999999999999998753  21     01245555443321     1 12


Q ss_pred             h-CCCCCcEEEEccc
Q 030274          150 K-YPGGFDLILGADI  163 (180)
Q Consensus       150 ~-~~~~fD~Ii~~d~  163 (180)
                      . ..++||+|+++.+
T Consensus       189 ~~~~~~fDlIi~d~~  203 (334)
T 1xj5_A          189 NAAEGSYDAVIVDSS  203 (334)
T ss_dssp             TSCTTCEEEEEECCC
T ss_pred             hccCCCccEEEECCC
Confidence            1 2468999998654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.88  E-value=8.1e-09  Score=79.43  Aligned_cols=81  Identities=19%  Similarity=0.214  Sum_probs=57.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .+++|||||||+|..+..+++. + .+|+++|+++.+++.+++|+...+...   ...++.+...+   .  .. .++..
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~---~~~rv~v~~~D---~--~~-~l~~~  145 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL---DDPRVDVQVDD---G--FM-HIAKS  145 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT---TSTTEEEEESC---S--HH-HHHTC
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc---CCCceEEEECc---H--HH-HHhhC
Confidence            4679999999999999999886 4 799999999999999999986531000   12345554432   2  11 12223


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      .++||+|++..+
T Consensus       146 ~~~fD~Ii~d~~  157 (275)
T 1iy9_A          146 ENQYDVIMVDST  157 (275)
T ss_dssp             CSCEEEEEESCS
T ss_pred             CCCeeEEEECCC
Confidence            578999999654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.88  E-value=5.7e-09  Score=79.46  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=59.5

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ..+.+++.+... .++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.++++..            ++.+...+
T Consensus        72 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~~d  138 (269)
T 1p91_A           72 DAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------------QVTFCVAS  138 (269)
T ss_dssp             HHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------------TSEEEECC
T ss_pred             HHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC------------CcEEEEcc
Confidence            344445444221 25679999999999999998886  6899999999999999988741            23355555


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEccc
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~  163 (180)
                      +....       ...++||+|+++.+
T Consensus       139 ~~~~~-------~~~~~fD~v~~~~~  157 (269)
T 1p91_A          139 SHRLP-------FSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTSCS-------BCTTCEEEEEEESC
T ss_pred             hhhCC-------CCCCceeEEEEeCC
Confidence            44321       13468999998765

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.87  E-value=2.9e-09  Score=83.69  Aligned_cols=78  Identities=14%  Similarity=0.244  Sum_probs=56.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHh--cCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHH--TSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++|||||||+|.++..+++.  +.+|+++|+++.+++.+++|+...  +.     ...++++...++..      ..+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~-----~~~~v~~~~~D~~~------~l~  184 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY-----EDKRVNVFIEDASK------FLE  184 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG-----GSTTEEEEESCHHH------HHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-----CCCcEEEEEccHHH------HHh
Confidence            4579999999999999999886  479999999999999999997652  11     01245555433221      122


Q ss_pred             hCCCCCcEEEEcc
Q 030274          150 KYPGGFDLILGAD  162 (180)
Q Consensus       150 ~~~~~fD~Ii~~d  162 (180)
                      ...++||+|+++.
T Consensus       185 ~~~~~fDvIi~d~  197 (321)
T 2pt6_A          185 NVTNTYDVIIVDS  197 (321)
T ss_dssp             HCCSCEEEEEEEC
T ss_pred             hcCCCceEEEECC
Confidence            2356899999875

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.86  E-value=7e-09  Score=81.23  Aligned_cols=83  Identities=12%  Similarity=0.206  Sum_probs=57.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      .+++|||||||+|..+..+++.  +.+|+++|+++.+++.+++++...+...  ....++.+...+..      ..++..
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~--~~~~~v~~~~~D~~------~~l~~~  148 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA--FDDPRAVLVIDDAR------AYLERT  148 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG--GGCTTEEEEESCHH------HHHHHC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc--ccCCceEEEEchHH------HHHHhc
Confidence            4579999999999999999886  4799999999999999999986521000  00124554433221      112234


Q ss_pred             CCCCcEEEEcccc
Q 030274          152 PGGFDLILGADIY  164 (180)
Q Consensus       152 ~~~fD~Ii~~d~~  164 (180)
                      .++||+|+++.+.
T Consensus       149 ~~~fD~Ii~d~~~  161 (314)
T 1uir_A          149 EERYDVVIIDLTD  161 (314)
T ss_dssp             CCCEEEEEEECCC
T ss_pred             CCCccEEEECCCC
Confidence            6789999997654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.85  E-value=1.7e-09  Score=87.44  Aligned_cols=84  Identities=14%  Similarity=0.087  Sum_probs=59.9

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      ..+++++.+.....++.+|||+|||+|.+++.+++.   +.+|+++|+++.+++.|      .          ++.+...
T Consensus        25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~----------~~~~~~~   88 (421)
T 2ih2_A           25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------P----------WAEGILA   88 (421)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------T----------TEEEEES
T ss_pred             HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------C----------CCcEEeC
Confidence            445666655443335669999999999999998873   47999999999888776      1          2445554


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ++....        ..++||+|++|||+...
T Consensus        89 D~~~~~--------~~~~fD~Ii~NPPy~~~  111 (421)
T 2ih2_A           89 DFLLWE--------PGEAFDLILGNPPYGIV  111 (421)
T ss_dssp             CGGGCC--------CSSCEEEEEECCCCCCB
T ss_pred             ChhhcC--------ccCCCCEEEECcCccCc
Confidence            443321        23589999999998763

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.85  E-value=1.5e-08  Score=79.26  Aligned_cols=93  Identities=10%  Similarity=0.028  Sum_probs=66.4

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .++..++.++.    ..++.+|||+|||+|..++.++..   ..+|+++|+++.+++.+++|++.++.       .++.+
T Consensus        89 ~~s~l~~~~l~----~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-------~~v~~  157 (309)
T 2b9e_A           89 RASCLPAMLLD----PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-------SCCEL  157 (309)
T ss_dssp             TGGGHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-------CSEEE
T ss_pred             HHHHHHHHHhC----CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEE
Confidence            44555666553    236789999999999999988874   36999999999999999999999873       24556


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ...++.......   . ...+||.|++.+|+
T Consensus       158 ~~~D~~~~~~~~---~-~~~~fD~Vl~D~Pc  184 (309)
T 2b9e_A          158 AEEDFLAVSPSD---P-RYHEVHYILLDPSC  184 (309)
T ss_dssp             EECCGGGSCTTC---G-GGTTEEEEEECCCC
T ss_pred             EeCChHhcCccc---c-ccCCCCEEEEcCCc
Confidence            655544321100   0 01479999997765

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.83  E-value=7.4e-09  Score=80.73  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=56.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      ++++|||||||+|..+..+++.  ..+|+++|+++.+++.+++++...+..   ....++.+...+...      +... 
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~---~~~~~v~~~~~D~~~------~~~~~  165 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS---LADPRATVRVGDGLA------FVRQT  165 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEESCHHH------HHHSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc---cCCCcEEEEECcHHH------HHHhc
Confidence            5679999999999999998876  469999999999999999987531100   012245554433221      1111 


Q ss_pred             CCCCCcEEEEccccc
Q 030274          151 YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y  165 (180)
                      ..++||+|+++.+..
T Consensus       166 ~~~~fDvIi~d~~~~  180 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDP  180 (304)
T ss_dssp             CTTCEEEEEEECC--
T ss_pred             cCCceeEEEECCCCc
Confidence            356899999976543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.83  E-value=3.6e-09  Score=79.60  Aligned_cols=75  Identities=13%  Similarity=0.075  Sum_probs=53.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGILCSRF------CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ++.+|||||||+|..++.+++.      +.+|+++|+++.+++.++ +.           ..++.+...+......+.. 
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~~-----------~~~v~~~~gD~~~~~~l~~-  147 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-SD-----------MENITLHQGDCSDLTTFEH-  147 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-GG-----------CTTEEEEECCSSCSGGGGG-
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-cc-----------CCceEEEECcchhHHHHHh-
Confidence            4579999999999999999886      689999999999988877 11           1246676666554311111 


Q ss_pred             HhhCCCCCcEEEEccc
Q 030274          148 IQKYPGGFDLILGADI  163 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~  163 (180)
                        ....+||+|++...
T Consensus       148 --~~~~~fD~I~~d~~  161 (236)
T 2bm8_A          148 --LREMAHPLIFIDNA  161 (236)
T ss_dssp             --GSSSCSSEEEEESS
T ss_pred             --hccCCCCEEEECCc
Confidence              12237999997654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.82  E-value=8.7e-09  Score=80.38  Aligned_cols=79  Identities=18%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHH--hcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEH--HTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++|||||||+|..+..+++..  .+|+++|+++.+++.+++|+..  ++..     ..++++...   +.  .. .++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~-----~~rv~v~~~---Da--~~-~l~  163 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS-----SSKLTLHVG---DG--FE-FMK  163 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-----CTTEEEEES---CH--HH-HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC-----CCcEEEEEC---cH--HH-HHh
Confidence            56799999999999999999863  7999999999999999999875  2210     123444432   21  11 122


Q ss_pred             hCCCCCcEEEEccc
Q 030274          150 KYPGGFDLILGADI  163 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~  163 (180)
                      ...++||+|++..+
T Consensus       164 ~~~~~fD~Ii~d~~  177 (304)
T 2o07_A          164 QNQDAFDVIITDSS  177 (304)
T ss_dssp             TCSSCEEEEEEECC
T ss_pred             hCCCCceEEEECCC
Confidence            34578999998654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.82  E-value=6.3e-09  Score=85.16  Aligned_cols=92  Identities=10%  Similarity=0.047  Sum_probs=63.7

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---------------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---------------CREVLLTDHNEEVLKILKKNIEHHTSSENPN  126 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---------------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~  126 (180)
                      +++++.+.....++.+|||.|||+|.+.+.+++.               ..+++|+|+++.+++.|+.|+..++...   
T Consensus       159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~---  235 (445)
T 2okc_A          159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT---  235 (445)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS---
T ss_pred             HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc---
Confidence            4444444333345679999999999988887753               3689999999999999999999886320   


Q ss_pred             CCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          127 SDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                        .++.+...+....+        ...+||+|++|||+..
T Consensus       236 --~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~  265 (445)
T 2okc_A          236 --DRSPIVCEDSLEKE--------PSTLVDVILANPPFGT  265 (445)
T ss_dssp             --SCCSEEECCTTTSC--------CSSCEEEEEECCCSSC
T ss_pred             --CCCCEeeCCCCCCc--------ccCCcCEEEECCCCCC
Confidence              01223333332221        2348999999999765

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.80  E-value=8.2e-09  Score=80.19  Aligned_cols=79  Identities=16%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHH--hcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEH--HTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+.+|||||||+|..+..+++.  ..+|+++|+++.+++.+++|+..  ++.     ...++.+...+...      .++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~-----~~~~v~~~~~D~~~------~l~  158 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-----DDPRAEIVIANGAE------YVR  158 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-----GCTTEEEEESCHHH------HGG
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-----CCCceEEEECcHHH------HHh
Confidence            4579999999999999999886  37999999999999999999865  221     01245554433211      112


Q ss_pred             hCCCCCcEEEEccc
Q 030274          150 KYPGGFDLILGADI  163 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~  163 (180)
                      ...++||+|+++.+
T Consensus       159 ~~~~~fD~Ii~d~~  172 (296)
T 1inl_A          159 KFKNEFDVIIIDST  172 (296)
T ss_dssp             GCSSCEEEEEEEC-
T ss_pred             hCCCCceEEEEcCC
Confidence            23568999998643

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.80  E-value=7.5e-09  Score=79.81  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCC----CCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSE----NPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++|||||||+|..+..+++.+ .+|+++|+++.+++.+++|+ ..+...    ......++.+...   +  .... +
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~---D--~~~~-l  147 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIG---D--GFEF-I  147 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEES---C--HHHH-H
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEEC---c--hHHH-h
Confidence            46799999999999999988874 59999999999999999998 321000    0001224444432   2  1221 2


Q ss_pred             hhCCCCCcEEEEcccc
Q 030274          149 QKYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~  164 (180)
                      .. .++||+|++..+.
T Consensus       148 ~~-~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          148 KN-NRGFDVIIADSTD  162 (281)
T ss_dssp             HH-CCCEEEEEEECCC
T ss_pred             cc-cCCeeEEEECCCC
Confidence            22 5689999987653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.79  E-value=6.6e-09  Score=81.40  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=56.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHh--cCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHH--TSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++|||||||+|..+..+++.  ..+|+++|+++.+++.+++|+...  +.     ...++.+..   ++.  ... ++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~-----~~~rv~~~~---~D~--~~~-l~  176 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-----SHPKLDLFC---GDG--FEF-LK  176 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG-----GCTTEEEEC---SCH--HHH-HH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc-----CCCCEEEEE---ChH--HHH-HH
Confidence            4579999999999999999886  479999999999999999997653  10     012344432   222  221 22


Q ss_pred             hCCCCCcEEEEccc
Q 030274          150 KYPGGFDLILGADI  163 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~  163 (180)
                      ...++||+|+++.+
T Consensus       177 ~~~~~fD~Ii~d~~  190 (314)
T 2b2c_A          177 NHKNEFDVIITDSS  190 (314)
T ss_dssp             HCTTCEEEEEECCC
T ss_pred             hcCCCceEEEEcCC
Confidence            24578999998653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.78  E-value=4.7e-08  Score=80.13  Aligned_cols=92  Identities=10%  Similarity=0.003  Sum_probs=64.8

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .++..++..+.    ..++.+|||+|||+|..++.+++.  + .+|+++|.++.+++.+++|++.++.       .++.+
T Consensus       246 ~~s~l~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-------~~v~~  314 (450)
T 2yxl_A          246 EASAVASIVLD----PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-------KIVKP  314 (450)
T ss_dssp             HHHHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-------CSEEE
T ss_pred             chhHHHHHhcC----CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-------CcEEE
Confidence            34455555553    236779999999999999988874  3 6999999999999999999999862       23555


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ...+......  .   ...++||+|++.+|+
T Consensus       315 ~~~D~~~~~~--~---~~~~~fD~Vl~D~Pc  340 (450)
T 2yxl_A          315 LVKDARKAPE--I---IGEEVADKVLLDAPC  340 (450)
T ss_dssp             ECSCTTCCSS--S---SCSSCEEEEEEECCC
T ss_pred             EEcChhhcch--h---hccCCCCEEEEcCCC
Confidence            5444433210  0   012579999987665

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.78  E-value=2.9e-08  Score=80.89  Aligned_cols=92  Identities=17%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      .++..++..+..    .++.+|||+|||+|..++.+++..  .+|+++|.++.+++.+++|++.++.        ++.+.
T Consensus       233 ~~s~~~~~~l~~----~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--------~~~~~  300 (429)
T 1sqg_A          233 ASAQGCMTWLAP----QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--------KATVK  300 (429)
T ss_dssp             HHHHTHHHHHCC----CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--------CCEEE
T ss_pred             HHHHHHHHHcCC----CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--------CeEEE
Confidence            344555555532    367799999999999999998864  6999999999999999999999862        23445


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      ..+.....   ..  ...++||+|++++|+.
T Consensus       301 ~~D~~~~~---~~--~~~~~fD~Vl~D~Pcs  326 (429)
T 1sqg_A          301 QGDGRYPS---QW--CGEQQFDRILLDAPCS  326 (429)
T ss_dssp             ECCTTCTH---HH--HTTCCEEEEEEECCCC
T ss_pred             eCchhhch---hh--cccCCCCEEEEeCCCC
Confidence            44444321   11  1246899999987653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.77  E-value=1.3e-08  Score=78.60  Aligned_cols=80  Identities=15%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++++|||||||+|..+..+++.  ..+|+++|+++.+++.+++++..++..   ....++.+...+..      ...+..
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~---~~~~~v~~~~~D~~------~~l~~~  148 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG---YEDKRVNVFIEDAS------KFLENV  148 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG---GGSTTEEEEESCHH------HHHHHC
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc---cCCCcEEEEECChH------HHHHhC
Confidence            5579999999999999999886  479999999999999999987653200   00124555433221      112223


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      .++||+|++..
T Consensus       149 ~~~fD~Ii~d~  159 (283)
T 2i7c_A          149 TNTYDVIIVDS  159 (283)
T ss_dssp             CSCEEEEEEEC
T ss_pred             CCCceEEEEcC
Confidence            67899999854

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.73  E-value=8.7e-09  Score=76.96  Aligned_cols=47  Identities=17%  Similarity=0.058  Sum_probs=38.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhh--cCCeEEEecCC-HHHHHHH---HHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSR--FCREVLLTDHN-EEVLKIL---KKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~-~~~l~~~---~~n~~~n~  120 (180)
                      ++.+|||||||+|..++.+++  .+.+|+++|+| +.+++.|   ++++..++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~   76 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG   76 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence            567999999999999999984  46799999999 6677666   77766654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.71  E-value=6.3e-09  Score=81.43  Aligned_cols=76  Identities=11%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             CCeEEEeCCcCChHHHHHhh-c-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           75 ASSILELGSGVGVTGILCSR-F-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~-~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ..+|||||||+|.++..+++ . +.+|+++|+++.+++.+++++..+.       ..++++...   +.  ...+.....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-------~~rv~v~~~---Da--~~~l~~~~~  157 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-------APRVKIRVD---DA--RMVAESFTP  157 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-------TTTEEEEES---CH--HHHHHTCCT
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-------CCceEEEEC---cH--HHHHhhccC
Confidence            34999999999999999888 3 6799999999999999999875431       234544432   22  111111134


Q ss_pred             CCCcEEEEcc
Q 030274          153 GGFDLILGAD  162 (180)
Q Consensus       153 ~~fD~Ii~~d  162 (180)
                      ++||+|++.-
T Consensus       158 ~~fDvIi~D~  167 (317)
T 3gjy_A          158 ASRDVIIRDV  167 (317)
T ss_dssp             TCEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            6899999853

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.71  E-value=2.2e-08  Score=73.86  Aligned_cols=64  Identities=14%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+.+++..+...   ....++.+...+..+
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~---~~~~~v~~~~~d~~~   92 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK---GGLPNLLYLWATAER   92 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG---TCCTTEEEEECCSTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh---cCCCceEEEecchhh
Confidence            5679999999999999999987  689999999999888654444332100   012256666665554

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.70  E-value=6.6e-08  Score=70.23  Aligned_cols=49  Identities=14%  Similarity=0.042  Sum_probs=37.7

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCH
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF----CREVLLTDHNE  106 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~  106 (180)
                      ++..|.+.+.+.....++.+|||||||+|.+++.+++.    +.+|+++|+++
T Consensus         6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A            6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            45566665554333346779999999999999999875    36999999998

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.69  E-value=3.4e-08  Score=72.57  Aligned_cols=73  Identities=10%  Similarity=-0.055  Sum_probs=51.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||+|||+|..+..++   .+|+++|.++.           +           +.+...+.....       ...+
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~-----------~-----------~~~~~~d~~~~~-------~~~~  114 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR---NPVHCFDLASL-----------D-----------PRVTVCDMAQVP-------LEDE  114 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC---SCEEEEESSCS-----------S-----------TTEEESCTTSCS-------CCTT
T ss_pred             CCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC-----------C-----------ceEEEeccccCC-------CCCC
Confidence            56799999999999888774   78999999987           1           114444444321       1346


Q ss_pred             CCcEEEEccccccCCchhhHHHHHH
Q 030274          154 GFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      +||+|+++.++++.+...++..+.+
T Consensus       115 ~fD~v~~~~~l~~~~~~~~l~~~~~  139 (215)
T 2zfu_A          115 SVDVAVFCLSLMGTNIRDFLEEANR  139 (215)
T ss_dssp             CEEEEEEESCCCSSCHHHHHHHHHH
T ss_pred             CEeEEEEehhccccCHHHHHHHHHH
Confidence            8999999999876555555555544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.68  E-value=6.9e-08  Score=69.79  Aligned_cols=49  Identities=14%  Similarity=0.055  Sum_probs=37.2

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C----------CeEEEecCCHH
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C----------REVLLTDHNEE  107 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~----------~~V~~~D~~~~  107 (180)
                      +..|.+...+.....++.+|||+|||+|.+++.+++. +          .+|+++|+++.
T Consensus         7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A            7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            4455555444333446789999999999999999886 3          78999999973

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.64  E-value=2.9e-07  Score=73.07  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .......+|+|+|||+|..++.+++.  ..+++..|. +.+++.+++++...+       ..++++...++...      
T Consensus       175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-------~~rv~~~~gD~~~~------  240 (353)
T 4a6d_A          175 FDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-------EEQIDFQEGDFFKD------  240 (353)
T ss_dssp             SCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---------CCSEEEEESCTTTS------
T ss_pred             cCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-------cCceeeecCccccC------
Confidence            33445679999999999999998876  468899998 789999998875443       34677887776543      


Q ss_pred             HhhCCCCCcEEEEccccccCCc---hhhHHHHHHhC
Q 030274          148 IQKYPGGFDLILGADIYILYNR---SLLMTSFFQAI  180 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~al  180 (180)
                         ....+|+|++..++++-..   ..+++.+.++|
T Consensus       241 ---~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al  273 (353)
T 4a6d_A          241 ---PLPEADLYILARVLHDWADGKCSHLLERIYHTC  273 (353)
T ss_dssp             ---CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCceEEEeeeecccCCHHHHHHHHHHHHhhC
Confidence               2346899999999987433   34566666554

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.64  E-value=1.7e-07  Score=78.47  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             cCceecchH--HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-----CCeEEEecCCHHHHHHHHHHHHHhcCCC
Q 030274           51 TGQLVWPGA--MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-----CREVLLTDHNEEVLKILKKNIEHHTSSE  123 (180)
Q Consensus        51 ~g~~~w~~~--~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-----~~~V~~~D~~~~~l~~~~~n~~~n~~~~  123 (180)
                      .|...-|..  ..|++.+.......++.+|+|.+||+|.+.+.+++.     ..+++|+|+++.+...|+.|+..++.. 
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-  274 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP-  274 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC-
Confidence            355444544  455555543322236779999999999887776654     468999999999999999999988731 


Q ss_pred             CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          124 NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                          ..++.+...+....+. .   .....+||+||+|||+-.
T Consensus       275 ----~~~~~I~~gDtL~~d~-p---~~~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          275 ----IENQFLHNADTLDEDW-P---TQEPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             ----GGGEEEEESCTTTSCS-C---CSSCCCBSEEEECCCTTC
T ss_pred             ----cCccceEecceecccc-c---ccccccccEEEecCCcCC
Confidence                0123344333222210 0   012468999999999853

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.61  E-value=4e-08  Score=82.30  Aligned_cols=106  Identities=14%  Similarity=0.087  Sum_probs=64.8

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--------------------CCeEEEecCCHHHHH
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--------------------CREVLLTDHNEEVLK  110 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--------------------~~~V~~~D~~~~~l~  110 (180)
                      .|...-|..  +++++.+.....++.+|||.+||+|.+.+.+++.                    ..+++|+|+++.++.
T Consensus       148 ~G~fyTP~~--iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~  225 (541)
T 2ar0_A          148 AGQYFTPRP--LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  225 (541)
T ss_dssp             --CCCCCHH--HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             CCeeeCCHH--HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence            355555544  3333333222335679999999999888877653                    137999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          111 ILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       111 ~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      .|+.|+..++.....  ..++.+..   ++.  +... .....+||+|++|||+-.
T Consensus       226 lA~~nl~l~gi~~~~--~~~~~I~~---gDt--L~~~-~~~~~~fD~Vv~NPPf~~  273 (541)
T 2ar0_A          226 LALMNCLLHDIEGNL--DHGGAIRL---GNT--LGSD-GENLPKAHIVATNPPFGS  273 (541)
T ss_dssp             HHHHHHHTTTCCCBG--GGTBSEEE---SCT--TSHH-HHTSCCEEEEEECCCCTT
T ss_pred             HHHHHHHHhCCCccc--cccCCeEe---CCC--cccc-cccccCCeEEEECCCccc
Confidence            999999887632100  00022222   222  2111 113468999999999754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.61  E-value=6.7e-08  Score=76.51  Aligned_cols=90  Identities=14%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++.+|||+|||+|..+..+++.  +.+++++|. +.++.  ++++...+      ...++.+...++...        
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~------~~~~v~~~~~d~~~~--------  244 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD------VAGRWKVVEGDFLRE--------  244 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG------GTTSEEEEECCTTTC--------
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC------CCCCeEEEecCCCCC--------
Confidence            345679999999999999988875  458999999 45544  33222222      123577777666521        


Q ss_pred             hCCCCCcEEEEccccccCCch---hhHHHHHHhC
Q 030274          150 KYPGGFDLILGADIYILYNRS---LLMTSFFQAI  180 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~al  180 (180)
                       .+ +||+|+++.++++-...   .+++.+.++|
T Consensus       245 -~p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L  276 (348)
T 3lst_A          245 -VP-HADVHVLKRILHNWGDEDSVRILTNCRRVM  276 (348)
T ss_dssp             -CC-CCSEEEEESCGGGSCHHHHHHHHHHHHHTC
T ss_pred             -CC-CCcEEEEehhccCCCHHHHHHHHHHHHHhc
Confidence             23 89999999999774333   5566555543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.59  E-value=5.1e-09  Score=80.61  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=39.0

Q ss_pred             eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274           54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE  106 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~  106 (180)
                      ..-.++..|.+.+.+ ....++.+|||||||+|.++..+++. .+|+++|+++
T Consensus        63 ~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~  113 (276)
T 2wa2_A           63 AVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT  113 (276)
T ss_dssp             --CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC
T ss_pred             cCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch
Confidence            344456666665554 33346789999999999999999988 7999999987

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.59  E-value=6.7e-09  Score=79.49  Aligned_cols=51  Identities=16%  Similarity=0.093  Sum_probs=40.7

Q ss_pred             eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274           54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE  106 (180)
Q Consensus        54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~  106 (180)
                      .+-.++..|.+.+.+ ....++.+|||||||+|.++..+++. .+|+++|+++
T Consensus        55 ~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~  105 (265)
T 2oxt_A           55 SVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT  105 (265)
T ss_dssp             CSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC
T ss_pred             ccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch
Confidence            345566777776665 33346789999999999999999988 7999999987

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.55  E-value=9.3e-08  Score=75.74  Aligned_cols=82  Identities=20%  Similarity=0.252  Sum_probs=58.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +..+|||+|||+|..+..+++.  +.+|+++|. +.+++.+++.             .++.+...+....         .
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~---------~  244 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------------NNLTYVGGDMFTS---------I  244 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------------TTEEEEECCTTTC---------C
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------------CCcEEEeccccCC---------C
Confidence            4579999999999999988875  569999999 8888877641             1255666655431         1


Q ss_pred             CCCCcEEEEccccccC-Cch--hhHHHHHHh
Q 030274          152 PGGFDLILGADIYILY-NRS--LLMTSFFQA  179 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~-~~~--~l~~~~~~a  179 (180)
                      + .||+|+++.++++- +..  .+++.+.++
T Consensus       245 p-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~  274 (352)
T 1fp2_A          245 P-NADAVLLKYILHNWTDKDCLRILKKCKEA  274 (352)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             C-CccEEEeehhhccCCHHHHHHHHHHHHHh
Confidence            2 49999999998873 333  455554443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.52  E-value=2.3e-07  Score=78.73  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             CCCCCCeEEEeCCcCChHHHH---Hhhc-CC--eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           71 DVLQASSILELGSGVGVTGIL---CSRF-CR--EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~---la~~-~~--~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ...+...|||+|||+|.++..   +++. +.  +|+++|.++ +...++++++.|+      ...++++.+-+..+.+  
T Consensus       354 ~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~------~~dkVtVI~gd~eev~--  424 (637)
T 4gqb_A          354 KDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE------WGSQVTVVSSDMREWV--  424 (637)
T ss_dssp             TTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT------TGGGEEEEESCTTTCC--
T ss_pred             ccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc------CCCeEEEEeCcceecc--
Confidence            334556899999999988444   3333 22  789999997 6667888888887      3467888887766653  


Q ss_pred             hHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          145 NKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                            .+.++|+||+--+-|.-..+..+.++
T Consensus       425 ------LPEKVDIIVSEwMG~fLl~E~mlevL  450 (637)
T 4gqb_A          425 ------APEKADIIVSELLGSFADNELSPECL  450 (637)
T ss_dssp             ------CSSCEEEEECCCCBTTBGGGCHHHHH
T ss_pred             ------CCcccCEEEEEcCcccccccCCHHHH
Confidence                  36799999999886663333334443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.51  E-value=1.6e-07  Score=81.17  Aligned_cols=84  Identities=11%  Similarity=0.088  Sum_probs=55.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-----CeEEEecCCHHHHHHH--HHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           74 QASSILELGSGVGVTGILCSRFC-----REVLLTDHNEEVLKIL--KKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-----~~V~~~D~~~~~l~~~--~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ++.+|||.|||+|.+.+.+++..     .+++|+|+++.+++.|  +.|+..|......   ....+..-++...+    
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi---~~~~I~~dD~L~~~----  393 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN---NAPTITGEDVCSLN----  393 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT---BCCEEECCCGGGCC----
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC---CcceEEecchhccc----
Confidence            57799999999999999888653     4799999999999999  7776664321100   01112211111100    


Q ss_pred             HHhhCCCCCcEEEEcccccc
Q 030274          147 IIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d~~y~  166 (180)
                        .....+||+||+|||+..
T Consensus       394 --~~~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          394 --PEDFANVSVVVMNPPYVS  411 (878)
T ss_dssp             --GGGGTTEEEEEECCBCCS
T ss_pred             --ccccCCCCEEEECCCccc
Confidence              012458999999999844

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.50  E-value=8.7e-07  Score=64.97  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      +.++|||+||  |+.++++|+. +.+|+.+|.+++..+.+++|++.++
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g   75 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANP   75 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            4569999998  5789999986 6899999999999999999999986

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.49  E-value=3.1e-07  Score=73.31  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+..+|||+|||+|..+..+++..  .+++++|. +.+++.+++.             .++.+...++...        
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~--------  264 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------------SGIEHVGGDMFAS--------  264 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------------TTEEEEECCTTTC--------
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------------CCCEEEeCCcccC--------
Confidence            3456799999999999999988764  58899999 8888776541             1366666665541        


Q ss_pred             hCCCCCcEEEEccccccCC-ch--hhHHHHHHh
Q 030274          150 KYPGGFDLILGADIYILYN-RS--LLMTSFFQA  179 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~-~~--~l~~~~~~a  179 (180)
                       .+ .||+|+++.++++-. ..  .+++.+.++
T Consensus       265 -~~-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~  295 (372)
T 1fp1_D          265 -VP-QGDAMILKAVCHNWSDEKCIEFLSNCHKA  295 (372)
T ss_dssp             -CC-CEEEEEEESSGGGSCHHHHHHHHHHHHHH
T ss_pred             -CC-CCCEEEEecccccCCHHHHHHHHHHHHHh
Confidence             12 399999999988743 33  455555443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.48  E-value=2.5e-07  Score=71.81  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=48.9

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..|.+.+.+... .++..|||++||+|..++.+++.|.+++++|+++.+++.+++|+...
T Consensus       222 ~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          222 LELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            344454444322 36789999999999999999999999999999999999999999775

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.47  E-value=9e-08  Score=73.10  Aligned_cols=44  Identities=7%  Similarity=0.006  Sum_probs=38.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      .+++|||||||+|..+..+++.+.+|+++|+++.+++.+++++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~  115 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFP  115 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTST
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH
Confidence            45799999999999988777656799999999999999998764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.47  E-value=1.4e-07  Score=78.96  Aligned_cols=78  Identities=14%  Similarity=0.091  Sum_probs=54.2

Q ss_pred             eEEEeCCcCChHHHHHhhc-----------------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           77 SILELGSGVGVTGILCSRF-----------------CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la~~-----------------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      +|||.+||+|.+.+.+++.                 ..+++|+|+++.++..|+.|+..++...           .+.+.
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~-----------~i~i~  315 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF-----------NFGKK  315 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC-----------BCCSS
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccee
Confidence            9999999999877766432                 3579999999999999999999987321           12112


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..+.+... .....+||+||+|||+-.
T Consensus       316 ~gDtL~~~-~~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          316 NADSFLDD-QHPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             SCCTTTSC-SCTTCCEEEEEECCCSSC
T ss_pred             ccchhcCc-ccccccccEEEECCCcCC
Confidence            22222110 012468999999999854

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.46  E-value=1.2e-07  Score=65.63  Aligned_cols=49  Identities=14%  Similarity=0.140  Sum_probs=41.1

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCC-hHHHHHhh-cCCeEEEecCCHHHHH
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVG-VTGILCSR-FCREVLLTDHNEEVLK  110 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G-~~~l~la~-~~~~V~~~D~~~~~l~  110 (180)
                      +.|++|+.+...  .+.+|||+|||.| ..+..+++ .|..|++||+++.+++
T Consensus        23 e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           23 NDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             HHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            568888877653  4569999999999 49999997 8999999999987665

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.43  E-value=9.1e-07  Score=70.58  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=59.9

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+..+|||+|||+|..+..+++.  +.+++++|. +.+++.++++             .++.+...++.+.        
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~--------  258 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------------SGVEHLGGDMFDG--------  258 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------------TTEEEEECCTTTC--------
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------------CCCEEEecCCCCC--------
Confidence            345679999999999999998875  568999999 8888766532             2466776666542        


Q ss_pred             hCCCCCcEEEEccccccCCch---hhHHHHHHhC
Q 030274          150 KYPGGFDLILGADIYILYNRS---LLMTSFFQAI  180 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~al  180 (180)
                       .+.. |+|+++.++++-...   .+++.+.++|
T Consensus       259 -~p~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L  290 (368)
T 3reo_A          259 -VPKG-DAIFIKWICHDWSDEHCLKLLKNCYAAL  290 (368)
T ss_dssp             -CCCC-SEEEEESCGGGBCHHHHHHHHHHHHHHS
T ss_pred             -CCCC-CEEEEechhhcCCHHHHHHHHHHHHHHc
Confidence             1223 999999998763332   4555555543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.40  E-value=8.4e-08  Score=74.82  Aligned_cols=48  Identities=19%  Similarity=0.319  Sum_probs=37.6

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecC
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDH  104 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~  104 (180)
                      .-.++..|.+.+.+ ....++.+|||||||+|.++..+++. .+|+++|.
T Consensus        64 ~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~  111 (305)
T 2p41_A           64 VSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKG  111 (305)
T ss_dssp             SSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEE
T ss_pred             cccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEec
Confidence            44466677666655 33345789999999999999999988 68999998

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.36  E-value=1.3e-06  Score=67.01  Aligned_cols=97  Identities=11%  Similarity=0.178  Sum_probs=60.6

Q ss_pred             CeEEEeCCcC---ChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           76 SSILELGSGV---GVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        76 ~~vLdlG~G~---G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .+|||||||+   |.....+.+  .+++|+++|.|+.|++.++.++..+.       ..++.+...+..+.+.+... +.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-------~~~~~~v~aD~~~~~~~l~~-~~  151 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-------EGRTAYVEADMLDPASILDA-PE  151 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-------SSEEEEEECCTTCHHHHHTC-HH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-------CCcEEEEEecccChhhhhcc-cc
Confidence            5899999997   333333333  25899999999999999998876432       23466777776654211000 00


Q ss_pred             CCCCCc-----EEEEcccccc-CCc---hhhHHHHHHhC
Q 030274          151 YPGGFD-----LILGADIYIL-YNR---SLLMTSFFQAI  180 (180)
Q Consensus       151 ~~~~fD-----~Ii~~d~~y~-~~~---~~l~~~~~~al  180 (180)
                      ....||     .|+++-++++ .+.   ..++..+.++|
T Consensus       152 ~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L  190 (277)
T 3giw_A          152 LRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPL  190 (277)
T ss_dssp             HHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTS
T ss_pred             cccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhC
Confidence            012344     6888888887 332   35677766553

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.35  E-value=5.9e-07  Score=71.24  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +..+|||+|||+|..+..+++.  +.+++++|. +.+++.+++.             .++.+...++...         .
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~---------~  249 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-------------ENLNFVGGDMFKS---------I  249 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-------------SSEEEEECCTTTC---------C
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-------------CCcEEEeCccCCC---------C
Confidence            4579999999999999998876  468999999 7777665531             1366666655541         1


Q ss_pred             CCCCcEEEEcccccc-CCch--hhHHHHHHh
Q 030274          152 PGGFDLILGADIYIL-YNRS--LLMTSFFQA  179 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~--~l~~~~~~a  179 (180)
                      + +||+|+++.++++ .+..  .+++.+.++
T Consensus       250 ~-~~D~v~~~~vlh~~~d~~~~~~l~~~~~~  279 (358)
T 1zg3_A          250 P-SADAVLLKWVLHDWNDEQSLKILKNSKEA  279 (358)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             C-CceEEEEcccccCCCHHHHHHHHHHHHHh
Confidence            2 5999999999887 3333  555555554

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.31  E-value=2.6e-06  Score=67.83  Aligned_cols=85  Identities=19%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+..+|||+|||+|..+..+++.  +.+++++|. +.+++.++++             .++.+...++...        
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~~--------  256 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------------PGVTHVGGDMFKE--------  256 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------------TTEEEEECCTTTC--------
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------------CCeEEEeCCcCCC--------
Confidence            345679999999999999988874  568999999 8887766532             2466777766542        


Q ss_pred             hCCCCCcEEEEccccccCCc---hhhHHHHHHhC
Q 030274          150 KYPGGFDLILGADIYILYNR---SLLMTSFFQAI  180 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~al  180 (180)
                       .+.. |+|+++.++++-..   ..+++.+.++|
T Consensus       257 -~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L  288 (364)
T 3p9c_A          257 -VPSG-DTILMKWILHDWSDQHCATLLKNCYDAL  288 (364)
T ss_dssp             -CCCC-SEEEEESCGGGSCHHHHHHHHHHHHHHS
T ss_pred             -CCCC-CEEEehHHhccCCHHHHHHHHHHHHHHc
Confidence             1223 99999999976332   24555555543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.27  E-value=1.3e-06  Score=70.33  Aligned_cols=75  Identities=16%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             CCCeEEEeCCc------CChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           74 QASSILELGSG------VGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        74 ~~~~vLdlG~G------~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      ++.+|||||||      +|..++.+++.   +++|+++|+++.+.        ..        ..++.+...+..+.+-.
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~--------~~rI~fv~GDa~dlpf~  279 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD--------ELRIRTIQGDQNDAEFL  279 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC--------BTTEEEEECCTTCHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc--------CCCcEEEEecccccchh
Confidence            56799999999      77777766653   57999999999862        11        12466666555543211


Q ss_pred             hHHHhhCCCCCcEEEEccccc
Q 030274          145 NKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      ..+ ....++||+|+++-..+
T Consensus       280 ~~l-~~~d~sFDlVisdgsH~  299 (419)
T 3sso_A          280 DRI-ARRYGPFDIVIDDGSHI  299 (419)
T ss_dssp             HHH-HHHHCCEEEEEECSCCC
T ss_pred             hhh-hcccCCccEEEECCccc
Confidence            111 11136899999865433

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.27  E-value=1.4e-06  Score=72.79  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---------------CCeEEEecCCHHHHHHHHHH
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---------------CREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---------------~~~V~~~D~~~~~l~~~~~n  115 (180)
                      .|...-|..  +++++.+......+.+|+|-+||+|.+-+.+.+.               ...++|.|+++.+...|+-|
T Consensus       196 ~GqfyTP~~--Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN  273 (530)
T 3ufb_A          196 SGEFYTPRP--VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN  273 (530)
T ss_dssp             CCCCCCCHH--HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred             CceECCcHH--HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence            355444443  3444444333346679999999999877665432               24699999999999999999


Q ss_pred             HHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          116 IEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       116 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      +-..+..          ..++.+++.-...........+||+||+|||+-
T Consensus       274 l~lhg~~----------~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~  313 (530)
T 3ufb_A          274 LLLHGLE----------YPRIDPENSLRFPLREMGDKDRVDVILTNPPFG  313 (530)
T ss_dssp             HHHHTCS----------CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSS
T ss_pred             HHhcCCc----------cccccccccccCchhhhcccccceEEEecCCCC
Confidence            9988732          123444443211000001134799999999983

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.22  E-value=2.1e-06  Score=65.26  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ..|.+.+.+... .++..|||.+||+|..++++.+.|.+++++|+++..++.+++|++.++
T Consensus       199 ~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            445554443322 367899999999999999999999999999999999999999998775

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.08  E-value=5.8e-06  Score=70.56  Aligned_cols=84  Identities=17%  Similarity=0.118  Sum_probs=54.6

Q ss_pred             CCeEEEeCCcCChHHH---HHhhc-C-----------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           75 ASSILELGSGVGVTGI---LCSRF-C-----------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l---~la~~-~-----------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      ++.|||+|||+|.++.   .+++. +           .+|+++|.++.++..++.... |+      ...++.+.+-+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng------~~d~VtVI~gd~e  482 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT------WKRRVTIIESDMR  482 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT------TTTCSEEEESCGG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC------CCCeEEEEeCchh
Confidence            4689999999999864   33321 2           399999999977766665544 65      2345667665544


Q ss_pred             CCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      +....  .....+.+.|+||+--+-|.-
T Consensus       483 ev~lp--~~~~~~ekVDIIVSElmGsfl  508 (745)
T 3ua3_A          483 SLPGI--AKDRGFEQPDIIVSELLGSFG  508 (745)
T ss_dssp             GHHHH--HHHTTCCCCSEEEECCCBTTB
T ss_pred             hcccc--cccCCCCcccEEEEecccccc
Confidence            32110  001225799999999987664

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.06  E-value=8.8e-06  Score=62.35  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=56.4

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-C
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-Y  151 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  151 (180)
                      .++..+||.+||.|.-+..+++.+.+|+++|.++.+++.+++ ++.          .++.+.+-++.+.   ...+.. .
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----------~rv~lv~~~f~~l---~~~L~~~g   86 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----------PGLTVVQGNFRHL---KRHLAALG   86 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----------TTEEEEESCGGGH---HHHHHHTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----------CCEEEEECCcchH---HHHHHHcC
Confidence            367799999999999999888877899999999999999987 533          1466666655543   332222 2


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      ..++|.|++.-
T Consensus        87 ~~~vDgIL~DL   97 (285)
T 1wg8_A           87 VERVDGILADL   97 (285)
T ss_dssp             CSCEEEEEEEC
T ss_pred             CCCcCEEEeCC
Confidence            35799998754

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.02  E-value=1.5e-06  Score=66.65  Aligned_cols=91  Identities=16%  Similarity=0.057  Sum_probs=64.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh--hC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ--KY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  151 (180)
                      .+..+||+.+|||.+|+.+.+.+.+++++|.++..++.+++|++..         .++.+.+.     |....+..  ..
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~---------~~~~V~~~-----D~~~~L~~l~~~  156 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN---------KKVYVNHT-----DGVSKLNALLPP  156 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT---------SCEEEECS-----CHHHHHHHHCSC
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC---------CcEEEEeC-----cHHHHHHHhcCC
Confidence            4567999999999999998887789999999999999999998652         23444432     22222221  22


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ..+||+|+..||+-. .....+++.+.+
T Consensus       157 ~~~fdLVfiDPPYe~k~~~~~vl~~L~~  184 (283)
T 2oo3_A          157 PEKRGLIFIDPSYERKEEYKEIPYAIKN  184 (283)
T ss_dssp             TTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred             CCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence            347999999998864 444555555443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.92  E-value=7.3e-06  Score=58.14  Aligned_cols=79  Identities=8%  Similarity=-0.006  Sum_probs=52.3

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++.+|||+|||.              +.+|.++.|++.++++...+           +.+...+..+..   . ....
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~~-----------~~~~~~d~~~~~---~-~~~~   60 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGNE-----------GRVSVENIKQLL---Q-SAHK   60 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTTT-----------SEEEEEEGGGGG---G-GCCC
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcccC-----------cEEEEechhcCc---c-ccCC
Confidence            34778999999996              23999999999999875322           445555544321   0 0013


Q ss_pred             CCCCcEEEEcccccc--CCchhhHHHHHHh
Q 030274          152 PGGFDLILGADIYIL--YNRSLLMTSFFQA  179 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~--~~~~~l~~~~~~a  179 (180)
                      .++||+|+++.++++  .+...+++.+.+.
T Consensus        61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~   90 (176)
T 2ld4_A           61 ESSFDIILSGLVPGSTTLHSAEILAEIARI   90 (176)
T ss_dssp             SSCEEEEEECCSTTCCCCCCHHHHHHHHHH
T ss_pred             CCCEeEEEECChhhhcccCHHHHHHHHHHH
Confidence            568999999998766  3555556555543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.76  E-value=2.8e-05  Score=60.05  Aligned_cols=46  Identities=17%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             HHHHHHHh-hCCCCCCCCeEEEeCCcC------ChHHHHHhh-c--CCeEEEecCCHH
Q 030274           60 MLMNDYLS-KNPDVLQASSILELGSGV------GVTGILCSR-F--CREVLLTDHNEE  107 (180)
Q Consensus        60 ~~l~~~l~-~~~~~~~~~~vLdlG~G~------G~~~l~la~-~--~~~V~~~D~~~~  107 (180)
                      ..+.+|+. ......++.+|||||||+      |.  ..+++ .  +.+|+++|+++.
T Consensus        48 ~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           48 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence            34666763 333445778999999955      55  33443 3  379999999987

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.71  E-value=6.4e-05  Score=59.78  Aligned_cols=34  Identities=15%  Similarity=-0.001  Sum_probs=31.3

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNE  106 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~  106 (180)
                      .+|.+||||||.+|.++..+++.|.+|+++|..+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~  243 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP  243 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh
Confidence            4788999999999999999999999999999864

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.69  E-value=0.00047  Score=54.77  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=66.0

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      .++.+.+..|.-    .++.+|||++||.|.=++.++..+  ..|++.|.++.-++.+++|++..+..... ...++.+.
T Consensus       135 ~aS~l~~~~L~~----~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~-~~~~v~v~  209 (359)
T 4fzv_A          135 AASLLPVLALGL----QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIR-DGNQVRVT  209 (359)
T ss_dssp             GGGHHHHHHHCC----CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTT-TSSSEEEE
T ss_pred             HHHHHHHHHhCC----CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhc-cCCceEEE
Confidence            566666666532    267899999999998888777764  47999999999999999999987632110 11234444


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ..+..   .+.   ......||.|+...|+
T Consensus       210 ~~D~~---~~~---~~~~~~fD~VLlDaPC  233 (359)
T 4fzv_A          210 SWDGR---KWG---ELEGDTYDRVLVDVPC  233 (359)
T ss_dssp             CCCGG---GHH---HHSTTCEEEEEEECCC
T ss_pred             eCchh---hcc---hhccccCCEEEECCcc
Confidence            33322   111   2245789999987663

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.67  E-value=9.9e-05  Score=59.04  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             CeEEEeCCcCChHHHHHhhcCCe-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh--hCC
Q 030274           76 SSILELGSGVGVTGILCSRFCRE-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ--KYP  152 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  152 (180)
                      .+++||.||+|.+++-+.+.|.+ |.++|+++.+.+..+.|....            .+...+..+... ..+..  ...
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~------------~~~~~DI~~~~~-~~~~~~~~~~   69 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRS------------LHVQEDVSLLNA-EIIKGFFKND   69 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTS------------EEECCCGGGCCH-HHHHHHHCSC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCC------------ceEecChhhcCH-HHHHhhcccC
Confidence            48999999999999999888875 569999999999998885321            133333332211 11100  124


Q ss_pred             CCCcEEEEccccc
Q 030274          153 GGFDLILGADIYI  165 (180)
Q Consensus       153 ~~fD~Ii~~d~~y  165 (180)
                      ..+|+|++.+|+-
T Consensus        70 ~~~D~i~ggpPCQ   82 (376)
T 3g7u_A           70 MPIDGIIGGPPCQ   82 (376)
T ss_dssp             CCCCEEEECCCCC
T ss_pred             CCeeEEEecCCCC
Confidence            5899999999963

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.60  E-value=0.00017  Score=56.59  Aligned_cols=44  Identities=11%  Similarity=0.137  Sum_probs=38.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~  117 (180)
                      .+.+++||.||+|.+++.+.+.|. .|.++|.++.+++..+.|..
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            457999999999999999988886 57889999999999999863

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.59  E-value=6.2e-05  Score=59.45  Aligned_cols=73  Identities=25%  Similarity=0.224  Sum_probs=50.8

Q ss_pred             CeEEEeCCcCChHHHHHhhcC--C-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           76 SSILELGSGVGVTGILCSRFC--R-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~--~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .+|+||.||+|.+++.+.+.|  . .|+++|.++.+++..+.|.....            +..-+...... ..+ +  .
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~------------~~~~Di~~~~~-~~~-~--~   66 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQ------------LLAKTIEGITL-EEF-D--R   66 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSC------------EECSCGGGCCH-HHH-H--H
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccc------------cccCCHHHccH-hHc-C--c
Confidence            489999999999999998887  2 68999999999999999864321            22222222210 111 1  1


Q ss_pred             CCCcEEEEcccc
Q 030274          153 GGFDLILGADIY  164 (180)
Q Consensus       153 ~~fD~Ii~~d~~  164 (180)
                      ..+|+|++++|+
T Consensus        67 ~~~D~l~~gpPC   78 (343)
T 1g55_A           67 LSFDMILMSPPC   78 (343)
T ss_dssp             HCCSEEEECCC-
T ss_pred             CCcCEEEEcCCC
Confidence            269999999995

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.42  E-value=0.00064  Score=52.46  Aligned_cols=81  Identities=16%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||=||.|.|...-.+.+.  ..+|+.+|+++.+++.+++-+...+..  .....++++..-|-...      +...
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~--~~~dpRv~v~~~Dg~~~------l~~~  154 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAG--SYDDPRFKLVIDDGVNF------VNQT  154 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTT--GGGCTTEEEEESCTTTT------TSCS
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccc--ccCCCcEEEEechHHHH------Hhhc
Confidence            4579999999999988877775  479999999999999999887542110  00123555554443322      2234


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      ..+||+||..-
T Consensus       155 ~~~yDvIi~D~  165 (294)
T 3o4f_A          155 SQTFDVIISDC  165 (294)
T ss_dssp             SCCEEEEEESC
T ss_pred             cccCCEEEEeC
Confidence            67899999653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.26  E-value=0.00047  Score=52.52  Aligned_cols=56  Identities=18%  Similarity=0.089  Sum_probs=44.9

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCH
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNE  106 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~  106 (180)
                      .+|.+.-.++..|.+...+ ....++.+|||||||+|-++..+++. + ..|+++|+..
T Consensus        51 ~~~~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv  108 (277)
T 3evf_A           51 DTGVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR  108 (277)
T ss_dssp             SSCBCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             cCCCccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence            4577888899999999888 34446679999999999999987764 3 4788888763

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.20  E-value=0.00093  Score=51.63  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCe---EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRFCRE---VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~---V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ...+++||.||.|.+++.+.+.|.+   |.++|+++.+.+..+.|....            .+..-|..+... .. ++.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~------------~~~~~DI~~i~~-~~-i~~   80 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGK------------IMYVGDVRSVTQ-KH-IQE   80 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTC------------EEEECCGGGCCH-HH-HHH
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCC------------ceeCCChHHccH-HH-hcc
Confidence            4458999999999999988888854   589999999988888874321            123333333221 11 111


Q ss_pred             CCCCCcEEEEccccc
Q 030274          151 YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y  165 (180)
                       .+.+|+|++.+|+-
T Consensus        81 -~~~~Dll~ggpPCQ   94 (295)
T 2qrv_A           81 -WGPFDLVIGGSPCN   94 (295)
T ss_dssp             -TCCCSEEEECCCCG
T ss_pred             -cCCcCEEEecCCCc
Confidence             24799999999863

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.20  E-value=0.0011  Score=52.48  Aligned_cols=43  Identities=21%  Similarity=0.352  Sum_probs=38.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~  116 (180)
                      ++..|||||.|.|.++..++..  +.+|+++|.++..+..+++..
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            3578999999999999999875  579999999999999988775

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.16  E-value=0.0016  Score=52.58  Aligned_cols=46  Identities=11%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHh-hcC---CeEEEecCCHHHHHHHHHHHHH
Q 030274           73 LQASSILELGSGVGVTGILCS-RFC---REVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la-~~~---~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      .++..|+|+||+.|..++.++ +.+   .+|+++|.++...+.+++|++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            367799999999999999877 432   6999999999999999999998

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.11  E-value=0.00084  Score=52.65  Aligned_cols=73  Identities=19%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             CCeEEEeCCcCChHHHHHhhcC---CeE-EEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGSGVGVTGILCSRFC---REV-LLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~---~~V-~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ..+++||.||.|.+++.+.+.|   ..| .++|+++.+.+..+.|....             ...-+..+.+. ..+ + 
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------------~~~~DI~~~~~-~~i-~-   73 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------------VQVKNLDSISI-KQI-E-   73 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------------CBCCCTTTCCH-HHH-H-
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------------cccCChhhcCH-HHh-c-
Confidence            3489999999999999888877   345 69999999999999886322             11122222211 111 1 


Q ss_pred             CCCCCcEEEEcccc
Q 030274          151 YPGGFDLILGADIY  164 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~  164 (180)
                       ...+|++++++|+
T Consensus        74 -~~~~Dil~ggpPC   86 (327)
T 3qv2_A           74 -SLNCNTWFMSPPC   86 (327)
T ss_dssp             -HTCCCEEEECCCC
T ss_pred             -cCCCCEEEecCCc
Confidence             1269999999985

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.10  E-value=0.0007  Score=53.23  Aligned_cols=74  Identities=22%  Similarity=0.119  Sum_probs=51.0

Q ss_pred             CeEEEeCCcCChHHHHHhhcCC---eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           76 SSILELGSGVGVTGILCSRFCR---EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~---~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .+++||.||.|.+++.+.+.|.   -|.++|+++.+.+..+.|.....            +..-++.+.+. ..+ +  .
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~------------~~~~DI~~~~~-~~~-~--~   67 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETN------------LLNRNIQQLTP-QVI-K--K   67 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSC------------EECCCGGGCCH-HHH-H--H
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCc------------eeccccccCCH-HHh-c--c
Confidence            3799999999999988887773   47899999999998888864321            22233332211 111 1  1


Q ss_pred             CCCcEEEEccccc
Q 030274          153 GGFDLILGADIYI  165 (180)
Q Consensus       153 ~~fD~Ii~~d~~y  165 (180)
                      ..+|++++++|+-
T Consensus        68 ~~~D~l~ggpPCQ   80 (333)
T 4h0n_A           68 WNVDTILMSPPCQ   80 (333)
T ss_dssp             TTCCEEEECCCCC
T ss_pred             CCCCEEEecCCCc
Confidence            3699999999864

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.07  E-value=0.00071  Score=52.76  Aligned_cols=71  Identities=14%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             CeEEEeCCcCChHHHHHhhcCCe-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           76 SSILELGSGVGVTGILCSRFCRE-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      .+||||.||.|.+++-+.+.|.+ |.++|+++.+.+..+.|....             +..-|..+.+      ...-..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~-------------~~~~DI~~i~------~~~~~~   61 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAK-------------LIKGDISKIS------SDEFPK   61 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSE-------------EEESCGGGCC------GGGSCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCC-------------cccCChhhCC------HhhCCc
Confidence            37999999999999888888864 579999999998888874211             2222222221      112347


Q ss_pred             CcEEEEccccc
Q 030274          155 FDLILGADIYI  165 (180)
Q Consensus       155 fD~Ii~~d~~y  165 (180)
                      .|+|++.+|+-
T Consensus        62 ~D~l~ggpPCQ   72 (331)
T 3ubt_Y           62 CDGIIGGPPSQ   72 (331)
T ss_dssp             CSEEECCCCGG
T ss_pred             ccEEEecCCCC
Confidence            99999999863

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.05  E-value=0.0011  Score=50.55  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHH
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEE  107 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~  107 (180)
                      |.+.-.++.+|.+...+. .+.++.+|||||||.|-++..+++. + ..|+++|+...
T Consensus        69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            777888999999988876 4557779999999999999988753 4 47899998753

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.01  E-value=0.00083  Score=52.50  Aligned_cols=61  Identities=18%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH---HHHHHHHHHHHHhc
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE---EVLKILKKNIEHHT  120 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~---~~l~~~~~n~~~n~  120 (180)
                      ...|.+.+.+... .++..|||-.||+|..++++.+.|.+.+++|+++   ...+.+++++...+
T Consensus       228 p~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          228 PAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3556665554322 3678999999999999999999999999999999   99999998876653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.98  E-value=0.00085  Score=52.46  Aligned_cols=59  Identities=10%  Similarity=0.168  Sum_probs=47.1

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .|.+.+.+... .++..|||-.||+|..++++.+.|.+.+++|+++...+.+++++...+
T Consensus       240 ~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          240 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            44444443221 367899999999999999999999999999999999999998876543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.90  E-value=0.00096  Score=50.54  Aligned_cols=33  Identities=12%  Similarity=0.037  Sum_probs=25.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-------C-------CeEEEecCCH
Q 030274           74 QASSILELGSGVGVTGILCSRF-------C-------REVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-------~-------~~V~~~D~~~  106 (180)
                      +..+|||+|+|+|+..+.+++.       +       .+|+++|..+
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            3469999999999988876542       1       3899999876

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.89  E-value=0.0016  Score=50.00  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCH
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNE  106 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~  106 (180)
                      .+|..+-.++..|.+...+ ..+.++.+||||||++|-++..++.. + .+|+++|+-.
T Consensus        71 ~~g~y~SR~~~KL~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~  128 (321)
T 3lkz_A           71 TGGHPVSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG  128 (321)
T ss_dssp             SSCCCSSTHHHHHHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred             cCCCccchHHHHHHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence            4577888899999888777 34457779999999999999966654 5 5799999865

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.81  E-value=0.0018  Score=49.72  Aligned_cols=48  Identities=19%  Similarity=0.187  Sum_probs=37.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-------CCeEEEecCCH--------------------------HHHHHHHHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSRF-------CREVLLTDHNE--------------------------EVLKILKKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-------~~~V~~~D~~~--------------------------~~l~~~~~n~~~n~  120 (180)
                      ..++|||+|+..|..++.++..       +.+|+++|..+                          ..++.+++|++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3569999999999999887652       56899999532                          14677899999876


Q ss_pred             C
Q 030274          121 S  121 (180)
Q Consensus       121 ~  121 (180)
                      .
T Consensus       186 l  186 (282)
T 2wk1_A          186 L  186 (282)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.67  E-value=0.0037  Score=48.06  Aligned_cols=55  Identities=18%  Similarity=0.063  Sum_probs=45.3

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCH
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNE  106 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~  106 (180)
                      +|...-.++..|.+...+ .-..++.+||||||++|-++..+++. + ..|+++|+..
T Consensus        59 ~g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           59 VGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             SCCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            477788899999999888 43457789999999999999999974 4 4789999864

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.63  E-value=0.0039  Score=46.54  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=44.0

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCH
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNE  106 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~  106 (180)
                      |...-.++..|.+...+. ...++.+||||||++|-++..++.. + .+|+++|.-.
T Consensus        57 g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~  112 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG  112 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred             CCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence            777788889998887776 4557779999999999999966654 4 5899999865

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.60  E-value=0.0035  Score=49.17  Aligned_cols=77  Identities=16%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...++..++|..||.|.-+..+++. +  .+|+++|.++.+++.++ ++  .        ..++.+..-++.+   +...
T Consensus        54 ~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--------~~Rv~lv~~nF~~---l~~~  119 (347)
T 3tka_A           54 NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--------DPRFSIIHGPFSA---LGEY  119 (347)
T ss_dssp             CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--------CTTEEEEESCGGG---HHHH
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--------CCcEEEEeCCHHH---HHHH
Confidence            3447889999999999888887764 3  69999999999999884 43  1        1245555544443   3333


Q ss_pred             HhhC--CCCCcEEEEc
Q 030274          148 IQKY--PGGFDLILGA  161 (180)
Q Consensus       148 ~~~~--~~~fD~Ii~~  161 (180)
                      +...  .+++|.|+..
T Consensus       120 L~~~g~~~~vDgILfD  135 (347)
T 3tka_A          120 VAERDLIGKIDGILLD  135 (347)
T ss_dssp             HHHTTCTTCEEEEEEE
T ss_pred             HHhcCCCCcccEEEEC
Confidence            3322  2358888764

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.52  E-value=0.0037  Score=49.88  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      +.++||=||.|.|...-.+.+. ..+|+.+|+++.+++.+++-+.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp  249 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMR  249 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhch
Confidence            4579999999999888777765 4689999999999999998753

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.29  E-value=0.0051  Score=50.66  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=36.5

Q ss_pred             CCeEEEeCCcCChHHHHHhhcCCe-EEEecCCHHHHHHHHHHH
Q 030274           75 ASSILELGSGVGVTGILCSRFCRE-VLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~~~~-V~~~D~~~~~l~~~~~n~  116 (180)
                      ..+++||.||.|.+++-+.+.|.+ |.++|.++.+.+..+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            358999999999999988888864 799999999998888885

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.21  E-value=0.025  Score=42.65  Aligned_cols=84  Identities=11%  Similarity=0.156  Sum_probs=62.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|==|++.|+   ++..+++.|++|+.+|.+++.++.+.+.++..+        .++.....|..+.+....+..
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--------~~~~~~~~Dvt~~~~v~~~~~   76 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--------KEVLGVKADVSKKKDVEEFVR   76 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            478899999988875   445566779999999999998888888777664        346677888888776655543


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.|--+
T Consensus        77 ~~~~~~G~iDiLVNNAGi   94 (254)
T 4fn4_A           77 RTFETYSRIDVLCNNAGI   94 (254)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCcc
Confidence            2   23689999987643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.10  E-value=0.023  Score=45.40  Aligned_cols=43  Identities=30%  Similarity=0.389  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILK  113 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~  113 (180)
                      ...++.+||-+|||. |..++.+|+ .|+ +|+++|.+++-++.++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            445788999999976 888887777 477 9999999988777665

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.09  E-value=0.0099  Score=44.82  Aligned_cols=45  Identities=18%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF   95 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~   95 (180)
                      .+|...-.++..|.+--.+. -..++.+||||||+.|.++..+++.
T Consensus        50 ~~g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           50 VGGHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             CCSCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred             cCCCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence            45777778888888877775 3446889999999999999999886

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.01  E-value=0.031  Score=42.09  Aligned_cols=86  Identities=13%  Similarity=0.063  Sum_probs=61.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...+        .++.....|..+.+....+..
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--------~~~~~~~~Dv~~~~~v~~~~~   78 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--------YDAHGVAFDVTDELAIEAAFS   78 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--------CCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEeeCCCHHHHHHHHH
Confidence            478899999988774   455566779999999999988887777776654        245566677777665554432


Q ss_pred             ---hCCCCCcEEEEcccccc
Q 030274          150 ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y~  166 (180)
                         ...++.|+++.|--+..
T Consensus        79 ~~~~~~G~iDiLVNNAG~~~   98 (255)
T 4g81_D           79 KLDAEGIHVDILINNAGIQY   98 (255)
T ss_dssp             HHHHTTCCCCEEEECCCCCC
T ss_pred             HHHHHCCCCcEEEECCCCCC
Confidence               34568999998875433

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.87  E-value=0.079  Score=41.72  Aligned_cols=47  Identities=26%  Similarity=0.409  Sum_probs=36.6

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-+|||. |..++.+|+ .|+ +|+++|.+++-++.+++
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            444555788999999876 777777776 476 79999999988887764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.60  E-value=0.05  Score=42.22  Aligned_cols=80  Identities=15%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             hCCCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           68 KNPDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      +.....++++||-.|+  |.|...+.+++ .|++|++++.+++-++.+.+.   .+          . ...++..+.+..
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g----------~-~~~~~~~~~~~~  208 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LG----------F-DGAIDYKNEDLA  208 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TC----------C-SEEEETTTSCHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cC----------C-CEEEECCCHHHH
Confidence            4555668899999998  34777666665 488999999998766666322   22          0 122344443323


Q ss_pred             hHHHhhCCCCCcEEEEc
Q 030274          145 NKIIQKYPGGFDLILGA  161 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~  161 (180)
                      ........+.+|+|+-+
T Consensus       209 ~~~~~~~~~~~d~vi~~  225 (336)
T 4b7c_A          209 AGLKRECPKGIDVFFDN  225 (336)
T ss_dssp             HHHHHHCTTCEEEEEES
T ss_pred             HHHHHhcCCCceEEEEC
Confidence            33333334578888754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.51  E-value=0.046  Score=42.51  Aligned_cols=47  Identities=19%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-.|+|. |..++.+++ .|++|+++|.+++-++.+++
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            444556788999999975 888887777 47899999999987777654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.41  E-value=0.15  Score=37.99  Aligned_cols=83  Identities=14%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~   80 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--------RRALSVGTDITDDAQVAHLVD   80 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence            467899999998774   334455678999999999888877777666543        346677788887766554432


Q ss_pred             ---hCCCCCcEEEEccc
Q 030274          150 ---KYPGGFDLILGADI  163 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~  163 (180)
                         ...++.|++|.+--
T Consensus        81 ~~~~~~g~id~lv~nAg   97 (264)
T 3ucx_A           81 ETMKAYGRVDVVINNAF   97 (264)
T ss_dssp             HHHHHTSCCSEEEECCC
T ss_pred             HHHHHcCCCcEEEECCC
Confidence               12357999998763

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.08  E-value=0.058  Score=41.04  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+   +        .++.....|..+.+....+.
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--------~~~~~~~~Dv~~~~~v~~~~   94 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--------GGAVGIQADSANLAELDRLY   94 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------TTCEEEECCTTCHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--------CCeEEEEecCCCHHHHHHHH
Confidence            3588999999998874   44556677999999999998777665443   2        12445677777776655543


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|+++.|--+
T Consensus        95 ~~~~~~~G~iDiLVNNAG~  113 (273)
T 4fgs_A           95 EKVKAEAGRIDVLFVNAGG  113 (273)
T ss_dssp             HHHHHHHSCEEEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            32   23589999887644

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.04  E-value=0.13  Score=38.24  Aligned_cols=86  Identities=14%  Similarity=0.215  Sum_probs=59.4

Q ss_pred             CCCCeEEEeCC-cCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGS-GVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~-G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++||=.|+ |.|+   ++..+++.|++|++++.+...++.+.+.+...+       ..++.+...|..+.+.+..+.
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dl~~~~~v~~~~   92 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-------LGRVEAVVCDVTSTEAVDALI   92 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-------SSCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-------CCceEEEEeCCCCHHHHHHHH
Confidence            46789999998 6664   334456678999999999887777766664432       235777888888776555443


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|++|.+--+.
T Consensus        93 ~~~~~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           93 TQTVEKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             HHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHhCCCcEEEECCCcC
Confidence            21   224789999887543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.00  E-value=0.089  Score=40.90  Aligned_cols=47  Identities=13%  Similarity=0.113  Sum_probs=36.3

Q ss_pred             hCCCCCCCCeEEEeCCcC--ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV--GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~--G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-.|+|.  |..++.+++ .|++|+++|.+++-++.+++
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            445556788999999974  666666666 48899999998887777765

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.97  E-value=0.058  Score=43.14  Aligned_cols=56  Identities=20%  Similarity=0.166  Sum_probs=35.4

Q ss_pred             HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhc---------CCeEEEecCCHHHHHHHHHH
Q 030274           60 MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRF---------CREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        60 ~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~---------~~~V~~~D~~~~~l~~~~~n  115 (180)
                      +.++.|+.+.   ......-.|+|+|+|.|.++.-+.+.         ..+++.+|.|+...+.-+++
T Consensus        63 e~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~  130 (387)
T 1zkd_A           63 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL  130 (387)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHH
Confidence            5566665541   11123347999999999876643221         23899999999766644433

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=94.97  E-value=0.15  Score=37.88  Aligned_cols=80  Identities=10%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=-|++.| +|..    +++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         4 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~   74 (260)
T 2qq5_A            4 NGQVCVVTGASRG-IGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--------GQCVPVVCDSSQESEVRSLFE   74 (260)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--------SEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--------CceEEEECCCCCHHHHHHHHH
Confidence            5678888887655 3444    44568999999999877766655554432        245667778777665554433


Q ss_pred             hC----CCCCcEEEEcc
Q 030274          150 KY----PGGFDLILGAD  162 (180)
Q Consensus       150 ~~----~~~fD~Ii~~d  162 (180)
                      ..    .++.|++|.+-
T Consensus        75 ~~~~~~~g~id~lvnnA   91 (260)
T 2qq5_A           75 QVDREQQGRLDVLVNNA   91 (260)
T ss_dssp             HHHHHHTTCCCEEEECC
T ss_pred             HHHHhcCCCceEEEECC
Confidence            21    46799999876

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=94.86  E-value=0.13  Score=37.80  Aligned_cols=81  Identities=20%  Similarity=0.333  Sum_probs=53.4

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++||=.|++.|+   ++..+++.|++|++++.++..++.+.+.+..           ++.+...+..+.+....+.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~   79 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKD-----------NYTIEVCNLANKEECSNLI   79 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCS-----------SEEEEECCTTSHHHHHHHH
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcc-----------CccEEEcCCCCHHHHHHHH
Confidence            4578899999987653   2334455689999999998766665544321           3556667777665555554


Q ss_pred             hhCCCCCcEEEEcccc
Q 030274          149 QKYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~  164 (180)
                      ... ++.|+++.+--+
T Consensus        80 ~~~-~~id~li~~Ag~   94 (249)
T 3f9i_A           80 SKT-SNLDILVCNAGI   94 (249)
T ss_dssp             HTC-SCCSEEEECCC-
T ss_pred             Hhc-CCCCEEEECCCC
Confidence            433 579999987654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.79  E-value=0.11  Score=38.59  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      +++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.+...|..+.+.+..+.. 
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~   77 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--------GRIVARSLDARNEDEVTAFLNA   77 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--------CEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECcCCCHHHHHHHHHH
Confidence            67789999988764   333455568999999999887777777766653        356677788877765554432 


Q ss_pred             --hCCCCCcEEEEccccc
Q 030274          150 --KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~y  165 (180)
                        .. ++.|++|.+--+.
T Consensus        78 ~~~~-g~id~lv~nAg~~   94 (252)
T 3h7a_A           78 ADAH-APLEVTIFNVGAN   94 (252)
T ss_dssp             HHHH-SCEEEEEECCCCC
T ss_pred             HHhh-CCceEEEECCCcC
Confidence              22 6899999877543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.77  E-value=0.12  Score=40.71  Aligned_cols=44  Identities=20%  Similarity=0.396  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=.|+|. |..++.+|+. |+ +|+++|.+++-++.+++
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            345788999999975 7777777764 76 99999999987777765

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.76  E-value=0.25  Score=36.89  Aligned_cols=86  Identities=21%  Similarity=0.221  Sum_probs=56.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+      ....+.....|..+.+.......
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~D~~~~~~~~~~~~   81 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQY------PDAILQPVVADLGTEQGCQDVIE   81 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHC------TTCEEEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC------CCceEEEEecCCCCHHHHHHHHH
Confidence            467889988876653   233445568999999999887777666665543      12245556667776655555543


Q ss_pred             hCCCCCcEEEEccccc
Q 030274          150 KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y  165 (180)
                      . .++.|+++.+--+.
T Consensus        82 ~-~g~id~lv~nAg~~   96 (267)
T 3t4x_A           82 K-YPKVDILINNLGIF   96 (267)
T ss_dssp             H-CCCCSEEEECCCCC
T ss_pred             h-cCCCCEEEECCCCC
Confidence            3 35799999876543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.76  E-value=0.083  Score=39.46  Aligned_cols=83  Identities=13%  Similarity=0.195  Sum_probs=57.6

Q ss_pred             CCCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ++++++|=-|++.  |+   ++..+++.|++|+.+|.+++.++.+.+-++..+       ..++.....|..+.+....+
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~   76 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-------QPEAHLYQIDVQSDEEVING   76 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-------CSSCEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CCcEEEEEccCCCHHHHHHH
Confidence            4788999999643  43   455667789999999999887777776665543       23466777888877655544


Q ss_pred             Hh---hCCCCCcEEEEcc
Q 030274          148 IQ---KYPGGFDLILGAD  162 (180)
Q Consensus       148 ~~---~~~~~fD~Ii~~d  162 (180)
                      ..   ...++.|+++.|-
T Consensus        77 ~~~~~~~~G~iD~lvnnA   94 (256)
T 4fs3_A           77 FEQIGKDVGNIDGVYHSI   94 (256)
T ss_dssp             HHHHHHHHCCCSEEEECC
T ss_pred             HHHHHHHhCCCCEEEecc
Confidence            32   2236899998774

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.68  E-value=0.049  Score=42.43  Aligned_cols=44  Identities=27%  Similarity=0.276  Sum_probs=35.9

Q ss_pred             CCeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           75 ASSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        75 ~~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ..+|-=||||+ | .++..+|..|.+|+..|.+++.++.+.++++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~   51 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRK   51 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHH
Confidence            45899999998 5 46777788899999999999988888777654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.67  E-value=0.27  Score=37.89  Aligned_cols=46  Identities=20%  Similarity=0.127  Sum_probs=35.0

Q ss_pred             CCCCCCCCeEEEeC-Cc-CChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           69 NPDVLQASSILELG-SG-VGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        69 ~~~~~~~~~vLdlG-~G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      .....++++||=.| +| .|...+.+++ .|++|++++.+++-++.+++
T Consensus       135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          135 TYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34455788999999 44 3777777766 48899999999887777764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.67  E-value=0.3  Score=35.80  Aligned_cols=84  Identities=10%  Similarity=0.077  Sum_probs=57.2

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      .++++|=.|++.|+   ++..+++.|++|++++.++..++.+...++..+        .++.....|..+.+.+..+.. 
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~   75 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--------FKARGLVLNISDIESIQNFFAE   75 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEecCCCHHHHHHHHHH
Confidence            56788888876553   233445568999999999887777766666543        346677778877665554432 


Q ss_pred             --hCCCCCcEEEEccccc
Q 030274          150 --KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~y  165 (180)
                        ...++.|+++.+--+.
T Consensus        76 ~~~~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           76 IKAENLAIDILVNNAGIT   93 (247)
T ss_dssp             HHHTTCCCSEEEECCCCC
T ss_pred             HHHHcCCCCEEEECCCCC
Confidence              2345799999887544

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=94.64  E-value=0.034  Score=45.09  Aligned_cols=59  Identities=14%  Similarity=0.186  Sum_probs=39.6

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh----cC---CeEEEecCCHHHHHHHHHHHHH
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR----FC---REVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~----~~---~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      +.++.|+.+........+|+|+|+|.|.+..-+.+    .+   .+++.+|.|+.+.+.-++++..
T Consensus       123 e~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          123 QTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            45666654432211246899999999987664432    22   4899999999877777777654

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.62  E-value=0.043  Score=49.05  Aligned_cols=43  Identities=12%  Similarity=0.003  Sum_probs=36.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC--eEEEecCCHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRFCR--EVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~--~V~~~D~~~~~l~~~~~n~  116 (180)
                      ...+++||.||.|.+++-+.+.|.  -|.++|+++.+.+..+.|.
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~  583 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN  583 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            334899999999999998888885  4789999999998888874

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.61  E-value=0.25  Score=39.28  Aligned_cols=85  Identities=11%  Similarity=0.003  Sum_probs=47.5

Q ss_pred             CCeEEEeCCcCChHHHHHhh--------c---------CCeEEEecCCHHHHHHHHHHHHHhcCCC-------CCC-CCC
Q 030274           75 ASSILELGSGVGVTGILCSR--------F---------CREVLLTDHNEEVLKILKKNIEHHTSSE-------NPN-SDA  129 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~--------~---------~~~V~~~D~~~~~l~~~~~n~~~n~~~~-------~~~-~~~  129 (180)
                      ..+|+|+|||+|..++.+..        .         ..+|+..|......+.+=+++.......       ... ...
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            46899999999988887621        1         2478888886665555554443321000       000 000


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      =+....-.+-..     +  .+..++|+|+++-+++|
T Consensus       133 f~~gvpgSFy~r-----l--fP~~S~d~v~Ss~aLHW  162 (374)
T 3b5i_A          133 FVAGVPGSFYRR-----L--FPARTIDFFHSAFSLHW  162 (374)
T ss_dssp             EEEEEESCTTSC-----C--SCTTCEEEEEEESCTTB
T ss_pred             EEEecChhhhcc-----c--CCCcceEEEEecceeee
Confidence            011111111111     1  24679999999999988

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.60  E-value=0.14  Score=37.72  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=57.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++||=.|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   78 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--------GTAISVAVDVSDPESAKAMAD   78 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CEEEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            367889999986653   333445568999999999988877777666543        346667777777665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        79 ~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           79 RTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            1   12479999988654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.56  E-value=0.22  Score=38.48  Aligned_cols=45  Identities=16%  Similarity=0.081  Sum_probs=32.9

Q ss_pred             hCCCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHH
Q 030274           68 KNPDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKIL  112 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~  112 (180)
                      +.....++++||-.||  |.|...+.+++ .|++|+++|.+++.++.+
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL  186 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4444557889999998  34665555554 588999999988777666

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.54  E-value=0.18  Score=37.52  Aligned_cols=85  Identities=12%  Similarity=0.103  Sum_probs=58.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+        .++.....|..+.+....+..
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~   81 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--------GKAIGLECNVTDEQHREAVIK   81 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEECCCCCHHHHHHHHH
Confidence            467889999987664   333455568999999999887777776666543        346677778777665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+++.+--+.
T Consensus        82 ~~~~~~g~id~lv~nAg~~  100 (256)
T 3gaf_A           82 AALDQFGKITVLVNNAGGG  100 (256)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   124799999886543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=94.50  E-value=0.17  Score=37.91  Aligned_cols=84  Identities=13%  Similarity=0.150  Sum_probs=57.0

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+...
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~d~~~v~~~~~~   74 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--------GTALAQVLDVTDRHSVAAFAQA   74 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--------CEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHHH
Confidence            46788888887664   333455568999999999888777776666543        3466677788776655444321


Q ss_pred             ---CCCCCcEEEEccccc
Q 030274          151 ---YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~y  165 (180)
                         ..++.|++|.+--+.
T Consensus        75 ~~~~~g~iD~lVnnAG~~   92 (264)
T 3tfo_A           75 AVDTWGRIDVLVNNAGVM   92 (264)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHHcCCCCEEEECCCCC
Confidence               235799999886543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.49  E-value=0.26  Score=37.97  Aligned_cols=86  Identities=10%  Similarity=0.086  Sum_probs=59.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++||=-|++.|+   ++..+++.|++|++++.++..++.+...+...+      ...++.+...|..+.+.+..+..
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~~~~~v~~~~~   79 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG------SGPEVMGVQLDVASREGFKMAAD   79 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------CGGGEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCCeEEEEECCCCCHHHHHHHHH
Confidence            367789999988764   233344568999999999988877777766553      11246777888887765554432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        80 ~~~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           80 EVEARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHHHTCCEEEEEECCCC
T ss_pred             HHHHhCCCCCEEEECCCc
Confidence            1   23578999988754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.48  E-value=0.053  Score=42.34  Aligned_cols=44  Identities=18%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-+|+|. |..++.+|+ .|++|+++|.+++-++.+++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence            455788999999975 777777776 47899999999887777654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.48  E-value=0.17  Score=35.91  Aligned_cols=45  Identities=13%  Similarity=0.237  Sum_probs=31.5

Q ss_pred             CCCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           69 NPDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      .....++++||-.|+  |.|.....+++ .|++|+++|.+++.++.++
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            334557889999995  34555554444 5889999999987666554

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.47  E-value=0.21  Score=38.15  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=58.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++||=.|++.|+   ++..+++.|++|++++.++..++.+.+.+...+        .++.+...|..+.+.+..+..
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~d~~~v~~~~~  100 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--------FDAHGVVCDVRHLDEMVRLAD  100 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHHH
Confidence            477899999987663   333445568999999999988877777666543        346677788887765544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus       101 ~~~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A          101 EAFRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHHHHSSCSEEEECCCCC
T ss_pred             HHHHhCCCCCEEEECCCcC
Confidence            1   124799999886543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.46  E-value=0.38  Score=35.94  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             CCCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           72 VLQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...+++||=.|++.| +|..+    ++.|++|++++.++..++.+.+.++..+        .++.+...|..+.+.+..+
T Consensus        28 ~l~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~v~~~   98 (272)
T 1yb1_A           28 SVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--------AKVHTFVVDCSNREDIYSS   98 (272)
T ss_dssp             CCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHH
T ss_pred             ccCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--------CeEEEEEeeCCCHHHHHHH
Confidence            356788998887654 45544    4458999999999877766666555432        2466777788776655444


Q ss_pred             Hh---hCCCCCcEEEEccccc
Q 030274          148 IQ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~~---~~~~~fD~Ii~~d~~y  165 (180)
                      ..   ...+++|+||.+--+.
T Consensus        99 ~~~~~~~~g~iD~li~~Ag~~  119 (272)
T 1yb1_A           99 AKKVKAEIGDVSILVNNAGVV  119 (272)
T ss_dssp             HHHHHHHTCCCSEEEECCCCC
T ss_pred             HHHHHHHCCCCcEEEECCCcC
Confidence            32   1234799999887543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.42  E-value=0.19  Score=37.40  Aligned_cols=83  Identities=18%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++||=.|++.| +|..    +++.|++|++++.+++.++.+.+.+...+        .++.+...|..+.+.+..+.
T Consensus        27 l~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~   97 (262)
T 3rkr_A           27 LSGQVAVVTGASRG-IGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--------GEAESHACDLSHSDAIAAFA   97 (262)
T ss_dssp             TTTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--------CceeEEEecCCCHHHHHHHH
Confidence            46788999887655 3444    44568999999999988777777666553        34667777777766554443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|++|.+--+
T Consensus        98 ~~~~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A           98 TGVLAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCc
Confidence            21   22479999987654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.30  E-value=0.2  Score=39.29  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEeC-Cc-CChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELG-SG-VGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG-~G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-.| +| .|...+.+++ .|++|++++.+++-++.+++
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            345788999999 44 4877777776 47899999999877777654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.26  E-value=0.35  Score=37.60  Aligned_cols=45  Identities=18%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CCCCCCCeEEEeCCcC--ChHHHHHhh-c-CCeEEEecCCHHHHHHHHH
Q 030274           70 PDVLQASSILELGSGV--GVTGILCSR-F-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~--G~~~l~la~-~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      ....++++||-.|+|.  |...+.+++ . |++|+++|.+++.++.+++
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            3445788999999984  555555554 5 8999999999887777753

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=94.25  E-value=0.27  Score=36.51  Aligned_cols=83  Identities=11%  Similarity=0.190  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+.
T Consensus         7 l~~k~vlVTGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~   77 (260)
T 2ae2_A            7 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--------FKVEASVCDLSSRSERQELM   77 (260)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHH
Confidence            36778998887655 3443    44568999999999877666655554432        24566777777765554443


Q ss_pred             h----hCCCCCcEEEEcccc
Q 030274          149 Q----KYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~----~~~~~fD~Ii~~d~~  164 (180)
                      .    ...++.|+++.+--+
T Consensus        78 ~~~~~~~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           78 NTVANHFHGKLNILVNNAGI   97 (260)
T ss_dssp             HHHHHHTTTCCCEEEECCCC
T ss_pred             HHHHHHcCCCCCEEEECCCC
Confidence            2    122679999987654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.23  E-value=0.21  Score=39.02  Aligned_cols=47  Identities=23%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             hCCCCCCCCeEEEeC-Cc-CChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELG-SG-VGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG-~G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++++||-.| +| .|...+.+++ .|++|+++|.+++-++.+++
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER  210 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            444556788999995 33 3777776666 48899999999988777764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.21  E-value=0.1  Score=41.50  Aligned_cols=44  Identities=25%  Similarity=0.308  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-+|||. |+.++.+|+. |+ +|+++|.+++-++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            445788999999876 8888888874 76 79999999987777754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.20  E-value=0.094  Score=40.97  Aligned_cols=47  Identities=9%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||=+|+|. |..++.+|+. |+ +|+++|.+++-++.+++
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            333445788999999876 7777777774 66 89999999887777765

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.20  E-value=0.32  Score=35.80  Aligned_cols=84  Identities=19%  Similarity=0.269  Sum_probs=54.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~~~~~~~~~~~   76 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--------AKVHVLELDVADRQGVDAAVA   76 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEECCCCCHHHHHHHHH
Confidence            367789999976653   233345568999999999877776666555432        246667778777665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+--+
T Consensus        77 ~~~~~~g~id~lv~nAg~   94 (247)
T 2jah_A           77 STVEALGGLDILVNNAGI   94 (247)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   12479999987644

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.18  E-value=0.27  Score=38.03  Aligned_cols=45  Identities=22%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             CCCCCCCeEEEeCC-c-CChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           70 PDVLQASSILELGS-G-VGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~~~vLdlG~-G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ....++++||=.|+ | .|...+.+++ .|++|++++.+++-++.+++
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34557889999994 4 3777776666 48899999999887776654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.17  E-value=0.14  Score=38.03  Aligned_cols=84  Identities=19%  Similarity=0.330  Sum_probs=56.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|++++.+++.++.+...+...+        .++.....|..+.+.+..+..
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~   75 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--------GQILTVQMDVRNTDDIQKMIE   75 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--------TCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            467889988876653   233455568999999999887776665554322        356677888887765554432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+--+
T Consensus        76 ~~~~~~g~id~lv~nAg~   93 (257)
T 3imf_A           76 QIDEKFGRIDILINNAAG   93 (257)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   22478999987643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.13  E-value=0.15  Score=40.04  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=36.9

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||=+|+|. |..++.+++ .|++|+++|.+++-++.+++
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH
Confidence            445556788999999876 777777776 48899999999887777654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.10  E-value=0.47  Score=35.73  Aligned_cols=84  Identities=8%  Similarity=0.058  Sum_probs=56.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++|=-|++.|+   ++..+++.|++|++++. +++.++.+.+.+...+        .++.+...|..+.+....+.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~   98 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--------ARVIFLRADLADLSSHQATV   98 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--------CCEEEEECCTTSGGGHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHH
Confidence            467889999987664   33345566899999995 6666666666655543        34667788888876655443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|++|.+--+
T Consensus        99 ~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           99 DAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHHHHHHSCCCEEEEECC-
T ss_pred             HHHHHHcCCCCEEEECCCc
Confidence            21   22478999987654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.10  E-value=0.16  Score=33.96  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             CCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++|+=+|+|.  +|..+    .+.|.+|+++|.+++.++.++.    .+          ..+...+..+.+.+.   ..
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----------~~~~~gd~~~~~~l~---~~   66 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----------FDAVIADPTDESFYR---SL   66 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----------CEEEECCTTCHHHHH---HS
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----------CcEEECCCCCHHHHH---hC
Confidence            45788899854  45444    4458899999999987766653    22          224444444332221   11


Q ss_pred             CCCCCcEEEEccc
Q 030274          151 YPGGFDLILGADI  163 (180)
Q Consensus       151 ~~~~fD~Ii~~d~  163 (180)
                      ....+|+|+.+-.
T Consensus        67 ~~~~~d~vi~~~~   79 (141)
T 3llv_A           67 DLEGVSAVLITGS   79 (141)
T ss_dssp             CCTTCSEEEECCS
T ss_pred             CcccCCEEEEecC
Confidence            2357898887654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.08  E-value=0.3  Score=36.42  Aligned_cols=86  Identities=12%  Similarity=0.227  Sum_probs=58.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++||=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+....       ..++.....|..+.+....+..
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dv~~~~~v~~~~~   90 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-------GTDVHTVAIDLAEPDAPAELAR   90 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------CCCEEEEECCTTSTTHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-------CCcEEEEEecCCCHHHHHHHHH
Confidence            367889988887653   333455568999999999887777766665421       1346777888888776554432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        91 ~~~~~~g~id~lv~nAg~~  109 (266)
T 4egf_A           91 RAAEAFGGLDVLVNNAGIS  109 (266)
T ss_dssp             HHHHHHTSCSEEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCcC
Confidence            1   224799999876543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.05  E-value=0.5  Score=36.62  Aligned_cols=44  Identities=27%  Similarity=0.412  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-.|+  |.|...+.+++ .|++|++++.+++-++.+++
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            4557889999998  34777766665 57899999999887777753

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=94.05  E-value=0.31  Score=36.50  Aligned_cols=84  Identities=13%  Similarity=0.155  Sum_probs=54.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+....+..
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   90 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------LNVEGSVCDLLSRTERDKLMQ   90 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEECCCCCHHHHHHHHH
Confidence            367889999976553   233344568999999999877666555554432        245667777777665544432


Q ss_pred             ----hCCCCCcEEEEcccc
Q 030274          150 ----KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ----~~~~~fD~Ii~~d~~  164 (180)
                          ...++.|++|.+--+
T Consensus        91 ~~~~~~~g~id~lv~nAg~  109 (273)
T 1ae1_A           91 TVAHVFDGKLNILVNNAGV  109 (273)
T ss_dssp             HHHHHTTSCCCEEEECCCC
T ss_pred             HHHHHcCCCCcEEEECCCC
Confidence                122689999988654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.05  E-value=0.26  Score=37.21  Aligned_cols=85  Identities=11%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC-chhhHHHh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS-DQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  149 (180)
                      ++++||=-|++.|+   ++..+++.|++|++++.++...+.+.+.+...+       ..++.+...|..+. +....+..
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dl~~~~~~v~~~~~   83 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-------HENVVFHQLDVTDPIATMSSLAD   83 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------CCSEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CCceEEEEccCCCcHHHHHHHHH
Confidence            56789988887653   233344568999999999877766666655442       23577788888886 54443322


Q ss_pred             ---hCCCCCcEEEEccccc
Q 030274          150 ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y  165 (180)
                         ...++.|++|.+--+.
T Consensus        84 ~~~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           84 FIKTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHHHSSCCEEEECCCCC
T ss_pred             HHHHhCCCCCEEEECCccc
Confidence               1235799999887553

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.05  E-value=0.33  Score=37.75  Aligned_cols=47  Identities=17%  Similarity=0.378  Sum_probs=36.0

Q ss_pred             hCCCCCCCCeEEEeCC-c-CChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGS-G-VGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~-G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||=.|+ | .|..++.+++ .|++|++++.+++-++.+++
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS  202 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            4445567889999997 3 4777777776 48899999998887777765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.01  E-value=0.46  Score=35.10  Aligned_cols=85  Identities=22%  Similarity=0.259  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec--CCCchhhHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW--GNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  147 (180)
                      ++++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+       ..++.+...+.  .+.+....+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~   82 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-------GRQPQWFILDLLTCTSENCQQL   82 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------SCCCEEEECCTTTCCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------CCCceEEEEecccCCHHHHHHH
Confidence            577899999987653   333455568999999999887777766665543       11345666776  444433333


Q ss_pred             Hh---hCCCCCcEEEEcccc
Q 030274          148 IQ---KYPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~---~~~~~fD~Ii~~d~~  164 (180)
                      ..   ...++.|++|.+--+
T Consensus        83 ~~~~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           83 AQRIAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHHHHHCSCCSEEEECCCC
T ss_pred             HHHHHHhCCCCCEEEECCcc
Confidence            22   223589999987654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.00  E-value=0.23  Score=37.04  Aligned_cols=86  Identities=13%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+       ..++.....|..+.+....+..
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dv~~~~~v~~~~~   80 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-------SGKVIGVQTDVSDRAQCDALAG   80 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-------SSCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-------CCcEEEEEcCCCCHHHHHHHHH
Confidence            467889988876653   333455568999999999887777666665442       1356677888887765554432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+++.+--+.
T Consensus        81 ~~~~~~g~id~lvnnAg~~   99 (262)
T 3pk0_A           81 RAVEEFGGIDVVCANAGVF   99 (262)
T ss_dssp             HHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHhCCCCEEEECCCCC
Confidence            1   224799999886543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.99  E-value=0.42  Score=35.89  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=54.6

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+.
T Consensus        20 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~~~~~v~~~~   90 (277)
T 2rhc_B           20 QDSEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--------VEADGRTCDVRSVPEIEALV   90 (277)
T ss_dssp             TTSCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEECCCCCHHHHHHHH
Confidence            36778999998655 3443    44568999999999877766655555432        24566777877766554443


Q ss_pred             h---hCCCCCcEEEEcccc
Q 030274          149 Q---KYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~  164 (180)
                      .   ...+++|++|.+--+
T Consensus        91 ~~~~~~~g~iD~lv~~Ag~  109 (277)
T 2rhc_B           91 AAVVERYGPVDVLVNNAGR  109 (277)
T ss_dssp             HHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            2   123579999887643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.98  E-value=0.094  Score=41.40  Aligned_cols=44  Identities=18%  Similarity=0.154  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-+|+|. |..++.+|+ .|++|+++|.+++-++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            445788999999975 777777776 47899999999887777764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.96  E-value=0.39  Score=37.32  Aligned_cols=46  Identities=22%  Similarity=0.343  Sum_probs=35.0

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.... ++.+||-+|+|. |..++.+++ .|+ +|+++|.+++-++.+++
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            34455 888999999964 666666666 477 99999999887777653

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.92  E-value=0.21  Score=37.56  Aligned_cols=85  Identities=9%  Similarity=0.072  Sum_probs=56.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~d~~~v~~~~~   95 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG--------HDAEAVAFDVTSESEIIEAFA   95 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--------CCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHH
Confidence            467889999876653   333455568999999999887777766665543        245566667776655444332


Q ss_pred             ---hCCCCCcEEEEccccc
Q 030274          150 ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y  165 (180)
                         ...++.|+++.+--+.
T Consensus        96 ~~~~~~g~iD~lv~nAg~~  114 (271)
T 4ibo_A           96 RLDEQGIDVDILVNNAGIQ  114 (271)
T ss_dssp             HHHHHTCCCCEEEECCCCC
T ss_pred             HHHHHCCCCCEEEECCCCC
Confidence               2235799999886543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.92  E-value=0.12  Score=41.27  Aligned_cols=31  Identities=19%  Similarity=0.209  Sum_probs=23.9

Q ss_pred             CCeEEEeCCcCChHHHHHhhc-------------------CCeEEEecCC
Q 030274           75 ASSILELGSGVGVTGILCSRF-------------------CREVLLTDHN  105 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~-------------------~~~V~~~D~~  105 (180)
                      ..+|+|+||++|..++.+...                   ..+|+..|..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            468999999999888865542                   1468899986

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.91  E-value=0.26  Score=36.14  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec--CCCchhhH
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW--GNSDQINK  146 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~--~~~~~~~~  146 (180)
                      ..+++++|=.|++.|+   ++..+++.|++|++++.++..++.+.+.+...+       ..+..+...+.  .+.+....
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~d~d~~~~~~~~~   83 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-------QPQPLIIALNLENATAQQYRE   83 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------SCCCEEEECCTTTCCHHHHHH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-------CCCceEEEeccccCCHHHHHH
Confidence            4578899988886653   233445568999999999988877777766553       12344555555  44333333


Q ss_pred             HHh---hCCCCCcEEEEccccc
Q 030274          147 IIQ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       147 ~~~---~~~~~fD~Ii~~d~~y  165 (180)
                      +..   ...++.|++|.+--+.
T Consensus        84 ~~~~~~~~~g~id~lv~nAg~~  105 (247)
T 3i1j_A           84 LAARVEHEFGRLDGLLHNASII  105 (247)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHhCCCCCEEEECCccC
Confidence            322   1224799999887543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.91  E-value=0.32  Score=36.36  Aligned_cols=86  Identities=20%  Similarity=0.281  Sum_probs=56.6

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...+++||=.|++.|+   ++..+++.|++|++++. ++...+.+.+.++..+        .++.+...|..+.+....+
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~   97 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG--------YKAAVIKFDAASESDFIEA   97 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--------CceEEEECCCCCHHHHHHH
Confidence            3578899999987664   33345556899999998 5566666666555543        3466777787776655444


Q ss_pred             Hhh---CCCCCcEEEEccccc
Q 030274          148 IQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ...   ..++.|++|.+--+.
T Consensus        98 ~~~~~~~~g~id~li~nAg~~  118 (271)
T 4iin_A           98 IQTIVQSDGGLSYLVNNAGVV  118 (271)
T ss_dssp             HHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHhcCCCCEEEECCCcC
Confidence            321   224799999887543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.88  E-value=0.51  Score=37.56  Aligned_cols=44  Identities=18%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=+|+|. |..++.+|+. |+ +|+++|.+++-++.+++
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            455788999999975 7777777764 77 99999999988877764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.82  E-value=1.1  Score=34.88  Aligned_cols=96  Identities=8%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcC-------C-CCC------CCCCcEEEEEee
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTS-------S-ENP------NSDAGLAVAKLE  137 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~-------~-~~~------~~~~~~~~~~~~  137 (180)
                      +...|+.||||....+..+...  +..++-+|. |++++.-++.+...+.       . ...      ....+......+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4568999999999888877763  457888888 7888877777666420       0 000      012456677777


Q ss_pred             cCCCchhhHHHhhC--CCCCcEEEEccccccCCch
Q 030274          138 WGNSDQINKIIQKY--PGGFDLILGADIYILYNRS  170 (180)
Q Consensus       138 ~~~~~~~~~~~~~~--~~~fD~Ii~~d~~y~~~~~  170 (180)
                      ..+.+.+..++...  ...+.++++--++++-...
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~  210 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNN  210 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH
Confidence            77654433322222  2456777777776654333

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=93.81  E-value=0.37  Score=36.03  Aligned_cols=85  Identities=13%  Similarity=0.166  Sum_probs=56.3

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC------------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN------------EEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ..++++|=-|++.|+   ++..+++.|++|+++|.+            ++.++.+.+.+...+        .++.....|
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D   82 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--------SRIVARQAD   82 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--------CCEEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--------CeEEEEeCC
Confidence            477899999987653   333455668999999976            555555555555443        346677888


Q ss_pred             cCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          138 WGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       138 ~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..+.+.+..+...   ..++.|++|.+--+.
T Consensus        83 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           83 VRDRESLSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             TTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            8877655544321   124799999887544

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.81  E-value=0.35  Score=36.25  Aligned_cols=85  Identities=13%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC------------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN------------EEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      .++++||=-|++.|+   ++..+++.|++|+++|.+            ...++.+...+...+        .++.....|
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D   79 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--------RKAYTAEVD   79 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--------SCEEEEECC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--------CceEEEEcc
Confidence            467899999987664   333455668999999987            555666655555443        346677888


Q ss_pred             cCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          138 WGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       138 ~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..+.+.+..+...   ..++.|++|.+--+.
T Consensus        80 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (287)
T 3pxx_A           80 VRDRAAVSRELANAVAEFGKLDVVVANAGIC  110 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            8877655444321   124799999887553

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.79  E-value=0.36  Score=36.74  Aligned_cols=85  Identities=13%  Similarity=0.215  Sum_probs=56.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC------------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN------------EEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.+            ++.++.+...+...+        .++.....|
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D   97 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--------RRIIASQVD   97 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--------CCEEEEECC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--------CceEEEECC
Confidence            467899999987764   333455679999999986            555555555554443        346677888


Q ss_pred             cCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          138 WGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       138 ~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..+.+.+..+...   ..++.|++|.|--+.
T Consensus        98 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A           98 VRDFDAMQAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            8877655544321   225799999876543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=93.79  E-value=0.41  Score=35.62  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=58.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+....      ...++.....|..+.+....+..
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dv~~~~~v~~~~~   79 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF------PGARLFASVCDVLDALQVRAFAE   79 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS------TTCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------CCceEEEEeCCCCCHHHHHHHHH
Confidence            467889999987764   333455568999999999887777776665521      12236677778877665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+++.+--+.
T Consensus        80 ~~~~~~g~id~lvnnAg~~   98 (265)
T 3lf2_A           80 ACERTLGCASILVNNAGQG   98 (265)
T ss_dssp             HHHHHHCSCSEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   235789999887543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.79  E-value=0.15  Score=38.41  Aligned_cols=85  Identities=14%  Similarity=0.267  Sum_probs=57.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~d~~~v~~~~~  101 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--------GKALPIRCDVTQPDQVRGMLD  101 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--------CCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEcCCCCHHHHHHHHH
Confidence            467899999987653   333455568999999999887777766665543        245667778877765554432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus       102 ~~~~~~g~iD~lvnnAg~~  120 (276)
T 3r1i_A          102 QMTGELGGIDIAVCNAGIV  120 (276)
T ss_dssp             HHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   124799999876543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.78  E-value=0.28  Score=36.96  Aligned_cols=84  Identities=6%  Similarity=0.060  Sum_probs=55.7

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+...
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~d~~~v~~~~~~   94 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--------HDVDGSSCDVTSTDEVHAAVAA   94 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEECCCCCHHHHHHHHHH
Confidence            56789999987653   333455568999999999887777666665443        3466777788777655444321


Q ss_pred             ---CCCCCcEEEEccccc
Q 030274          151 ---YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~y  165 (180)
                         ..++.|++|.+--+.
T Consensus        95 ~~~~~g~id~lv~nAg~~  112 (279)
T 3sju_A           95 AVERFGPIGILVNSAGRN  112 (279)
T ss_dssp             HHHHHCSCCEEEECCCCC
T ss_pred             HHHHcCCCcEEEECCCCC
Confidence               225789999876543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.77  E-value=0.25  Score=37.05  Aligned_cols=84  Identities=12%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|++++.++..++.+...+...+        .++.....|..+.+.+..+..
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~   97 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG--------LEGRGAVLNVNDATAVDALVE   97 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT--------CCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEEeCCCHHHHHHHHH
Confidence            467789988876653   333455668999999999887777777766654        235566777777665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        98 ~~~~~~g~iD~lvnnAg~  115 (270)
T 3ftp_A           98 STLKEFGALNVLVNNAGI  115 (270)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   22479999988654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.76  E-value=0.37  Score=37.47  Aligned_cols=41  Identities=22%  Similarity=0.392  Sum_probs=32.4

Q ss_pred             CCCeEEEe-CCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           74 QASSILEL-GSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        74 ~~~~vLdl-G~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ++.+||=. |+|. |..++.+++ .|++|++++.+++-++.+++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  193 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK  193 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            67899999 4554 777777776 47899999999887777765

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.72  E-value=0.19  Score=39.05  Aligned_cols=46  Identities=15%  Similarity=0.114  Sum_probs=34.2

Q ss_pred             hCCCCCCCCeEEEeCC-c-CChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           68 KNPDVLQASSILELGS-G-VGVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~-G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      +.....++++||-.|+ | .|...+.+++ .|++|++++.+++-++.++
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~  197 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK  197 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            3444557889999997 3 4766666665 5889999999987776665

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.70  E-value=0.094  Score=40.28  Aligned_cols=46  Identities=13%  Similarity=-0.009  Sum_probs=35.9

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||=+|+|. |..++.+|+. |++|++++ +++-++.+++
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH
Confidence            445556889999999965 7777777764 88999999 8877777754

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.68  E-value=0.27  Score=37.22  Aligned_cols=84  Identities=12%  Similarity=0.114  Sum_probs=55.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+        .++.....|..+.+....+..
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~d~~~v~~~~~   97 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--------GQAIALEADVSDELQMRNAVR   97 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            367789999987664   333455568999999999877776666554332        346677788877665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        98 ~~~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A           98 DLVLKFGHLDIVVANAGI  115 (283)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            1   23579999987654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.67  E-value=0.27  Score=36.99  Aligned_cols=83  Identities=12%  Similarity=0.081  Sum_probs=56.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+        .++.....|..+.+....+..
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~  102 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--------GTAQELAGDLSEAGAGTDLIE  102 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--------CCEEEEECCTTSTTHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------CeEEEEEecCCCHHHHHHHHH
Confidence            367889998877653   333455568999999998877766666665543        346677778877765544432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         .. ++.|++|.+--+
T Consensus       103 ~~~~~-g~iD~lvnnAg~  119 (275)
T 4imr_A          103 RAEAI-APVDILVINASA  119 (275)
T ss_dssp             HHHHH-SCCCEEEECCCC
T ss_pred             HHHHh-CCCCEEEECCCC
Confidence               12 689999987754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.63  E-value=0.12  Score=40.72  Aligned_cols=47  Identities=13%  Similarity=0.190  Sum_probs=36.0

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-+|+|. |..++.+|+. |+ +|+++|.+++-++.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            444455788999999875 7777777764 76 89999999887777653

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.61  E-value=0.36  Score=36.33  Aligned_cols=84  Identities=13%  Similarity=0.205  Sum_probs=55.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC----------------HHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN----------------EEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~----------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      ..++++|=-|++.|+   ++..+++.|++|+++|.+                ++.++.+...+...+        .++..
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~   80 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--------RRIVT   80 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--------CCEEE
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--------CceEE
Confidence            467899999998764   334455679999999986                555555544444332        35667


Q ss_pred             EEeecCCCchhhHHHhh---CCCCCcEEEEcccc
Q 030274          134 AKLEWGNSDQINKIIQK---YPGGFDLILGADIY  164 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...|..+.+.+..+...   ..++.|++|.+--+
T Consensus        81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            78888877655544321   22479999988754

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=93.61  E-value=0.26  Score=37.23  Aligned_cols=85  Identities=20%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+       ...+.....|..+.+....+..
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~  103 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-------GNIVRAVVCDVGDPDQVAALFA  103 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------SSCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CCeEEEEEcCCCCHHHHHHHHH
Confidence            467889998887653   233345568999999999887777666665443       1124567788887765544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus       104 ~~~~~~g~iD~lvnnAG~  121 (281)
T 4dry_A          104 AVRAEFARLDLLVNNAGS  121 (281)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   22578999987654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.59  E-value=0.37  Score=36.14  Aligned_cols=85  Identities=13%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-------------CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDH-------------NEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-------------~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+++|.             +++.++.+.+.+...+        .++.....
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~   84 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--------RKALTRVL   84 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--------CCEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--------CeEEEEEc
Confidence            477899999987764   33345566899999997             5666666655555443        34667777


Q ss_pred             ecCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          137 EWGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       137 ~~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      |..+.+.+..+...   ..++.|++|.+--+.
T Consensus        85 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  116 (280)
T 3pgx_A           85 DVRDDAALRELVADGMEQFGRLDVVVANAGVL  116 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            88877655544321   234799999886543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.56  E-value=0.43  Score=35.75  Aligned_cols=85  Identities=14%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-------------CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDH-------------NEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-------------~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      +.++++|=-|++.|+   ++..+++.|++|+++|.             +++.++.+.+.+...+        .++.....
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~   80 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--------RRIVAAVV   80 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--------CCEEEEEC
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--------CeEEEEEC
Confidence            467899999987764   33345567999999997             5665665555555443        34667777


Q ss_pred             ecCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          137 EWGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       137 ~~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      |..+.+.+..+...   ..++.|++|.+--+.
T Consensus        81 D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  112 (277)
T 3tsc_A           81 DTRDFDRLRKVVDDGVAALGRLDIIVANAGVA  112 (277)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            88777655544322   125799999887543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.55  E-value=0.44  Score=35.77  Aligned_cols=85  Identities=9%  Similarity=0.146  Sum_probs=55.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.++.+...++.+...+....       ..++.....|..+.+....+..
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~   97 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-------GRRCLPLSMDVRAPPAVMAAVD   97 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-------SSCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-------CCcEEEEEcCCCCHHHHHHHHH
Confidence            478899999987664   333455568999999999876665555543321       1346677788887765544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        98 ~~~~~~g~id~lv~nAg~  115 (277)
T 4fc7_A           98 QALKEFGRIDILINCAAG  115 (277)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCcC
Confidence            1   22579999987643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.55  E-value=0.1  Score=40.97  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             CCCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           70 PDVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ....++.+||-+|+|. |..++.+|+ .|++|+++|.+++-++.+++
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            3455788999999965 777777776 48899999998877777764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.54  E-value=0.28  Score=36.48  Aligned_cols=84  Identities=14%  Similarity=0.192  Sum_probs=54.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   76 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--------VEARSYVCDVTSEEAVIGTVD   76 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--------SCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHHH
Confidence            367789988886653   223344568999999999877766655554332        246667778777655444332


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        77 ~~~~~~g~id~lv~nAg~   94 (262)
T 1zem_A           77 SVVRDFGKIDFLFNNAGY   94 (262)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence            1   12479999987643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.46  E-value=0.72  Score=34.95  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             CCCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=-|++.  |+   ++..+++.|++|++++.++...+.+++..+..+         ++.+...|..+.+.+..+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~Dv~d~~~v~~~   99 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---------AFVAGHCDVADAASIDAV   99 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---------CEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---------CceEEECCCCCHHHHHHH
Confidence            4778999999863  33   344556678999999998765555555444432         355677788877655544


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|++|.+--+
T Consensus       100 ~~~~~~~~g~iD~lVnnAG~  119 (293)
T 3grk_A          100 FETLEKKWGKLDFLVHAIGF  119 (293)
T ss_dssp             HHHHHHHTSCCSEEEECCCC
T ss_pred             HHHHHHhcCCCCEEEECCcc
Confidence            321   23579999987654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.43  E-value=0.38  Score=30.61  Aligned_cols=70  Identities=23%  Similarity=0.393  Sum_probs=44.2

Q ss_pred             CCeEEEeCCcCChHHHHHh----hcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           75 ASSILELGSGVGVTGILCS----RFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la----~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++|+=+|+  |.+|..++    +.| .+|+++|.++..++.++    ..+          +.....+..+.+.+...  
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~~----------~~~~~~d~~~~~~~~~~--   66 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RMG----------VATKQVDAKDEAGLAKA--   66 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TTT----------CEEEECCTTCHHHHHHH--
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hCC----------CcEEEecCCCHHHHHHH--
Confidence            468999998  55555444    457 79999999987665544    121          33555566554433333  


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                        ...+|+|+.+-+.
T Consensus        67 --~~~~d~vi~~~~~   79 (118)
T 3ic5_A           67 --LGGFDAVISAAPF   79 (118)
T ss_dssp             --TTTCSEEEECSCG
T ss_pred             --HcCCCEEEECCCc
Confidence              2478998887654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.38  E-value=0.13  Score=40.26  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-+|+|. |+.++.+|+ .|+ +|+++|.+++-++.+++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            345788999999875 777777776 477 99999999887777653

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=93.34  E-value=0.7  Score=34.98  Aligned_cols=84  Identities=21%  Similarity=0.343  Sum_probs=58.3

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCC---eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCR---EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~---~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      .++++|=-|++.|+ |..    +++.|+   +|+.++.+.+.++.+.+.+....      ...++.....|..+.+.+..
T Consensus        32 ~~k~~lVTGas~GI-G~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dv~d~~~v~~  104 (287)
T 3rku_A           32 AKKTVLITGASAGI-GKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEF------PNAKVHVAQLDITQAEKIKP  104 (287)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC------TTCEEEEEECCTTCGGGHHH
T ss_pred             CCCEEEEecCCChH-HHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhC------CCCeEEEEECCCCCHHHHHH
Confidence            67899999987664 443    344465   99999999988887777666542      12356677888888777666


Q ss_pred             HHhhC---CCCCcEEEEcccc
Q 030274          147 IIQKY---PGGFDLILGADIY  164 (180)
Q Consensus       147 ~~~~~---~~~fD~Ii~~d~~  164 (180)
                      +....   .++.|++|.+--+
T Consensus       105 ~~~~~~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          105 FIENLPQEFKDIDILVNNAGK  125 (287)
T ss_dssp             HHHTSCGGGCSCCEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCc
Confidence            55432   2478999987654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=93.34  E-value=0.48  Score=35.25  Aligned_cols=86  Identities=17%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +.++++|=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+....      ...++.....|..+.+.+..+..
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~   84 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA------PDAEVLTTVADVSDEAQVEAYVT   84 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC------TTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------CCceEEEEEccCCCHHHHHHHHH
Confidence            367889999986553   233345568999999999877766655554431      01246667777777665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        85 ~~~~~~g~id~lv~nAg~  102 (267)
T 1iy8_A           85 ATTERFGRIDGFFNNAGI  102 (267)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            1   12478999987543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.32  E-value=0.46  Score=36.48  Aligned_cols=46  Identities=13%  Similarity=0.133  Sum_probs=33.7

Q ss_pred             CCCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           69 NPDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      .....++++||-.|+  |.|...+.+++ .|++|+++|.+++.++.+++
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            344557889999994  34666665554 58899999999887777764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.31  E-value=0.37  Score=37.83  Aligned_cols=41  Identities=27%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             CCCeEEEeC-CcC-ChHHHHHhhc--CCeEEEecCCHHHHHHHHH
Q 030274           74 QASSILELG-SGV-GVTGILCSRF--CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        74 ~~~~vLdlG-~G~-G~~~l~la~~--~~~V~~~D~~~~~l~~~~~  114 (180)
                      ++.+||=.| +|. |..++.+|+.  +++|+++|.+++-++.+++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~  215 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS  215 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            577999998 665 8888888874  6899999999887777754

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=93.30  E-value=0.39  Score=35.91  Aligned_cols=82  Identities=13%  Similarity=0.188  Sum_probs=53.8

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++++|==|++.|+   ++..+++.|++|+.+|.+..  +.+.+.++..+        .++.....|..+.+......
T Consensus         6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--------~~~~~~~~Dv~d~~~v~~~~   75 (247)
T 4hp8_A            6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--------GNASALLIDFADPLAAKDSF   75 (247)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--------CCEEEEECCTTSTTTTTTSS
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--------CcEEEEEccCCCHHHHHHHH
Confidence            3578899999998874   45566777999999998742  22333344443        34566777777765544332


Q ss_pred             hhCCCCCcEEEEccccc
Q 030274          149 QKYPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y  165 (180)
                        ..++.|+++.|--+.
T Consensus        76 --~~g~iDiLVNNAGi~   90 (247)
T 4hp8_A           76 --TDAGFDILVNNAGII   90 (247)
T ss_dssp             --TTTCCCEEEECCCCC
T ss_pred             --HhCCCCEEEECCCCC
Confidence              246799998876443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.30  E-value=0.1  Score=41.18  Aligned_cols=48  Identities=15%  Similarity=0.171  Sum_probs=36.6

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILK  113 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~  113 (180)
                      +.+.....++.+||=+|+|. |+.++.+|+. |+ +|+++|.+++-++.++
T Consensus       185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~  235 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK  235 (378)
T ss_dssp             HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            33444556788999999975 7777777764 76 8999999888777665

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.28  E-value=0.15  Score=40.26  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-+|+|. |..++.+|+. |+ +|+++|.+++-++.+++
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            334455788999999875 7777777764 77 89999999887777653

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.27  E-value=0.49  Score=34.99  Aligned_cols=83  Identities=13%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+....+.
T Consensus        12 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~   82 (260)
T 2zat_A           12 LENKVALVTASTDG-IGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG--------LSVTGTVCHVGKAEDRERLV   82 (260)
T ss_dssp             TTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHH
Confidence            46778998887654 3444    44568999999998876666555554432        23556677777665544432


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|++|.+--+
T Consensus        83 ~~~~~~~g~iD~lv~~Ag~  101 (260)
T 2zat_A           83 AMAVNLHGGVDILVSNAAV  101 (260)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            21   12479999887543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.26  E-value=0.52  Score=34.66  Aligned_cols=82  Identities=11%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++||=.|++.| +|..+    ++.|++|++++.++..++.+.+.+...+        .++.+...|..+.+.+.....
T Consensus        12 ~~k~vlItGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~   82 (260)
T 3awd_A           12 DNRVAIVTGGAQN-IGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--------HDVSSVVMDVTNTESVQNAVR   82 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEecCCCHHHHHHHHH
Confidence            5778998887544 45444    4458999999998876665555554432        246677777777655544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..+++|+|+.+--+
T Consensus        83 ~~~~~~~~id~vi~~Ag~  100 (260)
T 3awd_A           83 SVHEQEGRVDILVACAGI  100 (260)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   12478999887643

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=93.26  E-value=0.41  Score=35.37  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+......     ..++.+...|..+.+....+...
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~   80 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKH-----VQEPIVLPLDITDCTKADTEIKD   80 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTT-----SCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccc-----cCcceEEeccCCCHHHHHHHHHH
Confidence            57789999987664   33345556899999999998887777666554210     13456777888876655444321


Q ss_pred             ---CCCCCcEEEEccccc
Q 030274          151 ---YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~y  165 (180)
                         ..++.|++|.+--+.
T Consensus        81 ~~~~~g~iD~lvnnAg~~   98 (250)
T 3nyw_A           81 IHQKYGAVDILVNAAAMF   98 (250)
T ss_dssp             HHHHHCCEEEEEECCCCC
T ss_pred             HHHhcCCCCEEEECCCcC
Confidence               225799999887554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=93.22  E-value=0.3  Score=38.38  Aligned_cols=82  Identities=23%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhh---cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSR---FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +..+||=|||  |.+|-.+++   ...+|+..|.+...++.++.+               +....++..+.+.+..+   
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~---------------~~~~~~d~~d~~~l~~~---   74 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEF---------------ATPLKVDASNFDKLVEV---   74 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTT---------------SEEEECCTTCHHHHHHH---
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcc---------------CCcEEEecCCHHHHHHH---
Confidence            4458999998  555554443   247899999988766554321               23455666555444443   


Q ss_pred             CCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          151 YPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                       -.+.|+||.+=+.|.  +..+.+++++
T Consensus        75 -~~~~DvVi~~~p~~~--~~~v~~~~~~   99 (365)
T 3abi_A           75 -MKEFELVIGALPGFL--GFKSIKAAIK   99 (365)
T ss_dssp             -HTTCSEEEECCCGGG--HHHHHHHHHH
T ss_pred             -HhCCCEEEEecCCcc--cchHHHHHHh
Confidence             246899888765543  2344444443

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.20  E-value=0.32  Score=36.54  Aligned_cols=87  Identities=14%  Similarity=0.192  Sum_probs=57.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +.+++||=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+.     ...++.+...|..+.+....+..
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~   83 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA-----NGGAIRYEPTDITNEDETARAVD   83 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC-----SSCEEEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCceEEEEeCCCCCHHHHHHHHH
Confidence            367889999986653   3334555689999999998877777666655431     11256677778777665544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+--+
T Consensus        84 ~~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           84 AVTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence            1   22578999987654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.18  E-value=0.19  Score=33.77  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=27.7

Q ss_pred             CeEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHHH
Q 030274           76 SSILELGSGV-GV-TGILCSRFCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        76 ~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~~  114 (180)
                      .+|+=+|+|. |. ++..+.+.|.+|+++|.+++.++.+++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~   48 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE   48 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence            4788888865 42 233444568999999999988776654

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.17  E-value=0.6  Score=34.85  Aligned_cols=84  Identities=15%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHH-HHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNI-EHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++|=.|++.|+   ++..+++.|++|++++.++..++.+.+.+ ...+        .++.....|..+.+.+..+.
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--------~~~~~~~~Dl~~~~~v~~~~   90 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--------VETMAFRCDVSNYEEVKKLL   90 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--------CeEEEEEcCCCCHHHHHHHH
Confidence            467889999876553   23334456899999999887666655554 2222        23556677777765554433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|++|.+--+
T Consensus        91 ~~~~~~~g~iD~lvnnAg~  109 (267)
T 1vl8_A           91 EAVKEKFGKLDTVVNAAGI  109 (267)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCc
Confidence            21   12479999987644

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=93.15  E-value=0.19  Score=38.00  Aligned_cols=81  Identities=11%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++||=-|++.|+   ++..+++.|++|++++.++...+.+.+.+           ..++.+...|..+.+.+..+..
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~~Dl~d~~~v~~~~~   82 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----------AGQVEVRELDLQDLSSVRRFAD   82 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----------SSEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----------cCCeeEEEcCCCCHHHHHHHHH
Confidence            477899999887653   23334556899999999887555443322           1356777888887766666554


Q ss_pred             hCCCCCcEEEEccccc
Q 030274          150 KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y  165 (180)
                      .. ++.|++|.+--+.
T Consensus        83 ~~-~~iD~lv~nAg~~   97 (291)
T 3rd5_A           83 GV-SGADVLINNAGIM   97 (291)
T ss_dssp             TC-CCEEEEEECCCCC
T ss_pred             hc-CCCCEEEECCcCC
Confidence            34 5789998876543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.14  E-value=0.18  Score=38.11  Aligned_cols=85  Identities=19%  Similarity=0.253  Sum_probs=55.3

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +.++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+...+...+        .++.....|..+.+....+..
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~   77 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG--------GEAAALAGDVGDEALHEALVE   77 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT--------CCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEECCCCCHHHHHHHHH
Confidence            367889998987663   333455568999999999887776665554332        345566667776655444432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        78 ~~~~~~g~iD~lvnnAg~~   96 (280)
T 3tox_A           78 LAVRRFGGLDTAFNNAGAL   96 (280)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   224799999886543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.09  E-value=0.16  Score=39.93  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=35.7

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-+|+|. |..++.+|+ .|+ +|+++|.+++-++.+++
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            334455788999999875 777777776 476 89999999887777653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.07  E-value=0.44  Score=36.18  Aligned_cols=83  Identities=13%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ..++++|=.|++.  |+   ++..+++.|++|++++.++...+.+++..+..+         .+.....|..+.+.+..+
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~Dv~d~~~v~~~   98 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---------VKLTVPCDVSDAESVDNM   98 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---------CCEEEECCTTCHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---------CeEEEEcCCCCHHHHHHH
Confidence            4678999999864  43   344556679999999998766555555444443         244667788777655544


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|++|.+--+
T Consensus        99 ~~~~~~~~g~iD~lVnnAG~  118 (296)
T 3k31_A           99 FKVLAEEWGSLDFVVHAVAF  118 (296)
T ss_dssp             HHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHcCCCCEEEECCCc
Confidence            332   12579999987644

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.05  E-value=0.7  Score=34.07  Aligned_cols=81  Identities=23%  Similarity=0.315  Sum_probs=51.8

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      ++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+...+        .++.....|..+.+.+..+.. 
T Consensus         2 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~   72 (256)
T 1geg_A            2 KKVALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--------GHAVAVKVDVSDRDQVFAAVEQ   72 (256)
T ss_dssp             CCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHHHH
Confidence            356788887654 4444    44568999999999876666655554432        245667778777665544432 


Q ss_pred             --hCCCCCcEEEEcccc
Q 030274          150 --KYPGGFDLILGADIY  164 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~  164 (180)
                        ...+++|++|.+--+
T Consensus        73 ~~~~~g~id~lv~nAg~   89 (256)
T 1geg_A           73 ARKTLGGFDVIVNNAGV   89 (256)
T ss_dssp             HHHHTTCCCEEEECCCC
T ss_pred             HHHHhCCCCEEEECCCC
Confidence              123579999987643

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=93.05  E-value=0.1  Score=42.03  Aligned_cols=45  Identities=7%  Similarity=-0.022  Sum_probs=37.1

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC---Ce----EEEecCCHHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRFC---RE----VLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~---~~----V~~~D~~~~~l~~~~~n~~~  118 (180)
                      +..+|+||.||.|..++.+.+.|   .-    |.++|.++.+++..+.|...
T Consensus         9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A            9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            34599999999999888887766   23    78899999999998888754

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=93.02  E-value=0.47  Score=36.43  Aligned_cols=85  Identities=13%  Similarity=0.155  Sum_probs=55.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC------------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN------------EEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ..++++|=-|++.|+   ++..+++.|++|+++|.+            ++.++.+.+.+...+        .++.+...|
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D  115 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--------RRIIARQAD  115 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--------CCEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--------CeEEEEECC
Confidence            467889999987664   333455668999999876            555555544444443        346677788


Q ss_pred             cCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          138 WGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       138 ~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..+.+.+..+...   ..++.|++|.+--+.
T Consensus       116 v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~  146 (317)
T 3oec_A          116 VRDLASLQAVVDEALAEFGHIDILVSNVGIS  146 (317)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            8877655544321   225799999886543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=93.01  E-value=0.46  Score=35.15  Aligned_cols=83  Identities=17%  Similarity=0.181  Sum_probs=52.6

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++.| +|..+    ++.|++|++++.++..++.+...+...+        .++.....|..+.+.+..+.
T Consensus        12 l~~k~vlITGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~   82 (266)
T 1xq1_A           12 LKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--------FQVTGSVCDASLRPEREKLM   82 (266)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeeEEEECCCCCHHHHHHHH
Confidence            35678988887554 45444    4458999999998876666655554432        23556667777655444443


Q ss_pred             hh----CCCCCcEEEEcccc
Q 030274          149 QK----YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~----~~~~fD~Ii~~d~~  164 (180)
                      ..    ..+++|++|.+--+
T Consensus        83 ~~~~~~~~~~id~li~~Ag~  102 (266)
T 1xq1_A           83 QTVSSMFGGKLDILINNLGA  102 (266)
T ss_dssp             HHHHHHHTTCCSEEEEECCC
T ss_pred             HHHHHHhCCCCcEEEECCCC
Confidence            21    12578999877543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.00  E-value=0.47  Score=35.68  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++.| +|..    +++.|.+|++++.++..++.+...+...+       ..++.+...|..+.+.+..+.
T Consensus        26 ~~~k~vlITGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~v~~~~   97 (286)
T 1xu9_A           26 LQGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-------AASAHYIAGTMEDMTFAEQFV   97 (286)
T ss_dssp             GTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-------CSEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-------CCceEEEeCCCCCHHHHHHHH
Confidence            36778998887654 4444    44468999999999887776665554432       124566777777665444433


Q ss_pred             hh---CCCCCcEEEEc
Q 030274          149 QK---YPGGFDLILGA  161 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~  161 (180)
                      ..   ..+++|++|.+
T Consensus        98 ~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           98 AQAGKLMGGLDMLILN  113 (286)
T ss_dssp             HHHHHHHTSCSEEEEC
T ss_pred             HHHHHHcCCCCEEEEC
Confidence            21   12479999977

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.97  E-value=0.17  Score=39.72  Aligned_cols=47  Identities=17%  Similarity=0.210  Sum_probs=35.7

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-+|+|. |..++.+|+ .|+ +|+++|.+++-++.+++
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            344455788999999875 777777776 477 89999999887777763

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=92.97  E-value=0.39  Score=35.42  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=53.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|++++.++..++.+.+.+...           ......|..+.+....+..
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------~~~~~~Dv~d~~~v~~~~~   75 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDN-----------GKGMALNVTNPESIEAVLK   75 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-----------EEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccc-----------ceEEEEeCCCHHHHHHHHH
Confidence            367889999987653   33345556899999999987766655544332           4456777777665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+++.+--+.
T Consensus        76 ~~~~~~g~iD~lv~nAg~~   94 (248)
T 3op4_A           76 AITDEFGGVDILVNNAGIT   94 (248)
T ss_dssp             HHHHHHCCCSEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   224799999886543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=92.94  E-value=0.18  Score=39.63  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           74 QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      ++.+||=+|+|. |..++.+++ .|++|++++.+++-++.++
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL  228 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            678999999864 666666665 4789999999887666554

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.92  E-value=0.22  Score=38.64  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-+|+|. |...+.+++ .|++|+++|.+++-++.+++
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            345788999999964 666666665 47899999999887777653

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.85  E-value=0.33  Score=36.47  Aligned_cols=85  Identities=18%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+...+.     ...++.+...|..+.+.+..+..
T Consensus         5 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~   78 (280)
T 1xkq_A            5 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV-----SEKQVNSVVADVTTEDGQDQIIN   78 (280)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-----CGGGEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcceEEEEecCCCHHHHHHHHH
Confidence            5678888887655 3443    445689999999998777666555544320     00146677788887765544432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.+--+
T Consensus        79 ~~~~~~g~iD~lv~nAg~   96 (280)
T 1xkq_A           79 STLKQFGKIDVLVNNAGA   96 (280)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence            1   12478999987654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=92.82  E-value=0.64  Score=34.41  Aligned_cols=83  Identities=11%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+... +        .++.....|..+.+.+..+.
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--------~~~~~~~~D~~~~~~~~~~~   76 (263)
T 3ai3_A            6 SGKVAVITGSSSG-IGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG--------VRVLEVAVDVATPEGVDAVV   76 (263)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--------CCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHH
Confidence            5778998887655 3443    4456899999999887666655555432 2        23566777877766554443


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|+++.+--+.
T Consensus        77 ~~~~~~~g~id~lv~~Ag~~   96 (263)
T 3ai3_A           77 ESVRSSFGGADILVNNAGTG   96 (263)
T ss_dssp             HHHHHHHSSCSEEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCC
Confidence            21   124789999876543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.81  E-value=0.49  Score=35.41  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=54.1

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++||=.|++.| +|..+    ++.|++|++++.++..++.+...+...+      ...++.+...|..+.+.+..+.
T Consensus        30 l~~k~vlVTGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~v~~~~  102 (279)
T 1xg5_A           30 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG------YPGTLIPYRCDLSNEEDILSMF  102 (279)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CSSEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC------CCceEEEEEecCCCHHHHHHHH
Confidence            36778998887554 44444    4458999999999877766665555443      1124556677777766554433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+||.+--+
T Consensus       103 ~~~~~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          103 SAIRSQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHhCCCCCEEEECCCC
Confidence            21   12479999887643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.80  E-value=0.51  Score=35.29  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=-|++.|+   ++..+++.|++|+.++. ++..++.+.+.+...+        .++.....|..+.+.+..+.
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~d~~~v~~~~   97 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG--------GEAFAVKADVSQESEVEALF   97 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--------CcEEEEECCCCCHHHHHHHH
Confidence            467889988887653   33345566899999988 6666666666555543        34667778888776555443


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|++|.+--+.
T Consensus        98 ~~~~~~~g~id~lv~nAg~~  117 (269)
T 4dmm_A           98 AAVIERWGRLDVLVNNAGIT  117 (269)
T ss_dssp             HHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCC
Confidence            21   224799999886543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.80  E-value=0.39  Score=35.59  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+.           .++.....|..+.+....+..
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~   74 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----------PRVHALRSDIADLNEIAVLGA   74 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------GGEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------CcceEEEccCCCHHHHHHHHH
Confidence            467899999987664   333455568999999999877666655432           135667777777665544322


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|+++.+--+
T Consensus        75 ~~~~~~g~id~lv~nAg~   92 (255)
T 4eso_A           75 AAGQTLGAIDLLHINAGV   92 (255)
T ss_dssp             HHHHHHSSEEEEEECCCC
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence               123578999887644

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.76  E-value=0.63  Score=35.02  Aligned_cols=86  Identities=9%  Similarity=0.195  Sum_probs=55.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++|=-|++.|+   ++..+++.|++|++++. +++.++.+.+.+....       ..++.....|..+.+.+..+.
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~   95 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-------SGTVLHHPADMTKPSEIADMM   95 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-------SSCEEEECCCTTCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-------CCcEEEEeCCCCCHHHHHHHH
Confidence            367789999987663   33345556899999998 5666666555554331       234666777777766554443


Q ss_pred             h---hCCCCCcEEEEccccc
Q 030274          149 Q---KYPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~y  165 (180)
                      .   ...++.|++|.+--+.
T Consensus        96 ~~~~~~~g~iD~lv~nAg~~  115 (281)
T 3v2h_A           96 AMVADRFGGADILVNNAGVQ  115 (281)
T ss_dssp             HHHHHHTSSCSEEEECCCCC
T ss_pred             HHHHHHCCCCCEEEECCCCC
Confidence            2   1235799999886543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=92.71  E-value=0.19  Score=39.05  Aligned_cols=43  Identities=9%  Similarity=0.071  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-c--CCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-F--CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~--~~~V~~~D~~~~~l~~~~~  114 (180)
                      .. ++.+||-+|+|. |..++.+|+ .  |++|+++|.+++-++.+++
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            45 788999999975 777777776 5  8899999999887777764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=92.68  E-value=1.1  Score=32.45  Aligned_cols=83  Identities=11%  Similarity=0.149  Sum_probs=53.3

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (180)
                      ++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+....       ..++.+...|..+.+.+..+.. 
T Consensus         2 ~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~   73 (235)
T 3l77_A            2 MKVAVITGASRG-IGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-------GVEVFYHHLDVSKAESVEEFSKK   73 (235)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------CCCEEEEECCTTCHHHHHHHCC-
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------CCeEEEEEeccCCHHHHHHHHHH
Confidence            467888887655 3444    44568999999999887777666654221       1346677778777665544321 


Q ss_pred             --hCCCCCcEEEEccccc
Q 030274          150 --KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 --~~~~~fD~Ii~~d~~y  165 (180)
                        ...++.|++|.+--+.
T Consensus        74 ~~~~~g~id~li~~Ag~~   91 (235)
T 3l77_A           74 VLERFGDVDVVVANAGLG   91 (235)
T ss_dssp             HHHHHSSCSEEEECCCCC
T ss_pred             HHHhcCCCCEEEECCccc
Confidence              1124799999887543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=92.60  E-value=0.2  Score=39.12  Aligned_cols=44  Identities=23%  Similarity=0.452  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||-+|+|. |..++.+++ .|++|+++|.+++-++.+++
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            344788999999875 777777776 47889999999887777753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.60  E-value=0.21  Score=39.30  Aligned_cols=47  Identities=23%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             hCCCCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.....++.+||-+|+|. |..++.+|+ .|+ +|+++|.+++-++.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            334455788999999875 777777776 476 89999999887777653

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=92.59  E-value=0.72  Score=34.52  Aligned_cols=85  Identities=13%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC------------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN------------EEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.+            .+.++.....+...+        .++.....|
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D   79 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--------RRCISAKVD   79 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--------CCEEEEECC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC--------CeEEEEeCC
Confidence            467899999987663   333455568999999986            444555444444433        346677788


Q ss_pred             cCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          138 WGNSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       138 ~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..+.+....+...   ..++.|++|.+--+.
T Consensus        80 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (281)
T 3s55_A           80 VKDRAALESFVAEAEDTLGGIDIAITNAGIS  110 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            8877655544321   224799999877543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.59  E-value=0.54  Score=34.81  Aligned_cols=81  Identities=21%  Similarity=0.277  Sum_probs=52.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|++.|+   ++..+++.|++|+++|.+++.++.+...+   +        .++.....|..+.+....+..
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~v~~~~~   74 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--------PAAYAVQMDVTRQDSIDAAIA   74 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------TTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CCceEEEeeCCCHHHHHHHHH
Confidence            367889999976553   23345556899999999887665554433   1        135567777777665544432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|+++.+--+
T Consensus        75 ~~~~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           75 ATVEHAGGLDILVNNAAL   92 (259)
T ss_dssp             HHHHHSSSCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCc
Confidence               123479999988654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.58  E-value=0.25  Score=38.39  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc--CCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF--CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~--~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=+|+|. |..++.+|+.  +.+|+++|.+++-++.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            345788999999976 8888877764  6899999999987777764

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=92.55  E-value=0.28  Score=36.84  Aligned_cols=84  Identities=11%  Similarity=0.066  Sum_probs=56.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+.+..+.+++- ...+        .++.....|..+.+....+..
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~-~~~~--------~~~~~~~~Dv~~~~~v~~~v~   75 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDAL-AQRQ--------PRATYLPVELQDDAQCRDAVA   75 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHH-HHHC--------TTCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHH-HhcC--------CCEEEEEeecCCHHHHHHHHH
Confidence            478899999998875   4556677799999999877554444332 2222        245567788887765554432


Q ss_pred             ---hCCCCCcEEEEccccc
Q 030274          150 ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y  165 (180)
                         ...++.|+++.|--+.
T Consensus        76 ~~~~~~G~iDiLVNnAGi~   94 (258)
T 4gkb_A           76 QTIATFGRLDGLVNNAGVN   94 (258)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHhCCCCEEEECCCCC
Confidence               1236899999886543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.55  E-value=0.16  Score=39.47  Aligned_cols=45  Identities=24%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             CCCCCCCCeEEEeCCcC-ChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           69 NPDVLQASSILELGSGV-GVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~G~-G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      .... ++.+||-+|+|. |..++.+|+ .|+ +|+++|.+++-++.+++
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  207 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP  207 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4455 888999999964 777777776 477 99999999876666544

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.52  E-value=0.29  Score=38.28  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             CCCCCCCeEEEeCCcC-ChHHHHHhh-c-CCeEEEecCCHHHHHHHH
Q 030274           70 PDVLQASSILELGSGV-GVTGILCSR-F-CREVLLTDHNEEVLKILK  113 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~-G~~~l~la~-~-~~~V~~~D~~~~~l~~~~  113 (180)
                      ....++.+||=+|+|. |..++.+|+ . |++|+++|.+++-++.++
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~  228 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE  228 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            3445788999999974 666666666 5 889999999988777765

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=92.51  E-value=0.26  Score=37.56  Aligned_cols=86  Identities=14%  Similarity=0.199  Sum_probs=56.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++||=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+...+       ..++.....|..+.+....+..
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dv~d~~~v~~~~~  111 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-------AGNVIGVRLDVSDPGSCADAAR  111 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-------SSCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-------CCcEEEEEEeCCCHHHHHHHHH
Confidence            467889988887653   333455568999999999877666655554332       1356677788887765544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus       112 ~~~~~~g~iD~lvnnAg~~  130 (293)
T 3rih_A          112 TVVDAFGALDVVCANAGIF  130 (293)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   235789999886543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.51  E-value=0.31  Score=38.46  Aligned_cols=46  Identities=17%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             CCC-CCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHH
Q 030274           69 NPD-VLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKK  114 (180)
Q Consensus        69 ~~~-~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~  114 (180)
                      ... ..++.+||-+|+|. |..++.+|+. | .+|++++.+++-++.+++
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            344 55788999999775 7777777764 7 599999999887777763

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.50  E-value=0.94  Score=34.12  Aligned_cols=84  Identities=17%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++.| +|..    +++.|++|++++.++..++.+.+.+....       ..++.+...|..+.+.+....
T Consensus        24 l~~k~vlITGasgg-iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dl~~~~~~~~~~   95 (302)
T 1w6u_A           24 FQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-------GNKVHAIQCDVRDPDMVQNTV   95 (302)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------SSCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-------CCceEEEEeCCCCHHHHHHHH
Confidence            46778998887654 4444    44568999999999876666555554431       124667777887766554433


Q ss_pred             h---hCCCCCcEEEEcccc
Q 030274          149 Q---KYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~  164 (180)
                      .   ...+++|+||.+--+
T Consensus        96 ~~~~~~~g~id~li~~Ag~  114 (302)
T 1w6u_A           96 SELIKVAGHPNIVINNAAG  114 (302)
T ss_dssp             HHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            2   123578999987653

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.46  E-value=0.59  Score=35.54  Aligned_cols=86  Identities=19%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+...+.     ...++.+...|..+.+.+..+.
T Consensus        24 l~~k~vlVTGas~g-IG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~   97 (297)
T 1xhl_A           24 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV-----PAEKINAVVADVTEASGQDDII   97 (297)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----CGGGEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCceEEEEecCCCCHHHHHHHH
Confidence            36778988887655 3444    445689999999998777666655554320     0014667778888766554443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|++|.+--+
T Consensus        98 ~~~~~~~g~iD~lvnnAG~  116 (297)
T 1xhl_A           98 NTTLAKFGKIDILVNNAGA  116 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCc
Confidence            21   12479999987654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=92.42  E-value=0.2  Score=36.37  Aligned_cols=77  Identities=10%  Similarity=0.159  Sum_probs=50.9

Q ss_pred             eEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           77 SILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      +||=.|++.|+   ++..+++.|++|++++.+++.++.+...+   +        .++.....|..+.+.+..+......
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~v~~~~~~~~~   71 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL---S--------NNVGYRARDLASHQEVEQLFEQLDS   71 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC---S--------SCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred             EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---h--------hccCeEeecCCCHHHHHHHHHHHhh
Confidence            57777876553   22334456899999999987666554432   1        2345677788877766666655566


Q ss_pred             CCcEEEEcccc
Q 030274          154 GFDLILGADIY  164 (180)
Q Consensus       154 ~fD~Ii~~d~~  164 (180)
                      .+|+++.+--+
T Consensus        72 ~~d~lv~~Ag~   82 (230)
T 3guy_A           72 IPSTVVHSAGS   82 (230)
T ss_dssp             CCSEEEECCCC
T ss_pred             cCCEEEEeCCc
Confidence            67999887654

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=92.41  E-value=0.76  Score=37.05  Aligned_cols=92  Identities=13%  Similarity=0.058  Sum_probs=55.9

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChH-----HHHHhhcCCeEEEecCCHHH------------HHHHHHHHHHhcCCCCC
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVT-----GILCSRFCREVLLTDHNEEV------------LKILKKNIEHHTSSENP  125 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~-----~l~la~~~~~V~~~D~~~~~------------l~~~~~n~~~n~~~~~~  125 (180)
                      .+|.........++++|=.|++.|+-     +..+++.|++|++++.+...            .+.+++-++..+     
T Consensus        48 i~y~~~~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----  122 (418)
T 4eue_A           48 IDYCKKAIGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKG-----  122 (418)
T ss_dssp             HHHHHHSCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHhccCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcC-----
Confidence            34555555556788999999988741     22233448999999875422            233333333333     


Q ss_pred             CCCCcEEEEEeecCCCchhhHHHh---hCCCCCcEEEEcc
Q 030274          126 NSDAGLAVAKLEWGNSDQINKIIQ---KYPGGFDLILGAD  162 (180)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~Ii~~d  162 (180)
                         .++.....|..+.+....+..   ...++.|++|.|-
T Consensus       123 ---~~~~~~~~Dvtd~~~v~~~v~~i~~~~G~IDiLVnNA  159 (418)
T 4eue_A          123 ---LVAKNFIEDAFSNETKDKVIKYIKDEFGKIDLFVYSL  159 (418)
T ss_dssp             ---CCEEEEESCTTCHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ---CcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence               245667778887765544432   2346899999763

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=92.36  E-value=1.1  Score=34.67  Aligned_cols=55  Identities=13%  Similarity=0.075  Sum_probs=33.3

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCCh---HHHHHhhcCC-eEEEecCC---HHHHHHHHHHHH
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGV---TGILCSRFCR-EVLLTDHN---EEVLKILKKNIE  117 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~---~~l~la~~~~-~V~~~D~~---~~~l~~~~~n~~  117 (180)
                      +..-|.+.....+++++|=+|+| |.   +...+++.|. +|+.++.+   .+-.+.+.+.+.
T Consensus       141 f~~~L~~~~~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~  202 (315)
T 3tnl_A          141 YMRALKEAGHDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKIN  202 (315)
T ss_dssp             HHHHHHHTTCCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhh
Confidence            33344443333578899999997 42   3334556676 89999988   554444444443

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=92.33  E-value=0.48  Score=34.67  Aligned_cols=82  Identities=11%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++||=.|++ |.+|..++    +.|++|++++.++..++.+.+.+...+        .++.....|..+.+.+.....
T Consensus        10 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~   80 (255)
T 1fmc_A           10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--------GQAFACRCDITSEQELSALAD   80 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC--------CceEEEEcCCCCHHHHHHHHH
Confidence            56788888864 44555444    458999999999877666665555432        245666777776655544332


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..+++|+||.+--+
T Consensus        81 ~~~~~~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           81 FAISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHHHSSCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence            1   12478999887644

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.33  E-value=0.19  Score=39.37  Aligned_cols=45  Identities=29%  Similarity=0.446  Sum_probs=36.1

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CCe-EEEecCCHHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CRE-VLLTDHNEEVLKILKKN  115 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~~-V~~~D~~~~~l~~~~~n  115 (180)
                      ...++.+||=+|+|. |..++.+|+. |++ |+++|.+++-++.+++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            345788999999975 7777777774 775 99999999988888764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.29  E-value=0.6  Score=34.59  Aligned_cols=85  Identities=12%  Similarity=0.092  Sum_probs=55.9

Q ss_pred             CCCCeEEEeCCc--CCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSG--VGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G--~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=.|++  .|+   ++..+++.|++|++++.+....+.+++-.+..+       ..++.+...|..+.+.+..+
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~   77 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-------RNDSIILPCDVTNDAEIETC   77 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-------SCCCEEEECCCSSSHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-------CCCceEEeCCCCCHHHHHHH
Confidence            367889999986  454   344556679999999988765555555444432       12466788888887766554


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|+++.+--+
T Consensus        78 ~~~~~~~~g~id~li~~Ag~   97 (266)
T 3oig_A           78 FASIKEQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHhCCeeEEEEcccc
Confidence            332   22478998887643

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=92.27  E-value=0.53  Score=34.53  Aligned_cols=82  Identities=13%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++|=.|++.| +|..    +++.|++|++++. ++..++.+.+.+...+        .++.....|..+.+.+..+.
T Consensus         3 ~~k~vlVTGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~   73 (246)
T 2uvd_A            3 KGKVALVTGASRG-IGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG--------SDAIAVRADVANAEDVTNMV   73 (246)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHH
Confidence            5678888887654 4444    4456899999998 7766666555554432        24566677777766554443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|+++.+--+
T Consensus        74 ~~~~~~~g~id~lv~nAg~   92 (246)
T 2uvd_A           74 KQTVDVFGQVDILVNNAGV   92 (246)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            21   12479999987644

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=92.17  E-value=0.61  Score=34.08  Aligned_cols=79  Identities=13%  Similarity=0.134  Sum_probs=52.0

Q ss_pred             CCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           75 ASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        75 ~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      ++++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+..           ++.....|..+.+.+..+... 
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~v~~~~~~~   71 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN-----------AVIGIVADLAHHEDVDVAFAAA   71 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----------GEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-----------CceEEECCCCCHHHHHHHHHHH
Confidence            5678888887653   3334555689999999998777666554421           256677788776655444321 


Q ss_pred             --CCCCCcEEEEcccc
Q 030274          151 --YPGGFDLILGADIY  164 (180)
Q Consensus       151 --~~~~fD~Ii~~d~~  164 (180)
                        ..++.|+++.+--+
T Consensus        72 ~~~~g~id~lvnnAg~   87 (235)
T 3l6e_A           72 VEWGGLPELVLHCAGT   87 (235)
T ss_dssp             HHHHCSCSEEEEECCC
T ss_pred             HHhcCCCcEEEECCCC
Confidence              23578999887654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.15  E-value=0.45  Score=37.09  Aligned_cols=45  Identities=13%  Similarity=0.128  Sum_probs=32.2

Q ss_pred             CCCCCC--CeEEEeCC-c-CChHHHHHhh-cCC-eEEEecCCHHHHHHHHH
Q 030274           70 PDVLQA--SSILELGS-G-VGVTGILCSR-FCR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~--~~vLdlG~-G-~G~~~l~la~-~~~-~V~~~D~~~~~l~~~~~  114 (180)
                      ....++  ++||=.|+ | .|...+.+++ .|+ +|++++.+++-++.+++
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~  204 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTS  204 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            344467  89999998 3 3666665555 577 99999999876666553

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=92.12  E-value=0.17  Score=37.72  Aligned_cols=80  Identities=11%  Similarity=0.255  Sum_probs=56.6

Q ss_pred             CCCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      +.++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++..              ...++.....|..+.+....+
T Consensus         7 dlf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~--------------~~~~~~~~~~Dv~~~~~v~~~   72 (242)
T 4b79_A            7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP--------------RHPRIRREELDITDSQRLQRL   72 (242)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC--------------CCTTEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh--------------hcCCeEEEEecCCCHHHHHHH
Confidence            45689999999998875   4555667799999999986533211              123566778888887777666


Q ss_pred             HhhCCCCCcEEEEccccc
Q 030274          148 IQKYPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y  165 (180)
                      .... ++.|+++.|-=+.
T Consensus        73 ~~~~-g~iDiLVNNAGi~   89 (242)
T 4b79_A           73 FEAL-PRLDVLVNNAGIS   89 (242)
T ss_dssp             HHHC-SCCSEEEECCCCC
T ss_pred             HHhc-CCCCEEEECCCCC
Confidence            5544 5899998876443

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=92.11  E-value=0.66  Score=35.07  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEec-CCHHHHHHHHHHHH-HhcCCCCCCCCCcEEEEEeecCCCc-----
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTD-HNEEVLKILKKNIE-HHTSSENPNSDAGLAVAKLEWGNSD-----  142 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D-~~~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~~~~~~~-----  142 (180)
                      .++++|=.|++.| +|..    +++.|++|++++ .+++.++.+.+.+. ..+        .++.....|..+.+     
T Consensus         8 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~--------~~~~~~~~Dl~~~~~~~~~   78 (291)
T 1e7w_A            8 TVPVALVTGAAKR-LGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--------NSAITVQADLSNVATAPVS   78 (291)
T ss_dssp             CCCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--------TCEEEEECCCSSSCBCCCC
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC--------CeeEEEEeecCCccccccc
Confidence            5678888887665 3443    445689999999 88877776666554 222        24667777877766     


Q ss_pred             ------------hhhHHHhh---CCCCCcEEEEccccc
Q 030274          143 ------------QINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       143 ------------~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                                  .+..+...   ..+++|++|.+--+.
T Consensus        79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~  116 (291)
T 1e7w_A           79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF  116 (291)
T ss_dssp             ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence                        54443321   124799999887543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=92.10  E-value=0.48  Score=35.59  Aligned_cols=83  Identities=10%  Similarity=0.093  Sum_probs=51.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++||=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+...+         ++.+...|..+.+.+..+..
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------~~~~~~~Dv~d~~~v~~~~~   97 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---------DCQAIPADLSSEAGARRLAQ   97 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS---------CEEECCCCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---------ceEEEEeeCCCHHHHHHHHH
Confidence            467889999876553   223344568999999998876655544433211         35555667766555444332


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|++|.+--+
T Consensus        98 ~~~~~~g~iD~lvnnAg~  115 (276)
T 2b4q_A           98 ALGELSARLDILVNNAGT  115 (276)
T ss_dssp             HHHHHCSCCSEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence               123579999987643

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=92.06  E-value=0.38  Score=35.47  Aligned_cols=82  Identities=16%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+...+   +        .++.....|..+.+....+..
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~Dv~~~~~v~~~~~   72 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G--------KKARAIAADISDPGSVKALFA   72 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--------TTEEECCCCTTCHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CceEEEEcCCCCHHHHHHHHH
Confidence            467899999987653   33345556899999999987666554433   2        235566677776655544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        73 ~~~~~~g~id~lv~nAg~~   91 (247)
T 3rwb_A           73 EIQALTGGIDILVNNASIV   91 (247)
T ss_dssp             HHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHCCCCCEEEECCCCC
Confidence            1   224799999877543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=92.02  E-value=0.52  Score=34.78  Aligned_cols=82  Identities=12%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=.|++.|+   ++..+++.|++|++++.++..++.+.+.+   +        .++.....|..+.+....+..
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~~~~~~~   75 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---G--------DAALAVAADISKEADVDAAVE   75 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------TTEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C--------CceEEEEecCCCHHHHHHHHH
Confidence            367789999987664   33345556899999999987666655433   1        236677788877665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        76 ~~~~~~g~id~li~~Ag~~   94 (261)
T 3n74_A           76 AALSKFGKVDILVNNAGIG   94 (261)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHhcCCCCEEEECCccC
Confidence            1   124789999886543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=91.99  E-value=0.35  Score=37.56  Aligned_cols=45  Identities=16%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             CCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           70 PDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      ....++++||-.|+  |.|...+.+++ .|++|+++|.+++.++.+++
T Consensus       165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            34557889999998  34666665555 58899999988876666553

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=91.95  E-value=0.86  Score=33.68  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=.|++.| +|..    +++.|++|++++.+++.++.+.+.+....      ...++.+...|..+.+.+.....
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~   78 (260)
T 2z1n_A            6 QGKLAVVTAGSSG-LGFASALELARNGARLLLFSRNREKLEAAASRIASLV------SGAQVDIVAGDIREPGDIDRLFE   78 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS------TTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCeEEEEEccCCCHHHHHHHHH
Confidence            5678998887655 3443    44568999999999876666555554320      01136667778877665544432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...+ .|+++.+--+
T Consensus        79 ~~~~~~g-id~lv~~Ag~   95 (260)
T 2z1n_A           79 KARDLGG-ADILVYSTGG   95 (260)
T ss_dssp             HHHHTTC-CSEEEECCCC
T ss_pred             HHHHhcC-CCEEEECCCC
Confidence               1224 8999987654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.93  E-value=0.83  Score=35.58  Aligned_cols=46  Identities=22%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             hCCCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           68 KNPDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      +.....++++||-.|+  |.|...+.+++ .|++|+++|.+++-++.++
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~  204 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE  204 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            3344557889999984  34666665555 5789999999988777764

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=91.86  E-value=0.47  Score=35.05  Aligned_cols=85  Identities=16%  Similarity=0.318  Sum_probs=54.2

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhh---cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGV---TGILCSR---FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      +++++|=.|++.|+   ++..+++   .|++|++++.+++.++.+.+.+....      ...++.....|..+.+.+..+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dv~~~~~v~~~   78 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ------PDLKVVLAAADLGTEAGVQRL   78 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC------TTSEEEEEECCTTSHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhC------CCCeEEEEecCCCCHHHHHHH
Confidence            56788888877653   3334555   68999999999877776666554431      012466677788776655544


Q ss_pred             Hhh-----CCCCCc--EEEEcccc
Q 030274          148 IQK-----YPGGFD--LILGADIY  164 (180)
Q Consensus       148 ~~~-----~~~~fD--~Ii~~d~~  164 (180)
                      ...     ..+++|  ++|.+--+
T Consensus        79 ~~~~~~~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           79 LSAVRELPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             HHHHHHSCCCTTCCEEEEEECCCC
T ss_pred             HHHHHhccccccCCccEEEECCcc
Confidence            332     234678  87776543

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=91.84  E-value=0.16  Score=44.11  Aligned_cols=41  Identities=24%  Similarity=0.139  Sum_probs=34.2

Q ss_pred             CeEEEeCCcCChHHHHHhhcC-------CeEEEecCCHHHHHHHHHHH
Q 030274           76 SSILELGSGVGVTGILCSRFC-------REVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~-------~~V~~~D~~~~~l~~~~~n~  116 (180)
                      .+||||.||.|-+++-+.+.|       .-+.++|.++.+++..+.|.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            489999999998877666544       35789999999999999985

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=91.82  E-value=0.51  Score=35.32  Aligned_cols=78  Identities=17%  Similarity=0.113  Sum_probs=52.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=.|++.|+   ++..+++.|++|+++|.+++.++.+.+.+   +        .++.+...|..+.+.+..+..
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~---~--------~~~~~~~~Dl~~~~~v~~~~~   96 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---G--------NRAEFVSTNVTSEDSVLAAIE   96 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------TTEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---C--------CceEEEEcCCCCHHHHHHHHH
Confidence            367789999987663   33344556899999999987666655543   1        246677888887766555433


Q ss_pred             h--CCCCCcEEEEc
Q 030274          150 K--YPGGFDLILGA  161 (180)
Q Consensus       150 ~--~~~~fD~Ii~~  161 (180)
                      .  ..++.|+++.+
T Consensus        97 ~~~~~~~id~lv~~  110 (281)
T 3ppi_A           97 AANQLGRLRYAVVA  110 (281)
T ss_dssp             HHTTSSEEEEEEEC
T ss_pred             HHHHhCCCCeEEEc
Confidence            2  23467888877

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.73  E-value=0.8  Score=33.94  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEe-cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLT-DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~-D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +++++|=-|++.|+   ++..+++.|++|+.+ +.++..++.+.+.+...+        .++.....|..+.+.+..+..
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~   74 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG--------VKVLVVKANVGQPAKIKEMFQ   74 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence            46788888876653   333445568999987 788776666666555432        346677788887765554432


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|++|.+--
T Consensus        75 ~~~~~~g~id~lv~nAg   91 (258)
T 3oid_A           75 QIDETFGRLDVFVNNAA   91 (258)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            2   2257899998764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=91.71  E-value=0.79  Score=33.85  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             CCCCCeEEEeCCc-CChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           72 VLQASSILELGSG-VGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        72 ~~~~~~vLdlG~G-~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ..++++||=.|++ +|.+|..    +++.|++|++++.+....+.+++-.+..+         ++.+...|..+.+.+..
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~v~~   81 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---------SELVFPCDVADDAQIDA   81 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---------CCCEEECCTTCHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---------CcEEEECCCCCHHHHHH
Confidence            4578899999985 2334444    44568999999988655555554444432         24467778887765554


Q ss_pred             HHhh---CCCCCcEEEEcccc
Q 030274          147 IIQK---YPGGFDLILGADIY  164 (180)
Q Consensus       147 ~~~~---~~~~fD~Ii~~d~~  164 (180)
                      +...   ..++.|++|.+--+
T Consensus        82 ~~~~~~~~~g~id~lv~nAg~  102 (271)
T 3ek2_A           82 LFASLKTHWDSLDGLVHSIGF  102 (271)
T ss_dssp             HHHHHHHHCSCEEEEEECCCC
T ss_pred             HHHHHHHHcCCCCEEEECCcc
Confidence            4321   23579999987654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.71  E-value=0.48  Score=35.66  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=54.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+   +        .++.....|..+.+....+..
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~Dv~d~~~v~~~~~   95 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--------CGAAACRVDVSDEQQIIAMVD   95 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--------SSCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--------CcceEEEecCCCHHHHHHHHH
Confidence            467899999987764   33445567899999999987666555443   2        235567778877665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        96 ~~~~~~g~iD~lvnnAg~~  114 (277)
T 3gvc_A           96 ACVAAFGGVDKLVANAGVV  114 (277)
T ss_dssp             HHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   224799999887543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.56  E-value=0.43  Score=35.41  Aligned_cols=83  Identities=17%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEe-cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLT-DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~-D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..++++|=-|++.|+   ++..+++.|++|+.+ +.++...+.+...++..+        .++.....|..+.+....+.
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~   77 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--------RSALAIKADLTNAAEVEAAI   77 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--------SCCEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHH
Confidence            467899999987764   333455568999998 666666666655555433        24567778888776555443


Q ss_pred             hh---CCCCCcEEEEccc
Q 030274          149 QK---YPGGFDLILGADI  163 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~  163 (180)
                      ..   ..++.|+++.+--
T Consensus        78 ~~~~~~~g~id~lv~nAg   95 (259)
T 3edm_A           78 SAAADKFGEIHGLVHVAG   95 (259)
T ss_dssp             HHHHHHHCSEEEEEECCC
T ss_pred             HHHHHHhCCCCEEEECCC
Confidence            21   1247899998764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=91.55  E-value=0.54  Score=36.66  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=30.5

Q ss_pred             CeEEEeCCcC-ChHH-HHHh-h-cCCe-EEEecCCHH---HHHHHH
Q 030274           76 SSILELGSGV-GVTG-ILCS-R-FCRE-VLLTDHNEE---VLKILK  113 (180)
Q Consensus        76 ~~vLdlG~G~-G~~~-l~la-~-~~~~-V~~~D~~~~---~l~~~~  113 (180)
                      .+||=+|+|. |..+ +.+| + .|++ |+++|.+++   -++.++
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~  219 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE  219 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH
Confidence            8999999965 7777 7777 6 4776 999999887   677665

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=91.55  E-value=0.3  Score=37.83  Aligned_cols=43  Identities=26%  Similarity=0.341  Sum_probs=32.0

Q ss_pred             CCCCCeEEEeCCcC-ChHHHHHhh-c-CCeEEEecCCHHHHHHHHH
Q 030274           72 VLQASSILELGSGV-GVTGILCSR-F-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        72 ~~~~~~vLdlG~G~-G~~~l~la~-~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      ..++.+||=+|+|. |..++.+++ . +.+|+++|.+++-++.+++
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~  206 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK  206 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh
Confidence            44788999999986 555555554 3 6899999999876666553

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=91.51  E-value=0.096  Score=41.45  Aligned_cols=83  Identities=11%  Similarity=0.109  Sum_probs=50.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc------------------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           74 QASSILELGSGVGVTGILCSRF------------------CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~------------------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      +..+|+|+||++|..++.+...                  -.+|+..|......+.+-+++.... ..    ...+ +..
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~----~~~~-f~~  124 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DV----DGVC-FIN  124 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SC----TTCE-EEE
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-cc----CCCE-EEE
Confidence            3458999999999877754432                  1478999998877777776654321 00    0111 222


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..-+.-  ...+  .+..++|+|+++-.++|
T Consensus       125 gvpgSF--y~rl--fp~~S~d~v~Ss~aLHW  151 (359)
T 1m6e_X          125 GVPGSF--YGRL--FPRNTLHFIHSSYSLMW  151 (359)
T ss_dssp             EEESCS--SSCC--SCTTCBSCEEEESCTTB
T ss_pred             ecchhh--hhcc--CCCCceEEEEehhhhhh
Confidence            111111  0011  24679999999999988

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.49  E-value=0.63  Score=34.98  Aligned_cols=82  Identities=17%  Similarity=0.255  Sum_probs=53.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+...+   +        .++.....|..+.+....+..
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~Dv~d~~~v~~~~~   93 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---G--------SKAFGVRVDVSSAKDAESMVE   93 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--------TTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CceEEEEecCCCHHHHHHHHH
Confidence            467899999987664   33345556899999999887655544332   1        235667778777665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        94 ~~~~~~g~iD~lv~nAg~~  112 (277)
T 4dqx_A           94 KTTAKWGRVDVLVNNAGFG  112 (277)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCcC
Confidence            1   124789999886543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=91.46  E-value=0.59  Score=34.87  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             CeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---
Q 030274           76 SSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ---  149 (180)
Q Consensus        76 ~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (180)
                      ++||=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+    .+        .++.....|..+.+....+..   
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~----~~--------~~~~~~~~Dv~~~~~v~~~v~~~~   70 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK----ER--------PNLFYFHGDVADPLTLKKFVEYAM   70 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT----TC--------TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hc--------CCEEEEEecCCCHHHHHHHHHHHH
Confidence            578888888774   445566779999999999875544332    11        245567778877766555432   


Q ss_pred             hCCCCCcEEEEccccc
Q 030274          150 KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y  165 (180)
                      ...++.|+++.|--+.
T Consensus        71 ~~~g~iDiLVNNAG~~   86 (247)
T 3ged_A           71 EKLQRIDVLVNNACRG   86 (247)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCCCEEEECCCCC
Confidence            2236899999877543

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=91.40  E-value=0.45  Score=35.84  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=52.8

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=.|++.|+   ++..+++.|++|+++|.+++.++.+...   .+        .++.....|..+.+....+...
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~~--------~~~~~~~~Dv~~~~~v~~~~~~   72 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA---HG--------GNAVGVVGDVRSLQDQKRAAER   72 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---TB--------TTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH---cC--------CcEEEEEcCCCCHHHHHHHHHH
Confidence            67789999987663   3334555689999999988766554432   11        2466777787776654444321


Q ss_pred             ---CCCCCcEEEEccccc
Q 030274          151 ---YPGGFDLILGADIYI  165 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~y  165 (180)
                         ..++.|++|.+--++
T Consensus        73 ~~~~~g~iD~lvnnAg~~   90 (281)
T 3zv4_A           73 CLAAFGKIDTLIPNAGIW   90 (281)
T ss_dssp             HHHHHSCCCEEECCCCCC
T ss_pred             HHHhcCCCCEEEECCCcC
Confidence               235799999886543

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=91.30  E-value=0.67  Score=34.28  Aligned_cols=82  Identities=9%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHH-HHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEV-LKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~-l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ++++||=.|++.| +|..    +++.|++|++++.++.. ++.+.+.+... +        .++.....|..+.+.+..+
T Consensus         3 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~   73 (260)
T 1x1t_A            3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG--------VKVLYDGADLSKGEAVRGL   73 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT--------SCEEEECCCTTSHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccC--------CcEEEEECCCCCHHHHHHH
Confidence            5678888887655 3444    44568999999988765 65555544432 2        1355666677766554444


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|++|.+--+
T Consensus        74 ~~~~~~~~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           74 VDNAVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             HHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHhcCCCCEEEECCCC
Confidence            321   12479999987644

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=91.29  E-value=1.1  Score=33.25  Aligned_cols=82  Identities=15%  Similarity=0.116  Sum_probs=52.5

Q ss_pred             CCCeEEEeCCcCChHHHH----HhhcCCeEEEecC-CHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCC----ch
Q 030274           74 QASSILELGSGVGVTGIL----CSRFCREVLLTDH-NEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNS----DQ  143 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~-~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~----~~  143 (180)
                      .++++|=.|++.| +|..    +++.|++|++++. +++.++.+.+.+... +        .++.+...|..+.    +.
T Consensus        10 ~~k~~lVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~   80 (276)
T 1mxh_A           10 ECPAAVITGGARR-IGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA--------GSAVLCKGDLSLSSSLLDC   80 (276)
T ss_dssp             -CCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--------TCEEEEECCCSSSTTHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC--------CceEEEeccCCCccccHHH
Confidence            5678888887655 4444    4456899999998 877666665555443 2        2466777888877    55


Q ss_pred             hhHHHhh---CCCCCcEEEEcccc
Q 030274          144 INKIIQK---YPGGFDLILGADIY  164 (180)
Q Consensus       144 ~~~~~~~---~~~~fD~Ii~~d~~  164 (180)
                      +..+...   ..++.|++|.+--+
T Consensus        81 ~~~~~~~~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           81 CEDIIDCSFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCC
Confidence            4443321   12478999988654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=91.29  E-value=1.3  Score=33.20  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=52.9

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++.| +|..+    ++.|.+|++++.++..++.+.+.+...+        .++.....|..+.+.+..+.
T Consensus        42 l~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~d~~~v~~~~  112 (285)
T 2c07_A           42 GENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--------YESSGYAGDVSKKEEISEVI  112 (285)
T ss_dssp             CSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--------CceeEEECCCCCHHHHHHHH
Confidence            35678998887654 44444    4457899999988776665555554332        24566777777766554443


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|+||.+--+
T Consensus       113 ~~~~~~~~~id~li~~Ag~  131 (285)
T 2c07_A          113 NKILTEHKNVDILVNNAGI  131 (285)
T ss_dssp             HHHHHHCSCCCEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            21   23578999988654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=91.29  E-value=0.35  Score=37.81  Aligned_cols=43  Identities=14%  Similarity=0.086  Sum_probs=32.4

Q ss_pred             CCC-CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274           71 DVL-QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        71 ~~~-~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~  113 (180)
                      ... ++.+||=+|+|. |..++.+++ .|++|++++.+++-++.++
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAL  221 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence            344 788999999875 777777776 4889999999887665554

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=91.27  E-value=0.84  Score=33.17  Aligned_cols=78  Identities=18%  Similarity=0.273  Sum_probs=48.4

Q ss_pred             CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++||=.|++.| +|..    +++.|.+|++++.++..++.+.+.+  .          .+.+...|..+.+.+....
T Consensus         5 l~~k~vlITGasgg-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~----------~~~~~~~D~~~~~~~~~~~   71 (244)
T 3d3w_A            5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC--P----------GIEPVCVDLGDWEATERAL   71 (244)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--T----------TCEEEECCTTCHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--C----------CCCEEEEeCCCHHHHHHHH
Confidence            36778998887654 3444    4446899999999876555433321  1          1335567777665555544


Q ss_pred             hhCCCCCcEEEEcccc
Q 030274          149 QKYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~  164 (180)
                      . ..+++|+++.+--+
T Consensus        72 ~-~~~~id~vi~~Ag~   86 (244)
T 3d3w_A           72 G-SVGPVDLLVNNAAV   86 (244)
T ss_dssp             T-TCCCCCEEEECCCC
T ss_pred             H-HcCCCCEEEECCcc
Confidence            3 23478999887643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.22  E-value=0.46  Score=31.20  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=25.1

Q ss_pred             CCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHH
Q 030274           75 ASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~  113 (180)
                      +.+|+=+|+|  .+|..+    ++.|.+|+++|.+++.++.++
T Consensus         4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~   44 (140)
T 1lss_A            4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKAS   44 (140)
T ss_dssp             -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            3578888774  445444    445789999999987665544

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.19  E-value=0.84  Score=34.51  Aligned_cols=83  Identities=14%  Similarity=0.248  Sum_probs=52.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHH-HHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEE-VLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      +++++||=-|++.|+   ++..+++.|++|++++.+.. ..+.+.+-++..+        .++.....|..+.+....+.
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~  116 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--------VKCVLLPGDLSDEQHCKDIV  116 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--------CCEEEEESCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--------CcEEEEECCCCCHHHHHHHH
Confidence            467899999987664   33345556899999998764 3444444333332        34667777887766554443


Q ss_pred             hh---CCCCCcEEEEccc
Q 030274          149 QK---YPGGFDLILGADI  163 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~  163 (180)
                      ..   ..++.|++|.+--
T Consensus       117 ~~~~~~~g~iD~lvnnAg  134 (291)
T 3ijr_A          117 QETVRQLGSLNILVNNVA  134 (291)
T ss_dssp             HHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHcCCCCEEEECCC
Confidence            21   2347999998753

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=91.18  E-value=0.61  Score=34.46  Aligned_cols=81  Identities=16%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHH--HHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEV--LKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~--l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++|=.|++.| +|..    +++.|++|++++.++..  ++.+.+.+...+        .++.....|..+.+.+..+.
T Consensus         2 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~   72 (258)
T 3a28_C            2 SKVAMVTGGAQG-IGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD--------QKAVFVGLDVTDKANFDSAI   72 (258)
T ss_dssp             CCEEEEETTTSH-HHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTT--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHH
Confidence            457888887655 3443    44568999999988765  555444443322        24666777877766554433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..++.|++|.+--+
T Consensus        73 ~~~~~~~g~iD~lv~nAg~   91 (258)
T 3a28_C           73 DEAAEKLGGFDVLVNNAGI   91 (258)
T ss_dssp             HHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            21   12478999987654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=91.16  E-value=1.5  Score=33.10  Aligned_cols=87  Identities=14%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..+++||=.|++. .+|..+    ++.|++|++++.++..++.+.+.+......   ....++.+...|..+.+.+..+.
T Consensus        16 l~~k~vlVTGasg-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~D~~~~~~v~~~~   91 (303)
T 1yxm_A           16 LQGQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP---TKQARVIPIQCNIRNEEEVNNLV   91 (303)
T ss_dssp             TTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT---TCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc---cCCccEEEEecCCCCHHHHHHHH
Confidence            4678899998754 445544    445899999999987777666665542100   01235667778887766554443


Q ss_pred             hh---CCCCCcEEEEccc
Q 030274          149 QK---YPGGFDLILGADI  163 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~  163 (180)
                      ..   ..+++|+||.+--
T Consensus        92 ~~~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           92 KSTLDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHcCCCCEEEECCC
Confidence            21   1247899998764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=91.13  E-value=0.37  Score=37.06  Aligned_cols=85  Identities=15%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC----------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN----------EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~----------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      +.+++||=-|++.|+   ++..+++.|++|+++|.+          ...++.+...+...+        .++.....|..
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~   96 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--------GEAVADGSNVA   96 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--------CEEEEECCCTT
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC--------CcEEEEECCCC
Confidence            467889999987653   333455568999999986          555555555555543        24555666776


Q ss_pred             CCchhhHHHhh---CCCCCcEEEEccccc
Q 030274          140 NSDQINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       140 ~~~~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      +.+.+..+...   ..++.|++|.+--+.
T Consensus        97 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  125 (322)
T 3qlj_A           97 DWDQAAGLIQTAVETFGGLDVLVNNAGIV  125 (322)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            66554443321   124789998877554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=91.12  E-value=1.1  Score=33.56  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=52.5

Q ss_pred             CeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC-
Q 030274           76 SSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY-  151 (180)
Q Consensus        76 ~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (180)
                      +++|=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+...         .++.....|..+.+.+..+.... 
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~~~   92 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---------TRVLPLTLDVRDRAAMSAAVDNLP   92 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---------SCEEEEECCTTCHHHHHHHHHTCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            688988887663   33345556899999999887666554443221         24667778888776665554332 


Q ss_pred             --CCCCcEEEEcccc
Q 030274          152 --PGGFDLILGADIY  164 (180)
Q Consensus       152 --~~~fD~Ii~~d~~  164 (180)
                        .++.|++|.+--+
T Consensus        93 ~~~g~iD~lvnnAG~  107 (272)
T 2nwq_A           93 EEFATLRGLINNAGL  107 (272)
T ss_dssp             GGGSSCCEEEECCCC
T ss_pred             HHhCCCCEEEECCCC
Confidence              2468999987644

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.06  E-value=0.56  Score=32.72  Aligned_cols=40  Identities=20%  Similarity=0.103  Sum_probs=28.0

Q ss_pred             CCCeEEEeCCcC-Ch-HHHHHhhc-CCeEEEecCCHHHHHHHH
Q 030274           74 QASSILELGSGV-GV-TGILCSRF-CREVLLTDHNEEVLKILK  113 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~-~~l~la~~-~~~V~~~D~~~~~l~~~~  113 (180)
                      .+.+|+=+|+|. |. ++..+.+. |.+|+++|.+++.++.++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~   80 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHR   80 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH
Confidence            456899888764 42 23344456 889999999997766554

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=91.00  E-value=1.5  Score=31.83  Aligned_cols=82  Identities=18%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHH-hcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEH-HTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++||=.|++. .+|..++    +.|++|++++.++..++.+...+.. .+        .++.+...|..+.+.+....
T Consensus         6 ~~~~vlVtGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~   76 (248)
T 2pnf_A            6 QGKVSLVTGSTR-GIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG--------VKAHGVEMNLLSEESINKAF   76 (248)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHC--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcC--------CceEEEEccCCCHHHHHHHH
Confidence            567888888754 4455444    4589999999988776666555543 22        23566677777665544433


Q ss_pred             h---hCCCCCcEEEEcccc
Q 030274          149 Q---KYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~  164 (180)
                      .   ...+++|+|+.+--+
T Consensus        77 ~~~~~~~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           77 EEIYNLVDGIDILVNNAGI   95 (248)
T ss_dssp             HHHHHHSSCCSEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            2   123478999887644

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=91.00  E-value=0.63  Score=35.06  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHH-------HHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEE-------VLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~-------~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+++++|=-|++.|+   ++..+++.|++|++++.++.       .++.+.+.+...+        .++.....|..+.+
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~   78 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--------GQALPIVGDIRDGD   78 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--------SEEEEEECCTTSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--------CcEEEEECCCCCHH
Confidence            367889999987763   33345556899999998764       3444444444443        24667777887766


Q ss_pred             hhhHHHhh---CCCCCcEEEEccccc
Q 030274          143 QINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       143 ~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      .+..+...   ..++.|++|.+--+.
T Consensus        79 ~v~~~~~~~~~~~g~id~lvnnAg~~  104 (285)
T 3sc4_A           79 AVAAAVAKTVEQFGGIDICVNNASAI  104 (285)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            55444321   224799999886543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=90.94  E-value=0.99  Score=34.83  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEec-CCHHHHHHHHHHHH-HhcCCCCCCCCCcEEEEEeecCCCc-----
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTD-HNEEVLKILKKNIE-HHTSSENPNSDAGLAVAKLEWGNSD-----  142 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D-~~~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~~~~~~~-----  142 (180)
                      ..++++|=.|++.|+   ++..+++.|++|++++ .+++.++.+.+.+. ..+        .++.+...|..+.+     
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~--------~~~~~~~~Dl~d~~~~~~~  115 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--------NSAITVQADLSNVATAPVS  115 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--------TCEEEEECCCSSSCBCC--
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC--------CeEEEEEeeCCCchhcccc
Confidence            356788888876553   2233445689999999 88877776666554 222        24667778887766     


Q ss_pred             ------------hhhHHHhh---CCCCCcEEEEcccc
Q 030274          143 ------------QINKIIQK---YPGGFDLILGADIY  164 (180)
Q Consensus       143 ------------~~~~~~~~---~~~~fD~Ii~~d~~  164 (180)
                                  .+..+...   ..++.|++|.+--+
T Consensus       116 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~  152 (328)
T 2qhx_A          116 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASS  152 (328)
T ss_dssp             -----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence                        44443321   12479999988754

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=90.93  E-value=0.79  Score=33.70  Aligned_cols=82  Identities=13%  Similarity=0.160  Sum_probs=51.3

Q ss_pred             CCCeEEEeCCcCChHHHHH----hhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           74 QASSILELGSGVGVTGILC----SRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++||=.|++.| +|..+    ++.|++|++++. ++..++.+.+.+...+        .++.+...|..+.+.+..+.
T Consensus         6 ~~k~vlITGasgg-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~   76 (261)
T 1gee_A            6 EGKVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--------GEAIAVKGDVTVESDVINLV   76 (261)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CEEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC--------CceEEEECCCCCHHHHHHHH
Confidence            5678888886544 45544    445899999998 7766665555554432        24556677777665544433


Q ss_pred             hh---CCCCCcEEEEcccc
Q 030274          149 QK---YPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~  164 (180)
                      ..   ..+++|++|.+--+
T Consensus        77 ~~~~~~~g~id~li~~Ag~   95 (261)
T 1gee_A           77 QSAIKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            21   12478999887543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=90.87  E-value=0.85  Score=34.17  Aligned_cols=84  Identities=14%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      +.++++|=-|++.|+   ++..+++.|++|++++.++.. +...+.+...+        .++.....|..+.+....+..
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~   99 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGV-KEVADEIADGG--------GSAEAVVADLADLEGAANVAE   99 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHH-HHHHHHHHTTT--------CEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHH-HHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHHH
Confidence            478899999987663   333455568999999965433 33333333322        346667777777665444321


Q ss_pred             h--CCCCCcEEEEccccc
Q 030274          150 K--YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~--~~~~fD~Ii~~d~~y  165 (180)
                      .  ..++.|++|.+--+.
T Consensus       100 ~~~~~g~iD~lv~nAg~~  117 (273)
T 3uf0_A          100 ELAATRRVDVLVNNAGII  117 (273)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHhcCCCcEEEECCCCC
Confidence            1  125799999886543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=90.82  E-value=0.66  Score=34.41  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++++|=.|++.|+   ++..+++.|++|++++.+++.++.+.+.+..           ++.....|..+.+.+.....
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~v~~~~~   73 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------AARYVHLDVTQPAQWKAAVD   73 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------GEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-----------CceEEEecCCCHHHHHHHHH
Confidence            357789988876653   2233445689999999988665544433221           25566777777655544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+++.+--+.
T Consensus        74 ~~~~~~g~iD~lv~~Ag~~   92 (260)
T 1nff_A           74 TAVTAFGGLHVLVNNAGIL   92 (260)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   124799999876543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.81  E-value=1.2  Score=33.16  Aligned_cols=85  Identities=16%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+.++. +...++.+.+.++..+        .++.....|..+.+.+..+.
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~   87 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--------SDAIAIKADIRQVPEIVKLF   87 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHH
Confidence            477899999987664   33345556899999876 4455666555555543        34667777887766554443


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|++|.+--+.
T Consensus        88 ~~~~~~~g~id~lvnnAg~~  107 (270)
T 3is3_A           88 DQAVAHFGHLDIAVSNSGVV  107 (270)
T ss_dssp             HHHHHHHSCCCEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCC
Confidence            21   224789999876543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=90.75  E-value=0.085  Score=51.58  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=43.9

Q ss_pred             CCCeEEEeCCcCChHHHH-Hhhc------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           74 QASSILELGSGVGVTGIL-CSRF------CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~-la~~------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      +..+|||+|+|+|..... +...      ..+++.||+++...+.+++.++...            +..-.|...+. +.
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d------------i~~~~~d~~~~-~~ 1306 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH------------VTQGQWDPANP-AP 1306 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT------------EEEECCCSSCC-CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc------------ccccccccccc-cc
Confidence            456999999999854332 2221      1379999999888877777765432            23322322110 00


Q ss_pred             HHhhCCCCCcEEEEcccccc
Q 030274          147 IIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       147 ~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +   ....||+||++.+++-
T Consensus      1307 ~---~~~~ydlvia~~vl~~ 1323 (2512)
T 2vz8_A         1307 G---SLGKADLLVCNCALAT 1323 (2512)
T ss_dssp             --------CCEEEEECC---
T ss_pred             C---CCCceeEEEEcccccc
Confidence            0   1347999999998863

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=90.74  E-value=0.53  Score=35.32  Aligned_cols=80  Identities=14%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+.           .++.....|..+.+....+...
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~   95 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------DDALCVPTDVTDPDSVRALFTA   95 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------SCCEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------CCeEEEEecCCCHHHHHHHHHH
Confidence            56788888876653   333455568999999999876665554432           1355677788776655544321


Q ss_pred             ---CCCCCcEEEEcccc
Q 030274          151 ---YPGGFDLILGADIY  164 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~  164 (180)
                         ..++.|++|.+--+
T Consensus        96 ~~~~~g~iD~lVnnAg~  112 (272)
T 4dyv_A           96 TVEKFGRVDVLFNNAGT  112 (272)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence               22479999988654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=90.65  E-value=1.4  Score=34.80  Aligned_cols=65  Identities=12%  Similarity=0.087  Sum_probs=44.7

Q ss_pred             CceecchHH-HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           52 GQLVWPGAM-LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        52 g~~~w~~~~-~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      ...-|+++. .|.+.+...   ..+.+||-++.+-|.++..++..+- ...+| |--....++.|++.|+.
T Consensus        18 ~l~a~da~d~~ll~~~~~~---~~~~~~~~~~d~~gal~~~~~~~~~-~~~~d-s~~~~~~~~~n~~~~~~   83 (375)
T 4dcm_A           18 PLQAWEAADEYLLQQLDDT---EIRGPVLILNDAFGALSCALAEHKP-YSIGD-SYISELATRENLRLNGI   83 (375)
T ss_dssp             SCCSCCHHHHHHHHTTTTC---CCCSCEEEECCSSSHHHHHTGGGCC-EEEES-CHHHHHHHHHHHHHTTC
T ss_pred             CCCccchHHHHHHHhhhhc---cCCCCEEEECCCCCHHHHhhccCCc-eEEEh-HHHHHHHHHHHHHHcCC
Confidence            456799884 444444333   1456899999999999988876532 23345 45566778999999974

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=90.65  E-value=1.5  Score=32.28  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             eEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC--
Q 030274           77 SILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY--  151 (180)
Q Consensus        77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  151 (180)
                      ++|=-|++.|+   ++..+++.|++|++++.+++.++.+.+.+.           .++.....|..+.+.+..+....  
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~~~~   70 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------DNLYIAQLDVRNRAAIEEMLASLPA   70 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------TTEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----------CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            46666765553   333455568999999998876655444331           13566777887766665554322  


Q ss_pred             -CCCCcEEEEcccc
Q 030274          152 -PGGFDLILGADIY  164 (180)
Q Consensus       152 -~~~fD~Ii~~d~~  164 (180)
                       .++.|+++.+--+
T Consensus        71 ~~g~iD~lvnnAg~   84 (248)
T 3asu_A           71 EWCNIDILVNNAGL   84 (248)
T ss_dssp             TTCCCCEEEECCCC
T ss_pred             hCCCCCEEEECCCc
Confidence             3478999887643

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=90.58  E-value=0.68  Score=34.56  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=53.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++||=-|++.|+   ++..+++.|++|+.++.+++.++.+.+.+   +        .++.+...|..+.+....+..
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~Dv~d~~~v~~~~~   93 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---G--------KDVFVFSANLSDRKSIKQLAE   93 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------SSEEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CceEEEEeecCCHHHHHHHHH
Confidence            467889999887653   33344556899999999887665553322   2        246677778777665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|++|.+--+.
T Consensus        94 ~~~~~~g~iD~lvnnAg~~  112 (266)
T 3grp_A           94 VAEREMEGIDILVNNAGIT  112 (266)
T ss_dssp             HHHHHHTSCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   225799999876543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=90.44  E-value=0.79  Score=34.26  Aligned_cols=85  Identities=14%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHH-------HHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEV-------LKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      ++++++|=-|++.|+   ++..+++.|++|++++.+...       ++.+...+...+        .++.....|..+.+
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~   75 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG--------GQGLALKCDIREED   75 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT--------SEEEEEECCTTCHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC--------CeEEEEeCCCCCHH
Confidence            367899999988764   333455668999999987532       344444444432        34667778888776


Q ss_pred             hhhHHHhh---CCCCCcEEEEccccc
Q 030274          143 QINKIIQK---YPGGFDLILGADIYI  165 (180)
Q Consensus       143 ~~~~~~~~---~~~~fD~Ii~~d~~y  165 (180)
                      ....+...   ..++.|++|.+--+.
T Consensus        76 ~v~~~~~~~~~~~g~iD~lvnnAG~~  101 (274)
T 3e03_A           76 QVRAAVAATVDTFGGIDILVNNASAI  101 (274)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcc
Confidence            55544321   225799999887543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=90.43  E-value=1.1  Score=32.43  Aligned_cols=78  Identities=19%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++||=.|++. .+|..+    ++.|++|++++.++..++.+.+..  .          ++.+...|..+.+.+....
T Consensus         5 ~~~~~vlVTGasg-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~----------~~~~~~~D~~~~~~~~~~~   71 (244)
T 1cyd_A            5 FSGLRALVTGAGK-GIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC--P----------GIEPVCVDLGDWDATEKAL   71 (244)
T ss_dssp             CTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--T----------TCEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--c----------CCCcEEecCCCHHHHHHHH
Confidence            3677899888754 444444    445899999999876554333221  1          1345566777665555544


Q ss_pred             hhCCCCCcEEEEcccc
Q 030274          149 QKYPGGFDLILGADIY  164 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~  164 (180)
                      . ..+++|+|+.+--+
T Consensus        72 ~-~~~~id~vi~~Ag~   86 (244)
T 1cyd_A           72 G-GIGPVDLLVNNAAL   86 (244)
T ss_dssp             T-TCCCCSEEEECCCC
T ss_pred             H-HcCCCCEEEECCcc
Confidence            3 23468999987643

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=90.42  E-value=0.9  Score=34.41  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=51.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH--HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE--EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+.++.+.  ...+.+.+.++..+        .++.....|..+.+....+
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~  118 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--------RKAVLLPGDLSDESFARSL  118 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--------CCEEECCCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--------CcEEEEEecCCCHHHHHHH
Confidence            467899999987653   3334555689999999863  34444554444443        2455566676665544443


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|+++.+--+
T Consensus       119 ~~~~~~~~g~iD~lv~nAg~  138 (294)
T 3r3s_A          119 VHKAREALGGLDILALVAGK  138 (294)
T ss_dssp             HHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence            321   23579999988754

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=90.35  E-value=1.3  Score=32.31  Aligned_cols=80  Identities=11%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE-EEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL-AVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  147 (180)
                      ..+++||=.|++.| +|..+    ++.|++|++++.++..++.+.+.+..           ++ .....|..+.+.+...
T Consensus         9 ~~~k~vlITGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~   76 (254)
T 2wsb_A            9 LDGACAAVTGAGSG-IGLEICRAFAASGARLILIDREAAALDRAAQELGA-----------AVAARIVADVTDAEAMTAA   76 (254)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----------GEEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----------cceeEEEEecCCHHHHHHH
Confidence            36778998887644 45444    44589999999988766555444311           23 4566777766554443


Q ss_pred             HhhC--CCCCcEEEEcccc
Q 030274          148 IQKY--PGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~~--~~~fD~Ii~~d~~  164 (180)
                      ....  .+++|++|.+--+
T Consensus        77 ~~~~~~~~~id~li~~Ag~   95 (254)
T 2wsb_A           77 AAEAEAVAPVSILVNSAGI   95 (254)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhhCCCcEEEECCcc
Confidence            2211  2578999987643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=90.34  E-value=1.4  Score=32.21  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      .++++|=-|++.|+   ++..+++.|++|+.++. +++..+.+.+.+...+        .++.....|..+.+....+..
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~   74 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG--------VDSFAIQANVADADEVKAMIK   74 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------SCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            45678888876553   23344556899999887 4455666655555543        345667777777665544432


Q ss_pred             h---CCCCCcEEEEccccc
Q 030274          150 K---YPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y  165 (180)
                      .   ..++.|+++.+--+.
T Consensus        75 ~~~~~~g~id~lv~nAg~~   93 (246)
T 3osu_A           75 EVVSQFGSLDVLVNNAGIT   93 (246)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence            1   224799999887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.75
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.65
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.63
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.63
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.63
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.61
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.61
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.59
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.57
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.56
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.56
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.56
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.55
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.54
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.54
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.53
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.53
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.5
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.49
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.49
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.48
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.46
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.45
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.45
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.42
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.42
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.41
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.41
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.41
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.39
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.39
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.39
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.38
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.35
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.34
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.33
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.33
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.32
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.3
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.3
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.28
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.27
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.27
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.26
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.25
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.25
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.25
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.24
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.2
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.16
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.15
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.14
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.08
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.07
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.05
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.03
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.03
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.02
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.96
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.95
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.94
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.9
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.9
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.89
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.87
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.86
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.72
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.71
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.71
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.67
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.66
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.65
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.61
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.47
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.45
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.44
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.36
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.22
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.08
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.03
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.99
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.88
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.86
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.8
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.8
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.67
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.64
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.56
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.56
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.51
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.5
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.45
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.42
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.37
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.36
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.34
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.34
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.31
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.31
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.29
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.28
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.24
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.18
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.15
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.86
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.79
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.73
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.68
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.65
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.64
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.57
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.56
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.55
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.54
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.49
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.48
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.45
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.44
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.4
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.39
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.29
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.28
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.25
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.24
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.23
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.22
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.21
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.14
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.1
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.02
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.96
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.9
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.9
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.89
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.86
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.86
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.82
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.77
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.77
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.74
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.71
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.7
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.69
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.69
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.68
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.65
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.63
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.61
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.56
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.49
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.37
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.26
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.06
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.06
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.0
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.94
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.92
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.91
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.91
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.9
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.87
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.74
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.51
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.45
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.33
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.32
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.32
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.19
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.18
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.09
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.94
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.76
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.73
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.69
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.41
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.23
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.0
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.88
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.66
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.08
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.07
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.98
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	91.93
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.84
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.36
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.22
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	91.09
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	90.86
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.44
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	90.42
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	90.35
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	89.26
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.87
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.76
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	88.54
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.13
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	87.57
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	87.17
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	87.13
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.03
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.43
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	86.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.26
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	85.24
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	85.22
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.19
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	85.19
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.48
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.41
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.41
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	84.38
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	84.2
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	83.52
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	83.38
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	83.33
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	82.79
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.54
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.25
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	81.21

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=3.4e-17  Score=118.52  Aligned_cols=123  Identities=18%  Similarity=0.221  Sum_probs=91.8

Q ss_pred             CCCceEEEEEECCeEEEEEeeeccCCCcCCcCc-eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeE
Q 030274           21 NDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQ-LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREV   99 (180)
Q Consensus        21 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~-~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V   99 (180)
                      ..+-......+.|.++.+...      .+.|+. .+++++.+|.+.+.    ..++++|||+|||+|.+++.+++.+.+|
T Consensus         8 ~~~~~~~~~~~~g~~~~~~t~------~gvF~~~~~d~~t~lLi~~l~----~~~~~~VLDiGcG~G~~~~~la~~~~~v   77 (194)
T d1dusa_           8 KSDVKIVEDILRGKKLKFKTD------SGVFSYGKVDKGTKILVENVV----VDKDDDILDLGCGYGVIGIALADEVKST   77 (194)
T ss_dssp             CCCEEEEEEEETTEEEEEEEE------TTSTTTTSCCHHHHHHHHHCC----CCTTCEEEEETCTTSHHHHHHGGGSSEE
T ss_pred             ccceEEEEEEECCeeEEEEcC------CCccCCCCcCHHHHHHHHhCC----cCCCCeEEEEeecCChhHHHHHhhcccc
Confidence            344556677788998888732      334432 36777888777653    3367899999999999999999999999


Q ss_pred             EEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          100 LLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       100 ~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +++|+|+.+++.+++|++.|+..     ..++.+...++...        ....+||+|++++|+|.
T Consensus        78 ~~iD~s~~~i~~a~~n~~~~~l~-----~~~i~~~~~d~~~~--------~~~~~fD~Ii~~~p~~~  131 (194)
T d1dusa_          78 TMADINRRAIKLAKENIKLNNLD-----NYDIRVVHSDLYEN--------VKDRKYNKIITNPPIRA  131 (194)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCT-----TSCEEEEECSTTTT--------CTTSCEEEEEECCCSTT
T ss_pred             ceeeeccccchhHHHHHHHhCCc-----cceEEEEEcchhhh--------hccCCceEEEEcccEEe
Confidence            99999999999999999998743     22355554444332        13568999999999776

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=6.4e-16  Score=114.52  Aligned_cols=103  Identities=13%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .++|.+..+..++.+|||||||+|.++..+++.+.+|+++|+|+.+++.|++++..++.       .++.+...+..+. 
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-------~~~~~~~~d~~~~-   76 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-------ENVRFQQGTAESL-   76 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-------CSEEEEECBTTBC-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-------ccccccccccccc-
Confidence            34455555566889999999999999999999999999999999999999999998862       2455555554432 


Q ss_pred             hhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          143 QINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                            +...++||+|+++.++.+ .+....++.+.+.
T Consensus        77 ------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~  108 (234)
T d1xxla_          77 ------PFPDDSFDIITCRYAAHHFSDVRKAVREVARV  108 (234)
T ss_dssp             ------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             ------cccccccceeeeeceeecccCHHHHHHHHHHe
Confidence                  123578999999999877 5667777666554

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=8.2e-16  Score=116.45  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=87.1

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEE
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLL  101 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~  101 (180)
                      |......|.+.++.+.        .+.  ..--|.++.|+++..+... ..+.+|||+|||+|.+++.+++.  ..+|++
T Consensus        69 YI~G~~~F~~~~~~v~--------~~V--lIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~a  137 (274)
T d2b3ta1          69 HLTGVREFWSLPLFVS--------PAT--LIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIA  137 (274)
T ss_dssp             HHSCEEEETTEEEECC--------TTS--CCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEE
T ss_pred             hhcCcEEEeeeEEEEe--------ccc--cccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeee
Confidence            4455677888777765        211  1133566778877655433 25678999999999999999875  479999


Q ss_pred             ecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          102 TDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       102 ~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      +|+|+.+++.|++|++.++.       .++.+..-+|...        ....+||+|++|||++...
T Consensus       138 vDis~~Al~~A~~Na~~~~~-------~~v~~~~~d~~~~--------~~~~~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         138 VDRMPDAVSLAQRNAQHLAI-------KNIHILQSDWFSA--------LAGQQFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             ECSSHHHHHHHHHHHHHHTC-------CSEEEECCSTTGG--------GTTCCEEEEEECCCCBCTT
T ss_pred             ccchhHHHhHHHHHHHHhCc-------ccceeeecccccc--------cCCCceeEEEecchhhhhh
Confidence            99999999999999999973       2466666555432        1346899999999988743

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=2.1e-16  Score=118.75  Aligned_cols=95  Identities=20%  Similarity=0.196  Sum_probs=72.7

Q ss_pred             CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      .||.-..|.+..+.++|.+...  ++++|||+|||+|.+++.+++.|.+|+++|+|+.+++.|++|++.|+.+       
T Consensus        98 aFGTG~H~TT~l~l~~l~~~~~--~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~-------  168 (254)
T d2nxca1          98 AFGTGHHETTRLALKALARHLR--PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR-------  168 (254)
T ss_dssp             ----CCSHHHHHHHHHHHHHCC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC-------
T ss_pred             ccCccccchhhHHHHHHHhhcC--ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCc-------
Confidence            4676678889999999987653  7889999999999999999999999999999999999999999999732       


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcc
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGAD  162 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d  162 (180)
                       ..+...++.     . .  ...++||+|+++-
T Consensus       169 -~~~~~~d~~-----~-~--~~~~~fD~V~ani  192 (254)
T d2nxca1         169 -PRFLEGSLE-----A-A--LPFGPFDLLVANL  192 (254)
T ss_dssp             -CEEEESCHH-----H-H--GGGCCEEEEEEEC
T ss_pred             -eeEEecccc-----c-c--ccccccchhhhcc
Confidence             223322211     1 1  1346899999974

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.63  E-value=1.1e-15  Score=112.67  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++.+|||||||+|..+..+++.+.+|+++|+|+.+++.|++++..++       ..++.+...++.+.+       ..
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~-------~~~i~~~~~d~~~l~-------~~   78 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-------HQQVEYVQGDAEQMP-------FT   78 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEECCC-CCC-------SC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccc-------ccccccccccccccc-------cc
Confidence            4467899999999999999999999999999999999999999998876       235667766666532       23


Q ss_pred             CCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          152 PGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .++||+|++..++++ .+....++.+.+.
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~  107 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRV  107 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCHHHHHHHHHHh
Confidence            578999999999988 5666666665543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=4.7e-15  Score=105.09  Aligned_cols=94  Identities=18%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      +.|.++|....  .++.+|||+|||+|.+|+.+++.|++|+++|.++.+++.+++|++.++..           .+....
T Consensus        29 e~lf~~l~~~~--~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~-----------~~v~~~   95 (171)
T d1ws6a1          29 KALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLG-----------ARVVAL   95 (171)
T ss_dssp             HHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCC-----------CEEECS
T ss_pred             HHHHHHhhccc--cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccc-----------cceeee
Confidence            34555665432  36789999999999999999999999999999999999999999999732           123334


Q ss_pred             CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +.+...........+||+|+++||+-.
T Consensus        96 ~~d~~~~~~~~~~~~fD~If~DPPY~~  122 (171)
T d1ws6a1          96 PVEVFLPEAKAQGERFTVAFMAPPYAM  122 (171)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCTTS
T ss_pred             ehhcccccccccCCccceeEEcccccc
Confidence            443332333345678999999988543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.9e-15  Score=111.68  Aligned_cols=110  Identities=14%  Similarity=-0.056  Sum_probs=87.9

Q ss_pred             ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .+|.+......|.+.....++.+|||||||+|..+..+++. +.+|+++|.|+.+++.+++++..++.      ..++.+
T Consensus        14 ~~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl------~~~v~~   87 (245)
T d1nkva_          14 HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV------SERVHF   87 (245)
T ss_dssp             SSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEE
T ss_pred             cCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc------cccchh
Confidence            46777777777877777778999999999999999988875 78999999999999999999999873      235777


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~  178 (180)
                      ...++....        ..++||+|++..++++ .+....++.+.+
T Consensus        88 ~~~d~~~~~--------~~~~fD~v~~~~~~~~~~d~~~~l~~~~r  125 (245)
T d1nkva_          88 IHNDAAGYV--------ANEKCDVAACVGATWIAGGFAGAEELLAQ  125 (245)
T ss_dssp             EESCCTTCC--------CSSCEEEEEEESCGGGTSSSHHHHHHHTT
T ss_pred             hhhHHhhcc--------ccCceeEEEEEehhhccCCHHHHHHHHHH
Confidence            776665431        3578999999999888 566766666554

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.59  E-value=1.1e-14  Score=110.65  Aligned_cols=107  Identities=11%  Similarity=0.061  Sum_probs=83.7

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      ..+++.|.....+.++.+|||||||+|..+..+++. +.+|+++|+++.+++.++++....++      ..++.+...++
T Consensus        53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl------~~~v~~~~~d~  126 (282)
T d2o57a1          53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL------ADNITVKYGSF  126 (282)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC------TTTEEEEECCT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc------ccccccccccc
Confidence            345555666666668899999999999999998875 78999999999999999999988763      34677777777


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      .+..       ...++||+|++..++++ .+...+++.+.+.
T Consensus       127 ~~l~-------~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~  161 (282)
T d2o57a1         127 LEIP-------CEDNSYDFIWSQDAFLHSPDKLKVFQECARV  161 (282)
T ss_dssp             TSCS-------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             cccc-------ccccccchhhccchhhhccCHHHHHHHHHHh
Confidence            6542       24578999999999877 6666666665554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.4e-15  Score=110.35  Aligned_cols=87  Identities=14%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +..++||+|||+|.+++.+++.  +++|+++|+++++++.|++|++.|+.      ..++.+...+|...- ...+....
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l------~~~~~~~~~~~~~~~-~~~~~~~~  133 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL------SDLIKVVKVPQKTLL-MDALKEES  133 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC------TTTEEEEECCTTCSS-TTTSTTCC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC------CcceeeeeeccHHhh-hhhhhhcc
Confidence            4468999999999999998875  78999999999999999999999974      345666666655431 11111223


Q ss_pred             CCCCcEEEEccccccC
Q 030274          152 PGGFDLILGADIYILY  167 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~  167 (180)
                      .++||+|+||||+|..
T Consensus       134 ~~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         134 EIIYDFCMCNPPFFAN  149 (250)
T ss_dssp             SCCBSEEEECCCCC--
T ss_pred             cCceeEEEecCccccc
Confidence            5689999999999974

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=2.6e-14  Score=104.45  Aligned_cols=90  Identities=18%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      .+..++.+...  ++.+|||||||+|..+..+++.+.+|+++|+|+.+++.|++++...+.        ++.....+..+
T Consensus        26 ~~~~~~~~~l~--~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~--------~~~~~~~d~~~   95 (226)
T d1ve3a1          26 TLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES--------NVEFIVGDARK   95 (226)
T ss_dssp             HHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--------CCEEEECCTTS
T ss_pred             HHHHHHHHhcC--CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc--------ccccccccccc
Confidence            34445555432  567999999999999999999999999999999999999999877652        23333333333


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccC
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      .       +...++||+|++..++.+-
T Consensus        96 l-------~~~~~~fD~I~~~~~l~~~  115 (226)
T d1ve3a1          96 L-------SFEDKTFDYVIFIDSIVHF  115 (226)
T ss_dssp             C-------CSCTTCEEEEEEESCGGGC
T ss_pred             c-------cccCcCceEEEEecchhhC
Confidence            2       1235789999999998874

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.56  E-value=3.5e-15  Score=103.80  Aligned_cols=100  Identities=18%  Similarity=0.267  Sum_probs=71.8

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      +-++|...   .++++|||+|||||.+|+.++.+| .+|+++|.++.+++.+++|++.++.      ..++.+.+.++. 
T Consensus         5 ~fn~l~~~---~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~------~~~~~ii~~D~~-   74 (152)
T d2esra1           5 IFNMIGPY---FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA------ENRFTLLKMEAE-   74 (152)
T ss_dssp             HHHHHCSC---CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC------GGGEEEECSCHH-
T ss_pred             HHHHHHhh---CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc------ccchhhhccccc-
Confidence            34455432   478999999999999999888776 5999999999999999999999873      223444433322 


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                           .+++....+||+|++.||+........++.+
T Consensus        75 -----~~l~~~~~~fDiIf~DPPy~~~~~~~~l~~i  105 (152)
T d2esra1          75 -----RAIDCLTGRFDLVFLDPPYAKETIVATIEAL  105 (152)
T ss_dssp             -----HHHHHBCSCEEEEEECCSSHHHHHHHHHHHH
T ss_pred             -----ccccccccccceeEechhhccchHHHHHHHH
Confidence                 2233456799999999887654444444444

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=1.8e-14  Score=107.30  Aligned_cols=83  Identities=14%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .+.++|||+|||+|..++.+++.+.+|+++|.|+.|++.|++++..++.        ++.+...++.+.+        .+
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--------~i~~~~~d~~~l~--------~~  103 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--------KIEFLQGDVLEIA--------FK  103 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--------CCEEEESCGGGCC--------CC
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--------cchheehhhhhcc--------cc
Confidence            3667999999999999999999999999999999999999999988752        3445554443321        34


Q ss_pred             CCCcEEEEc-cccccCCchh
Q 030274          153 GGFDLILGA-DIYILYNRSL  171 (180)
Q Consensus       153 ~~fD~Ii~~-d~~y~~~~~~  171 (180)
                      ++||+|++. .++++.....
T Consensus       104 ~~fD~I~~~~~~~~~~~~~~  123 (251)
T d1wzna1         104 NEFDAVTMFFSTIMYFDEED  123 (251)
T ss_dssp             SCEEEEEECSSGGGGSCHHH
T ss_pred             cccchHhhhhhhhhcCChHH
Confidence            689999986 4555544343

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.1e-14  Score=105.71  Aligned_cols=79  Identities=15%  Similarity=0.260  Sum_probs=62.3

Q ss_pred             CCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           70 PDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ....+|++|||+|||+|.+++.++..| .+|+++|+++.+++.+++|++.++.        +..+...+..         
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--------~~~~~~~d~~---------  104 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--------KFKVFIGDVS---------  104 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--------SEEEEESCGG---------
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--------CceEEECchh---------
Confidence            344588999999999999999988887 4899999999999999999988762        2333332221         


Q ss_pred             hhCCCCCcEEEEcccccc
Q 030274          149 QKYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~  166 (180)
                       ....+||+|+++||+..
T Consensus       105 -~~~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1         105 -EFNSRVDIVIMNPPFGS  121 (201)
T ss_dssp             -GCCCCCSEEEECCCCSS
T ss_pred             -hhCCcCcEEEEcCcccc
Confidence             13578999999999755

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=9.8e-15  Score=104.66  Aligned_cols=95  Identities=14%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ....+...+.......++.+|||+|||+|.+++.+|+.+.+|+++|.++.+++.+++|++.++..      .++++...+
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~------~~v~~~~gd   90 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG------DNVTLMEGD   90 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC------TTEEEEESC
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCC------cceEEEECc
Confidence            33334333333344458899999999999999999998889999999999999999999999732      355555433


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      ..+     .  ......||+|++.....
T Consensus        91 a~~-----~--~~~~~~~D~v~~~~~~~  111 (186)
T d1l3ia_          91 APE-----A--LCKIPDIDIAVVGGSGG  111 (186)
T ss_dssp             HHH-----H--HTTSCCEEEEEESCCTT
T ss_pred             hhh-----c--ccccCCcCEEEEeCccc
Confidence            221     1  12346899999988653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.54  E-value=4.5e-14  Score=108.21  Aligned_cols=126  Identities=17%  Similarity=0.175  Sum_probs=85.8

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcCCeEEEe
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFCREVLLT  102 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~  102 (180)
                      ...+.+...+..+.+..     +....+|.  ++.......|+.+.. ...++++||||+||||.+++.+++.|++|+++
T Consensus        88 p~~~~v~e~gl~f~v~~-----~~~~~tG~--f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~V  160 (309)
T d2igta1          88 GETWPLSLLGVEFLGRF-----TAFRHVGV--FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHV  160 (309)
T ss_dssp             CSEEEEEETTEEEEEEC-----CSSSCCSC--CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEEeEEEEEEec-----cCCCcccc--ccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEE
Confidence            44567888888887763     33444553  333333333332211 11267899999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH--hhCCCCCcEEEEcccccc
Q 030274          103 DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII--QKYPGGFDLILGADIYIL  166 (180)
Q Consensus       103 D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~Ii~~d~~y~  166 (180)
                      |.|+.+++.|++|++.|+...          .++.|...|.+..+.  .....+||+||+.||.|-
T Consensus       161 D~s~~al~~a~~N~~ln~~~~----------~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~  216 (309)
T d2igta1         161 DASKKAIGWAKENQVLAGLEQ----------APIRWICEDAMKFIQREERRGSTYDIILTDPPKFG  216 (309)
T ss_dssp             CSCHHHHHHHHHHHHHHTCTT----------SCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEE
T ss_pred             eChHHHHHHHHHhhhhhcccC----------CcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCccc
Confidence            999999999999999997331          123333444333321  123568999999999774

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.53  E-value=4e-15  Score=107.42  Aligned_cols=72  Identities=14%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           71 DVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+.|++|||+|||+|.+++.+++.| .+|+++|+++.+++.+++|+...            .+..-++.+         
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~------------~~~~~D~~~---------  103 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGV------------NFMVADVSE---------  103 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTS------------EEEECCGGG---------
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccc------------cEEEEehhh---------
Confidence            44689999999999999999999887 57999999999999999986533            244443322         


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                       .+++||+|++|||+
T Consensus       104 -l~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         104 -ISGKYDTWIMNPPF  117 (197)
T ss_dssp             -CCCCEEEEEECCCC
T ss_pred             -cCCcceEEEeCccc
Confidence             35789999999996

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.53  E-value=6.2e-14  Score=101.18  Aligned_cols=90  Identities=17%  Similarity=0.271  Sum_probs=69.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||||||+|..++.+++.|.+|+++|+|+.+++.+++++...+.       .++.+...+.....        ...
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~~~~d~~~~~--------~~~   94 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-------DNLQTDLVDLNTLT--------FDG   94 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------TTEEEEECCTTTCC--------CCC
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-------cchhhhheeccccc--------ccc
Confidence            456999999999999999999999999999999999999999888762       23555555544432        356


Q ss_pred             CCcEEEEccccccCCch---hhHHHHHH
Q 030274          154 GFDLILGADIYILYNRS---LLMTSFFQ  178 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~~---~l~~~~~~  178 (180)
                      +||+|++..++++-...   .+++.+.+
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~  122 (198)
T d2i6ga1          95 EYDFILSTVVMMFLEAQTIPGLIANMQR  122 (198)
T ss_dssp             CEEEEEEESCGGGSCTTHHHHHHHHHHH
T ss_pred             cccEEEEeeeeecCCHHHHHHHHHHHHH
Confidence            89999999998874333   34444443

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=2.8e-14  Score=107.74  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=88.7

Q ss_pred             ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEe
Q 030274           24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLT  102 (180)
Q Consensus        24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~  102 (180)
                      |......|.+.+|.+.        .+  -..--|.++.|.+++.+........+++|+|||+|.+++.+++. .++|+++
T Consensus        70 YI~g~~~F~~~~f~v~--------~~--vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~  139 (271)
T d1nv8a_          70 YILGEKEFMGLSFLVE--------EG--VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFAT  139 (271)
T ss_dssp             HHHTEEEETTEEEECC--------TT--SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEE
T ss_pred             hhcCcEEEeeeEEEEe--------cC--ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeec
Confidence            4455667888777765        21  11244566788887765433234568999999999999988875 5799999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          103 DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       103 D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      |+|+.+++.|++|++.++.      ..++.+...+|....      ....++||+|++||||...
T Consensus       140 Dis~~Al~~A~~Na~~~~~------~~~~~i~~~~~~~~~------~~~~~~fDlIVsNPPYI~~  192 (271)
T d1nv8a_         140 DVSSKAVEIARKNAERHGV------SDRFFVRKGEFLEPF------KEKFASIEMILSNPPYVKS  192 (271)
T ss_dssp             ESCHHHHHHHHHHHHHTTC------TTSEEEEESSTTGGG------GGGTTTCCEEEECCCCBCG
T ss_pred             hhhhhHHHHHHHHHHHcCC------CceeEEeeccccccc------ccccCcccEEEEcccccCc
Confidence            9999999999999999873      234666666776542      1224689999999998763

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.49  E-value=1.3e-13  Score=102.57  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++++|||+|||+|..+..+++.|.+|+|+|.|+.|++.|++++..++.        ++.+...++.+.+        ..+
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--------~v~~~~~d~~~~~--------~~~  100 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--------KPRLACQDISNLN--------INR  100 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--------CCEEECCCGGGCC--------CSC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc--------cceeeccchhhhc--------ccc
Confidence            567999999999999999999999999999999999999999887752        3445444443221        256


Q ss_pred             CCcEEEEc-ccccc-CCchhh
Q 030274          154 GFDLILGA-DIYIL-YNRSLL  172 (180)
Q Consensus       154 ~fD~Ii~~-d~~y~-~~~~~l  172 (180)
                      +||+|++. .++++ .....+
T Consensus       101 ~fD~i~~~~~~~~~~~~~~~~  121 (246)
T d1y8ca_         101 KFDLITCCLDSTNYIIDSDDL  121 (246)
T ss_dssp             CEEEEEECTTGGGGCCSHHHH
T ss_pred             cccccceeeeeeeccCCHHHH
Confidence            89999985 44544 444443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.1e-14  Score=110.36  Aligned_cols=107  Identities=14%  Similarity=0.012  Sum_probs=84.1

Q ss_pred             cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274           48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS  127 (180)
Q Consensus        48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~  127 (180)
                      ++.|.+..-..+..|.+++.+.....++.+||||+||+|.+|+.+|+.+++|+++|.++.+++.|++|++.|+.      
T Consensus       186 p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i------  259 (358)
T d1uwva2         186 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL------  259 (358)
T ss_dssp             SSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC------
T ss_pred             CchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhccc------
Confidence            67788989999999999888766555778999999999999999999999999999999999999999999983      


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                       .++.+...+-...  +.. ......++|+||..||=
T Consensus       260 -~n~~~~~~~~~~~--~~~-~~~~~~~~d~vilDPPR  292 (358)
T d1uwva2         260 -QNVTFYHENLEED--VTK-QPWAKNGFDKVLLDPAR  292 (358)
T ss_dssp             -CSEEEEECCTTSC--CSS-SGGGTTCCSEEEECCCT
T ss_pred             -ccceeeecchhhh--hhh-hhhhhccCceEEeCCCC
Confidence             3444444333222  111 11234679999999973

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=5.3e-14  Score=104.03  Aligned_cols=95  Identities=19%  Similarity=0.345  Sum_probs=66.7

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +..++.+...  ++.+|||+|||+|..+..+++.|++|+++|+|+.+++.|++|...+             ....+..+ 
T Consensus        32 ~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-------------~~~~~~~~-   95 (246)
T d2avna1          32 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKN-------------VVEAKAED-   95 (246)
T ss_dssp             HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSC-------------EEECCTTS-
T ss_pred             HHHHHHHhcC--CCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccc-------------cccccccc-
Confidence            3344444332  5679999999999999999999999999999999999999863222             23332222 


Q ss_pred             chhhHHHhhCCCCCcEEEEc-ccccc-CCchhhHHHHHH
Q 030274          142 DQINKIIQKYPGGFDLILGA-DIYIL-YNRSLLMTSFFQ  178 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~-d~~y~-~~~~~l~~~~~~  178 (180)
                        +    +...++||+|++. +++++ .+....++.+.+
T Consensus        96 --l----~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r  128 (246)
T d2avna1          96 --L----PFPSGAFEAVLALGDVLSYVENKDKAFSEIRR  128 (246)
T ss_dssp             --C----CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHH
T ss_pred             --c----ccccccccceeeecchhhhhhhHHHHHHHHHh
Confidence              1    2235789999985 66666 566665655544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.46  E-value=7.5e-14  Score=102.70  Aligned_cols=86  Identities=15%  Similarity=0.245  Sum_probs=66.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .++++|||||||+|..+..+++.|.+|+++|+|+.+++.++++...           ++.+...++.+.        ..+
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~-----------~~~~~~~~~~~~--------~~~   79 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----------GITYIHSRFEDA--------QLP   79 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----------CEEEEESCGGGC--------CCS
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccc-----------cccccccccccc--------ccc
Confidence            3677999999999999999999999999999999999999877432           244544433322        135


Q ss_pred             CCCcEEEEcccccc-CCchhhHHHHH
Q 030274          153 GGFDLILGADIYIL-YNRSLLMTSFF  177 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~  177 (180)
                      ++||+|++.+++.| ++....+..+.
T Consensus        80 ~~fD~I~~~~vleh~~d~~~~l~~i~  105 (225)
T d2p7ia1          80 RRYDNIVLTHVLEHIDDPVALLKRIN  105 (225)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHH
T ss_pred             cccccccccceeEecCCHHHHHHHHH
Confidence            78999999999977 66666555543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.5e-13  Score=100.86  Aligned_cols=88  Identities=18%  Similarity=0.141  Sum_probs=63.1

Q ss_pred             CCCCCCCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           69 NPDVLQASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      .+...++.+|||||||+|..+..+++ .+.+|+++|+|+.+++.|++++..++.       .++.+.+.+..+.      
T Consensus        55 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-------~~~~f~~~d~~~~------  121 (222)
T d2ex4a1          55 GPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-------RVRNYFCCGLQDF------  121 (222)
T ss_dssp             ---CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-------GEEEEEECCGGGC------
T ss_pred             ccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-------ccccccccccccc------
Confidence            33444667999999999999987654 467999999999999999999887651       2334444433322      


Q ss_pred             HhhCCCCCcEEEEccccccCCch
Q 030274          148 IQKYPGGFDLILGADIYILYNRS  170 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~~~~~  170 (180)
                       +...++||+|++..++++-..+
T Consensus       122 -~~~~~~fD~I~~~~~l~h~~~~  143 (222)
T d2ex4a1         122 -TPEPDSYDVIWIQWVIGHLTDQ  143 (222)
T ss_dssp             -CCCSSCEEEEEEESCGGGSCHH
T ss_pred             -ccccccccccccccccccchhh
Confidence             1235799999999999884433

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.45  E-value=4.6e-13  Score=101.65  Aligned_cols=101  Identities=10%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             HHHHhhC-CCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274           63 NDYLSKN-PDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW  138 (180)
Q Consensus        63 ~~~l~~~-~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~  138 (180)
                      .+++.+. ....++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++++...+        .++.+...+.
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--------~~~~f~~~d~   86 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--------YDSEFLEGDA   86 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--------SEEEEEESCT
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--------cccccccccc
Confidence            4555443 23446789999999999999999874   5799999999999999999988764        2344444444


Q ss_pred             CCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          139 GNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      ....        ..++||+|+++.++++ .+....++.+.+.
T Consensus        87 ~~~~--------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~  120 (281)
T d2gh1a1          87 TEIE--------LNDKYDIAICHAFLLHMTTPETMLQKMIHS  120 (281)
T ss_dssp             TTCC--------CSSCEEEEEEESCGGGCSSHHHHHHHHHHT
T ss_pred             cccc--------ccCCceEEEEehhhhcCCCHHHHHHHHHHH
Confidence            3321        2468999999999987 5666666666554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.42  E-value=4.6e-13  Score=95.50  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=79.4

Q ss_pred             ceecchHHHHHHHHhhC-CCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274           53 QLVWPGAMLMNDYLSKN-PDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG  130 (180)
Q Consensus        53 ~~~w~~~~~l~~~l~~~-~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~  130 (180)
                      ..+-|.+..+-+.+... .....+.+||||+||+|.+|+.++..|+ +|+++|.++.+++.+++|++.++.      ..+
T Consensus        19 ~~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~------~~~   92 (182)
T d2fhpa1          19 DNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE------PEK   92 (182)
T ss_dssp             CSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC------GGG
T ss_pred             CCcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc------ccc
Confidence            34566665555444332 1234788999999999999998888875 799999999999999999998862      223


Q ss_pred             EEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274          131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      +.+.+.+...   ..........+||+|++.||+.......++..+.
T Consensus        93 ~~i~~~D~~~---~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~  136 (182)
T d2fhpa1          93 FEVRKMDANR---ALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKML  136 (182)
T ss_dssp             EEEEESCHHH---HHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHH
T ss_pred             cccccccchh---hhhhhcccCCCcceEEechhhhhhHHHHHHHHHH
Confidence            4444433221   1111223456899999999976665566665554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=1.1e-12  Score=96.20  Aligned_cols=90  Identities=11%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++.+|||||||+|..+..+++    .+.+|+++|.|+.|++.|+++++..+.      ..++.....+...         
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~------~~~~~~~~~d~~~---------  103 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS------EIPVEILCNDIRH---------  103 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC------SSCEEEECSCTTT---------
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc------cchhhhccchhhc---------
Confidence            677999999999999998886    367999999999999999999887642      1223333222211         


Q ss_pred             hCCCCCcEEEEccccccCCc---hhhHHHHHH
Q 030274          150 KYPGGFDLILGADIYILYNR---SLLMTSFFQ  178 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~  178 (180)
                      ....++|+|+++.++++...   ..+++.+.+
T Consensus       104 ~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~  135 (225)
T d1im8a_         104 VEIKNASMVILNFTLQFLPPEDRIALLTKIYE  135 (225)
T ss_dssp             CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHH
T ss_pred             cccccceeeEEeeeccccChhhHHHHHHHHHH
Confidence            13468899999999877433   344444443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1e-12  Score=101.11  Aligned_cols=103  Identities=16%  Similarity=0.267  Sum_probs=73.4

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      ..+.+.++....++++|||||||+|.+++.+|+.|+ +|+++|.++.+.. +++++..++.      ..++.+...+..+
T Consensus        23 y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~------~~~i~~~~~~~~~   95 (311)
T d2fyta1          23 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKL------EDTITLIKGKIEE   95 (311)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTC------TTTEEEEESCTTT
T ss_pred             HHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCC------CccceEEEeeHHH
Confidence            345566666667899999999999999999999984 8999999987654 5666666652      3456666555444


Q ss_pred             CchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274          141 SDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ  178 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~  178 (180)
                      ..       ....+||+|++..+.+.......++.+..
T Consensus        96 l~-------~~~~~~D~Ivse~~~~~~~~e~~~~~~~~  126 (311)
T d2fyta1          96 VH-------LPVEKVDVIISEWMGYFLLFESMLDSVLY  126 (311)
T ss_dssp             SC-------CSCSCEEEEEECCCBTTBTTTCHHHHHHH
T ss_pred             hc-------CccccceEEEEeeeeeecccccccHHHHH
Confidence            32       13568999999877666444455555544

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.6e-13  Score=96.20  Aligned_cols=110  Identities=12%  Similarity=0.085  Sum_probs=71.8

Q ss_pred             ecchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274           55 VWPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA  132 (180)
Q Consensus        55 ~w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~  132 (180)
                      +-|.+..+.+.+.... ....+.+||||+||+|.+|+.++..| .+|+++|.++.+++.+++|++.++.       .+..
T Consensus        23 ~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-------~~~~   95 (183)
T d2fpoa1          23 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-------GNAR   95 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-------CSEE
T ss_pred             cCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-------ccee
Confidence            4555543333332211 12477899999999999999877776 4899999999999999999998752       1233


Q ss_pred             EEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274          133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      +.   ..  +.+. ++.....+||+|++.||+-......++..+.
T Consensus        96 ii---~~--d~~~-~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~  134 (183)
T d2fpoa1          96 VV---NS--NAMS-FLAQKGTPHNIVFVDPPFRRGLLEETINLLE  134 (183)
T ss_dssp             EE---CS--CHHH-HHSSCCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred             ee---ee--cccc-cccccccccCEEEEcCccccchHHHHHHHHH
Confidence            32   22  2222 2334567899999999965555555555544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=1.3e-12  Score=100.86  Aligned_cols=124  Identities=15%  Similarity=0.090  Sum_probs=83.0

Q ss_pred             eEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecC
Q 030274           25 QLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDH  104 (180)
Q Consensus        25 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~  104 (180)
                      ....+.-.|..+.+..     .....+|..+-....  ..++ +.   .++++|||+|||+|..++.+|+.+++|+++|.
T Consensus       107 ~~~~v~E~G~~f~v~l-----~~~~~tG~flDqr~~--r~~~-~~---~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~  175 (318)
T d1wxxa2         107 ERVQVQEGRVRYLVDL-----RAGQKTGAYLDQREN--RLYM-ER---FRGERALDVFSYAGGFALHLALGFREVVAVDS  175 (318)
T ss_dssp             SEEEEEETTEEEEEEC-----STTSCCCCCGGGHHH--HHHG-GG---CCEEEEEEETCTTTHHHHHHHHHEEEEEEEES
T ss_pred             ceEEEEECCEEEEEec-----hhccccccchhhhhh--HHHH-HH---hCCCeeeccCCCCcHHHHHHHhcCCcEEeecc
Confidence            3445666676666652     223335554333322  2233 22   26889999999999999999987889999999


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCc
Q 030274          105 NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNR  169 (180)
Q Consensus       105 ~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~  169 (180)
                      |+.+++.+++|++.|+..       ++.+...+..+   ..........+||+|++.+|.+....
T Consensus       176 s~~al~~a~~n~~~ngl~-------~~~~i~~d~~~---~~~~~~~~~~~fD~Vi~DpP~~~~~~  230 (318)
T d1wxxa2         176 SAEALRRAEENARLNGLG-------NVRVLEANAFD---LLRRLEKEGERFDLVVLDPPAFAKGK  230 (318)
T ss_dssp             CHHHHHHHHHHHHHTTCT-------TEEEEESCHHH---HHHHHHHTTCCEEEEEECCCCSCCST
T ss_pred             hHHHHHHHHHHHHHcCCC-------CcceeeccHHH---HhhhhHhhhcCCCEEEEcCCccccch
Confidence            999999999999999832       34444333222   22223345679999999999776443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=2.7e-12  Score=97.35  Aligned_cols=105  Identities=12%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL  136 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~  136 (180)
                      +.....+.+.+...+.++.+|||||||+|.+++.+++. |.+|+++|+|++.++.++++++..+..      .++.+...
T Consensus        36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~------~~~~~~~~  109 (280)
T d2fk8a1          36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN------RSRQVLLQ  109 (280)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS------SCEEEEES
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccc------cchhhhhh
Confidence            33555666777777778999999999999999988865 899999999999999999999887632      23333333


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEccccccCCc---hhhHHHHHH
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYILYNR---SLLMTSFFQ  178 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~  178 (180)
                      ++.          ..+++||.|++..++.+-..   ...++.+.+
T Consensus       110 d~~----------~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~  144 (280)
T d2fk8a1         110 GWE----------DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFN  144 (280)
T ss_dssp             CGG----------GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHH
T ss_pred             hhh----------hhccchhhhhHhhHHHHhhhhhHHHHHHHHHh
Confidence            222          23679999999999887432   344444443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.3e-13  Score=102.54  Aligned_cols=100  Identities=13%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +++.++...+++++|||||||+|.+++.+|+.| .+|+++|.++. ...++++++.|+.      ..++.+...+..+.+
T Consensus        23 ~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~------~~~v~~~~~~~~~~~   95 (316)
T d1oria_          23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKL------DHVVTIIKGKVEEVE   95 (316)
T ss_dssp             HHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTC------TTTEEEEESCTTTCC
T ss_pred             HHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCC------ccccceEeccHHHcc
Confidence            445555555688999999999999999999997 58999999874 5778888888873      345666665555432


Q ss_pred             hhhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274          143 QINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                             ....+||+|++..+.+....+..++.+.
T Consensus        96 -------~~~~~~D~ivs~~~~~~l~~e~~~~~~l  123 (316)
T d1oria_          96 -------LPVEKVDIIISEWMGYCLFYESMLNTVL  123 (316)
T ss_dssp             -------CSSSCEEEEEECCCBBTBTBTCCHHHHH
T ss_pred             -------cccceeEEEeeeeeeeeeccHHHHHHHH
Confidence                   1346899999987766544343344433

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=7.2e-13  Score=102.68  Aligned_cols=99  Identities=13%  Similarity=0.252  Sum_probs=71.9

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .+.++....++++|||||||+|.+++.+|+.|+ +|+++|.++ +++.++++++.++.      ..++.+...+..+.. 
T Consensus        29 aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~------~~~i~~i~~~~~~l~-  100 (328)
T d1g6q1_          29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGF------SDKITLLRGKLEDVH-  100 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTC------TTTEEEEESCTTTSC-
T ss_pred             HHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc------cccceEEEeehhhcc-
Confidence            344444445789999999999999999999974 899999986 77899999998873      345666666555432 


Q ss_pred             hhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274          144 INKIIQKYPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                            ....+||+|++..+.+.......+..+.
T Consensus       101 ------~~~~~~D~i~se~~~~~~~~e~~~~~~~  128 (328)
T d1g6q1_         101 ------LPFPKVDIIISEWMGYFLLYESMMDTVL  128 (328)
T ss_dssp             ------CSSSCEEEEEECCCBTTBSTTCCHHHHH
T ss_pred             ------CcccceeEEEEEecceeeccchhHHHHH
Confidence                  2356899999988876644443344433

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.4e-13  Score=98.78  Aligned_cols=104  Identities=13%  Similarity=0.040  Sum_probs=70.8

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCC----------CCC
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSEN----------PNS  127 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~----------~~~  127 (180)
                      ....|.+++.+.....++.+|||+|||+|..++.+|+.|.+|+++|+|+.+++.++++.........          ...
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            3466777776654445788999999999999999999999999999999999999887654321000          000


Q ss_pred             CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274          128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY  167 (180)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~  167 (180)
                      ..++.+...++...      .....+.||+|+..-++++-
T Consensus       109 ~~~v~~~~~d~~~l------~~~~~~~fd~i~~~~~l~~~  142 (229)
T d2bzga1         109 SGNISLYCCSIFDL------PRTNIGKFDMIWDRGALVAI  142 (229)
T ss_dssp             TSSEEEEESCGGGG------GGSCCCCEEEEEESSSTTTS
T ss_pred             CCcEEEEEcchhhc------cccccCceeEEEEEEEEEec
Confidence            11233333322211      12245789999999987764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=1.6e-11  Score=94.83  Aligned_cols=101  Identities=14%  Similarity=0.051  Sum_probs=71.2

Q ss_pred             HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      ......++.+...  ++++|||+|||+|.+++.+++.|+ +|+++|.++.+++.+++|++.|+..      .++.+... 
T Consensus       132 qr~~r~~~~~~~~--~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~------~~~~~~~~-  202 (324)
T d2as0a2         132 QRENRLALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE------DRMKFIVG-  202 (324)
T ss_dssp             THHHHHHHGGGCC--TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG------GGEEEEES-
T ss_pred             hhhHHHHHHhhcC--CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC------ccceeeec-
Confidence            3444445554432  688999999999999999998874 8999999999999999999999832      23333332 


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEccccccCCch
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADIYILYNRS  170 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~  170 (180)
                        +.............+||+|++.+|.+.....
T Consensus       203 --d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~  233 (324)
T d2as0a2         203 --SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEK  233 (324)
T ss_dssp             --CHHHHHHHHHHTTCCEEEEEECCCCSCSSGG
T ss_pred             --hhhhhhHHHHhccCCCCchhcCCccccCCHH
Confidence              2211111123356799999999997664433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.34  E-value=3.4e-12  Score=90.96  Aligned_cols=100  Identities=11%  Similarity=0.040  Sum_probs=66.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCC-----CCCCCcEEEEEe
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSEN-----PNSDAGLAVAKL  136 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~-----~~~~~~~~~~~~  136 (180)
                      |.+|+... ...++.+|||+|||+|..++.+|+.|.+|+++|+|+.+++.+++++...+....     ........+...
T Consensus         9 ~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
T d1pjza_           9 LQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   87 (201)
T ss_dssp             HHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence            44444443 234788999999999999999999999999999999999999998755321000     000011223333


Q ss_pred             ecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274          137 EWGNSDQINKIIQKYPGGFDLILGADIYILYN  168 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~  168 (180)
                      ++.....      .....||+|+++.++.+..
T Consensus        88 d~~~l~~------~~~~~~D~i~~~~~l~~l~  113 (201)
T d1pjza_          88 DFFALTA------RDIGHCAAFYDRAAMIALP  113 (201)
T ss_dssp             CCSSSTH------HHHHSEEEEEEESCGGGSC
T ss_pred             ccccccc------ccccceeEEEEEeeeEecc
Confidence            3333211      1234799999999877643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.33  E-value=4.3e-12  Score=94.92  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=63.1

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      .+|...+ ..+..+|||+|||+|.++..++. .+.+|+++|.++.+++.|++++....         ++.+...+..   
T Consensus        84 ~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~---------~~~~~~~d~~---  150 (254)
T d1xtpa_          84 NFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP---------VGKFILASME---  150 (254)
T ss_dssp             HHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS---------EEEEEESCGG---
T ss_pred             HHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc---------cceeEEcccc---
Confidence            3444333 34667999999999999987664 46789999999999999998765432         2333333222   


Q ss_pred             hhhHHHhhCCCCCcEEEEccccccCCchh
Q 030274          143 QINKIIQKYPGGFDLILGADIYILYNRSL  171 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~  171 (180)
                      .+    +...++||+|++..++++-...+
T Consensus       151 ~~----~~~~~~fD~I~~~~vl~hl~d~d  175 (254)
T d1xtpa_         151 TA----TLPPNTYDLIVIQWTAIYLTDAD  175 (254)
T ss_dssp             GC----CCCSSCEEEEEEESCGGGSCHHH
T ss_pred             cc----ccCCCccceEEeeccccccchhh
Confidence            21    12356899999999998854443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=1.2e-11  Score=93.97  Aligned_cols=106  Identities=10%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK  135 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  135 (180)
                      .+...+.+++.+...+.++.+|||||||.|.+++.+|+ .|.+|+++++|++.++.++++++..+.      ..++.+..
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~------~~~v~~~~  118 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN------LRSKRVLL  118 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC------CSCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh------hhhhHHHH
Confidence            44567778888888888999999999999999998776 589999999999999999999888763      34566665


Q ss_pred             eecCCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHH
Q 030274          136 LEWGNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQ  178 (180)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~  178 (180)
                      .++..          .+++||.|++-.++-+-   +...+++.+.+
T Consensus       119 ~d~~~----------~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r  154 (285)
T d1kpga_         119 AGWEQ----------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHR  154 (285)
T ss_dssp             SCGGG----------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHH
T ss_pred             hhhhc----------ccccccceeeehhhhhcCchhHHHHHHHHHh
Confidence            55532          35689999999998773   22444544443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.32  E-value=4.8e-12  Score=94.32  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=61.5

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++++|||||||+|.....+++.+ .+|+|+|+|+.+++.|+++....+.      ..++.+...+......      ...
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~------~~~v~f~~~D~~~~~~------~~~   91 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR------RFKVFFRAQDSYGRHM------DLG   91 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC------SSEEEEEESCTTTSCC------CCS
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC------CcceEEEEcchhhhcc------ccc
Confidence            67899999999998888888876 5899999999999999998877641      2345555555432210      124


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      ++||+|++..++++
T Consensus        92 ~~fD~V~~~~~l~~  105 (252)
T d1ri5a_          92 KEFDVISSQFSFHY  105 (252)
T ss_dssp             SCEEEEEEESCGGG
T ss_pred             ccceEEEEcceeee
Confidence            68999999998766

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=1.8e-11  Score=93.18  Aligned_cols=95  Identities=14%  Similarity=0.120  Sum_probs=74.4

Q ss_pred             cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      -.+.....+.+.+...+.++.+|||||||.|.+++.+|+ .|.+|+++++|++.++.+++.+...+..      .++.+.
T Consensus        43 ~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~------~~v~~~  116 (291)
T d1kpia_          43 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP------RRKEVR  116 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCS------SCEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccc------hhhhhh
Confidence            334466777788888888999999999999999997775 5899999999999999999999887632      234444


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..++.          ...++||.|++-.++-+
T Consensus       117 ~~d~~----------~~~~~fD~i~sie~~eH  138 (291)
T d1kpia_         117 IQGWE----------EFDEPVDRIVSLGAFEH  138 (291)
T ss_dssp             ECCGG----------GCCCCCSEEEEESCGGG
T ss_pred             hhccc----------ccccccceEeechhHHh
Confidence            33322          23578999999999866

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=3.7e-12  Score=95.54  Aligned_cols=79  Identities=13%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||+|||+|.+++.+|+.+ ++|+++|.++.+++.+++|++.|+..      .++.+.+.|.....        ..
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~------~~v~~~~~D~~~~~--------~~  172 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------DRMSAYNMDNRDFP--------GE  172 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------TTEEEECSCTTTCC--------CC
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC------ceEEEEEcchHHhc--------cC
Confidence            68899999999999999999887 59999999999999999999999843      34666555543321        24


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      ..||.|++++|.+.
T Consensus       173 ~~~D~Ii~~~p~~~  186 (260)
T d2frna1         173 NIADRILMGYVVRT  186 (260)
T ss_dssp             SCEEEEEECCCSSG
T ss_pred             CCCCEEEECCCCch
Confidence            57999999987644

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=6.4e-12  Score=91.60  Aligned_cols=87  Identities=17%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +.+.....++.+|||+|||+|..+..+|+. +  .+|+++|.++++++.+++|++..+.       .++...   .++..
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-------~n~~~~---~~d~~  136 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-------ENVIFV---CGDGY  136 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-------CSEEEE---ESCGG
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-------cccccc---cCchH
Confidence            444445668899999999999999999875 3  5899999999999999999998762       233332   33322


Q ss_pred             hhhHHHhhCCCCCcEEEEcccccc
Q 030274          143 QINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ..  .  ...++||+|+++..+.+
T Consensus       137 ~~--~--~~~~~fD~I~~~~~~~~  156 (213)
T d1dl5a1         137 YG--V--PEFSPYDVIFVTVGVDE  156 (213)
T ss_dssp             GC--C--GGGCCEEEEEECSBBSC
T ss_pred             Hc--c--ccccchhhhhhhccHHH
Confidence            11  0  12457999999887654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.27  E-value=1.4e-12  Score=95.21  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             CcccCCCceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-
Q 030274           17 SFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-   95 (180)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-   95 (180)
                      ..|++..+.  .+.+.+.++.+...+.++            +...++. +.+..+..++.+|||+|||+|+.+..+|+. 
T Consensus        36 e~Fvp~~~~--~~AY~D~~l~i~~g~~is------------~P~~~a~-ml~~L~l~~g~~VLeIGsGsGY~taila~l~  100 (215)
T d1jg1a_          36 YLSVEDKYK--KYAHIDEPLPIPAGQTVS------------APHMVAI-MLEIANLKPGMNILEVGTGSGWNAALISEIV  100 (215)
T ss_dssp             GGGSCGGGG--GGTTSSSCEECSTTCEEC------------CHHHHHH-HHHHHTCCTTCCEEEECCTTSHHHHHHHHHH
T ss_pred             hhcCCHHHh--hcccccCCcccchhhhhh------------hhhhHHH-HHHhhccCccceEEEecCCCChhHHHHHHhh
Confidence            356666554  444556666664222221            2222232 333344557889999999999999999986 


Q ss_pred             CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274           96 CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus        96 ~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      +.+|+++|.++.+++.+++|++..+       ..++.+...+.....       ....+||.|+....+.
T Consensus       101 g~~V~~ie~~~~l~~~a~~~l~~~g-------~~nv~~~~gd~~~g~-------~~~~pfD~Iiv~~a~~  156 (215)
T d1jg1a_         101 KTDVYTIERIPELVEFAKRNLERAG-------VKNVHVILGDGSKGF-------PPKAPYDVIIVTAGAP  156 (215)
T ss_dssp             CSCEEEEESCHHHHHHHHHHHHHTT-------CCSEEEEESCGGGCC-------GGGCCEEEEEECSBBS
T ss_pred             CceeEEEeccHHHHHHHHHHHHHcC-------CceeEEEECccccCC-------cccCcceeEEeecccc
Confidence            6789999999999999999999986       234555554433221       1246899999887664

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.27  E-value=4.6e-11  Score=91.91  Aligned_cols=83  Identities=11%  Similarity=0.039  Sum_probs=63.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH--Hhh
Q 030274           74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI--IQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  150 (180)
                      ++++|||++||+|.+|+.+++.|+ +|+++|.++.+++.+++|++.|+..     ..++.+...     +.+..+  ...
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~-----~~~~~~i~~-----d~~~~l~~~~~  213 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD-----MANHQLVVM-----DVFDYFKYARR  213 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC-----CTTEEEEES-----CHHHHHHHHHH
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc-----CcceEEEEc-----cHHHHHHHHHh
Confidence            688999999999999999888775 8999999999999999999999842     123444332     222221  223


Q ss_pred             CCCCCcEEEEcccccc
Q 030274          151 YPGGFDLILGADIYIL  166 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~  166 (180)
                      ...+||+||+.||.+-
T Consensus       214 ~~~~fD~Ii~DPP~f~  229 (317)
T d2b78a2         214 HHLTYDIIIIDPPSFA  229 (317)
T ss_dssp             TTCCEEEEEECCCCC-
T ss_pred             hcCCCCEEEEcChhhc
Confidence            4568999999999764

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=2.3e-12  Score=98.09  Aligned_cols=86  Identities=17%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+++|||+|||+|..++.+++.|.+|+++|+|+.|++.|+++...++....   .....+...+|...+.    ......
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~  128 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA---FDKWVIEEANWLTLDK----DVPAGD  128 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH---HHTCEEEECCGGGHHH----HSCCTT
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc---cceeeeeecccccccc----ccCCCC
Confidence            467999999999999999999999999999999999999999877642100   0122344555543221    011346


Q ss_pred             CCcEEEEcc-cccc
Q 030274          154 GFDLILGAD-IYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d-~~y~  166 (180)
                      +||+|++.. ++.+
T Consensus       129 ~fd~v~~~~~~~~~  142 (292)
T d1xvaa_         129 GFDAVICLGNSFAH  142 (292)
T ss_dssp             CEEEEEECSSCGGG
T ss_pred             CceEEEEecCchhh
Confidence            899998754 4443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.8e-12  Score=96.20  Aligned_cols=96  Identities=16%  Similarity=0.232  Sum_probs=66.1

Q ss_pred             CCeEEEeCCcCChHHHHHhhc--------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           75 ASSILELGSGVGVTGILCSRF--------CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~--------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ..+|||+|||+|..+..+++.        +.+++++|.|+.+++.++++++...         ++....++|........
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~  111 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS---------NLENVKFAWHKETSSEY  111 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC---------SCTTEEEEEECSCHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc---------ccccccccchhhhhhhh
Confidence            348999999999988766542        2478999999999999999876542         11134455554431110


Q ss_pred             ----HHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          147 ----IIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       147 ----~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                          .......+||+|++..++|+ .+....++.+.+.
T Consensus       112 ~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~  149 (280)
T d1jqea_         112 QSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSL  149 (280)
T ss_dssp             HHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHT
T ss_pred             cchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhh
Confidence                01124678999999999988 5667777776654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.25  E-value=9.3e-12  Score=91.30  Aligned_cols=83  Identities=14%  Similarity=0.184  Sum_probs=61.9

Q ss_pred             HhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274           66 LSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      +.+.....++.+|||+|||+|+.+..+|+.+.+|+++|.++.+++.+++|+....         ++.+...+-....   
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~---------nv~~~~~d~~~g~---  129 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---------NIKLILGDGTLGY---  129 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---------SEEEEESCGGGCC---
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhccc---------ccccccCchhhcc---
Confidence            4444455688899999999999999999999999999999999999999876542         4555443322110   


Q ss_pred             HHHhhCCCCCcEEEEcccc
Q 030274          146 KIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       146 ~~~~~~~~~fD~Ii~~d~~  164 (180)
                          ...++||.|+++-.+
T Consensus       130 ----~~~~pfD~Iiv~~a~  144 (224)
T d1vbfa_         130 ----EEEKPYDRVVVWATA  144 (224)
T ss_dssp             ----GGGCCEEEEEESSBB
T ss_pred             ----hhhhhHHHHHhhcch
Confidence                123579999987654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.25  E-value=3.6e-11  Score=87.30  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             CceecchHH-HHHHHHhh--CCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           52 GQLVWPGAM-LMNDYLSK--NPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        52 g~~~w~~~~-~l~~~l~~--~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      +.+.|..-. .|+..+..  .....++.+|||||||+|..+..+|+..  .+|+++|+++.+++.++++++..+
T Consensus        31 ~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~  104 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN  104 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS
T ss_pred             ceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC
Confidence            557887543 55655543  3445688999999999999999988752  589999999999999999987753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.24  E-value=3e-11  Score=89.94  Aligned_cols=84  Identities=14%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             HHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           65 YLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      ++.......++.+|||+|||+|.+++.+|+.   ..+|+++|.++++++.|++|++.++      ...++.+...++.+.
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~------~~~nv~~~~~Di~~~  149 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY------DIGNVRTSRSDIADF  149 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS------CCTTEEEECSCTTTC
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc------CCCceEEEEeeeecc
Confidence            3455556678999999999999999999975   3699999999999999999998864      123555555554432


Q ss_pred             chhhHHHhhCCCCCcEEEEcc
Q 030274          142 DQINKIIQKYPGGFDLILGAD  162 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d  162 (180)
                              .....||.|+..-
T Consensus       150 --------~~~~~fD~V~ld~  162 (250)
T d1yb2a1         150 --------ISDQMYDAVIADI  162 (250)
T ss_dssp             --------CCSCCEEEEEECC
T ss_pred             --------cccceeeeeeecC
Confidence                    1346899998753

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.20  E-value=6.7e-11  Score=87.05  Aligned_cols=110  Identities=11%  Similarity=0.055  Sum_probs=71.9

Q ss_pred             CceecchHH-HHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCC
Q 030274           52 GQLVWPGAM-LMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENP  125 (180)
Q Consensus        52 g~~~w~~~~-~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~  125 (180)
                      .++.|+.-. .|+..+...   ....++.+|||||||+|..+..+|+.+  .+|+++|+|+.+++.++.++..+.     
T Consensus        48 e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-----  122 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-----  122 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-----
T ss_pred             eeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc-----
Confidence            456777664 666666543   335578999999999999999999864  699999999999999998866543     


Q ss_pred             CCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHH
Q 030274          126 NSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSF  176 (180)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~  176 (180)
                          ++.....+......      .....+|++++...+++ .....++..+
T Consensus       123 ----ni~~i~~d~~~~~~------~~~~~~~v~~i~~~~~~~~~~~~~l~~~  164 (230)
T d1g8sa_         123 ----NIIPILGDANKPQE------YANIVEKVDVIYEDVAQPNQAEILIKNA  164 (230)
T ss_dssp             ----TEEEEECCTTCGGG------GTTTCCCEEEEEECCCSTTHHHHHHHHH
T ss_pred             ----ccceEEEeeccCcc------cccccceeEEeeccccchHHHHHHHHHH
Confidence                33333333333321      12345677555555554 3333334433

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.16  E-value=1.9e-11  Score=87.06  Aligned_cols=95  Identities=17%  Similarity=0.184  Sum_probs=65.4

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-h
Q 030274           73 LQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-K  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  150 (180)
                      ..+.+||||.||||.+|+.+...|+ +|+++|.+..+++.+++|++..+..     .....+...     +....+.. .
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~-----~~~~~~~~~-----d~~~~l~~~~  111 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS-----SEQAEVINQ-----SSLDFLKQPQ  111 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----TTTEEEECS-----CHHHHTTSCC
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc-----ccccccccc-----cccccccccc
Confidence            3678999999999999998888775 9999999999999999999987522     112222221     11111111 1


Q ss_pred             CCCCCcEEEEccccccCCchhhHHHHH
Q 030274          151 YPGGFDLILGADIYILYNRSLLMTSFF  177 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~~l~~~~~  177 (180)
                      ...+||+|++.|||-......+++.+.
T Consensus       112 ~~~~fDlIFlDPPY~~~~~~~~l~~l~  138 (183)
T d2ifta1         112 NQPHFDVVFLDPPFHFNLAEQAISLLC  138 (183)
T ss_dssp             SSCCEEEEEECCCSSSCHHHHHHHHHH
T ss_pred             cCCcccEEEechhHhhhhHHHHHHHHH
Confidence            245799999999975544445555443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=4.6e-11  Score=86.14  Aligned_cols=81  Identities=16%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ++.+|||||||+|..+..++    +++++|.|+.+++.++++    +          +.+...+..+.       +....
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~----~----------~~~~~~d~~~l-------~~~~~   90 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR----G----------VFVLKGTAENL-------PLKDE   90 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT----T----------CEEEECBTTBC-------CSCTT
T ss_pred             CCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc----c----------ccccccccccc-------ccccc
Confidence            45589999999998877664    578999999999998864    2          33444443322       12357


Q ss_pred             CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274          154 GFDLILGADIYIL-YNRSLLMTSFFQA  179 (180)
Q Consensus       154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a  179 (180)
                      +||+|+++.++++ .+....++.+.+.
T Consensus        91 ~fD~I~~~~~l~h~~d~~~~l~~~~~~  117 (208)
T d1vlma_          91 SFDFALMVTTICFVDDPERALKEAYRI  117 (208)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhhhhc
Confidence            8999999999988 5655556555543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.14  E-value=2.1e-10  Score=85.35  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=68.3

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .+.++|||||||+|..++.+++.  +.+++++|. +.+++.+++++...+.      ..++.+...++...         
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~------~~rv~~~~~D~~~~---------  142 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL------SDRVDVVEGDFFEP---------  142 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC------TTTEEEEECCTTSC---------
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc------ccchhhccccchhh---------
Confidence            35579999999999999999886  478999998 6799999999988762      34577776665432         


Q ss_pred             CCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          151 YPGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                      .+.+||+|+++.++++...+   .+++.+.++
T Consensus       143 ~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~  174 (253)
T d1tw3a2         143 LPRKADAIILSFVLLNWPDHDAVRILTRCAEA  174 (253)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred             cccchhheeeccccccCCchhhHHHHHHHHHh
Confidence            24579999999998874333   445555544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=7e-11  Score=86.63  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...++.+|||+|||+|+.+..+|+.   ..+|+++|.++++++.+++|++..+....  ...++.+..   ++....   
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~--~~~~~~~~~---gD~~~~---  144 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL--SSGRVQLVV---GDGRMG---  144 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH--HTSSEEEEE---SCGGGC---
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccc--cccceEEEE---eecccc---
Confidence            3457889999999999999999885   36999999999999999999987542100  011233332   332111   


Q ss_pred             HhhCCCCCcEEEEcccccc
Q 030274          148 IQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       148 ~~~~~~~fD~Ii~~d~~y~  166 (180)
                       .....+||+|+++..+.+
T Consensus       145 -~~~~~~fD~I~~~~~~~~  162 (224)
T d1i1na_         145 -YAEEAPYDAIHVGAAAPV  162 (224)
T ss_dssp             -CGGGCCEEEEEECSBBSS
T ss_pred             -cchhhhhhhhhhhcchhh
Confidence             012458999999887654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5e-11  Score=87.61  Aligned_cols=77  Identities=21%  Similarity=0.267  Sum_probs=54.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+|||||||+|..+..+++.+ .+|+++|+|+.+++.|++++....        .++.....++..   ..  .....
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--------~~~~~~~~~~~~---~~--~~~~~  119 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------HKVIPLKGLWED---VA--PTLPD  119 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--------SEEEEEESCHHH---HG--GGSCT
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--------cccccccccccc---cc--ccccc
Confidence            57799999999999999998864 789999999999999999977653        122232222221   11  12245


Q ss_pred             CCCcEEEEccc
Q 030274          153 GGFDLILGADI  163 (180)
Q Consensus       153 ~~fD~Ii~~d~  163 (180)
                      ++||.|+...+
T Consensus       120 ~~fD~i~fD~~  130 (229)
T d1zx0a1         120 GHFDGILYDTY  130 (229)
T ss_dssp             TCEEEEEECCC
T ss_pred             ccccceeeccc
Confidence            78999986443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.07  E-value=5.2e-10  Score=83.66  Aligned_cols=95  Identities=15%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             ceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274           53 QLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA  129 (180)
Q Consensus        53 ~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~  129 (180)
                      +.++|.-..+   +.......++.+|||+|||+|..++.+|+.   ..+|+++|.++++++.|++|++.....    ...
T Consensus        78 qiiypkD~s~---Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~----~~~  150 (264)
T d1i9ga_          78 QVIYPKDAAQ---IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ----PPD  150 (264)
T ss_dssp             CCCCHHHHHH---HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS----CCT
T ss_pred             cccchHHHHH---HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC----CCc
Confidence            3455544333   223334458999999999999999999985   369999999999999999999874311    122


Q ss_pred             cEEEEEeecCCCchhhHHHhhCCCCCcEEEEc
Q 030274          130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGA  161 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~  161 (180)
                      ++.+...+..+.       +.....||.|+..
T Consensus       151 nv~~~~~d~~~~-------~~~~~~fDaV~ld  175 (264)
T d1i9ga_         151 NWRLVVSDLADS-------ELPDGSVDRAVLD  175 (264)
T ss_dssp             TEEEECSCGGGC-------CCCTTCEEEEEEE
T ss_pred             eEEEEecccccc-------cccCCCcceEEEe
Confidence            344443332221       1135689998863

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=7e-10  Score=81.29  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             CceecchH-HHHHHHHhh---CCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHh
Q 030274           52 GQLVWPGA-MLMNDYLSK---NPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        52 g~~~w~~~-~~l~~~l~~---~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..+.|+.- -.|+..+.+   ...+.+|.+|||||||+|..+..+|+.   ..+|+++|+++.+++.++.+++..
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~  121 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER  121 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC
T ss_pred             eEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc
Confidence            45566543 245555543   334668999999999999999999985   369999999999999999987654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3e-10  Score=84.17  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=41.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhc
Q 030274           73 LQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      .++.+|||||||+|..++.++..+ .+|+++|+|+.+++.|+++++.+.
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            467899999999999888777665 579999999999999999987664

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=7.3e-10  Score=83.05  Aligned_cols=58  Identities=21%  Similarity=0.364  Sum_probs=49.1

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      +.++....+..++.+|||+|||+|.+++.+|+.   +.+|+++|.++++++.|++|++..+
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g  152 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG  152 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc
Confidence            334444455668999999999999999999975   3699999999999999999999876

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.02  E-value=2.3e-09  Score=79.86  Aligned_cols=91  Identities=12%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ...++|||||||+|..+..+++.  ..+++++|+ +++++.+++++...+.      ..++.+...+....         
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~------~~ri~~~~~d~~~~---------  143 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL------ADRVTVAEGDFFKP---------  143 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC------TTTEEEEECCTTSC---------
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC------cceeeeeeeecccc---------
Confidence            35578999999999999999886  579999998 7899999999988762      34566665554432         


Q ss_pred             CCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          151 YPGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                      .+.+||+|+++.++++...+   .+++.+.++
T Consensus       144 ~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~  175 (256)
T d1qzza2         144 LPVTADVVLLSFVLLNWSDEDALTILRGCVRA  175 (256)
T ss_dssp             CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccccccccCcHHHHHHHHHHHhh
Confidence            24579999999999874433   445555544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.5e-09  Score=82.14  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=57.7

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCC----CCCCCCCcEEEEEeecCCCch
Q 030274           71 DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSS----ENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~----~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      ...++.+|||+|||+|.+++.+|+.   ..+|+++|.++++++.|++|++..+..    .......++.+..-+......
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            3458899999999999999999985   369999999999999999999875311    111223456666555443311


Q ss_pred             hhHHHhhCCCCCcEEEE
Q 030274          144 INKIIQKYPGGFDLILG  160 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~  160 (180)
                        .   .....||.|+.
T Consensus       175 --~---~~~~~fD~V~L  186 (324)
T d2b25a1         175 --D---IKSLTFDAVAL  186 (324)
T ss_dssp             -----------EEEEEE
T ss_pred             --c---cCCCCcceEee
Confidence              1   12457898886

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.2e-09  Score=81.82  Aligned_cols=73  Identities=14%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+|+.+++.++++..            ++.+...+..+.       +..
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~------------~~~~~~~d~~~l-------~~~  144 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------------QVTFCVASSHRL-------PFS  144 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------------TSEEEECCTTSC-------SBC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc------------cccceeeehhhc-------cCC
Confidence            6679999999999999998886  4699999999999999887521            233444444332       224


Q ss_pred             CCCCcEEEEccccc
Q 030274          152 PGGFDLILGADIYI  165 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y  165 (180)
                      .++||+|++.....
T Consensus       145 ~~sfD~v~~~~~~~  158 (268)
T d1p91a_         145 DTSMDAIIRIYAPC  158 (268)
T ss_dssp             TTCEEEEEEESCCC
T ss_pred             CCCEEEEeecCCHH
Confidence            67899999876543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=1.9e-09  Score=78.74  Aligned_cols=86  Identities=16%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhcC--------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           71 DVLQASSILELGSGVGVTGILCSRFC--------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~~--------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +..++.+|||+|||+|+.+..+++..        .+|+++|.++++++.+++|+...+...  ....++.+...+-....
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~--~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM--LDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH--HHHTSEEEEESCGGGCC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh--cCccEEEEEeccccccc
Confidence            44578899999999999999988752        489999999999999999976542100  00123444443322211


Q ss_pred             hhhHHHhhCCCCCcEEEEccccc
Q 030274          143 QINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                             ...++||.|+..-.+.
T Consensus       155 -------~~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         155 -------PPNAPYNAIHVGAAAP  170 (223)
T ss_dssp             -------GGGCSEEEEEECSCBS
T ss_pred             -------ccccceeeEEEEeech
Confidence                   1245899999987664

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.6e-10  Score=82.77  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             CCCCCeEEEeCCcCChHHHHHh-hcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCS-RFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..++.++||+|||+|..++..+ +.+.+|+++|+++.+++.+++++...
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcC
Confidence            4578899999999998776544 55779999999999999999887543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=2.8e-09  Score=84.05  Aligned_cols=52  Identities=13%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             hCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHh
Q 030274           68 KNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      +...+.++.++||||||+|.+.+.+|+. + ++|+|+|+++.+++.|+++++..
T Consensus       210 ~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         210 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            3344568889999999999999988865 4 68999999999999999998764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.6e-09  Score=81.49  Aligned_cols=106  Identities=8%  Similarity=0.043  Sum_probs=66.6

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCC--CCCCCCcEEEEEeecC
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSE--NPNSDAGLAVAKLEWG  139 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~--~~~~~~~~~~~~~~~~  139 (180)
                      ..+.+.....++.+|||||||+|.+.+.+|+. + .+++|+|+++.+++.|+++++..+...  ......++.+.+.++.
T Consensus       141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            33444445557889999999999999988864 3 589999999999999998876532000  0001234666666655


Q ss_pred             CCchhhHHHhhCCCCCcEEEEccccccCCchhhHH
Q 030274          140 NSDQINKIIQKYPGGFDLILGADIYILYNRSLLMT  174 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~  174 (180)
                      +.+-.+.     ....|+|+++...|..+....+.
T Consensus       221 ~~~~~~~-----~~~advi~~~~~~f~~~~~~~l~  250 (328)
T d1nw3a_         221 SEEWRER-----IANTSVIFVNNFAFGPEVDHQLK  250 (328)
T ss_dssp             SHHHHHH-----HHHCSEEEECCTTTCHHHHHHHH
T ss_pred             ccccccc-----cCcceEEEEcceecchHHHHHHH
Confidence            4321111     12468999887665544333333

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.87  E-value=5.5e-09  Score=76.79  Aligned_cols=89  Identities=18%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....         .++.+...|....
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---------~n~~i~~~D~l~~   79 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---------DNFQVLNKDILQF   79 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---------CSEEEECCCGGGC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---------cchhhhhhhhhhc
Confidence            4555666666668899999999999999999999999999999999999999876443         2455554433322


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +       ........|++|=||+-
T Consensus        80 ~-------~~~~~~~~vv~NLPYnI   97 (235)
T d1qama_          80 K-------FPKNQSYKIFGNIPYNI   97 (235)
T ss_dssp             C-------CCSSCCCEEEEECCGGG
T ss_pred             c-------ccccccceeeeeehhhh
Confidence            1       01233456778877765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=6.9e-09  Score=74.69  Aligned_cols=80  Identities=10%  Similarity=0.095  Sum_probs=58.3

Q ss_pred             CCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           75 ASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      +..|||||||+|...+.+|+.  ...++|+|+++.++..+.+++..++.       .++.+...   +...+...  ..+
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-------~Nv~~~~~---Da~~l~~~--~~~   97 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-------QNVKLLNI---DADTLTDV--FEP   97 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-------SSEEEECC---CGGGHHHH--CCT
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-------cCchhccc---chhhhhcc--cCc
Confidence            347999999999999999886  47999999999999999999998873       24444433   32222211  246


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      +++|.|...-|..+
T Consensus        98 ~~~d~v~i~fp~P~  111 (204)
T d2fcaa1          98 GEVKRVYLNFSDPW  111 (204)
T ss_dssp             TSCCEEEEESCCCC
T ss_pred             hhhhcccccccccc
Confidence            78998877765544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.7e-08  Score=73.86  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +++.+.+.....++..|||+|+|+|.++..+++.+.+|+++|.++.+++.+++++....      ...++.+...|+...
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~------~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTP------VASKLQVLVGDVLKT   82 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTST------TGGGEEEEESCTTTS
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhc------cccchhhhHHHHhhh
Confidence            34444444455577899999999999999999999999999999999999998876542      123566777776654


Q ss_pred             chhhHHHhhCCCCCcEEEEcccccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      +         ...++.||+|=|||-
T Consensus        83 ~---------~~~~~~vV~NLPY~I   98 (278)
T d1zq9a1          83 D---------LPFFDTCVANLPYQI   98 (278)
T ss_dssp             C---------CCCCSEEEEECCGGG
T ss_pred             h---------hhhhhhhhcchHHHH
Confidence            3         235678999988865

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.71  E-value=1.2e-07  Score=67.98  Aligned_cols=79  Identities=13%  Similarity=0.025  Sum_probs=59.2

Q ss_pred             CeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ..|||||||+|-..+.+|+.  ...++|+|+++.++..+.+++..++.       .++.+...+...   +...  ....
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-------~Ni~~~~~da~~---l~~~--~~~~  100 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-------PNIKLLWVDGSD---LTDY--FEDG  100 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-------SSEEEEECCSSC---GGGT--SCTT
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-------ccceeeecCHHH---Hhhh--ccCC
Confidence            47999999999999988886  57999999999999999999988863       356666555443   2211  1456


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      ++|.|...-|-.+
T Consensus       101 ~~~~i~i~fPdPw  113 (204)
T d1yzha1         101 EIDRLYLNFSDPW  113 (204)
T ss_dssp             CCSEEEEESCCCC
T ss_pred             ceehhcccccccc
Confidence            8998887765443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=1.4e-08  Score=77.93  Aligned_cols=98  Identities=9%  Similarity=0.015  Sum_probs=66.2

Q ss_pred             CceecchH--HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-------CCeEEEecCCHHHHHHHHHHHHHhcCC
Q 030274           52 GQLVWPGA--MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-------CREVLLTDHNEEVLKILKKNIEHHTSS  122 (180)
Q Consensus        52 g~~~w~~~--~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-------~~~V~~~D~~~~~l~~~~~n~~~n~~~  122 (180)
                      |...-|..  ..|+..+.......++.+|||.|||+|.+.+.+...       ..+++++|+++.++..|+.|+..++. 
T Consensus        93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-  171 (328)
T d2f8la1          93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-  171 (328)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-
T ss_pred             CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-
Confidence            44444655  345555544333335678999999999888776532       13799999999999999999988862 


Q ss_pred             CCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          123 ENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                             .......++...        ....+||+|+++||+-
T Consensus       172 -------~~~~~~~d~~~~--------~~~~~fD~vi~NPPy~  199 (328)
T d2f8la1         172 -------KMTLLHQDGLAN--------LLVDPVDVVISDLPVG  199 (328)
T ss_dssp             -------CCEEEESCTTSC--------CCCCCEEEEEEECCCS
T ss_pred             -------hhhhhccccccc--------cccccccccccCCCCC
Confidence                   223333333222        1356899999999973

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=4.3e-08  Score=70.95  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=43.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTS  121 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~  121 (180)
                      +.++|||+|||+|..++.+|+.   +.+|+++|.++..++.+++|++..+.
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl  106 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL  106 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC
Confidence            5579999999999999999874   57999999999999999999999873

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.66  E-value=6.7e-10  Score=82.26  Aligned_cols=87  Identities=11%  Similarity=0.185  Sum_probs=60.2

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      +.+.+.....++.+|||||||+|.++..+++.+.+|+++|.++.+++.+++++...         .++.+.+.|..+.+ 
T Consensus        19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~---------~n~~ii~~D~l~~~-   88 (245)
T d1yuba_          19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN---------TRVTLIHQDILQFQ-   88 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC---------SEEEECCSCCTTTT-
T ss_pred             HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhc---------cchhhhhhhhhccc-
Confidence            33444344446789999999999999999999999999999998888877654332         23444444444322 


Q ss_pred             hhHHHhhCCCCCcEEEEcccccc
Q 030274          144 INKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                            .....++.|++|=|||-
T Consensus        89 ------~~~~~~~~vv~NLPY~I  105 (245)
T d1yuba_          89 ------FPNKQRYKIVGNIPYHL  105 (245)
T ss_dssp             ------CCCSSEEEEEEECCSSS
T ss_pred             ------cccceeeeEeeeeehhh
Confidence                  12345667888877654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.3e-08  Score=72.66  Aligned_cols=79  Identities=13%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch-hhHHHh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ-INKIIQ  149 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  149 (180)
                      +.++|||+|||+|+.++++|+.   +.+|+.+|.+++..+.|++|++..+..      .++++.   .++..+ +..+..
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~------~~i~~~---~Gda~e~l~~~~~  129 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE------HKIDLR---LKPALETLDELLA  129 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT------TTEEEE---ESCHHHHHHHHHH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc------ceEEEE---Eeehhhcchhhhh
Confidence            5679999999999999999874   579999999999999999999998743      334443   333211 222222


Q ss_pred             -hCCCCCcEEEEc
Q 030274          150 -KYPGGFDLILGA  161 (180)
Q Consensus       150 -~~~~~fD~Ii~~  161 (180)
                       ....+||+|+..
T Consensus       130 ~~~~~~fD~ifiD  142 (219)
T d2avda1         130 AGEAGTFDVAVVD  142 (219)
T ss_dssp             TTCTTCEEEEEEC
T ss_pred             hcccCCccEEEEe
Confidence             235679988875

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.6e-08  Score=73.81  Aligned_cols=85  Identities=11%  Similarity=0.155  Sum_probs=59.2

Q ss_pred             CCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           71 DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ...++..|||+|||+|.++..+++.+.+|+++|+++.+++.+++....+         .++.+...|....+ ...+.+.
T Consensus        18 ~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---------~~~~ii~~D~l~~~-~~~~~~~   87 (252)
T d1qyra_          18 NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG---------PKLTIYQQDAMTFN-FGELAEK   87 (252)
T ss_dssp             CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG---------GGEEEECSCGGGCC-HHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc---------cchhHHhhhhhhhc-ccccccc
Confidence            3446789999999999999999999999999999999999998754333         24555555444332 1222111


Q ss_pred             CCCCCcEEEEcccccc
Q 030274          151 YPGGFDLILGADIYIL  166 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~  166 (180)
                      . ++.-.|++|=|||-
T Consensus        88 ~-~~~~~vvgNlPY~I  102 (252)
T d1qyra_          88 M-GQPLRVFGNLPYNI  102 (252)
T ss_dssp             H-TSCEEEEEECCTTT
T ss_pred             c-CCCeEEEecchHHH
Confidence            1 23347888888766

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.47  E-value=6.3e-08  Score=70.62  Aligned_cols=80  Identities=16%  Similarity=0.182  Sum_probs=57.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +.++|||+|+++|+.++++|+.   +.+|+.+|.+++..+.|++|++..+..      .++.+...+...  .+..+...
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~------~~i~~~~g~a~~--~L~~l~~~  130 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD------HKIDFREGPALP--VLDEMIKD  130 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG------GGEEEEESCHHH--HHHHHHHC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc------cceeeeehHHHH--HHHHHHhc
Confidence            5679999999999999999863   579999999999999999999998732      344444332221  12222211


Q ss_pred             --CCCCCcEEEEc
Q 030274          151 --YPGGFDLILGA  161 (180)
Q Consensus       151 --~~~~fD~Ii~~  161 (180)
                        ..++||+|+..
T Consensus       131 ~~~~~~fD~iFiD  143 (227)
T d1susa1         131 EKNHGSYDFIFVD  143 (227)
T ss_dssp             GGGTTCBSEEEEC
T ss_pred             cccCCceeEEEec
Confidence              24579988764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=5e-07  Score=64.77  Aligned_cols=75  Identities=16%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++.+++|+|||.|++|+.+|-.  ..+|+++|.+..-+..++.-+...++       .++.+.+-+..+..        .
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-------~nv~v~~~R~E~~~--------~  129 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-------ENIEPVQSRVEEFP--------S  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-------SSEEEEECCTTTSC--------C
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-------cceeeeccchhhhc--------c
Confidence            4579999999999999999975  47999999999888888877777652       24666655544421        2


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      ..+||+|++.-+
T Consensus       130 ~~~fD~V~sRA~  141 (207)
T d1jsxa_         130 EPPFDGVISRAF  141 (207)
T ss_dssp             CSCEEEEECSCS
T ss_pred             ccccceehhhhh
Confidence            357999998664

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=2.1e-07  Score=66.04  Aligned_cols=79  Identities=18%  Similarity=0.191  Sum_probs=57.8

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..++..+||++||+|..+..+++.  +.+|+++|.++.+++.++++++..+        .++.+.+..+.+..   ....
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--------~r~~~~~~~f~~~~---~~~~   89 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--------DRVSLFKVSYREAD---FLLK   89 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--------TTEEEEECCGGGHH---HHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--------ccccchhHHHhhHH---HHHH
Confidence            347789999999999887777664  5799999999999999999987753        34556665555432   2222


Q ss_pred             -hCCCCCcEEEEc
Q 030274          150 -KYPGGFDLILGA  161 (180)
Q Consensus       150 -~~~~~fD~Ii~~  161 (180)
                       ....+||.|+..
T Consensus        90 ~~~~~~vdgIl~D  102 (192)
T d1m6ya2          90 TLGIEKVDGILMD  102 (192)
T ss_dssp             HTTCSCEEEEEEE
T ss_pred             HcCCCCcceeeec
Confidence             234689988764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.36  E-value=5.7e-07  Score=70.05  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhh-cC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCC--------CCcEEEEEeecCCCch
Q 030274           74 QASSILELGSGVGVTGILCSR-FC-REVLLTDHNEEVLKILKKNIEHHTSSENPNS--------DAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~--------~~~~~~~~~~~~~~~~  143 (180)
                      ++.+|||..||||.-|+..|+ .+ .+|++.|+|+.+++.+++|++.|+.......        ...+.+...+.     
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da-----  119 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA-----  119 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH-----
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh-----
Confidence            567999999999999997776 34 5899999999999999999999974321000        01111222111     


Q ss_pred             hhHHHhhCCCCCcEEEEccccccCCchhhHHHHHHh
Q 030274          144 INKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQA  179 (180)
Q Consensus       144 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~a  179 (180)
                       ..++......||+|...|  | -.....+++-+++
T Consensus       120 -~~~~~~~~~~fDvIDiDP--f-Gs~~pfldsAi~a  151 (375)
T d2dula1         120 -NRLMAERHRYFHFIDLDP--F-GSPMEFLDTALRS  151 (375)
T ss_dssp             -HHHHHHSTTCEEEEEECC--S-SCCHHHHHHHHHH
T ss_pred             -hhhhHhhcCcCCcccCCC--C-CCcHHHHHHHHHH
Confidence             112233456899998887  2 3334455555444

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.22  E-value=2.6e-07  Score=66.42  Aligned_cols=81  Identities=15%  Similarity=0.092  Sum_probs=53.1

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE  137 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~  137 (180)
                      .++++|.+.....++.+|||.|||+|.+...+.+.   ..+++++|+++.++..++.                ..+...+
T Consensus         6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~----------------~~~~~~~   69 (223)
T d2ih2a1           6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW----------------AEGILAD   69 (223)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT----------------EEEEESC
T ss_pred             HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc----------------ceeeeee
Confidence            35566665555557789999999999876666542   4689999999865433221                1233333


Q ss_pred             cCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274          138 WGNSDQINKIIQKYPGGFDLILGADIYI  165 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~fD~Ii~~d~~y  165 (180)
                      +...        ....+||+|++++|+-
T Consensus        70 ~~~~--------~~~~~fd~ii~npP~~   89 (223)
T d2ih2a1          70 FLLW--------EPGEAFDLILGNPPYG   89 (223)
T ss_dssp             GGGC--------CCSSCEEEEEECCCCC
T ss_pred             hhcc--------ccccccceecccCccc
Confidence            3322        1346899999999963

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=3.9e-06  Score=61.22  Aligned_cols=79  Identities=14%  Similarity=0.265  Sum_probs=53.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ...+++|+|+|.|++|+.+|-.  ..+|+.+|.+..-+..++.-+...++.       ++.+.+   ...+.+... ...
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-------n~~i~~---~R~E~~~~~-~~~  138 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-------NTTFCH---DRAETFGQR-KDV  138 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-------SEEEEE---SCHHHHTTC-TTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-------CcEEEe---ehhhhcccc-ccc
Confidence            4679999999999999999864  579999999998777777666665522       233332   222221110 112


Q ss_pred             CCCCcEEEEccc
Q 030274          152 PGGFDLILGADI  163 (180)
Q Consensus       152 ~~~fD~Ii~~d~  163 (180)
                      ..+||+|++--+
T Consensus       139 ~~~~D~v~sRAv  150 (239)
T d1xdza_         139 RESYDIVTARAV  150 (239)
T ss_dssp             TTCEEEEEEECC
T ss_pred             cccceEEEEhhh
Confidence            468999998653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.03  E-value=5.7e-06  Score=65.28  Aligned_cols=99  Identities=12%  Similarity=0.103  Sum_probs=65.4

Q ss_pred             cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---------------CCeEEEecCCHHHHHHHHHH
Q 030274           51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---------------CREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---------------~~~V~~~D~~~~~l~~~~~n  115 (180)
                      .|...-|..  +++++.+......+.+|+|-.||+|.+.+.+.+.               ...+.+.|+++.+...++.|
T Consensus       141 ~G~f~TP~~--Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n  218 (425)
T d2okca1         141 AGQYFTPRP--LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN  218 (425)
T ss_dssp             CGGGCCCHH--HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             chhhccchh--hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence            355454443  4555555444446779999999999887776553               13589999999999999999


Q ss_pred             HHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          116 IEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       116 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      +..++...     ....+..-+....        ....+||+||+|||+
T Consensus       219 ~~l~g~~~-----~~~~i~~~d~l~~--------~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         219 LYLHGIGT-----DRSPIVCEDSLEK--------EPSTLVDVILANPPF  254 (425)
T ss_dssp             HHHTTCCS-----SCCSEEECCTTTS--------CCSSCEEEEEECCCS
T ss_pred             hhhcCCcc-----ccceeecCchhhh--------hcccccceEEecCCC
Confidence            98876321     1111222222211        134689999999997

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.99  E-value=3.5e-05  Score=54.23  Aligned_cols=52  Identities=13%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             HHHHHHhhCCCCCCCCeEEEeCCcCCh----HHHHHhhc----C--CeEEEecCCHHHHHHHHHH
Q 030274           61 LMNDYLSKNPDVLQASSILELGSGVGV----TGILCSRF----C--REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~----~~l~la~~----~--~~V~~~D~~~~~l~~~~~n  115 (180)
                      .|.+.+....   +..+|++.|||+|-    +++.+...    +  .++++||+++.+++.|++.
T Consensus        14 ~L~~~~~~~~---~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          14 ILAEHARRRH---GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             HHHHHHHHSC---SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHhccC---CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            3444444332   44599999999995    33333322    1  3799999999999999854

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.3e-05  Score=58.83  Aligned_cols=92  Identities=11%  Similarity=0.039  Sum_probs=63.2

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      ++...+..+..    .++.+|||++||.|.=++.+|..   ..+|+++|.++.-++.+++|++..+..       ++.+.
T Consensus        82 sS~l~~~~L~~----~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-------~~~~~  150 (293)
T d2b9ea1          82 ASCLPAMLLDP----PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-------CCELA  150 (293)
T ss_dssp             GGGHHHHHHCC----CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-------SEEEE
T ss_pred             cccccccccCC----CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-------ceeee
Confidence            34555555432    36789999999999877777653   468999999999999999999998732       34444


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ..+........    ...++||.|+...|.
T Consensus       151 ~~d~~~~~~~~----~~~~~fD~VL~DaPC  176 (293)
T d2b9ea1         151 EEDFLAVSPSD----PRYHEVHYILLDPSC  176 (293)
T ss_dssp             ECCGGGSCTTC----GGGTTEEEEEECCCC
T ss_pred             ehhhhhhcccc----cccceeeEEeecCcc
Confidence            44433221110    113579999998873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.88  E-value=3e-05  Score=56.61  Aligned_cols=83  Identities=14%  Similarity=0.113  Sum_probs=57.0

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      ....+|||||||+|..++.+++.  ..+++..|. +.+++.       ..      ...++.....++.+.         
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~------~~~ri~~~~gd~~~~---------  136 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------AP------PLSGIEHVGGDMFAS---------  136 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CC------CCTTEEEEECCTTTC---------
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------cC------CCCCeEEecCCcccc---------
Confidence            34579999999999999988875  579999998 555431       11      234677777666532         


Q ss_pred             CCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          151 YPGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       151 ~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                      .+ ..|+++.+.++++...+   .+++.+.+|
T Consensus       137 ~p-~~D~~~l~~vLh~~~de~~~~iL~~~~~a  167 (244)
T d1fp1d2         137 VP-QGDAMILKAVCHNWSDEKCIEFLSNCHKA  167 (244)
T ss_dssp             CC-CEEEEEEESSGGGSCHHHHHHHHHHHHHH
T ss_pred             cc-cceEEEEehhhhhCCHHHHHHHHHHHHHH
Confidence            12 45999999999885443   345555444

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.86  E-value=1.3e-05  Score=60.75  Aligned_cols=79  Identities=13%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||.||.|.|.....+.+.  ..+|+++|+++.+++.+++.+...+...  ....++++.   +++.  .. .+...
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~--~~d~rv~i~---~~Da--~~-~l~~~  148 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA--FDDPRAVLV---IDDA--RA-YLERT  148 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG--GGCTTEEEE---ESCH--HH-HHHHC
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc--cCCCceEEE---EchH--HH-Hhhhc
Confidence            4579999999999888877765  3699999999999999999875432110  012344444   3332  11 23345


Q ss_pred             CCCCcEEEE
Q 030274          152 PGGFDLILG  160 (180)
Q Consensus       152 ~~~fD~Ii~  160 (180)
                      ..+||+|+.
T Consensus       149 ~~~yDvIi~  157 (312)
T d1uira_         149 EERYDVVII  157 (312)
T ss_dssp             CCCEEEEEE
T ss_pred             CCcccEEEE
Confidence            678999995

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.80  E-value=5.2e-05  Score=55.39  Aligned_cols=85  Identities=9%  Similarity=0.164  Sum_probs=56.7

Q ss_pred             CeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCC--CCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           76 SSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENP--NSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+|||+-||.|.-++.+|..|++|+++|.++.+...++.+++........  ....++++.   +++.  .+. +.....
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li---~~Ds--~~~-L~~~~~  163 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI---HASS--LTA-LTDITP  163 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE---ESCH--HHH-STTCSS
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheee---cCcH--HHH-HhccCC
Confidence            48999999999999999999999999999998888888877654311000  000123333   3332  222 223356


Q ss_pred             CCcEEEEcccccc
Q 030274          154 GFDLILGADIYIL  166 (180)
Q Consensus       154 ~fD~Ii~~d~~y~  166 (180)
                      +||+|...|++-.
T Consensus       164 ~~DvIYlDPMFp~  176 (250)
T d2oyra1         164 RPQVVYLDPMFPH  176 (250)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCcc
Confidence            7999998665533

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.80  E-value=2.4e-05  Score=57.14  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ...+|||+|||+|..++.+++.  ..+++..|. +.+++.+.             ...++++...++.+.          
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-------------~~~rv~~~~gD~f~~----------  135 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-------------GSNNLTYVGGDMFTS----------  135 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------------CBTTEEEEECCTTTC----------
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc-------------ccCceEEEecCcccC----------
Confidence            3468999999999999988876  579999999 55554321             134677777776542          


Q ss_pred             CCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274          152 PGGFDLILGADIYILYNRS---LLMTSFFQA  179 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a  179 (180)
                      ...+|+++...++++-..+   .+++.+.+|
T Consensus       136 ~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~a  166 (244)
T d1fp2a2         136 IPNADAVLLKYILHNWTDKDCLRILKKCKEA  166 (244)
T ss_dssp             CCCCSEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeecccCChHHHHHHHHHHHHH
Confidence            2368999999999884444   455555554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=0.00011  Score=54.65  Aligned_cols=91  Identities=16%  Similarity=0.062  Sum_probs=62.0

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVA  134 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  134 (180)
                      .++...+..|.    ..++.+|||++||.|.=++.++..+  .+|+++|.++.-++.+++|++..+..          +.
T Consensus        89 ~sS~l~~~~L~----~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~----------~~  154 (284)
T d1sqga2          89 ASAQGCMTWLA----PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK----------AT  154 (284)
T ss_dssp             HHHHTHHHHHC----CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC----------CE
T ss_pred             ccccccccccC----ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc----------ce
Confidence            44555555543    2367899999999998777776653  68999999999999999999998732          12


Q ss_pred             EeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          135 KLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                      ..........   ......+||.|+...|+
T Consensus       155 ~~~~~~~~~~---~~~~~~~fd~IL~DaPC  181 (284)
T d1sqga2         155 VKQGDGRYPS---QWCGEQQFDRILLDAPC  181 (284)
T ss_dssp             EEECCTTCTH---HHHTTCCEEEEEEECCC
T ss_pred             eeeccccccc---hhcccccccEEEEeccc
Confidence            2222221111   11245689999998775

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.64  E-value=8.3e-05  Score=55.12  Aligned_cols=80  Identities=19%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||-||.|.|..+..+.+.  ..+|+++|+++.+++.+++.+..+...   ....++.+..   .+.  ... +...
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~---~~d~r~~i~~---~D~--~~~-l~~~  145 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK---LDDPRVDVQV---DDG--FMH-IAKS  145 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT---TTSTTEEEEE---SCS--HHH-HHTC
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc---ccCCCeEEEe---chH--HHH-Hhhc
Confidence            4579999999999998888875  369999999999999999988665411   1123444443   222  222 3345


Q ss_pred             CCCCcEEEEcc
Q 030274          152 PGGFDLILGAD  162 (180)
Q Consensus       152 ~~~fD~Ii~~d  162 (180)
                      ..+||+|+...
T Consensus       146 ~~~yDvIi~D~  156 (274)
T d1iy9a_         146 ENQYDVIMVDS  156 (274)
T ss_dssp             CSCEEEEEESC
T ss_pred             CCCCCEEEEcC
Confidence            67899999764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=5.2e-05  Score=56.82  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=54.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||-||.|.|...-.+.+.  ..+|+++|+++.+++.+++.+..+....   ...++.+..   ++.  .. ++...
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~---~d~rv~v~~---~Da--~~-~l~~~  159 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF---DDPRAEIVI---ANG--AE-YVRKF  159 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG---GCTTEEEEE---SCH--HH-HGGGC
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc---cCCCcEEEh---hhH--HH-HHhcC
Confidence            4579999999999888777775  3689999999999999998876653110   123444443   222  22 23445


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      ..+||+|+..
T Consensus       160 ~~~yDvIi~D  169 (295)
T d1inla_         160 KNEFDVIIID  169 (295)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCCCEEEEc
Confidence            6789999964

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.3e-05  Score=63.40  Aligned_cols=105  Identities=11%  Similarity=0.059  Sum_probs=63.7

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--------------------CCeEEEecCCHHHHHH
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--------------------CREVLLTDHNEEVLKI  111 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--------------------~~~V~~~D~~~~~l~~  111 (180)
                      |...-|..  +++++.+......+.+|+|-.||+|.+.+.+.+.                    ...+++.|.++.+...
T Consensus       144 GqfyTP~~--Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         144 GQYFTPRP--LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             -CCCCCHH--HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             chhccccc--hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            55444443  4555555444446779999999999877765442                    1258999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274          112 LKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus       112 ~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                      ++-|+-..+........     ..+.+++.....   .....+||+||+|||+-.
T Consensus       222 a~~nl~l~~~~~~i~~~-----~~~~~~~~l~~d---~~~~~kfD~Ii~NPPfg~  268 (524)
T d2ar0a1         222 ALMNCLLHDIEGNLDHG-----GAIRLGNTLGSD---GENLPKAHIVATNPPFGS  268 (524)
T ss_dssp             HHHHHHTTTCCCBGGGT-----BSEEESCTTSHH---HHTSCCEEEEEECCCCTT
T ss_pred             HHHHHHhhccccccccc-----chhhhhhhhhhc---ccccccceeEEecCCccc
Confidence            99999887632100000     011111111000   113468999999999843

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.51  E-value=9.2e-05  Score=53.58  Aligned_cols=57  Identities=16%  Similarity=0.190  Sum_probs=48.0

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ..|.+.+.+... .++..|||-.||+|..++++.+.|.+.+++|++++-++.|+++++
T Consensus       199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            456665555432 367899999999999999999999999999999999999999875

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.50  E-value=0.00039  Score=52.33  Aligned_cols=90  Identities=16%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .++...+..|.    ..++.+|||++||.|.=++.++..   ...+++.|.++.-+..++.|++..+..       ++  
T Consensus       103 ~aS~l~~~~l~----~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-------~i--  169 (313)
T d1ixka_         103 ASSMYPPVALD----PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-------NV--  169 (313)
T ss_dssp             HHHHHHHHHHC----CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-------SE--
T ss_pred             ccccchhhccc----CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-------cc--
Confidence            34445454442    236789999999999876766653   358999999999999999999998732       22  


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                       .....+...+    ......||.|+...|.
T Consensus       170 -~~~~~d~~~~----~~~~~~fD~ILvDaPC  195 (313)
T d1ixka_         170 -ILFHSSSLHI----GELNVEFDKILLDAPC  195 (313)
T ss_dssp             -EEESSCGGGG----GGGCCCEEEEEEECCT
T ss_pred             -cccccccccc----ccccccccEEEEcccc
Confidence             2222222211    2235689999986653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.45  E-value=0.00013  Score=53.24  Aligned_cols=100  Identities=9%  Similarity=0.012  Sum_probs=65.5

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-----------------------------------------
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-----------------------------------------   96 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-----------------------------------------   96 (180)
                      ++..|+..+. ......+..++|--||+|.+.+.+|...                                         
T Consensus        35 aa~il~~al~-l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~  113 (249)
T d1o9ga_          35 ATEIFQRALA-RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE  113 (249)
T ss_dssp             HHHHHHHHHH-TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccc
Confidence            5556665553 2222345579999999999888665421                                         


Q ss_pred             -CeEEEecCCHHHHHHH---HHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274           97 -REVLLTDHNEEVLKIL---KKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL  166 (180)
Q Consensus        97 -~~V~~~D~~~~~l~~~---~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~  166 (180)
                       .++++.|.++.+++.+   ++|++..+.      ...+.+...++.+.......  ..+..+++||+||||=.
T Consensus       114 ~~~i~G~D~d~~ai~~A~~~r~n~~~Agl------~~~i~i~~~d~f~~~~~~~~--~~~~~~GlIVtNPPYGE  179 (249)
T d1o9ga_         114 QSERFGKPSYLEAAQAARRLRERLTAEGG------ALPCAIRTADVFDPRALSAV--LAGSAPDVVLTDLPYGE  179 (249)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHTTS------SCCEEEEECCTTCGGGHHHH--HTTCCCSEEEEECCGGG
T ss_pred             cCCccccccCHHHHHHHHHHHHHHHHcCC------CceeeeeecchhccCcchhc--cCCCCCCEEEeCCCccc
Confidence             1346778888888887   457777763      34567777777655433332  23567899999999865

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=0.00016  Score=50.23  Aligned_cols=76  Identities=16%  Similarity=0.056  Sum_probs=52.8

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274           72 VLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-  150 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (180)
                      ..++..++|..+|.|..+..+.+.+.+|+++|.++.+++.+++..           ..++...+..+.+   +...+.. 
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~-----------~~~~~~~~~~f~~---~~~~l~~~   81 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH-----------LPGLTVVQGNFRH---LKRHLAAL   81 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----------CTTEEEEESCGGG---HHHHHHHT
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-----------ccceeEeehHHHH---HHHHHHHc
Confidence            347889999999999777777666789999999999998887531           1234555544444   3333322 


Q ss_pred             CCCCCcEEEEc
Q 030274          151 YPGGFDLILGA  161 (180)
Q Consensus       151 ~~~~fD~Ii~~  161 (180)
                      ...++|.|+..
T Consensus        82 ~~~~vdgIl~D   92 (182)
T d1wg8a2          82 GVERVDGILAD   92 (182)
T ss_dssp             TCSCEEEEEEE
T ss_pred             CCCccCEEEEE
Confidence            34578988873

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.37  E-value=0.00016  Score=52.95  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=50.1

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..|.+.+.+... .++..|||-.||+|..++++.+.|.+.+++|++++..+.+++++...
T Consensus       194 ~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         194 AAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            566666655432 37889999999999999999999999999999999999999998765

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.36  E-value=0.00019  Score=52.12  Aligned_cols=82  Identities=16%  Similarity=0.101  Sum_probs=52.4

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ...+|||||||+|..++.+++.  ..+++..|..+ +++.++             ...++.....++...         .
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~-------------~~~r~~~~~~d~~~~---------~  137 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP-------------SYPGVEHVGGDMFVS---------I  137 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC-------------CCTTEEEEECCTTTC---------C
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc-------------cCCceEEeccccccc---------C
Confidence            3468999999999999998886  57999999954 432211             123566666666542         1


Q ss_pred             CCCCcEEEEccccccCCc---hhhHHHHHHh
Q 030274          152 PGGFDLILGADIYILYNR---SLLMTSFFQA  179 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y~~~~---~~l~~~~~~a  179 (180)
                      + ..|+++...+++....   ..+++.+.+|
T Consensus       138 P-~ad~~~l~~vlh~~~d~~~~~iL~~~~~a  167 (243)
T d1kyza2         138 P-KADAVFMKWICHDWSDEHCLKFLKNCYEA  167 (243)
T ss_dssp             C-CCSCEECSSSSTTSCHHHHHHHHHHHHHH
T ss_pred             C-CcceEEEEEEeecCCHHHHHHHHHHHHHh
Confidence            2 3566777777766433   3444444444

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00015  Score=53.99  Aligned_cols=79  Identities=19%  Similarity=0.332  Sum_probs=55.3

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||-||.|.|...-.+.+.  ..+|+.+|+++.+++.+++-+..+...   ....++.+..   ++.  .. ++...
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~---~~d~rv~i~~---~Da--~~-~l~~~  148 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG---YSSSKLTLHV---GDG--FE-FMKQN  148 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEE---SCH--HH-HHHTC
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccc---cCCCCceEEE---ccH--HH-HHhcC
Confidence            4579999999999988888875  469999999999999999887654211   0123444443   222  22 23345


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      ..+||+|+..
T Consensus       149 ~~~yDvIi~D  158 (285)
T d2o07a1         149 QDAFDVIITD  158 (285)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCCCEEEEc
Confidence            6789999975

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.34  E-value=0.00019  Score=53.22  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      +.++||-||+|.|.....+.+.. .+|+++|+++.+++.+++-+..
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~  117 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKI  117 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCT
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhh
Confidence            55799999999998887766654 6899999999999999976543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.31  E-value=9.5e-05  Score=55.25  Aligned_cols=80  Identities=14%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||-||.|.|...-.+.+. . .+|+++|+++++++.+++-+..+...   ....++.+..   ++  ....+....
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~---~~~~r~~i~~---~D--a~~~l~~~~  151 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG---YEDPRVNLVI---GD--GVAFLKNAA  151 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG---GGSTTEEEEE---SC--HHHHHHTSC
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcc---ccCCCcEEEE---cc--HHHHHhhcc
Confidence            4579999999999988888776 3 68999999999999999877554310   0122343332   22  222322223


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      .++||+||..
T Consensus       152 ~~~yDvIi~D  161 (290)
T d1xj5a_         152 EGSYDAVIVD  161 (290)
T ss_dssp             TTCEEEEEEC
T ss_pred             ccCccEEEEc
Confidence            4689999973

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.31  E-value=0.00012  Score=55.05  Aligned_cols=79  Identities=19%  Similarity=0.285  Sum_probs=54.9

Q ss_pred             CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..++||-||.|.|.+.-.+.+..  .+|+++|+++.+++.+++-+..+...   ....++.+.   .++.  .. ++...
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~---~~dprv~i~---i~Da--~~-~l~~~  176 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG---FSHPKLDLF---CGDG--FE-FLKNH  176 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG---GGCTTEEEE---CSCH--HH-HHHHC
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccc---cCCCCeEEE---EchH--HH-HHHhC
Confidence            45699999999999888887753  69999999999999999876554210   012233333   3332  22 23446


Q ss_pred             CCCCcEEEEc
Q 030274          152 PGGFDLILGA  161 (180)
Q Consensus       152 ~~~fD~Ii~~  161 (180)
                      ..+||+||..
T Consensus       177 ~~~yDvII~D  186 (312)
T d2b2ca1         177 KNEFDVIITD  186 (312)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCCCEEEEc
Confidence            7799999975

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.00039  Score=52.58  Aligned_cols=44  Identities=25%  Similarity=0.482  Sum_probs=37.6

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHH
Q 030274           74 QASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ++.+|||+|.|.|.++..+... + .+|+++|.++...+.+++...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            5678999999999999988765 3 589999999999999887643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.28  E-value=0.00033  Score=52.15  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=50.5

Q ss_pred             CeEEEeCCcCChHHHHHhhcCCeE-EEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274           76 SSILELGSGVGVTGILCSRFCREV-LLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG  154 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~~V-~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      .+||||.||.|.+++-+.+.|.++ .++|+++.+.+..+.|....             ...-+..+.+.      .....
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~-------------~~~~Di~~~~~------~~~~~   61 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAK-------------LIKGDISKISS------DEFPK   61 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCSE-------------EEESCTTTSCG------GGSCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCC-------------CccCChhhCCH------hHccc
Confidence            379999999999888887778654 59999999998888884311             23334333321      12347


Q ss_pred             CcEEEEccccc
Q 030274          155 FDLILGADIYI  165 (180)
Q Consensus       155 fD~Ii~~d~~y  165 (180)
                      .|++++.+|+-
T Consensus        62 ~dll~~g~PCq   72 (324)
T d1dcta_          62 CDGIIGGPPCQ   72 (324)
T ss_dssp             CSEEEECCCCT
T ss_pred             ccEEeeccccc
Confidence            99999998863

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.24  E-value=0.00014  Score=54.24  Aligned_cols=59  Identities=10%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..|.+.+.+... .++..|||..||+|..++++.+.|.+.+++|++++.++.+++++..+
T Consensus       237 ~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         237 AKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             THHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             hHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            355555554332 27789999999999999999999999999999999999998876554

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.18  E-value=0.00038  Score=52.20  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=52.1

Q ss_pred             CCCCeEEEeCCcCChHHHHHhhcCCe-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           73 LQASSILELGSGVGVTGILCSRFCRE-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~~~l~la~~~~~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ..+.+||||.||.|.+++.+.+.|.+ |.++|.++.+++..+.|....              ...|..+.+      ...
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------------~~~Di~~~~------~~~   68 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------------PEGDITQVN------EKT   68 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------------CBSCGGGSC------GGG
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------------CcCchhcCc------hhh
Confidence            36679999999999999988888875 466999999999999886321              111222111      112


Q ss_pred             CCCCcEEEEccccc
Q 030274          152 PGGFDLILGADIYI  165 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y  165 (180)
                      ...+|+|++.+|+-
T Consensus        69 ~~~~Dll~ggpPCq   82 (327)
T d2c7pa1          69 IPDHDILCAGFPCQ   82 (327)
T ss_dssp             SCCCSEEEEECCCT
T ss_pred             cceeeeeecccccc
Confidence            34799999999863

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0013  Score=45.44  Aligned_cols=89  Identities=6%  Similarity=0.074  Sum_probs=57.0

Q ss_pred             chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      .++..|.+-..+..-..++.+||||||+.|.++..+++.   ..+|+++|..+.           .       ...++..
T Consensus         5 RaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~-------~i~~~~~   66 (180)
T d1ej0a_           5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------D-------PIVGVDF   66 (180)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------C-------CCTTEEE
T ss_pred             HHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------c-------ccCCceE
Confidence            355666665554333347789999999999999988764   368999998651           0       1223556


Q ss_pred             EEeecCCCchhhHHH-hhCCCCCcEEEEccc
Q 030274          134 AKLEWGNSDQINKII-QKYPGGFDLILGADI  163 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~fD~Ii~~d~  163 (180)
                      ...+..+........ .....++|+|++.-.
T Consensus        67 ~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a   97 (180)
T d1ej0a_          67 LQGDFRDELVMKALLERVGDSKVQVVMSDMA   97 (180)
T ss_dssp             EESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             eecccccchhhhhhhhhccCcceeEEEeccc
Confidence            666666543222222 224568999988754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00072  Score=45.93  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=37.2

Q ss_pred             CCCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHHH
Q 030274           70 PDVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n  115 (180)
                      ....++.+||-+|+|. |++++.+++ .|++|+++|.+++-++.+++.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            3455889999999985 888887776 489999999999888877753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.79  E-value=0.0035  Score=42.77  Aligned_cols=45  Identities=20%  Similarity=0.333  Sum_probs=36.3

Q ss_pred             CCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           70 PDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      .+..++.+||=+|||. |+.++.+++. |+ +|+++|.++.-++.+++
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            4455788999999986 8888888875 54 79999999987777764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.77  E-value=0.0072  Score=41.63  Aligned_cols=83  Identities=12%  Similarity=0.111  Sum_probs=58.4

Q ss_pred             hCCCCCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274           68 KNPDVLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI  144 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  144 (180)
                      .....+++++||=.|++.|+   ++..+++.|++|+.++.+++-++.+.+.+..+.         ++.+...+..+.+..
T Consensus        16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~d~~~~~~~   86 (191)
T d1luaa1          16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---------KVNVTAAETADDASR   86 (191)
T ss_dssp             HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---------TCCCEEEECCSHHHH
T ss_pred             HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---------chhhhhhhcccHHHH
Confidence            33445689999999987663   444566779999999999988888887777653         223455666655444


Q ss_pred             hHHHhhCCCCCcEEEEccc
Q 030274          145 NKIIQKYPGGFDLILGADI  163 (180)
Q Consensus       145 ~~~~~~~~~~fD~Ii~~d~  163 (180)
                      ...    -+..|+++.+-.
T Consensus        87 ~~~----~~~iDilin~Ag  101 (191)
T d1luaa1          87 AEA----VKGAHFVFTAGA  101 (191)
T ss_dssp             HHH----TTTCSEEEECCC
T ss_pred             HHH----hcCcCeeeecCc
Confidence            433    357899988754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0038  Score=45.24  Aligned_cols=88  Identities=11%  Similarity=0.080  Sum_probs=63.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++.||=-|++.|+   ++..+++.|++|+.++.+++.++.+.+.++..+      ...++.....|..+.+....+..
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~------~~~~~~~~~~Dls~~~~v~~~v~   81 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG------YPGTLIPYRCDLSNEEDILSMFS   81 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CSSEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEEEccCCCHHHHHHHHH
Confidence            588999999998875   334455679999999999988888877777654      12356677888888776555432


Q ss_pred             ---hCCCCCcEEEEcccccc
Q 030274          150 ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y~  166 (180)
                         ...++.|++|.|--.+.
T Consensus        82 ~~~~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          82 AIRSQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHHHHCCCSEEEECCCCCC
T ss_pred             HHHHhcCCCCEEEecccccC
Confidence               22367999998875543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.68  E-value=0.0015  Score=44.45  Aligned_cols=74  Identities=26%  Similarity=0.344  Sum_probs=51.6

Q ss_pred             CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274           74 QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY  151 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      +..+|+=||+|. |+.++..|+ +|++|++.|.+++.++.++.-...+-             . ....+...+...    
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~-------------~-~~~~~~~~l~~~----   92 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRV-------------E-LLYSNSAEIETA----   92 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGS-------------E-EEECCHHHHHHH----
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccc-------------e-eehhhhhhHHHh----
Confidence            567999999998 888887776 59999999999998888776554431             1 112222223322    


Q ss_pred             CCCCcEEEEccccc
Q 030274          152 PGGFDLILGADIYI  165 (180)
Q Consensus       152 ~~~fD~Ii~~d~~y  165 (180)
                      -...|+||++=.+-
T Consensus        93 ~~~aDivI~aalip  106 (168)
T d1pjca1          93 VAEADLLIGAVLVP  106 (168)
T ss_dssp             HHTCSEEEECCCCT
T ss_pred             hccCcEEEEeeecC
Confidence            24689999987543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0083  Score=43.11  Aligned_cols=87  Identities=15%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ...|+.+|=-|++.|+   ++..+++.|++|+.+|.+++-++.+.+.+...+        .++.....|..+.+....+.
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--------~~~~~~~~Dvs~~~~v~~~~   75 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--------AKVHTFVVDCSNREDIYSSA   75 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEeeCCCHHHHHHHH
Confidence            3578899999998875   455667779999999999999988888887654        35677788888887665544


Q ss_pred             h---hCCCCCcEEEEcccccc
Q 030274          149 Q---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~y~  166 (180)
                      .   ...+..|+++.|--+..
T Consensus        76 ~~i~~~~g~idilinnag~~~   96 (244)
T d1yb1a_          76 KKVKAEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHHHHHTCCCSEEEECCCCCC
T ss_pred             HHHHHHcCCCceeEeeccccc
Confidence            3   23567999988876543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.64  E-value=0.0023  Score=43.82  Aligned_cols=49  Identities=18%  Similarity=0.428  Sum_probs=38.4

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.+..+..++.+||=+|||. |+..+.+++. |+ +|+++|.+++-++.+++
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            34444555789999999986 8877777774 65 89999999998888865

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.57  E-value=0.0062  Score=44.13  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+...+...+      ...++.....|..+.+....+..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~------~~~~~~~~~~Dvt~~~~v~~~~~   75 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA------PDAEVLTTVADVSDEAQVEAYVT   75 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC------TTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC------CCCeEEEEeccCCCHHHHHHHHH
Confidence            478899999998874   455677789999999999988888777766553      12356677888888776655433


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|++|.|--
T Consensus        76 ~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          76 ATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHHHSCCSEEEECCC
T ss_pred             HHHHHhCCCCEEEECCc
Confidence            2   2368999998753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.56  E-value=0.0055  Score=44.43  Aligned_cols=83  Identities=13%  Similarity=0.163  Sum_probs=61.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.++..+        .++.....|..+.+....+..
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--------~~~~~~~~Dv~~~~~v~~~~~   74 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--------VEARSYVCDVTSEEAVIGTVD   74 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--------SCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            478999999988774   445566779999999999998888887776654        346677788887765554432


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|++|.+--
T Consensus        75 ~~~~~~g~iDilVnnaG   91 (260)
T d1zema1          75 SVVRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHhCCCCeehhhhc
Confidence            2   2368999997653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.55  E-value=0.0093  Score=40.38  Aligned_cols=81  Identities=21%  Similarity=0.316  Sum_probs=52.0

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD  142 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~  142 (180)
                      +.+..+..++.+||=+|||. |+.++.+++. |. .|+.+|.++.-++.+++.    +.           ...++....+
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga-----------~~~i~~~~~~   84 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA-----------THVINSKTQD   84 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC-----------SEEEETTTSC
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC-----------eEEEeCCCcC
Confidence            34444556888999999986 7777777764 54 678899999888887753    20           1223444444


Q ss_pred             hhhHHHhhCCCCCcEEEEc
Q 030274          143 QINKIIQKYPGGFDLILGA  161 (180)
Q Consensus       143 ~~~~~~~~~~~~fD~Ii~~  161 (180)
                      ..+...+..++.+|+|+-+
T Consensus        85 ~~~~i~~~t~gg~D~vid~  103 (174)
T d1f8fa2          85 PVAAIKEITDGGVNFALES  103 (174)
T ss_dssp             HHHHHHHHTTSCEEEEEEC
T ss_pred             HHHHHHHHcCCCCcEEEEc
Confidence            3444434455688988754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.54  E-value=0.0022  Score=43.15  Aligned_cols=44  Identities=18%  Similarity=0.207  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      +..++.+||=+|||. |+.++.+++. |.+|+++|.++.-++.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence            345788999999986 8888877774 7899999999988877764

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.49  E-value=0.001  Score=47.86  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             CceecchHHHHH--HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc------CCeEEEecCCHHHHHHHHHHHHHhcCCC
Q 030274           52 GQLVWPGAMLMN--DYLSKNPDVLQASSILELGSGVGVTGILCSRF------CREVLLTDHNEEVLKILKKNIEHHTSSE  123 (180)
Q Consensus        52 g~~~w~~~~~l~--~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~------~~~V~~~D~~~~~l~~~~~n~~~n~~~~  123 (180)
                      |..+|....-++  .-|...   .+.++|||+|++.|..++.++..      ..+|+++|+++.......     .    
T Consensus        59 G~p~~k~p~d~~~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~----  126 (232)
T d2bm8a1          59 GLRMLKDPDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----S----  126 (232)
T ss_dssp             TEECCSCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----G----
T ss_pred             ceecccCHHHHHHHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----c----
Confidence            445554443333  323332   25679999999999877766642      369999999764222111     1    


Q ss_pred             CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcc
Q 030274          124 NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGAD  162 (180)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d  162 (180)
                         ...++.+...+..+.+.+..+   ....+|+|+..+
T Consensus       127 ---~~~~I~~i~gDs~~~~~~~~l---~~~~~dlIfID~  159 (232)
T d2bm8a1         127 ---DMENITLHQGDCSDLTTFEHL---REMAHPLIFIDN  159 (232)
T ss_dssp             ---GCTTEEEEECCSSCSGGGGGG---SSSCSSEEEEES
T ss_pred             ---cccceeeeecccccHHHHHHH---HhcCCCEEEEcC
Confidence               123566666665554433322   234678777654

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.001  Score=49.77  Aligned_cols=75  Identities=24%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             CeEEEeCCcCChHHHHHhhcCC--e-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           76 SSILELGSGVGVTGILCSRFCR--E-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la~~~~--~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .+|+||.||.|.+++.+.+.|.  + |.++|+++.+++..+.|.....            +..-+..+.. ...+   ..
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~------------~~~~di~~~~-~~~~---~~   66 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQ------------LLAKTIEGIT-LEEF---DR   66 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSC------------EECSCGGGCC-HHHH---HH
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCC------------cccCchhhCC-HhHc---CC
Confidence            5899999999988877766663  3 6799999999998888743211            2211222111 1111   12


Q ss_pred             CCCcEEEEcccccc
Q 030274          153 GGFDLILGADIYIL  166 (180)
Q Consensus       153 ~~fD~Ii~~d~~y~  166 (180)
                      ..+|++++.+|+-.
T Consensus        67 ~~~Dll~ggpPCq~   80 (343)
T d1g55a_          67 LSFDMILMSPPCQP   80 (343)
T ss_dssp             HCCSEEEECCC---
T ss_pred             CCccEEEeeccccc
Confidence            36899999998633

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.45  E-value=0.008  Score=43.29  Aligned_cols=86  Identities=10%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++.+|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.++..+        .++.....|..+.+....+..
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--------~~~~~~~~Dvt~~~~v~~~~~   79 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--------YESSGYAGDVSKKEEISEVIN   79 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            478899999987773   344455668999999999998888887776654        346677888888776655433


Q ss_pred             ---hCCCCCcEEEEcccccc
Q 030274          150 ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y~  166 (180)
                         ...++.|++|.|-.+..
T Consensus        80 ~~~~~~g~iDilvnnag~~~   99 (251)
T d2c07a1          80 KILTEHKNVDILVNNAGITR   99 (251)
T ss_dssp             HHHHHCSCCCEEEECCCCCC
T ss_pred             HHHHhcCCceeeeecccccc
Confidence               23468999998876544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.44  E-value=0.014  Score=42.19  Aligned_cols=86  Identities=12%  Similarity=0.168  Sum_probs=62.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH-
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII-  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (180)
                      .++++||=.|+..|+   ++..+++.|++|+.++.+++-++.+.+.+...+        .++.....|..+.+....+. 
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------~~~~~~~~D~s~~~~~~~~~~   75 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------LNVEGSVCDLLSRTERDKLMQ   75 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CCceEEEeecCCHHHHHHHHH
Confidence            378999999998764   444566679999999999988888877777664        34566778888877655443 


Q ss_pred             ---hhCCCCCcEEEEcccccc
Q 030274          149 ---QKYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 ---~~~~~~fD~Ii~~d~~y~  166 (180)
                         ....+..|+++.+--+..
T Consensus        76 ~~~~~~~g~idilinnag~~~   96 (258)
T d1ae1a_          76 TVAHVFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HHHHHTTSCCCEEEECCCCCC
T ss_pred             HHHHHhCCCcEEEeccccccc
Confidence               234567899887665433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.40  E-value=0.0038  Score=42.54  Aligned_cols=49  Identities=12%  Similarity=0.170  Sum_probs=39.0

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKK  114 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~  114 (180)
                      +.+..+..++.+||=+|||. |+.++.+++. | .+|+++|.+++-++.+++
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            34445566889999999986 7888877764 5 589999999998888875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.39  E-value=0.0029  Score=42.71  Aligned_cols=44  Identities=23%  Similarity=0.396  Sum_probs=35.9

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      ...++.+||=+|||. |++++.+++. |++|+++|.+++-++.+++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            345788999999985 8877777764 7899999999998888776

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.29  E-value=0.0063  Score=44.23  Aligned_cols=83  Identities=17%  Similarity=0.290  Sum_probs=58.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...         ..+.....|..+.+....+..
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---------~~~~~~~~Dv~~~~~v~~~~~   74 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---------DVISFVHCDVTKDEDVRNLVD   74 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---------TTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---------CceEEEEccCCCHHHHHHHHH
Confidence            588999999998874   33445567999999999998777776665433         245667778887766555432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|++|.+--+
T Consensus        75 ~~~~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          75 TTIAKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCcceecccccc
Confidence               223589999977644

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.28  E-value=0.019  Score=41.43  Aligned_cols=85  Identities=9%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...+        .++.....|..+.+....+..
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--------~~~~~~~~Dv~~~~~v~~~~~   77 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--------FKVEASVCDLSSRSERQELMN   77 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CCceEEEeeCCCHHHHHHHHH
Confidence            478999999998774   444566679999999999988888877776654        345566777777665554432


Q ss_pred             ----hCCCCCcEEEEccccc
Q 030274          150 ----KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ----~~~~~fD~Ii~~d~~y  165 (180)
                          ...++.|+++.|--+.
T Consensus        78 ~~~~~~~~~idilvnnAG~~   97 (259)
T d2ae2a_          78 TVANHFHGKLNILVNNAGIV   97 (259)
T ss_dssp             HHHHHTTTCCCEEEECCCCC
T ss_pred             HHHHHhCCCceEEEECCcee
Confidence                2345799999886543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0086  Score=43.26  Aligned_cols=86  Identities=13%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.++..+        .++.....|..+.+....+..
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--------~~~~~~~~Dvs~~~~~~~~~~   80 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--------GQAFACRCDITSEQELSALAD   80 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--------CcEEEEEccCCCHHHHHHHHH
Confidence            478999999987764   344566679999999999988888887777654        346667788887765554432


Q ss_pred             ---hCCCCCcEEEEcccccc
Q 030274          150 ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y~  166 (180)
                         ...++.|+++.|--+..
T Consensus        81 ~~~~~~g~iDilvnnAG~~~  100 (255)
T d1fmca_          81 FAISKLGKVDILVNNAGGGG  100 (255)
T ss_dssp             HHHHHHSSCCEEEECCCCCC
T ss_pred             HHHHHcCCCCEeeeCCcCCC
Confidence               22358999998865443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.24  E-value=0.0081  Score=43.84  Aligned_cols=86  Identities=17%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...+..     ..++.....|..+.+....+..
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~   76 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP-----AEKINAVVADVTEASGQDDIIN   76 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC-----GGGEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcceEEEEeeCCCHHHHHHHHH
Confidence            478899999998874   44456667999999999999888888888776411     2356778888888776555433


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|+++.|--
T Consensus        77 ~~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          77 TTLAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHcCCceEEEeecc
Confidence            2   2358999998754

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.23  E-value=0.011  Score=42.45  Aligned_cols=85  Identities=14%  Similarity=0.160  Sum_probs=59.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+....       ..++.....|..+.+....+..
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-------g~~~~~~~~Dv~~~~~v~~~~~   75 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-------GVETMAFRCDVSNYEEVKKLLE   75 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------CCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-------CCcEEEEEccCCCHHHHHHHHH
Confidence            478899999998774   445566779999999999887776665554332       1345567788887766555433


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.|--+
T Consensus        76 ~~~~~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          76 AVKEKFGKLDTVVNAAGI   93 (251)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            2   23589999987644

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.22  E-value=0.0082  Score=43.73  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=62.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...+.     ...++.....|..+.+....+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~-----~~~~~~~~~~Dvs~~~~v~~~~~   77 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV-----SEKQVNSVVADVTTEDGQDQIIN   77 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-----CGGGEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCCceEEEEccCCCHHHHHHHHH
Confidence            578999999988774   4445666799999999999988888887776541     12356778888888776555433


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|+++.|--
T Consensus        78 ~~~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          78 STLKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHhCCceEEEeCCc
Confidence            2   2358999998743

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.21  E-value=0.0056  Score=42.51  Aligned_cols=46  Identities=24%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             CCCCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHHH
Q 030274           70 PDVLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n  115 (180)
                      .+..++.+||-+|||. |+.++.+++. + .+|+++|.++.-++.+++.
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            4556889999999987 7777777764 4 5899999999988888754

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.14  E-value=0.014  Score=42.11  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++-++.+.+.+...+        .++.....|..+.+....+..
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~   77 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--------FQVTGSVCDASLRPEREKLMQ   77 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CceEEEeccCCCHHHHHHHHH
Confidence            378999999998875   445566779999999999988888877776654        346677777777665544432


Q ss_pred             ----hCCCCCcEEEEcccccc
Q 030274          150 ----KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ----~~~~~fD~Ii~~d~~y~  166 (180)
                          ...++.|+++.|--+..
T Consensus        78 ~~~~~~~g~idilvnnAG~~~   98 (259)
T d1xq1a_          78 TVSSMFGGKLDILINNLGAIR   98 (259)
T ss_dssp             HHHHHHTTCCSEEEEECCC--
T ss_pred             HHHHHhCCCcccccccccccC
Confidence                23468999998865433

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0094  Score=42.73  Aligned_cols=80  Identities=18%  Similarity=0.274  Sum_probs=56.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++|+++|=-|++.|+   ++..+++.|++|+.+|.+++-++.+.+.+.            ++.....|..+.+..+....
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~------------~~~~~~~Dv~d~~~v~~~~~   72 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------------GIEPVCVDLGDWEATERALG   72 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------------TCEEEECCTTCHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC------------CCeEEEEeCCCHHHHHHHHH
Confidence            478999999998774   444556679999999999877665544321            24466778887776666654


Q ss_pred             hCCCCCcEEEEccccc
Q 030274          150 KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y  165 (180)
                      . -++.|++|.|--+.
T Consensus        73 ~-~g~iDilVnnAg~~   87 (244)
T d1pr9a_          73 S-VGPVDLLVNNAAVA   87 (244)
T ss_dssp             T-CCCCCEEEECCCCC
T ss_pred             H-hCCceEEEeccccc
Confidence            3 36899999876543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.02  E-value=0.012  Score=42.56  Aligned_cols=86  Identities=17%  Similarity=0.231  Sum_probs=62.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++.+|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...+.     ...++.....|..+.+....+..
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~-----~~~~~~~~~~Dvt~~~~v~~~~~   77 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV-----SEQNVNSVVADVTTDAGQDEILS   77 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----CGGGEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcCceEEEEccCCCHHHHHHHHH
Confidence            478899999998774   4445666799999999999988888888776541     12357777888888776655433


Q ss_pred             h---CCCCCcEEEEccc
Q 030274          150 K---YPGGFDLILGADI  163 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~  163 (180)
                      .   ..++.|++|.|--
T Consensus        78 ~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          78 TTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHhCCCCEeecccc
Confidence            2   2368999988753

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.011  Score=42.25  Aligned_cols=79  Identities=20%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+.            ++.....|..+.+..+....
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~------------~~~~~~~Dv~~~~~v~~~~~   70 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP------------GIEPVCVDLGDWDATEKALG   70 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------------TCEEEECCTTCHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC------------CCeEEEEeCCCHHHHHHHHH
Confidence            478999999988774   444566679999999999876655544321            24466778887776666554


Q ss_pred             hCCCCCcEEEEcccc
Q 030274          150 KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~  164 (180)
                      . -++.|++|.|--+
T Consensus        71 ~-~g~iDilVnnAg~   84 (242)
T d1cyda_          71 G-IGPVDLLVNNAAL   84 (242)
T ss_dssp             T-CCCCSEEEECCCC
T ss_pred             H-cCCCeEEEECCcc
Confidence            3 3689999977543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0063  Score=42.14  Aligned_cols=44  Identities=27%  Similarity=0.436  Sum_probs=36.2

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ++|-=||+|+ | .++..+++.|.+|+..|.+++.++.++++++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~   50 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES   50 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence            4788899987 5 466777888999999999999999888776643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.90  E-value=0.0089  Score=43.04  Aligned_cols=85  Identities=13%  Similarity=0.163  Sum_probs=60.3

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...         .++.....|..+.+....+..
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~   74 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---------DQIQFFQHDSSDEDGWTKLFD   74 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---------TTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---------CcEEEEEccCCCHHHHHHHHH
Confidence            578999999987764   44456667999999999998887777665322         256677888888766555433


Q ss_pred             ---hCCCCCcEEEEcccccc
Q 030274          150 ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y~  166 (180)
                         ...++.|++|.|--+..
T Consensus        75 ~~~~~~G~iDiLVnnAg~~~   94 (251)
T d1zk4a1          75 ATEKAFGPVSTLVNNAGIAV   94 (251)
T ss_dssp             HHHHHHSSCCEEEECCCCCC
T ss_pred             HHHHHhCCceEEEecccccc
Confidence               22368999988765443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.90  E-value=0.026  Score=40.53  Aligned_cols=81  Identities=14%  Similarity=0.147  Sum_probs=58.5

Q ss_pred             CCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh--
Q 030274           75 ASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ--  149 (180)
Q Consensus        75 ~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (180)
                      ++.+|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.++..+        .++.....|..+.+....+..  
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--------~~~~~~~~Dvs~~~~v~~~~~~~   73 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--------VEADGRTCDVRSVPEIEALVAAV   73 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEeecCCHHHHHHHHHHH
Confidence            4566778887664   444566679999999999998888888777654        346677888888776655543  


Q ss_pred             -hCCCCCcEEEEccc
Q 030274          150 -KYPGGFDLILGADI  163 (180)
Q Consensus       150 -~~~~~fD~Ii~~d~  163 (180)
                       ...++.|++|.|--
T Consensus        74 ~~~~g~iDilVnnAG   88 (257)
T d2rhca1          74 VERYGPVDVLVNNAG   88 (257)
T ss_dssp             HHHTCSCSEEEECCC
T ss_pred             HHHhCCCCEEEeccc
Confidence             23468999997753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.89  E-value=0.0095  Score=39.76  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=34.9

Q ss_pred             CCCCCeEEEeCCcC-ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           72 VLQASSILELGSGV-GVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        72 ~~~~~~vLdlG~G~-G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      ..++.+||=.|||. |+..+.+++. |++|+++|.++.-++.+++
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            45788999999987 7777777764 7899999999987777765

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.032  Score=41.06  Aligned_cols=91  Identities=13%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             CCCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           71 DVLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ..++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+..+...   ....++.....|..+.+....+
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~---~~~~~~~~~~~Dvs~~~~v~~~   84 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP---TKQARVIPIQCNIRNEEEVNNL   84 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT---TCCCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc---ccCceEEEEeccCCCHHHHHHH
Confidence            44689999999988874   33455667999999999998888777766654211   1234567778888887766554


Q ss_pred             Hhh---CCCCCcEEEEcccc
Q 030274          148 IQK---YPGGFDLILGADIY  164 (180)
Q Consensus       148 ~~~---~~~~fD~Ii~~d~~  164 (180)
                      ...   ..++.|++|.|--.
T Consensus        85 ~~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          85 VKSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHhCCeEEEEeeccc
Confidence            332   23579999987644

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.86  E-value=0.0089  Score=45.53  Aligned_cols=58  Identities=19%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhc---------CCeEEEecCCHHHHHHHHHHHH
Q 030274           60 MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRF---------CREVLLTDHNEEVLKILKKNIE  117 (180)
Q Consensus        60 ~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~---------~~~V~~~D~~~~~l~~~~~n~~  117 (180)
                      ..++.|+.+.   ....+..+|+|+|+|.|.++.-+.+.         ..+++.+|.|+.+.+.-++++.
T Consensus        62 ~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          62 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            4455555432   22224458999999999877644321         2468999999876555555433

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.82  E-value=0.0084  Score=40.83  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=39.6

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n  115 (180)
                      +.+..+..++.+|+=+|||. |+.++.+++. | .+|+++|.+++-++.+++-
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            34444456888999999986 7888877774 5 6999999999988888865

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.023  Score=40.62  Aligned_cols=81  Identities=12%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+..+           ......|..+.+....+..
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~-----------~~~~~~Dv~~~~~v~~~~~   70 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGAN-----------GKGLMLNVTDPASIESVLE   70 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-----------EEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCC-----------CcEEEEEecCHHHhhhhhh
Confidence            478899999988774   34455667999999999998877776655333           4456777777665544432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|++|.|--.
T Consensus        71 ~~~~~~g~iDilVnnAg~   88 (243)
T d1q7ba_          71 KIRAEFGEVDILVNNAGI   88 (243)
T ss_dssp             HHHHHTCSCSEEEECCCC
T ss_pred             hhhcccCCcceehhhhhh
Confidence               234689999977543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.77  E-value=0.009  Score=43.06  Aligned_cols=52  Identities=23%  Similarity=0.319  Sum_probs=39.5

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecC
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDH  104 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~  104 (180)
                      |..+-.++..|.+...+. ...++.+|+|||||.|.++..++...  ..|.++++
T Consensus        45 ~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          45 HHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             CCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            445667888887765554 44566799999999999999988763  57888877

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.74  E-value=0.0095  Score=40.49  Aligned_cols=49  Identities=20%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK  114 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~  114 (180)
                      +.+.....++.+||=+|||. |+.++.+++. |+ +|+++|.+++-++.+++
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            34445566888999999987 9999988885 54 79999999987777765

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.71  E-value=0.033  Score=39.90  Aligned_cols=79  Identities=23%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             eEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---h
Q 030274           77 SILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ---K  150 (180)
Q Consensus        77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  150 (180)
                      .+|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+...+        .++.....|..+.+....+..   .
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--------~~~~~~~~Dv~~~~~v~~~~~~~~~   74 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--------GHAVAVKVDVSDRDQVFAAVEQARK   74 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            35777877664   444566679999999999998888887777654        346667788887776555433   2


Q ss_pred             CCCCCcEEEEccc
Q 030274          151 YPGGFDLILGADI  163 (180)
Q Consensus       151 ~~~~fD~Ii~~d~  163 (180)
                      ..++.|++|.|--
T Consensus        75 ~~g~iDilVnnAG   87 (255)
T d1gega_          75 TLGGFDVIVNNAG   87 (255)
T ss_dssp             HTTCCCEEEECCC
T ss_pred             HhCCccEEEeccc
Confidence            2468999997753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.70  E-value=0.038  Score=40.27  Aligned_cols=86  Identities=16%  Similarity=0.275  Sum_probs=58.4

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.+...++.+.+.+....       ..++.....|..+.+......
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-------g~~~~~~~~D~~~~~~v~~~~   94 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-------GNKVHAIQCDVRDPDMVQNTV   94 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------SSCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-------CCceEEEEecccChHHHHHHh
Confidence            4688999999987763   444555679999999999987776666554332       124556677777766544332


Q ss_pred             ---hhCCCCCcEEEEcccc
Q 030274          149 ---QKYPGGFDLILGADIY  164 (180)
Q Consensus       149 ---~~~~~~fD~Ii~~d~~  164 (180)
                         ....++.|+++.+--.
T Consensus        95 ~~~~~~~g~iDilvnnAg~  113 (294)
T d1w6ua_          95 SELIKVAGHPNIVINNAAG  113 (294)
T ss_dssp             HHHHHHTCSCSEEEECCCC
T ss_pred             hhhhhhccccchhhhhhhh
Confidence               2335689999887643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.017  Score=41.51  Aligned_cols=87  Identities=15%  Similarity=0.092  Sum_probs=60.3

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      .|+++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+...+....      ...++.....|..+.+....+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~   75 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF------EPQKTLFIQCDVADQQQLRDTFRK   75 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS------CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc------CCCcEEEEEeecCCHHHHHHHHHH
Confidence            57889999987764   344556679999999999988777766654431      123566778888887665554332


Q ss_pred             ---CCCCCcEEEEcccccc
Q 030274          151 ---YPGGFDLILGADIYIL  166 (180)
Q Consensus       151 ---~~~~fD~Ii~~d~~y~  166 (180)
                         ..++.|++|.|--+..
T Consensus        76 ~~~~~G~iDilVnnAg~~~   94 (254)
T d2gdza1          76 VVDHFGRLDILVNNAGVNN   94 (254)
T ss_dssp             HHHHHSCCCEEEECCCCCC
T ss_pred             HHHHcCCcCeecccccccc
Confidence               2358999998876544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.69  E-value=0.016  Score=38.90  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=37.2

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n  115 (180)
                      +.+..+..++.+||=.|||. |..++.+++. | ..|+++|.+++-++.+++.
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            44445566889999999974 6667766664 5 6899999999888777753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.011  Score=39.78  Aligned_cols=45  Identities=18%  Similarity=0.113  Sum_probs=35.7

Q ss_pred             CCCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           70 PDVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        70 ~~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      .+..++.+||=+|||. |+.++.+++ .|++++++|.+++-++.+++
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence            4455888999999986 888887777 47899999998887776664

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.65  E-value=0.018  Score=41.22  Aligned_cols=83  Identities=14%  Similarity=0.133  Sum_probs=58.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+.+..           ++.....|..+.+....+..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~   72 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------AARYVHLDVTQPAQWKAAVD   72 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------GEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC-----------cceEEEeecCCHHHHHHHHH
Confidence            578899999998774   4445666799999999999877766655432           35567778887766555433


Q ss_pred             h---CCCCCcEEEEcccccc
Q 030274          150 K---YPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y~  166 (180)
                      .   ..++.|+++.|--+..
T Consensus        73 ~~~~~~g~idilinnAG~~~   92 (244)
T d1nffa_          73 TAVTAFGGLHVLVNNAGILN   92 (244)
T ss_dssp             HHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHhCCCeEEEECCcccC
Confidence            2   2357999998875443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.63  E-value=0.019  Score=41.33  Aligned_cols=86  Identities=8%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC-HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN-EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      .+++++|=-|++.|+   ++..+++.|++|+.++.+ +..++.+.+.+....       ..++.....|..+.+....+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~   74 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-------GVKVLYDGADLSKGEAVRGLV   74 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-------TSCEEEECCCTTSHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-------CCcEEEEECCCCCHHHHHHHH
Confidence            368889988888774   444566779999999986 566777766665432       234666778888877665544


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|++|.|--+.
T Consensus        75 ~~~~~~~G~iDiLVnnAG~~   94 (260)
T d1x1ta1          75 DNAVRQMGRIDILVNNAGIQ   94 (260)
T ss_dssp             HHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHhCCCcEEEeecccc
Confidence            32   236899999876443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.61  E-value=0.013  Score=42.34  Aligned_cols=86  Identities=12%  Similarity=0.081  Sum_probs=58.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+....       ..++.....|..+.+....+..
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~   79 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-------GVKTKAYQCDVSNTDIVTKTIQ   79 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-------TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-------CCceEEEEccCCCHHHHHHHHH
Confidence            478899999987764   444566679999999998866655554443321       1346677888888776655432


Q ss_pred             ---hCCCCCcEEEEccccc
Q 030274          150 ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y  165 (180)
                         ...++.|++|.|--+.
T Consensus        80 ~~~~~~g~iDilVnnAg~~   98 (260)
T d1h5qa_          80 QIDADLGPISGLIANAGVS   98 (260)
T ss_dssp             HHHHHSCSEEEEEECCCCC
T ss_pred             HHHHHhCCCcEeccccccc
Confidence               2346899998876543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.01  Score=39.95  Aligned_cols=45  Identities=24%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHHH
Q 030274           71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n  115 (180)
                      +..++.+||=+|||. |+.++.+++. |+ +|+++|.++.-++.+++.
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            344778999999987 7777777764 65 899999999988877653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.49  E-value=0.02  Score=41.26  Aligned_cols=83  Identities=12%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+.           .++.....|..+.+....+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~   71 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----------DAARYQHLDVTIEEDWQRVVA   71 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----------GGEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------CceEEEEcccCCHHHHHHHHH
Confidence            578999999998874   444566679999999999876655443321           246677888888776655443


Q ss_pred             h---CCCCCcEEEEcccccc
Q 030274          150 K---YPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y~  166 (180)
                      .   ..++.|++|.|--+..
T Consensus        72 ~~~~~~g~iDilVnnAg~~~   91 (254)
T d1hdca_          72 YAREEFGSVDGLVNNAGIST   91 (254)
T ss_dssp             HHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHcCCccEEEecCcccc
Confidence            2   2358999887764433

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.017  Score=41.56  Aligned_cols=80  Identities=14%  Similarity=0.221  Sum_probs=56.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+.            +......|..+.+....+..
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~------------~~~~~~~Dvs~~~~v~~~~~   71 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP------------GAVFILCDVTQEDDVKTLVS   71 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------------TEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC------------CCeEEEccCCCHHHHHHHHH
Confidence            578999999998774   444566679999999999887776654321            24567778877766555433


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.|--+
T Consensus        72 ~~~~~~g~iDilVnnAG~   89 (250)
T d1ydea1          72 ETIRRFGRLDCVVNNAGH   89 (250)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEecccc
Confidence            2   23579999988643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.26  E-value=0.022  Score=38.32  Aligned_cols=50  Identities=22%  Similarity=0.231  Sum_probs=36.7

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhh-cC-CeEEEecCCHHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSR-FC-REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~-~~-~~V~~~D~~~~~l~~~~~n  115 (180)
                      +.+..+..++.+||=+|+|. |..++.+++ .+ .+|+++|.+++-.+.+++.
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            34445566889999999975 555555554 34 6999999999888877664

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.06  E-value=0.043  Score=39.53  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=59.3

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH-HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE-EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.++.+. ..++.+.+.++..+        .++.....|..+.+....+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--------~~~~~~~~Dvt~~~~v~~~~   76 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--------GEAIAVKGDVTVESDVINLV   76 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CEEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHH
Confidence            578899999998874   3445666799999999874 46676766666654        34666778888776655543


Q ss_pred             hh---CCCCCcEEEEccccc
Q 030274          149 QK---YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~---~~~~fD~Ii~~d~~y  165 (180)
                      ..   ..++.|++|.|--+.
T Consensus        77 ~~~~~~~G~iDiLVnnAG~~   96 (261)
T d1geea_          77 QSAIKEFGKLDVMINNAGLE   96 (261)
T ss_dssp             HHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHhCCCCEeeccceec
Confidence            32   235899999886543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.06  E-value=0.023  Score=40.88  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+   +        .++.....|..+.+....+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--------~~~~~~~~Dvt~~~~v~~~~~   71 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G--------PAACAIALDVTDQASIDRCVA   71 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--------TTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--------CceEEEEeeCCCHHHHHHHHH
Confidence            478899999988774   44456667999999999987766655443   2        235567788887776655433


Q ss_pred             h---CCCCCcEEEEcccccc
Q 030274          150 K---YPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~y~  166 (180)
                      .   ..++.|++|.|--++.
T Consensus        72 ~~~~~~g~iDilVnnAg~~~   91 (256)
T d1k2wa_          72 ELLDRWGSIDILVNNAALFD   91 (256)
T ss_dssp             HHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHhCCccEEEeeccccc
Confidence            2   2368999998876544

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.00  E-value=0.05  Score=39.26  Aligned_cols=85  Identities=20%  Similarity=0.280  Sum_probs=60.3

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC-HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN-EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+ ++.++.+.+.++.++        .++.....|..+.+....+.
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~D~~~~~~v~~~~   87 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--------SDAACVKANVGVVEDIVRMF   87 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--------CceeeEeCCCCCHHHHHHHH
Confidence            578999999998874   555666779999999976 466777776666664        34667778888776555543


Q ss_pred             h---hCCCCCcEEEEccccc
Q 030274          149 Q---KYPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~y  165 (180)
                      .   ...++.|+++.+--..
T Consensus        88 ~~~~~~~g~idilV~nag~~  107 (272)
T d1g0oa_          88 EEAVKIFGKLDIVCSNSGVV  107 (272)
T ss_dssp             HHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHhCCCCccccccccc
Confidence            3   2235789998887543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.94  E-value=0.036  Score=42.58  Aligned_cols=47  Identities=13%  Similarity=0.205  Sum_probs=40.2

Q ss_pred             CCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274           74 QASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHT  120 (180)
Q Consensus        74 ~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~  120 (180)
                      ++..++|+||-.|..+..+++.    +.+|++.|.++...+.+++|++.|.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            5679999999999888766542    3699999999999999999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.92  E-value=0.016  Score=39.74  Aligned_cols=43  Identities=19%  Similarity=0.208  Sum_probs=33.8

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      ++|-=||+|+ | .++..++..|.+|+..|.+++.++.+..++..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~   49 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAK   49 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhh
Confidence            4688899987 5 34556777899999999999988887766554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.91  E-value=0.029  Score=40.26  Aligned_cols=83  Identities=17%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+..           +......|..+.+....+..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~~~~~~~   72 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE-----------RSMFVRHDVSSEADWTLVMA   72 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT-----------TEEEECCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------CeEEEEeecCCHHHHHHHHH
Confidence            578899999987763   3445566799999999999877766654422           24455666666655444432


Q ss_pred             ---hCCCCCcEEEEcccccc
Q 030274          150 ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y~  166 (180)
                         ...++.|+++.|--+..
T Consensus        73 ~~~~~~g~iDilVnnAG~~~   92 (253)
T d1hxha_          73 AVQRRLGTLNVLVNNAGILL   92 (253)
T ss_dssp             HHHHHHCSCCEEEECCCCCC
T ss_pred             HHHHHhCCCCeEEecccccC
Confidence               22368999998876543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.058  Score=38.83  Aligned_cols=87  Identities=16%  Similarity=0.219  Sum_probs=56.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH-
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII-  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (180)
                      ++|+++|=-|++.|+   ++..+++.|++|++++.+++.++.+...+....       ...+.....+........... 
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~   84 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-------AASAHYIAGTMEDMTFAEQFVA   84 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-------CSEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-------cccchhhhhhhhhHHHHHHHHH
Confidence            588999999998884   444566679999999999998888876655443       123444444444443322221 


Q ss_pred             --hhCCCCCcEEEEcccccc
Q 030274          149 --QKYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 --~~~~~~fD~Ii~~d~~y~  166 (180)
                        ....+..|+++.+-..+.
T Consensus        85 ~~~~~~g~~~~li~nag~~~  104 (269)
T d1xu9a_          85 QAGKLMGGLDMLILNHITNT  104 (269)
T ss_dssp             HHHHHHTSCSEEEECCCCCC
T ss_pred             HHHHHhCCcccccccccccc
Confidence              123457899888776544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.028  Score=37.76  Aligned_cols=80  Identities=25%  Similarity=0.282  Sum_probs=50.6

Q ss_pred             hhCCCCCCCCeEEEeCC-c-CChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           67 SKNPDVLQASSILELGS-G-VGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        67 ~~~~~~~~~~~vLdlG~-G-~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .+..+..++.+||=.|+ | .|..++.+|+. |++|++++.+++-.+.+++    .+.           ...++..+.+-
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga-----------~~vi~~~~~~~   85 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA-----------HEVFNHREVNY   85 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC-----------SEEEETTSTTH
T ss_pred             HHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCc-----------ccccccccccH
Confidence            34445558889999996 4 47888877774 8899999988876666654    331           12234444332


Q ss_pred             hhHHHhh-CCCCCcEEEEc
Q 030274          144 INKIIQK-YPGGFDLILGA  161 (180)
Q Consensus       144 ~~~~~~~-~~~~fD~Ii~~  161 (180)
                      .+..... ....+|+|+.+
T Consensus        86 ~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          86 IDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             HHHHHHHHCTTCEEEEEES
T ss_pred             HHHhhhhhccCCceEEeec
Confidence            3332222 35579998865

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.87  E-value=0.021  Score=40.71  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=53.9

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+.+             +......|..+.+....+..
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------------~~~~~~~Dv~~~~~v~~~~~   69 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------------GAHPVVMDVADPASVERGFA   69 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------------TCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------------CCeEEEEecCCHHHHHHHHH
Confidence            478899999998874   33445567999999999987766655432             13356778887766655432


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|++|.|--+
T Consensus        70 ~~~~~~g~iDilVnnAG~   87 (242)
T d1ulsa_          70 EALAHLGRLDGVVHYAGI   87 (242)
T ss_dssp             HHHHHHSSCCEEEECCCC
T ss_pred             HHHHhcCCceEEEECCcc
Confidence            2   23579998877543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.74  E-value=0.05  Score=39.44  Aligned_cols=80  Identities=14%  Similarity=0.075  Sum_probs=55.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++.++.+.+....           ++.....|..+.+....+..
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~-----------~~~~~~~Dv~~~~~~~~~~~   71 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGD-----------NVLGIVGDVRSLEDQKQAAS   71 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----------GEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------CeeEEecccccHHHHHHHHH
Confidence            378899999987764   4445666799999999998877665554322           35567778877765544432


Q ss_pred             ---hCCCCCcEEEEccc
Q 030274          150 ---KYPGGFDLILGADI  163 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~  163 (180)
                         ...++.|+++.+--
T Consensus        72 ~~~~~~g~idilvnnAG   88 (276)
T d1bdba_          72 RCVARFGKIDTLIPNAG   88 (276)
T ss_dssp             HHHHHHSCCCEEECCCC
T ss_pred             HHHHHhCCccccccccc
Confidence               22358999987754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.51  E-value=0.021  Score=38.44  Aligned_cols=47  Identities=19%  Similarity=0.240  Sum_probs=35.2

Q ss_pred             hCCCCCCCCeEEEeCC-cC-ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           68 KNPDVLQASSILELGS-GV-GVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        68 ~~~~~~~~~~vLdlG~-G~-G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      +..+..++++||=.|+ |. |..++.+++. |++|++++.+++-++.+++
T Consensus        21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             HHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc
Confidence            3345568889999885 43 7788877875 8899999998876666654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.45  E-value=0.079  Score=32.10  Aligned_cols=79  Identities=15%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             CCCCeEEEeCC-cCChHHH--HHhhcCCeEEEecCCHH-HHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGS-GVGVTGI--LCSRFCREVLLTDHNEE-VLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~-G~G~~~l--~la~~~~~V~~~D~~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ...++|.=+|. |+|..++  .+...|.+|++.|.... ..    +.+..++          +  ....+...+.     
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~----~~L~~~G----------i--~v~~g~~~~~-----   64 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVT----QRLAQAG----------A--KIYIGHAEEH-----   64 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHH----HHHHHTT----------C--EEEESCCGGG-----
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhh----hHHHHCC----------C--eEEECCcccc-----
Confidence            35678888886 5686664  56667999999998642 22    2333445          2  2222222221     


Q ss_pred             hhCCCCCcEEEEccccccCCchhhHHHH
Q 030274          149 QKYPGGFDLILGADIYILYNRSLLMTSF  176 (180)
Q Consensus       149 ~~~~~~fD~Ii~~d~~y~~~~~~l~~~~  176 (180)
                         -...|+||.++-+= .+.+++..+.
T Consensus        65 ---i~~~d~vV~S~AI~-~~npel~~A~   88 (96)
T d1p3da1          65 ---IEGASVVVVSSAIK-DDNPELVTSK   88 (96)
T ss_dssp             ---GTTCSEEEECTTSC-TTCHHHHHHH
T ss_pred             ---CCCCCEEEECCCcC-CCCHHHHHHH
Confidence               24689999998653 3445555443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.33  E-value=0.039  Score=39.25  Aligned_cols=81  Identities=15%  Similarity=0.142  Sum_probs=55.5

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=.|++.|+   ++..+++.|++|+.++.+.+.++.+.+.   .        ..++.....|..+.+....+..
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~--------~~~~~~~~~Dls~~~~i~~~~~   71 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---L--------EAEAIAVVADVSDPKAVEAVFA   71 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---C--------CSSEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---c--------CCceEEEEecCCCHHHHHHHHH
Confidence            578999999998774   3344556689999999998765544332   2        1346667788887776655433


Q ss_pred             h---CCCCCcEEEEcccc
Q 030274          150 K---YPGGFDLILGADIY  164 (180)
Q Consensus       150 ~---~~~~fD~Ii~~d~~  164 (180)
                      .   ..++.|+++.+-..
T Consensus        72 ~i~~~~g~iDiLinnAg~   89 (241)
T d2a4ka1          72 EALEEFGRLHGVAHFAGV   89 (241)
T ss_dssp             HHHHHHSCCCEEEEGGGG
T ss_pred             HHHHHhCCccEecccccc
Confidence            2   23689999987643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.32  E-value=0.019  Score=39.30  Aligned_cols=42  Identities=21%  Similarity=0.351  Sum_probs=35.6

Q ss_pred             CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHHH
Q 030274           74 QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n  115 (180)
                      +..+||=||+|+ |+.++..|+ +|++|++.|.++..++.++..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l   71 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL   71 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence            567999999998 888887775 699999999999888777754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.073  Score=35.61  Aligned_cols=49  Identities=12%  Similarity=0.057  Sum_probs=37.4

Q ss_pred             HhhCCCCCCCCeEEEeCCcC--ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV--GVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~--G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      |.+..+..++.+||=.|+|.  |..++.+|+. |++|++++.+++-.+.+++
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            33444556788999987654  6777777774 8999999999988887764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.19  E-value=0.035  Score=35.51  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=26.3

Q ss_pred             eEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHH
Q 030274           77 SILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n  115 (180)
                      +|+=+|+  |.+|..++    +.|.+|+.+|.+++.++.++..
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~   42 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE   42 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh
Confidence            4566665  55555555    4588999999999988776543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.18  E-value=0.087  Score=37.45  Aligned_cols=84  Identities=10%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++.+|=-|++.|+   ++..+++.|++|+.+|.++.  +.+...++..+        .++.....|..+.+....+..
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g--------~~~~~~~~Dvs~~~~v~~~~~   72 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLG--------RRVLTVKCDVSQPGDVEAFGK   72 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcC--------CcEEEEEeeCCCHHHHHHHHH
Confidence            578899999987764   44456667999999998763  22333333333        346677888888776655433


Q ss_pred             ---hCCCCCcEEEEcccccc
Q 030274          150 ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y~  166 (180)
                         ...++.|++|.|--++.
T Consensus        73 ~~~~~~G~iDilVnnAG~~~   92 (247)
T d2ew8a1          73 QVISTFGRCDILVNNAGIYP   92 (247)
T ss_dssp             HHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCC
Confidence               22368999998765443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.09  E-value=0.087  Score=37.62  Aligned_cols=86  Identities=14%  Similarity=0.231  Sum_probs=59.6

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEe-cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLT-DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~-D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ..|++||=-|++.|+   ++..+++.|++|+.+ ..+++.++.+.+.+...+        .++.....|..+.+....+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~D~~~~~~v~~~~   75 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--------AQGVAIQADISKPSEVVALF   75 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--------CCceEecCCCCCHHHHHHHH
Confidence            578999988876663   444556678999876 566677888888887765        34667778887766554433


Q ss_pred             h---hCCCCCcEEEEcccccc
Q 030274          149 Q---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~y~  166 (180)
                      .   ...+..|++|.+--...
T Consensus        76 ~~~~~~~g~idilinnag~~~   96 (259)
T d1ja9a_          76 DKAVSHFGGLDFVMSNSGMEV   96 (259)
T ss_dssp             HHHHHHHSCEEEEECCCCCCC
T ss_pred             HHHHHHcCCCcEEEecccccc
Confidence            2   22357999998876544

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.94  E-value=0.057  Score=36.06  Aligned_cols=49  Identities=16%  Similarity=0.288  Sum_probs=35.6

Q ss_pred             HhhCCCCCCCCeEEEeCCcC-ChHHHHHhh-c-CCeEEEecCCHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV-GVTGILCSR-F-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~-G~~~l~la~-~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.+..+..++.+||=+|+|. |..++.+++ . +.+|+++|.+++-++.+++
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            34455566888999999987 555555554 3 4689999999987777664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.76  E-value=0.15  Score=34.08  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             hhCCCCCCCCeEEEeCC-c-CChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274           67 SKNPDVLQASSILELGS-G-VGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ  143 (180)
Q Consensus        67 ~~~~~~~~~~~vLdlG~-G-~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
                      .+..+..++.+||=.|+ | +|..++.+|+. |.+|+++..+++-.+.+++    .+.          . ..++..+.+-
T Consensus        18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga----------~-~vi~~~~~~~   82 (183)
T d1pqwa_          18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV----------E-YVGDSRSVDF   82 (183)
T ss_dssp             HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC----------S-EEEETTCSTH
T ss_pred             HHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccc----------c-ccccCCccCH
Confidence            34445567889999874 3 37777777764 8999999988876666664    331          1 2234444433


Q ss_pred             hhHHHhh-CCCCCcEEEEcc
Q 030274          144 INKIIQK-YPGGFDLILGAD  162 (180)
Q Consensus       144 ~~~~~~~-~~~~fD~Ii~~d  162 (180)
                      .+...+. ....+|+|+.+-
T Consensus        83 ~~~v~~~t~~~g~d~v~d~~  102 (183)
T d1pqwa_          83 ADEILELTDGYGVDVVLNSL  102 (183)
T ss_dssp             HHHHHHHTTTCCEEEEEECC
T ss_pred             HHHHHHHhCCCCEEEEEecc
Confidence            3333333 245799998643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.73  E-value=0.085  Score=31.53  Aligned_cols=75  Identities=12%  Similarity=0.053  Sum_probs=41.6

Q ss_pred             eEEEeCC-cCChHHH--HHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274           77 SILELGS-GVGVTGI--LCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG  153 (180)
Q Consensus        77 ~vLdlG~-G~G~~~l--~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      ||-=+|- |+|..++  .+.+.|.+|.+.|..+..   ..+.++.++          +.+   ..+....       .-.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~---~t~~L~~~G----------i~i---~~gh~~~-------~i~   59 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE---RTAYLRKLG----------IPI---FVPHSAD-------NWY   59 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH---HHHHHHHTT----------CCE---ESSCCTT-------SCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh---hHHHHHHCC----------CeE---Eeeeccc-------ccC
Confidence            4444553 4565554  455679999999987531   222366666          222   1222111       124


Q ss_pred             CCcEEEEccccccCCchhhHHH
Q 030274          154 GFDLILGADIYILYNRSLLMTS  175 (180)
Q Consensus       154 ~fD~Ii~~d~~y~~~~~~l~~~  175 (180)
                      ..|+||.++-+-.. .+++..+
T Consensus        60 ~~d~vV~SsAI~~~-npel~~A   80 (89)
T d1j6ua1          60 DPDLVIKTPAVRDD-NPEIVRA   80 (89)
T ss_dssp             CCSEEEECTTCCTT-CHHHHHH
T ss_pred             CCCEEEEecCcCCC-CHHHHHH
Confidence            68999999877443 3444443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.69  E-value=0.098  Score=37.23  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=52.3

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+.+|.+++..+.++.    .+          ..+.+.|..+.+....+..
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----------~~~~~~Dv~~~~~v~~~~~   68 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----------GAFFQVDLEDERERVRFVE   68 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----------CEEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----------CeEEEEeCCCHHHHHHHHH
Confidence            578999999987764   344566679999999999876654432    11          2356777777665554432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|++|.|--+
T Consensus        69 ~~~~~~G~iDiLVnnAG~   86 (248)
T d2d1ya1          69 EAAYALGRVDVLVNNAAI   86 (248)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHhcCCCCeEEEeCcC
Confidence               223689999877533

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.41  E-value=0.07  Score=35.25  Aligned_cols=41  Identities=27%  Similarity=0.168  Sum_probs=28.6

Q ss_pred             CCeEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHHHH
Q 030274           75 ASSILELGSGV-GV-TGILCSRFCREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        75 ~~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~~n  115 (180)
                      .++||=+|+|- |. ++-.|++.|.+|+.+|.+.+..+.+..+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~   44 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG   44 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc
Confidence            46888899864 43 2334555689999999999866655443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.23  E-value=0.17  Score=35.83  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ++++++|=-|++.  |+   ++..+++.|++|+.++.++...+.+++.....+         +......+..+.+....+
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~~~~~v~~~   76 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---------GALLFRADVTQDEELDAL   76 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---------CCEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC---------cccccccccCCHHHHHHH
Confidence            4789999999753  42   444566779999999998877776665555443         244567777777655544


Q ss_pred             Hh---hCCCCCcEEEEcc
Q 030274          148 IQ---KYPGGFDLILGAD  162 (180)
Q Consensus       148 ~~---~~~~~fD~Ii~~d  162 (180)
                      ..   ...++.|++|.+-
T Consensus        77 ~~~~~~~~g~iDilVnna   94 (256)
T d1ulua_          77 FAGVKEAFGGLDYLVHAI   94 (256)
T ss_dssp             HHHHHHHHSSEEEEEECC
T ss_pred             HHHHHHhcCCceEEEecc
Confidence            32   2235799988664

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.13  Score=36.88  Aligned_cols=83  Identities=16%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             CCeE-EEeCCcCCh---HHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           75 ASSI-LELGSGVGV---TGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        75 ~~~v-LdlG~G~G~---~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      |++| |==|++.|+   ++..+++. |++|+.++.+++.++.+.+.++..+        .++.+...|..+.+....+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dvs~~~sv~~~~~   73 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------LSPRFHQLDIDDLQSIRALRD   73 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------CCCEEEECCTTCHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEEecCCHHHHHHHHH
Confidence            4555 555766654   23345554 7899999999998888888877664        346677888888776554432


Q ss_pred             ---hCCCCCcEEEEccccc
Q 030274          150 ---KYPGGFDLILGADIYI  165 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~y  165 (180)
                         ...++.|++|.|-=+.
T Consensus        74 ~~~~~~g~iDiLVnNAGi~   92 (275)
T d1wmaa1          74 FLRKEYGGLDVLVNNAGIA   92 (275)
T ss_dssp             HHHHHHSSEEEEEECCCCC
T ss_pred             HHHHhcCCcEEEEEcCCcC
Confidence               2235899999887543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.94  E-value=0.091  Score=35.03  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=33.4

Q ss_pred             CCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHH
Q 030274           73 LQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKK  114 (180)
Q Consensus        73 ~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~  114 (180)
                      .++.+||=+|+|. |..++.+++. | ..|+++|.+++-++.+++
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            4678999999987 7777777763 5 588999999987777775

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.88  E-value=0.15  Score=33.63  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=48.5

Q ss_pred             CCCCCCCeEEEeCC-c-CChHHHHHhh-cC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274           70 PDVLQASSILELGS-G-VGVTGILCSR-FC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN  145 (180)
Q Consensus        70 ~~~~~~~~vLdlG~-G-~G~~~l~la~-~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (180)
                      .+..++.+||=+|| | .|..++.+++ .+ .+|+.+|.+++-++.+++.    +.           ...++....+..+
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga-----------~~~i~~~~~~~~~   87 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA-----------DYVINASMQDPLA   87 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC-----------SEEEETTTSCHHH
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC-----------ceeeccCCcCHHH
Confidence            44557889999997 4 3666665555 45 6999999999887777753    30           0223344433333


Q ss_pred             HHHhh-CCCCCcEEEEcc
Q 030274          146 KIIQK-YPGGFDLILGAD  162 (180)
Q Consensus       146 ~~~~~-~~~~fD~Ii~~d  162 (180)
                      ...+. ..+.||+|+-+-
T Consensus        88 ~~~~~~~~~~~d~vid~~  105 (170)
T d1jvba2          88 EIRRITESKGVDAVIDLN  105 (170)
T ss_dssp             HHHHHTTTSCEEEEEESC
T ss_pred             HHHHHhhcccchhhhccc
Confidence            33332 245688887654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.24  Score=34.84  Aligned_cols=82  Identities=16%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             CCCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      +++++||=-|++.  |+   ++..+++.|++|+.++.+++..+.+++.....+         +......+..........
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   73 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---------SDIVLQCDVAEDASIDTM   73 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---------CCCEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC---------CcceeecccchHHHHHHH
Confidence            4788999998865  64   555677889999999999887777776666554         122344444443322222


Q ss_pred             ---HhhCCCCCcEEEEccc
Q 030274          148 ---IQKYPGGFDLILGADI  163 (180)
Q Consensus       148 ---~~~~~~~fD~Ii~~d~  163 (180)
                         .....+..|+++.+-.
T Consensus        74 ~~~~~~~~~~~d~~v~~a~   92 (258)
T d1qsga_          74 FAELGKVWPKFDGFVHSIG   92 (258)
T ss_dssp             HHHHHTTCSSEEEEEECCC
T ss_pred             HHHhhhcccccceEEEeec
Confidence               2234567888887753

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.48  Score=33.42  Aligned_cols=70  Identities=17%  Similarity=0.305  Sum_probs=49.2

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhh---cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274           73 LQASSILELGSGVGV---TGILCSR---FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK  146 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (180)
                      ++++.+|=-|++.|+   ++..+|+   .|++|+.++.+++.++.+.+.+...+      ...++.....|..+.+....
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~------~~~~~~~~~~Dvs~~~~v~~   77 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ------PDLKVVLAAADLGTEAGVQR   77 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC------TTSEEEEEECCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhc------CCceEEEEEccCCCHHHHHH
Confidence            466777777887775   3334454   47899999999999988888777654      12356677888888766555


Q ss_pred             HH
Q 030274          147 II  148 (180)
Q Consensus       147 ~~  148 (180)
                      +.
T Consensus        78 l~   79 (259)
T d1oaaa_          78 LL   79 (259)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.07  E-value=0.63  Score=33.82  Aligned_cols=84  Identities=13%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             CCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH---------HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274           72 VLQASSILELGSGVGV---TGILCSRFCREVLLTDHNE---------EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG  139 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~  139 (180)
                      .++++++|=-|++.|+   ++..+++.|++|+.+|.+.         ..++.+.+.+...+           .....+..
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~~   72 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-----------GKAVANYD   72 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-----------CEEEEECC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc-----------cccccccc
Confidence            3578999999999874   4556677799999998653         33444444444433           13445555


Q ss_pred             CCchhhHHHh---hCCCCCcEEEEcccccc
Q 030274          140 NSDQINKIIQ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       140 ~~~~~~~~~~---~~~~~fD~Ii~~d~~y~  166 (180)
                      +.+..+.+..   ...++.|++|.|--++.
T Consensus        73 ~~~~~~~~v~~~~~~~G~iDiLVnNAGi~~  102 (302)
T d1gz6a_          73 SVEAGEKLVKTALDTFGRIDVVVNNAGILR  102 (302)
T ss_dssp             CGGGHHHHHHHHHHHTSCCCEEEECCCCCC
T ss_pred             hHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            5544433322   23468999998865544

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.98  E-value=0.11  Score=35.76  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=27.4

Q ss_pred             eEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274           77 SILELGSGV-GV-TGILCSRFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        77 ~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~  113 (180)
                      +|-=+|+|- |+ +++.+|+.|.+|++.|.+++.++.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            466677775 53 45566778999999999998777654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.93  E-value=0.44  Score=33.51  Aligned_cols=82  Identities=11%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             eEEEeCCcCCh---HHHHHhhcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---
Q 030274           77 SILELGSGVGV---TGILCSRFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ---  149 (180)
Q Consensus        77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (180)
                      .||=-|++.|+   ++..+++.|++|+.+|. +++.++.+.+.++..+        .++.....|..+.+....+..   
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~Dv~~~~~v~~~~~~~~   74 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--------GQAITFGGDVSKEADVEAMMKTAI   74 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--------CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--------CcEEEEeCCCCCHHHHHHHHHHHH
Confidence            45556666653   33345567899999875 5667777777776664        346667788887766555432   


Q ss_pred             hCCCCCcEEEEcccccc
Q 030274          150 KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~  166 (180)
                      ...++.|++|.|--...
T Consensus        75 ~~~g~iDiLVnnAg~~~   91 (244)
T d1edoa_          75 DAWGTIDVVVNNAGITR   91 (244)
T ss_dssp             HHSSCCSEEEECCCCCC
T ss_pred             HHcCCCCcccccccccc
Confidence            23468999998765443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.84  E-value=0.22  Score=33.35  Aligned_cols=50  Identities=16%  Similarity=0.089  Sum_probs=37.0

Q ss_pred             HhhCCCCCCCCeEEEeCCcC--ChHHHHHhhc-CCeEEEecCCHHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSGV--GVTGILCSRF-CREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G~--G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n  115 (180)
                      |.+..+..++.+||=.|++.  |..++.+++. |++|+++..+++-.+.+++.
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh
Confidence            34455556789999888855  5677777774 79999999988877666654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.36  E-value=0.065  Score=34.10  Aligned_cols=34  Identities=32%  Similarity=0.329  Sum_probs=24.0

Q ss_pred             EEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHH
Q 030274           78 ILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        78 vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~  113 (180)
                      ++=+|+  |.+|..++    +.|.+|+.+|.+++.++.++
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~   40 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA   40 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH
Confidence            444555  55555544    45899999999999887764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.22  E-value=0.39  Score=33.70  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             EEEeCCcCCh---HHHHHhhcCCe-------EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           78 ILELGSGVGV---TGILCSRFCRE-------VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        78 vLdlG~G~G~---~~l~la~~~~~-------V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ||=-|++.|+   ++..+++.|++       |+.++.+++.++.+.+.++..+        .++.....|..+.+....+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--------~~~~~~~~Dvt~~~~v~~~   75 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--------ALTDTITADISDMADVRRL   75 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--------CEEEEEECCTTSHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHH
Confidence            5666887764   34455666776       9999999988888877776654        3456667788877665554


Q ss_pred             Hh---hCCCCCcEEEEcccccc
Q 030274          148 IQ---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       148 ~~---~~~~~fD~Ii~~d~~y~  166 (180)
                      ..   ...++.|+++.|--++.
T Consensus        76 ~~~~~~~~g~iDilvnnAg~~~   97 (240)
T d2bd0a1          76 TTHIVERYGHIDCLVNNAGVGR   97 (240)
T ss_dssp             HHHHHHHTSCCSEEEECCCCCC
T ss_pred             HHHHHHHcCCcceeeccccccc
Confidence            32   23468999998765443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=91.09  E-value=0.23  Score=35.36  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=52.4

Q ss_pred             CCCCeEEEeCC-cC-C---hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274           73 LQASSILELGS-GV-G---VTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI  147 (180)
Q Consensus        73 ~~~~~vLdlG~-G~-G---~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
                      ++++++|=-|+ |+ |   .++..+++.|++|+.++.++...+.+++-.+..+         ...+...+.........+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~---------~~~~~~~d~~~~~~~~~~   73 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN---------SPYVYELDVSKEEHFKSL   73 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT---------CCCEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCC---------ceeEeeecccchhhHHHH
Confidence            47899999996 32 3   2444566679999999998765565554433332         233556666665544333


Q ss_pred             H---hhCCCCCcEEEEccccc
Q 030274          148 I---QKYPGGFDLILGADIYI  165 (180)
Q Consensus       148 ~---~~~~~~fD~Ii~~d~~y  165 (180)
                      .   ....++.|+++.+.-++
T Consensus        74 ~~~~~~~~g~id~lV~nag~~   94 (274)
T d2pd4a1          74 YNSVKKDLGSLDFIVHSVAFA   94 (274)
T ss_dssp             HHHHHHHTSCEEEEEECCCCC
T ss_pred             HHHHHHHcCCCCeEEeecccc
Confidence            2   12346899998877543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.12  Score=30.00  Aligned_cols=46  Identities=22%  Similarity=0.170  Sum_probs=34.0

Q ss_pred             CCCCCCCCeEEEeCCc--CChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           69 NPDVLQASSILELGSG--VGVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        69 ~~~~~~~~~vLdlG~G--~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      .....++.+||=.|+.  +|..++.+++. |.+|+++-.+++-.+.+++
T Consensus        26 ~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          26 AGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             TTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             hhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence            3334467788888773  46777777764 8899999999887777765

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.15  Score=36.04  Aligned_cols=80  Identities=21%  Similarity=0.315  Sum_probs=50.1

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.+++.++.+.+   ..          .+.....+....+..+....
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~---~~----------~~~~~~~d~~~~~~~~~~~~   70 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK---YP----------GIQTRVLDVTKKKQIDQFAN   70 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG---ST----------TEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh---cc----------CCceeeeecccccccccccc
Confidence            578899999987764   444566679999999999865543321   11          24445555444333333322


Q ss_pred             hCCCCCcEEEEcccccc
Q 030274          150 KYPGGFDLILGADIYIL  166 (180)
Q Consensus       150 ~~~~~fD~Ii~~d~~y~  166 (180)
                       ..+..|+++.+.-...
T Consensus        71 -~~~~id~lVn~ag~~~   86 (245)
T d2ag5a1          71 -EVERLDVLFNVAGFVH   86 (245)
T ss_dssp             -HCSCCSEEEECCCCCC
T ss_pred             -ccccceeEEecccccC
Confidence             3457899988876544

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.42  E-value=0.099  Score=35.30  Aligned_cols=49  Identities=14%  Similarity=0.076  Sum_probs=36.2

Q ss_pred             HhhCCCCCCCCeEEEeCCc--CChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGSG--VGVTGILCSR-FCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~G--~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~  114 (180)
                      |.......++.+||=-|++  .|..++.+++ .|++|+++-.+++-.+.+++
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~   74 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV   74 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh
Confidence            4344444567899999964  4778888886 48999999998877777664

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.35  E-value=0.34  Score=33.81  Aligned_cols=70  Identities=19%  Similarity=0.233  Sum_probs=44.9

Q ss_pred             CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +++++|=-|++.|+   ++..+++.|++|+.+|.+++.++       ..+          ......|..+.  .+.....
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~-------~~~----------~~~~~~Dv~~~--~~~~~~~   63 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK-------RSG----------HRYVVCDLRKD--LDLLFEK   63 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-------HTC----------SEEEECCTTTC--HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-------hcC----------CcEEEcchHHH--HHHHHHH
Confidence            68899999988774   34456667999999999876443       222          12344555432  3333333


Q ss_pred             CCCCCcEEEEccc
Q 030274          151 YPGGFDLILGADI  163 (180)
Q Consensus       151 ~~~~fD~Ii~~d~  163 (180)
                       .++.|++|.|--
T Consensus        64 -~g~iD~lVnnAG   75 (234)
T d1o5ia_          64 -VKEVDILVLNAG   75 (234)
T ss_dssp             -SCCCSEEEECCC
T ss_pred             -hCCCcEEEeccc
Confidence             357999988753

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.26  E-value=0.18  Score=34.22  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=24.1

Q ss_pred             eEEEeCCcCChHHHHHh---hcCCeEEEecCCHHHHHHHH
Q 030274           77 SILELGSGVGVTGILCS---RFCREVLLTDHNEEVLKILK  113 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~la---~~~~~V~~~D~~~~~l~~~~  113 (180)
                      +|-=+|.|  ++|+.+|   ..|.+|++.|.++..++.++
T Consensus         2 kI~ViGlG--~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGSG--YVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECCS--HHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECCC--hhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            45556554  4444433   24889999999999887765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.87  E-value=1.6  Score=28.65  Aligned_cols=81  Identities=14%  Similarity=0.111  Sum_probs=49.0

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcC-ChHH-HHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274           64 DYLSKNPDVLQASSILELGSGV-GVTG-ILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS  141 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~-G~~~-l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~  141 (180)
                      +-|.+.....++++||=+|||- |... ..+.+.+.+|+.+.-+.+-.+...+++....         +  +....|...
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~---------~--~~~~~~~~~   75 (171)
T d1p77a1           7 TDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---------N--IQAVSMDSI   75 (171)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---------C--EEEEEGGGC
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc---------c--cchhhhccc
Confidence            3344333345788999999976 3222 2334556899999999877777766665432         1  333444322


Q ss_pred             chhhHHHhhCCCCCcEEEEcccc
Q 030274          142 DQINKIIQKYPGGFDLILGADIY  164 (180)
Q Consensus       142 ~~~~~~~~~~~~~fD~Ii~~d~~  164 (180)
                               ....+|+||.+-++
T Consensus        76 ---------~~~~~diiIN~tp~   89 (171)
T d1p77a1          76 ---------PLQTYDLVINATSA   89 (171)
T ss_dssp             ---------CCSCCSEEEECCCC
T ss_pred             ---------cccccceeeecccc
Confidence                     23467887777554

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=1.2  Score=29.16  Aligned_cols=55  Identities=20%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             HHHhhCCCCCCCCeEEEeCCcCChHHH--HHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274           64 DYLSKNPDVLQASSILELGSGVGVTGI--LCSRFCREVLLTDHNEEVLKILKKNIEH  118 (180)
Q Consensus        64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l--~la~~~~~V~~~D~~~~~l~~~~~n~~~  118 (180)
                      .-|.+..-..++++||=||||--.-++  .+++.+.+++.+.-+++-.+.+.+.+..
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~   63 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH   63 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGG
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhh
Confidence            334443334578999999998633232  4456678899999887665555544433

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=1.4  Score=29.35  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=25.8

Q ss_pred             CCCeEEEeCCcC-ChHH-HHHhhcCCeEEEecCCH
Q 030274           74 QASSILELGSGV-GVTG-ILCSRFCREVLLTDHNE  106 (180)
Q Consensus        74 ~~~~vLdlG~G~-G~~~-l~la~~~~~V~~~D~~~  106 (180)
                      ..++|+=+|+|. |+.+ ..+++.|.+|+..|-++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            567999999998 6533 35667899999999754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.13  E-value=0.33  Score=31.79  Aligned_cols=38  Identities=13%  Similarity=0.040  Sum_probs=27.2

Q ss_pred             eEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHH
Q 030274           77 SILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        77 ~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~  114 (180)
                      +|.=+|+|. | .++..+.+.|.+|++.|.+++.++.+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH
Confidence            566677764 3 3445566678999999999887776654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=87.57  E-value=0.6  Score=32.99  Aligned_cols=87  Identities=8%  Similarity=0.032  Sum_probs=48.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc-hhhHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD-QINKII  148 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  148 (180)
                      +++++||=-|++.|+   ++..+++.|++|+.+.-+.+-.+.+.+-...+.       ..++.+...+..... ....+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~   75 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP-------KVNITFHTYDVTVPVAESKKLL   75 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT-------TSEEEEEECCTTSCHHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCC-------CCCEEEEEeecCCCHHHHHHHH
Confidence            478899999998875   344555678888777433322232322222221       234556666665332 233322


Q ss_pred             h---hCCCCCcEEEEcccccc
Q 030274          149 Q---KYPGGFDLILGADIYIL  166 (180)
Q Consensus       149 ~---~~~~~fD~Ii~~d~~y~  166 (180)
                      .   ...++.|++|.|--...
T Consensus        76 ~~~~~~~g~iDilvnnAG~~~   96 (254)
T d1sbya1          76 KKIFDQLKTVDILINGAGILD   96 (254)
T ss_dssp             HHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEeCCCCCC
Confidence            1   22368999998876544

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.17  E-value=0.76  Score=32.09  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             CeEEEeCCcCChHHHHHh-------hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274           76 SSILELGSGVGVTGILCS-------RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII  148 (180)
Q Consensus        76 ~~vLdlG~G~G~~~l~la-------~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (180)
                      ++||=-|++.|+ |..+|       +.|++|++++.+++.++.+++-.+..         .++.+..+|..+.+....+.
T Consensus         3 KtilITGas~GI-G~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~Dvs~~~~v~~~~   72 (248)
T d1snya_           3 NSILITGCNRGL-GLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---------SNIHILEIDLRNFDAYDKLV   72 (248)
T ss_dssp             SEEEESCCSSHH-HHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC---------TTEEEEECCTTCGGGHHHHH
T ss_pred             CEEEEeCCCCHH-HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC---------CcEEEEEEEeccHHHHHHHH
Confidence            468888887774 44333       35789999999887666665433332         35778889988887665543


Q ss_pred             hh-----CCCCCcEEEEccccc
Q 030274          149 QK-----YPGGFDLILGADIYI  165 (180)
Q Consensus       149 ~~-----~~~~fD~Ii~~d~~y  165 (180)
                      ..     ..++.|++|.|--++
T Consensus        73 ~~i~~~~~~~~iDiLvnNAg~~   94 (248)
T d1snya_          73 ADIEGVTKDQGLNVLFNNAGIA   94 (248)
T ss_dssp             HHHHHHHGGGCCSEEEECCCCC
T ss_pred             hhhHHHhhcCCcceEEeecccc
Confidence            31     246799999886543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.13  E-value=0.57  Score=34.89  Aligned_cols=75  Identities=12%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHH-----------------HHHHHHHHHhcCCCCCCCCCcEEE
Q 030274           75 ASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVL-----------------KILKKNIEHHTSSENPNSDAGLAV  133 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l-----------------~~~~~n~~~n~~~~~~~~~~~~~~  133 (180)
                      |++||=.|+ +|++|-.+++    .|.+|+++|.-..-.                 +..+.--...        ..++.+
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~   71 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--------GKSIEL   71 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--------CCCCEE
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc--------CCCcEE
Confidence            467888876 8998877665    489999999421111                 1111000111        134677


Q ss_pred             EEeecCCCchhhHHHhhCCCCCcEEEE
Q 030274          134 AKLEWGNSDQINKIIQKYPGGFDLILG  160 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~  160 (180)
                      ...|..+.+.+...+.  ..++|+|+=
T Consensus        72 ~~~Dl~d~~~l~~~~~--~~~~d~ViH   96 (393)
T d1i24a_          72 YVGDICDFEFLAESFK--SFEPDSVVH   96 (393)
T ss_dssp             EESCTTSHHHHHHHHH--HHCCSEEEE
T ss_pred             EEccCCCHHHHHHHHH--hhcchheec
Confidence            7888877666555433  236898763

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.03  E-value=1.5  Score=29.08  Aligned_cols=71  Identities=14%  Similarity=0.194  Sum_probs=40.4

Q ss_pred             CCeEEEeCC--cCChHHHHHhhc-CC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274           75 ASSILELGS--GVGVTGILCSRF-CR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK  150 (180)
Q Consensus        75 ~~~vLdlG~--G~G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (180)
                      +.+||=.|+  |.|..++.+|+. |+ .|+++..+++....+.+.   .+.           ...++....+..+.+...
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~ga-----------d~vi~~~~~~~~~~~~~~   96 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGF-----------DAAVNYKTGNVAEQLREA   96 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCC-----------SEEEETTSSCHHHHHHHH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccc-----------eEEeeccchhHHHHHHHH
Confidence            367999884  459999999984 65 577777666543333222   220           123344444333333333


Q ss_pred             CCCCCcEEE
Q 030274          151 YPGGFDLIL  159 (180)
Q Consensus       151 ~~~~fD~Ii  159 (180)
                      .+..+|+|+
T Consensus        97 ~~~GvDvv~  105 (187)
T d1vj1a2          97 CPGGVDVYF  105 (187)
T ss_dssp             CTTCEEEEE
T ss_pred             hccCceEEE
Confidence            456788886

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.43  E-value=1.3  Score=28.32  Aligned_cols=70  Identities=11%  Similarity=-0.024  Sum_probs=39.2

Q ss_pred             eEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274           77 SILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP  152 (180)
Q Consensus        77 ~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      +|+=+|+|  -.|..+    .+.+.+|+.+|.+++......+.....+          +.+...+..+.+.   +....-
T Consensus         5 HiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~----------~~vi~Gd~~d~~~---L~~a~i   69 (153)
T d1id1a_           5 HFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN----------ADVIPGDSNDSSV---LKKAGI   69 (153)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT----------CEEEESCTTSHHH---HHHHTT
T ss_pred             EEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCC----------cEEEEccCcchHH---HHHhcc
Confidence            56666665  444443    3458899999998865443333333332          3455544444332   223345


Q ss_pred             CCCcEEEEc
Q 030274          153 GGFDLILGA  161 (180)
Q Consensus       153 ~~fD~Ii~~  161 (180)
                      .+.|.+++.
T Consensus        70 ~~a~~vi~~   78 (153)
T d1id1a_          70 DRCRAILAL   78 (153)
T ss_dssp             TTCSEEEEC
T ss_pred             ccCCEEEEc
Confidence            577887765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=86.05  E-value=0.65  Score=30.48  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n  115 (180)
                      ++|-=+|+|. | .++..|++.|.+|++.|.+++-++.++.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~   43 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR   43 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc
Confidence            5677788887 4 45556777899999999998877766543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.26  E-value=1.2  Score=27.52  Aligned_cols=47  Identities=23%  Similarity=0.411  Sum_probs=35.1

Q ss_pred             CCeEEEeCCcC-Ch-HHHHHhhcCCeEEEecCC--------HHHHHHHHHHHHHhcC
Q 030274           75 ASSILELGSGV-GV-TGILCSRFCREVLLTDHN--------EEVLKILKKNIEHHTS  121 (180)
Q Consensus        75 ~~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~--------~~~l~~~~~n~~~n~~  121 (180)
                      .++++=+|+|. |+ ++-.++++|.+|+.++..        +++.+.+++.++.++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            35898888774 53 444556679999999854        4788889999988873

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.24  E-value=0.58  Score=30.58  Aligned_cols=39  Identities=21%  Similarity=0.157  Sum_probs=27.3

Q ss_pred             eEEEeCCcC-C-hHHHHHhhcC--CeEEEecCCHHHHHHHHHH
Q 030274           77 SILELGSGV-G-VTGILCSRFC--REVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        77 ~vLdlG~G~-G-~~~l~la~~~--~~V~~~D~~~~~l~~~~~n  115 (180)
                      +|+=+|||. | .++..+.+.+  .+|++.|.+++.++.++++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            577788765 3 3444454455  4899999999988887754

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.22  E-value=0.27  Score=36.60  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=29.3

Q ss_pred             CCCCCeEEEeCCcC-C-hHHHHHhhcCCeEEEecCC
Q 030274           72 VLQASSILELGSGV-G-VTGILCSRFCREVLLTDHN  105 (180)
Q Consensus        72 ~~~~~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~  105 (180)
                      ...+-||||++-+. | +++..||.+|++|+=+|.-
T Consensus         3 PL~girVld~~~~~agp~~~~~lad~GA~VikvE~p   38 (359)
T d1x74a1           3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRP   38 (359)
T ss_dssp             TTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCC
Confidence            35788999999987 5 7888999999999999963

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.19  E-value=0.48  Score=31.37  Aligned_cols=50  Identities=26%  Similarity=0.265  Sum_probs=34.9

Q ss_pred             HhhCCCCCCCCeEEEeCC--cCChHHHHHhhc-CCeEEEecCCHHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGS--GVGVTGILCSRF-CREVLLTDHNEEVLKILKKN  115 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~--G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n  115 (180)
                      |.+.....++.+||=-|+  |.|..++.+|+. |++|+++-.+++-.+.+++.
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l   67 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL   67 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh
Confidence            444443445667887775  347788888875 89999999988766666543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=0.54  Score=32.80  Aligned_cols=44  Identities=14%  Similarity=0.058  Sum_probs=32.8

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHH
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNI  116 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~  116 (180)
                      .+|+++|=-|++.|+   ++..+++.|++|+++|.+.+.++.+.+.+
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   49 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL   49 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Confidence            478999999998874   34456667999999999887665554433

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.48  E-value=2.8  Score=30.75  Aligned_cols=86  Identities=20%  Similarity=0.280  Sum_probs=47.1

Q ss_pred             CCeEEEeCCcCChHHHHHhh-----cCCeEEEecC---------CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274           75 ASSILELGSGVGVTGILCSR-----FCREVLLTDH---------NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN  140 (180)
Q Consensus        75 ~~~vLdlG~G~G~~~l~la~-----~~~~V~~~D~---------~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~  140 (180)
                      +++||=.| |+|++|..+.+     .+.+|+++|.         ..+..+.....+.............+..+...|..+
T Consensus         2 ~MKVLITG-~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           2 HMRVLVCG-GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             cCEEEEeC-CCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            45788555 78998876543     4789999983         112223333333332211111223345666777776


Q ss_pred             CchhhHHHhhCCCCCcEEEEcc
Q 030274          141 SDQINKIIQKYPGGFDLILGAD  162 (180)
Q Consensus       141 ~~~~~~~~~~~~~~fD~Ii~~d  162 (180)
                      .+.+...+... .++|+|+-.-
T Consensus        81 ~~~l~~~~~~~-~~~d~ViH~A  101 (383)
T d1gy8a_          81 EDFLNGVFTRH-GPIDAVVHMC  101 (383)
T ss_dssp             HHHHHHHHHHS-CCCCEEEECC
T ss_pred             HHHhhhhhhcc-ceeehhhccc
Confidence            65555544333 3578887543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=1.5  Score=29.01  Aligned_cols=51  Identities=14%  Similarity=0.160  Sum_probs=30.5

Q ss_pred             HHHHhhCCCCCCCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCCHHHHHHHH
Q 030274           63 NDYLSKNPDVLQASSILELGSGV-GV-TGILCSRFC-REVLLTDHNEEVLKILK  113 (180)
Q Consensus        63 ~~~l~~~~~~~~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~~~~l~~~~  113 (180)
                      .+.+.+.-...++++||=||||- |. +...+++.+ .+++.++.+++.++.+.
T Consensus         6 ~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~   59 (182)
T d1vi2a1           6 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKAL   59 (182)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHH
T ss_pred             HHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHH
Confidence            33444443345789999999984 32 222334445 58888888765444433

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.41  E-value=2  Score=26.44  Aligned_cols=59  Identities=17%  Similarity=0.304  Sum_probs=36.1

Q ss_pred             hHHHHHHHHhhCCCCCCCCeEEEeCCcC-Ch-HHHHHhhcCCeEEEecCC---------HHHHHHHHHHHHHhc
Q 030274           58 GAMLMNDYLSKNPDVLQASSILELGSGV-GV-TGILCSRFCREVLLTDHN---------EEVLKILKKNIEHHT  120 (180)
Q Consensus        58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~---------~~~l~~~~~n~~~n~  120 (180)
                      .+..+.+++..    .+.++|+=+|+|. |+ ++-.+++.|.+|+.++..         +++.+.+++.++.++
T Consensus        17 da~~i~~~~~~----~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~g   86 (123)
T d1nhpa2          17 WAIKLKQKTVD----PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN   86 (123)
T ss_dssp             HHHHHHHHHTC----TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhc----cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCC
Confidence            34445454432    2467898887765 43 233455678999999753         345566667776665

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.38  E-value=2.1  Score=26.12  Aligned_cols=46  Identities=20%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CCeEEEeCCcC-Ch-HHHHHhhcCCeEEEecC--------CHHHHHHHHHHHHHhc
Q 030274           75 ASSILELGSGV-GV-TGILCSRFCREVLLTDH--------NEEVLKILKKNIEHHT  120 (180)
Q Consensus        75 ~~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~--------~~~~l~~~~~n~~~n~  120 (180)
                      .++|+=+|+|. |+ ++..+++.|.+|+.++.        ++++.+.+++.++.++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~g   77 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNN   77 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCC
Confidence            46899998886 53 44455667899999995        4567788888888876

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.20  E-value=0.7  Score=30.82  Aligned_cols=49  Identities=24%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             HhhCCCCCCCCeEEEeCC--cCChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274           66 LSKNPDVLQASSILELGS--GVGVTGILCSRF-CREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        66 l~~~~~~~~~~~vLdlG~--G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~  114 (180)
                      +.+.....++.+||=.|+  |.|..++.+|+. |++|+++..+++-.+.+++
T Consensus        23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~   74 (177)
T d1o89a2          23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS   74 (177)
T ss_dssp             HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHh
Confidence            334333334557776665  346777777774 8999999999887776664

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=83.52  E-value=0.38  Score=33.59  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=24.9

Q ss_pred             CCeEEEeCCcC-ChHH-HHHhhcCCeEEEecCCH
Q 030274           75 ASSILELGSGV-GVTG-ILCSRFCREVLLTDHNE  106 (180)
Q Consensus        75 ~~~vLdlG~G~-G~~~-l~la~~~~~V~~~D~~~  106 (180)
                      +|+|+=||+|. |+.+ ..|++.|.+|+.+|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            47899999997 6543 46677899999999753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=83.38  E-value=2  Score=26.06  Aligned_cols=46  Identities=15%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             CeEEEeCCcC-Ch-HHHHHhhcCCeEEEecC--------CHHHHHHHHHHHHHhcC
Q 030274           76 SSILELGSGV-GV-TGILCSRFCREVLLTDH--------NEEVLKILKKNIEHHTS  121 (180)
Q Consensus        76 ~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~--------~~~~l~~~~~n~~~n~~  121 (180)
                      ++|+=+|+|. |+ ++..+++.|.+|+.++.        ++++.+.+++.++.++.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV   77 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP   77 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCC
Confidence            5788888775 43 33345567899999995        45677788888888873

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=83.33  E-value=0.56  Score=31.68  Aligned_cols=39  Identities=31%  Similarity=0.575  Sum_probs=29.0

Q ss_pred             CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHH
Q 030274           76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKK  114 (180)
Q Consensus        76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~  114 (180)
                      .+|.=||||. | .++..+++.|.+|+..+.+++.++..+.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~   48 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNE   48 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Confidence            3688999987 5 3444566667899999999987776554

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=82.79  E-value=6.3  Score=28.23  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCCCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHh
Q 030274           72 VLQASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHH  119 (180)
Q Consensus        72 ~~~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n  119 (180)
                      ..+|++||=.|+. |++|..+++    .|.+|+++.-+..-.+..+......
T Consensus         8 ~~~gk~VlVTG~s-GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~   58 (342)
T d1y1pa1           8 LPEGSLVLVTGAN-GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK   58 (342)
T ss_dssp             SCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCcCEEEEECCC-CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhcc
Confidence            4468899998864 999987765    4899999887776666555544433

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.54  E-value=2.2  Score=25.81  Aligned_cols=61  Identities=20%  Similarity=0.389  Sum_probs=40.0

Q ss_pred             ceecchHHHHHHHHhhCCCCCCCCeEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCH--------HHHHHHHHHHHHhc
Q 030274           53 QLVWPGAMLMNDYLSKNPDVLQASSILELGSGV-GV-TGILCSRFCREVLLTDHNE--------EVLKILKKNIEHHT  120 (180)
Q Consensus        53 ~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~--------~~l~~~~~n~~~n~  120 (180)
                      .++|.+...+.  +.+     ..++|+=+|+|. |+ ++..++++|.+|+.++..+        ++.+.+.+.++.++
T Consensus         7 ~~i~~s~~~l~--~~~-----~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~G   77 (117)
T d1ebda2           7 NRILDSTGALN--LGE-----VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKG   77 (117)
T ss_dssp             SSEECHHHHHT--CSS-----CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEChhHhhC--hhh-----cCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcC
Confidence            45777655542  111     236899998876 53 3445566799999999544        46677777777776

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.25  E-value=2.2  Score=25.76  Aligned_cols=63  Identities=14%  Similarity=0.260  Sum_probs=40.5

Q ss_pred             CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcC-Ch-HHHHHhhcCCeEEEecCC--------HHHHHHHHHHHHHhcC
Q 030274           52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGV-GV-TGILCSRFCREVLLTDHN--------EEVLKILKKNIEHHTS  121 (180)
Q Consensus        52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~--------~~~l~~~~~n~~~n~~  121 (180)
                      |.++|.+...+     ....  ..++++=+|+|. |+ ++..+++.|.+|+.++..        +++.+.+++.++.++.
T Consensus         5 g~~~~~s~~~l-----~~~~--~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV   77 (115)
T d1lvla2           5 GGPVISSTEAL-----APKA--LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI   77 (115)
T ss_dssp             BTTEECHHHHT-----CCSS--CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             CCcEECChHHh-----Cccc--CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcc
Confidence            55667654332     1222  236899998775 43 333455679999999853        4677788888888863

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.21  E-value=1.1  Score=31.27  Aligned_cols=73  Identities=15%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274           73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ  149 (180)
Q Consensus        73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (180)
                      ++++++|=-|++.|+   ++..+++.|++|+++|.+.+.                   ..++.....|..+.+....+..
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~-------------------~~~~~~~~~Dv~~~~~v~~~~~   65 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA-------------------PKGLFGVEVDVTDSDAVDRAFT   65 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC-------------------CTTSEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch-------------------hcCceEEEEecCCHHHHHHHHH
Confidence            588999999998774   344556679999999986431                   1224456777777765554432


Q ss_pred             ---hCCCCCcEEEEcccc
Q 030274          150 ---KYPGGFDLILGADIY  164 (180)
Q Consensus       150 ---~~~~~fD~Ii~~d~~  164 (180)
                         ...++.|++|.|--+
T Consensus        66 ~~~~~~g~iDiLVnnAG~   83 (237)
T d1uzma1          66 AVEEHQGPVEVLVSNAGL   83 (237)
T ss_dssp             HHHHHHSSCSEEEEECSC
T ss_pred             HHHHhcCCceEEEeeecc
Confidence               223579998877543