Citrus Sinensis ID: 030277
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 180 | 2.2.26 [Sep-21-2011] | |||||||
| Q54HG7 | 303 | Methylglutaconyl-CoA hydr | yes | no | 0.827 | 0.491 | 0.577 | 9e-43 | |
| Q3TLP5 | 296 | Enoyl-CoA hydratase domai | yes | no | 0.911 | 0.554 | 0.529 | 2e-42 | |
| O34893 | 260 | Putative enoyl-CoA hydrat | yes | no | 0.938 | 0.65 | 0.514 | 8e-42 | |
| Q2TBT3 | 296 | Enoyl-CoA hydratase domai | yes | no | 0.911 | 0.554 | 0.517 | 1e-41 | |
| Q86YB7 | 292 | Enoyl-CoA hydratase domai | yes | no | 0.911 | 0.561 | 0.511 | 5e-41 | |
| Q13825 | 339 | Methylglutaconyl-CoA hydr | no | no | 0.927 | 0.492 | 0.491 | 8e-35 | |
| Q9JLZ3 | 314 | Methylglutaconyl-CoA hydr | no | no | 0.927 | 0.531 | 0.491 | 1e-34 | |
| A4YI89 | 259 | 3-hydroxypropionyl-coenzy | yes | no | 0.944 | 0.656 | 0.444 | 6e-34 | |
| P52046 | 261 | 3-hydroxybutyryl-CoA dehy | yes | no | 0.927 | 0.639 | 0.407 | 8e-28 | |
| C6DAL7 | 727 | Fatty acid oxidation comp | yes | no | 0.805 | 0.199 | 0.445 | 4e-27 |
| >sp|Q54HG7|AUHM_DICDI Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 172 bits (437), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 112/149 (75%)
Query: 20 VVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79
VV++RS V VFC+GADLKER MS E +V++LRS+F+ LE L +PTIA I+G A+G
Sbjct: 94 VVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVG 153
Query: 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSG 139
GG EM LACD R+ +++ +GLPETGLAIIPGAGGTQRLPRL+G AK++IFTG +
Sbjct: 154 GGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKELIFTGAILDS 213
Query: 140 KDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
K A+ +GLV Y G+A KA+EIA++I
Sbjct: 214 KRALEIGLVQYETEKGEAFDKAIEIAKQI 242
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Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Dictyostelium discoideum (taxid: 44689) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 8 |
| >sp|Q3TLP5|ECHD2_MOUSE Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L A + ED V++ RS+V VFCAGADLKER QMS E+ +V LR S + A
Sbjct: 68 LLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAA 127
Query: 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P+PTIA +DG ALGGGLE+ALACDLRI +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 128 FPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 187
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 168
++AK++IFTGR+++G A LGLVN+ V + A +AL +AQEI
Sbjct: 188 ALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEI 235
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Mus musculus (taxid: 10090) |
| >sp|O34893|YNGF_BACSU Putative enoyl-CoA hydratase/isomerase YngF OS=Bacillus subtilis (strain 168) GN=yngF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 118/169 (69%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
MLR L+ + I +S+ V++ + K FCAGADLKER ++ ++ V+ ++ T +
Sbjct: 32 MLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKEDQVLESVSLIQRTAA 91
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L+ALP P IA I+G+ALGGGLE+ALACDLRI EAA+LGLPETGLAIIPGAGGTQRLPR
Sbjct: 92 LLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPR 151
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169
L+G+ AK+ I+TGR+V+ +A +GLV + KA E+A I+
Sbjct: 152 LIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDLMPKAEELAAAIS 200
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q2TBT3|ECHD2_BOVIN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 115/168 (68%), Gaps = 4/168 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L A + ED V++ RS V VFCAGADLKER QMS +E+ +V LR + + A
Sbjct: 68 LLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAA 127
Query: 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P PTIA +DG ALGGGLE+ALACDLR+ +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 128 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 187
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 168
++AK++IFTGR++SG A +LGLVN+ V + A +A +AQEI
Sbjct: 188 ALAKELIFTGRRLSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEI 235
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Bos taurus (taxid: 9913) |
| >sp|Q86YB7|ECHD2_HUMAN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 114/168 (67%), Gaps = 4/168 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L + ED V++ RS V VFCAGADLKER QMS +E+ +V LR + + A
Sbjct: 64 LLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAA 123
Query: 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P PTIA +DG ALGGGLE+ALACDLR+ +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 124 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 183
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 168
++AK++IFTGR++SG +A LGLVN+ V + A +A +AQEI
Sbjct: 184 ALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEI 231
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Homo sapiens (taxid: 9606) |
| >sp|Q13825|AUHM_HUMAN Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 122/171 (71%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+++ L A + + D ++IRS VP +FCAGADLKER +MS SE+ +V+ +R+ +
Sbjct: 107 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 166
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 167 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 226
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 167
+G S+AK++IF+ R + GK+A ++GL+++ + Q A KAL++A+E
Sbjct: 227 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLARE 277
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Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q9JLZ3|AUHM_MOUSE Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 121/171 (70%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L+ L A + + D ++IRS VP +FCAGADLKER +M SE+ +V+ +RS +
Sbjct: 82 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIN 141
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 142 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 201
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 167
+G S+AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 202 AIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 252
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Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L L A D V++I + K FCAGAD+ + Q++P+E + R
Sbjct: 32 LLEELDRAVSQAESDPEIRVIII-TGKGKAFCAGADITQFNQLTPAEAWKFSKKGREIMD 90
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+EAL PTIA+I+G ALGGGLE+ALACD+RI E A LGLPE L I PG GGTQRL R
Sbjct: 91 KIEALSKPTIAMINGYALGGGLELALACDIRIAAEEAQLGLPEINLGIYPGYGGTQRLTR 150
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
++GK A +++ TG ++ GKDA GLVN VP + + ++A++I +K
Sbjct: 151 VIGKGRALEMMMTGDRIPGKDAEKYGLVNRVVPLANLEQETRKLAEKIAKK 201
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Plays a role in autotrophic carbon fixation via the 3-hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl-CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crotonyl-CoA. Inactive towards (R)-3-hydroxybutyryl-CoA. Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 6 |
| >sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=crt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 94/167 (56%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
L+ + + I DS V++ + K F AGAD+ E ++M+ E + F
Sbjct: 33 LKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKEMNTIEGRKFGILGNKVFRR 92
Query: 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 121
LE L P IA ++G ALGGG E+A++CD+RI A G PE GL I PG GGTQRL RL
Sbjct: 93 LELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARFGQPEVGLGITPGFGGTQRLSRL 152
Query: 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
VG +AK +IFT + + +A+ +GLVN V + A EIA +I
Sbjct: 153 VGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPSELMNTAKEIANKI 199
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Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 EC: 5 |
| >sp|C6DAL7|FADJ_PECCP Fatty acid oxidation complex subunit alpha OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 9 FETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPI 67
FE + ++ +++ SS P F AGAD+ Q S + + TF + ALP
Sbjct: 53 FEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQIAALPF 112
Query: 68 PTIAVIDGAALGGGLEMALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKS 125
P +A I GA LGGGLE+ALACD R+C E +LGLPE L ++PG+GGTQRLPRL+G
Sbjct: 113 PVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIGLD 172
Query: 126 VAKDIIFTGRKVSGKDAMSLGLVNYYVP 153
A D+I TGR + A+ GLV+ VP
Sbjct: 173 SALDLILTGRHLRANQALRQGLVDEAVP 200
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Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 180 | ||||||
| 255583179 | 325 | Methylglutaconyl-CoA hydratase, mitochon | 0.95 | 0.526 | 0.801 | 6e-76 | |
| 449458986 | 328 | PREDICTED: methylglutaconyl-CoA hydratas | 0.95 | 0.521 | 0.783 | 7e-74 | |
| 296084644 | 644 | unnamed protein product [Vitis vinifera] | 0.95 | 0.265 | 0.789 | 8e-74 | |
| 359473869 | 295 | PREDICTED: methylglutaconyl-CoA hydratas | 0.95 | 0.579 | 0.789 | 1e-73 | |
| 224071169 | 229 | predicted protein [Populus trichocarpa] | 0.95 | 0.746 | 0.760 | 1e-70 | |
| 356563366 | 314 | PREDICTED: methylglutaconyl-CoA hydratas | 0.95 | 0.544 | 0.766 | 1e-69 | |
| 20271005 | 229 | enoyl-CoA hydratase [Arabidopsis lyrata | 0.95 | 0.746 | 0.730 | 5e-67 | |
| 2245034 | 229 | enoyl-CoA hydratase [Arabidopsis thalian | 0.95 | 0.746 | 0.725 | 1e-66 | |
| 334186620 | 301 | enoyl-CoA hydratase [Arabidopsis thalian | 0.95 | 0.568 | 0.725 | 2e-66 | |
| 8919878 | 229 | hypothetical protein [Capsella rubella] | 0.95 | 0.746 | 0.713 | 2e-66 |
| >gi|255583179|ref|XP_002532355.1| Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] gi|223527942|gb|EEF30028.1| Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 137/171 (80%), Positives = 160/171 (93%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
MLRGL++ FETI+ D+SANVVMI SSVPKVFCAGADLKER+ M+PSE+ F+VN+LRSTFS
Sbjct: 97 MLRGLRNTFETINNDASANVVMICSSVPKVFCAGADLKERKIMTPSEVQFFVNSLRSTFS 156
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+E L IPTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRLPR
Sbjct: 157 LVEDLCIPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLPR 216
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVGKSVAK++IFTGRK+ G++AMS+GLVNY VPAG+A+LKALE+A+EINQK
Sbjct: 217 LVGKSVAKELIFTGRKIGGREAMSMGLVNYSVPAGEARLKALEVAREINQK 267
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458986|ref|XP_004147227.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Cucumis sativus] gi|449514688|ref|XP_004164451.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 281 bits (720), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 155/171 (90%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
MLRGL+HAFE++ D S NV+MIRSSVPKVFCAGADLKER++M+ SE+H +V +LRS F+
Sbjct: 100 MLRGLRHAFESVDSDPSVNVMMIRSSVPKVFCAGADLKERKKMAASEVHSFVTSLRSAFT 159
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
FLEALPIPTI+VI+GAALGGGLEMALACDLRICGE A L LPETGLAIIPGAGGT RLPR
Sbjct: 160 FLEALPIPTISVIEGAALGGGLEMALACDLRICGEDAKLSLPETGLAIIPGAGGTARLPR 219
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVGKS+AK++IFTGRKVSG+DA+S+GLVNY V AG+A KALEIAQEIN+K
Sbjct: 220 LVGKSIAKELIFTGRKVSGRDALSIGLVNYCVSAGEAYTKALEIAQEINEK 270
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084644|emb|CBI25767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/171 (78%), Positives = 155/171 (90%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML GL++ FE I+ D+SANVVM+ SSVP+VFCAGADLKER+ M+PSE F+VN+LRSTFS
Sbjct: 416 MLGGLQNIFEAINRDASANVVMLSSSVPRVFCAGADLKERKTMNPSETRFFVNSLRSTFS 475
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
LEAL +PTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRL R
Sbjct: 476 LLEALHVPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLSR 535
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVGKS+AK++IFTGRKV G+DAMS+GLVNY VPAG+A LKALEIAQ INQK
Sbjct: 536 LVGKSIAKELIFTGRKVGGRDAMSVGLVNYCVPAGEAHLKALEIAQHINQK 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473869|ref|XP_002267334.2| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/171 (78%), Positives = 155/171 (90%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML GL++ FE I+ D+SANVVM+ SSVP+VFCAGADLKER+ M+PSE F+VN+LRSTFS
Sbjct: 67 MLGGLQNIFEAINRDASANVVMLSSSVPRVFCAGADLKERKTMNPSETRFFVNSLRSTFS 126
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
LEAL +PTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRL R
Sbjct: 127 LLEALHVPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLSR 186
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVGKS+AK++IFTGRKV G+DAMS+GLVNY VPAG+A LKALEIAQ INQK
Sbjct: 187 LVGKSIAKELIFTGRKVGGRDAMSVGLVNYCVPAGEAHLKALEIAQHINQK 237
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071169|ref|XP_002303368.1| predicted protein [Populus trichocarpa] gi|222840800|gb|EEE78347.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/171 (76%), Positives = 152/171 (88%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
MLRGL++AFETI D SA VV+I SSVPKVFCAGADLKER+ M+PSE+ +VN+LRSTFS
Sbjct: 1 MLRGLRNAFETIESDESAQVVLICSSVPKVFCAGADLKERKTMTPSEVQNFVNSLRSTFS 60
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
F+EAL +PTIAVI+G ALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRLPR
Sbjct: 61 FIEALRVPTIAVIEGVALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLPR 120
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVGKS+AK++IFTGRK+ G++AM +GL NY VPA +A KALEIA+EI QK
Sbjct: 121 LVGKSLAKELIFTGRKIGGREAMPMGLANYSVPASEAHSKALEIAREIIQK 171
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563366|ref|XP_003549935.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/171 (76%), Positives = 147/171 (85%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
MLRGL AFE I++ S ANV MI SSVP VFCAGADLKERR MS SE +V +LRSTFS
Sbjct: 86 MLRGLNQAFELINQKSYANVAMISSSVPGVFCAGADLKERRAMSQSEAKIFVKSLRSTFS 145
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
FLE + +PTIAVI+G ALGGGLEMALACD+RICGE AL+GLPETGLAIIPGAGGTQRLPR
Sbjct: 146 FLEDVRVPTIAVIEGVALGGGLEMALACDIRICGENALMGLPETGLAIIPGAGGTQRLPR 205
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVGK++AKDIIFTGRK+ GK+A+SLGLVNY VPAG+A KAL IA +INQK
Sbjct: 206 LVGKAIAKDIIFTGRKIDGKEALSLGLVNYCVPAGEAYSKALAIAHDINQK 256
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20271005|gb|AAM18495.1|AF494369_1 enoyl-CoA hydratase [Arabidopsis lyrata subsp. petraea] | Back alignment and taxonomy information |
|---|
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 125/171 (73%), Positives = 147/171 (85%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML+ L++AFE+I +DSSA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR FS
Sbjct: 1 MLKSLQNAFESIHQDSSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 61 FMEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 120
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVG+SV+K++IFTGRK+ +A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 121 LVGRSVSKELIFTGRKIDAIEAATKGLVNICVTAGEAHEKAIEMAQQINEK 171
|
Source: Arabidopsis lyrata subsp. petraea Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2245034|emb|CAB10453.1| enoyl-CoA hydratase [Arabidopsis thaliana] gi|7268430|emb|CAB78722.1| enoyl-CoA hydratase [Arabidopsis thaliana] gi|22136626|gb|AAM91632.1| putative enoyl-CoA hydratase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/171 (72%), Positives = 147/171 (85%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML+ L++AFE+I +D+SA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR FS
Sbjct: 1 MLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 61 FIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 120
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVG+SV+K++IFTGRK+ +A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 121 LVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINEK 171
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186620|ref|NP_193413.2| enoyl-CoA hydratase [Arabidopsis thaliana] gi|332658405|gb|AEE83805.1| enoyl-CoA hydratase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/171 (72%), Positives = 147/171 (85%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML+ L++AFE+I +D+SA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR FS
Sbjct: 73 MLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 132
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 133 FIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 192
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVG+SV+K++IFTGRK+ +A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 193 LVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINEK 243
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8919878|emb|CAB96201.1| hypothetical protein [Capsella rubella] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/171 (71%), Positives = 146/171 (85%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML+ L++ FE+I +DSSA VVMIRS VP VFCAGADLKERR MSPSE+H YVN+LR FS
Sbjct: 1 MLKSLQNTFESIHQDSSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
F+EAL IPTIA I+G ALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 61 FIEALSIPTIAAIEGVALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 120
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVG+S++K++IFTGRK+ ++A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 121 LVGRSISKELIFTGRKIDAREAANKGLVNICVTAGEAHEKAIEMAQQINEK 171
|
Source: Capsella rubella Species: Capsella rubella Genus: Capsella Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 180 | ||||||
| ZFIN|ZDB-GENE-030219-147 | 319 | echdc2 "enoyl CoA hydratase do | 0.911 | 0.514 | 0.470 | 6.5e-35 | |
| ZFIN|ZDB-GENE-040801-95 | 325 | auh "AU RNA binding protein/en | 0.905 | 0.501 | 0.473 | 6.5e-35 | |
| DICTYBASE|DDB_G0289471 | 303 | auh "methylglutaconyl-CoA hydr | 0.844 | 0.501 | 0.513 | 3.6e-34 | |
| TIGR_CMR|BA_2551 | 262 | BA_2551 "enoyl-CoA hydratase/i | 0.933 | 0.641 | 0.446 | 3.6e-34 | |
| UNIPROTKB|Q13825 | 339 | AUH "Methylglutaconyl-CoA hydr | 0.927 | 0.492 | 0.426 | 4.6e-34 | |
| UNIPROTKB|J9P2R5 | 340 | AUH "Uncharacterized protein" | 0.927 | 0.491 | 0.415 | 1.2e-33 | |
| MGI|MGI:1338011 | 314 | Auh "AU RNA binding protein/en | 0.927 | 0.531 | 0.426 | 1.2e-33 | |
| MGI|MGI:1289238 | 296 | Echdc2 "enoyl Coenzyme A hydra | 0.911 | 0.554 | 0.464 | 1.2e-33 | |
| UNIPROTKB|F1S750 | 252 | ECHDC2 "Uncharacterized protei | 0.911 | 0.650 | 0.458 | 2.5e-33 | |
| RGD|1306087 | 313 | Auh "AU RNA binding protein/en | 0.927 | 0.533 | 0.415 | 5.2e-33 |
| ZFIN|ZDB-GENE-030219-147 echdc2 "enoyl CoA hydratase domain containing 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 79/168 (47%), Positives = 108/168 (64%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
++ ++ DS+ V++ RS +P VFCAGADLKER QMS +E +V+ LRS + + A
Sbjct: 91 MRDLVSSLQHDSAVRVLVFRSLIPGVFCAGADLKERAQMSNAEAELFVHGLRSLMNDIAA 150
Query: 65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
LP+PTIA +D CDLR A +GL ET ++PGAGG+QRLPR VG
Sbjct: 151 LPMPTIAAVDGFALGGGLELALACDLRTAAHCAQMGLIETTRGLLPGAGGSQRLPRTVGF 210
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 168
+VAK++IFTGR+V G+ A++LGLVN VP Q A +AL +A+EI
Sbjct: 211 AVAKELIFTGRRVGGEQAVNLGLVNRSVPQNQTGDAAHREALSLAREI 258
|
|
| ZFIN|ZDB-GENE-040801-95 auh "AU RNA binding protein/enoyl-Coenzyme A hydratase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 79/167 (47%), Positives = 109/167 (65%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
+ A E++ D++ V++ S VP +FCAGADLKER +M SE+ +V R+ S L A
Sbjct: 97 MSEALESMKTDNTVRTVILCSMVPGIFCAGADLKERAKMQQSEVGPFVTKARTLISELGA 156
Query: 65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
LP+PTIA ID CD+R+ +A +GL ET LAIIPGAGGTQRLPR VG
Sbjct: 157 LPMPTIAAIDGAALGGGLEMALACDIRVAANSAKMGLVETKLAIIPGAGGTQRLPRTVGV 216
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 167
S+AK++IF R ++G++A SLGLVN+ V + A L+AL++A+E
Sbjct: 217 SIAKELIFAARVINGEEAKSLGLVNHAVEQNKGGDAAYLRALDLARE 263
|
|
| DICTYBASE|DDB_G0289471 auh "methylglutaconyl-CoA hydratase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 78/152 (51%), Positives = 103/152 (67%)
Query: 20 VVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXX 79
VV++RS V VFC+GADLKER MS E +V++LRS+F+ LE L +PTIA I+
Sbjct: 94 VVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVG 153
Query: 80 XXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSG 139
CD R+ +++ +GLPETGLAIIPGAGGTQRLPRL+G AK++IFTG +
Sbjct: 154 GGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKELIFTGAILDS 213
Query: 140 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
K A+ +GLV Y G+A KA+EIA++I K
Sbjct: 214 KRALEIGLVQYETEKGEAFDKAIEIAKQIIPK 245
|
|
| TIGR_CMR|BA_2551 BA_2551 "enoyl-CoA hydratase/isomerase family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 75/168 (44%), Positives = 107/168 (63%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L L++ I+E+++ VV++ + K FCAGADLKER M+ ++ V+ +R+T
Sbjct: 34 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTME 93
Query: 61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+E LP P IA I+ CD RI E+A LGL ET LAIIPGAGGTQRLPR
Sbjct: 94 MVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPR 153
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
L+G AK++I+TGR++S ++A GLV + VP + KA+EIA++I
Sbjct: 154 LIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKI 201
|
|
| UNIPROTKB|Q13825 AUH "Methylglutaconyl-CoA hydratase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 73/171 (42%), Positives = 110/171 (64%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+++ L A + + D ++IRS VP +FCAGADLKER +MS SE+ +V+ +R+ +
Sbjct: 107 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 166
Query: 61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 167 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 226
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 167
+G S+AK++IF+ R + GK+A ++GL+++ + Q A KAL++A+E
Sbjct: 227 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLARE 277
|
|
| UNIPROTKB|J9P2R5 AUH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 71/171 (41%), Positives = 110/171 (64%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+++ L A + + D +++RS VP +FCAGADLKER +M+PSE+ +V+ +R+
Sbjct: 108 LVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVID 167
Query: 61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 168 EIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 227
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 167
+G S+AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 228 AIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 278
|
|
| MGI|MGI:1338011 Auh "AU RNA binding protein/enoyl-coenzyme A hydratase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 73/171 (42%), Positives = 109/171 (63%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L+ L A + + D ++IRS VP +FCAGADLKER +M SE+ +V+ +RS +
Sbjct: 82 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIN 141
Query: 61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 142 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 201
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 167
+G S+AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 202 AIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 252
|
|
| MGI|MGI:1289238 Echdc2 "enoyl Coenzyme A hydratase domain containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 78/168 (46%), Positives = 104/168 (61%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L A + ED V++ RS+V VFCAGADLKER QMS E+ +V LR S + A
Sbjct: 68 LLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAA 127
Query: 65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P+PTIA +D CDLRI +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 128 FPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 187
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 168
++AK++IFTGR+++G A LGLVN+ V + A +AL +AQEI
Sbjct: 188 ALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEI 235
|
|
| UNIPROTKB|F1S750 ECHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 77/168 (45%), Positives = 104/168 (61%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L A + ED V++ RS V VFCAGADLKER QMS +E+ +V LR + + A
Sbjct: 24 LLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAA 83
Query: 65 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P PTIA +D CDLR+ +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 84 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 143
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 168
++AK++IFTGR++SG A +LGLVN+ V + A +AL +AQEI
Sbjct: 144 ALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEI 191
|
|
| RGD|1306087 Auh "AU RNA binding protein/enoyl-CoA hydratase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 71/171 (41%), Positives = 109/171 (63%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L+ L A + + D ++IRS VP +FCAGADLKER +M SE+ +V+ +R+ +
Sbjct: 81 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVIN 140
Query: 61 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 141 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 200
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 167
+G ++AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 201 AIGMALAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O34893 | YNGF_BACSU | No assigned EC number | 0.5147 | 0.9388 | 0.65 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 180 | |||
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 1e-106 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 3e-65 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 7e-60 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 3e-48 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 1e-47 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 2e-44 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 1e-42 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 4e-41 | |
| PRK09076 | 258 | PRK09076, PRK09076, enoyl-CoA hydratase; Provision | 4e-39 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 2e-38 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 4e-38 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 4e-36 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 6e-35 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 1e-32 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 4e-32 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 4e-32 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 5e-32 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 9e-32 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 4e-31 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 1e-28 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 2e-28 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 6e-28 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 2e-27 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 2e-27 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 4e-27 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 7e-26 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 3e-25 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 5e-25 | |
| PRK05869 | 222 | PRK05869, PRK05869, enoyl-CoA hydratase; Validated | 6e-25 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 8e-25 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 2e-24 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 4e-24 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 4e-24 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 3e-23 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 1e-22 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 1e-22 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 2e-22 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 4e-22 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 1e-21 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 8e-21 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 1e-20 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 3e-20 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 7e-20 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 2e-19 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 4e-19 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 5e-19 | |
| PRK08290 | 288 | PRK08290, PRK08290, enoyl-CoA hydratase; Provision | 6e-18 | |
| PRK11423 | 261 | PRK11423, PRK11423, methylmalonyl-CoA decarboxylas | 9e-18 | |
| PRK08788 | 287 | PRK08788, PRK08788, enoyl-CoA hydratase; Validated | 1e-17 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 1e-17 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 2e-17 | |
| PRK07938 | 249 | PRK07938, PRK07938, enoyl-CoA hydratase; Provision | 4e-17 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 4e-17 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 7e-17 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 2e-16 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 3e-16 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 3e-16 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 5e-16 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 1e-15 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 1e-15 | |
| PLN03214 | 278 | PLN03214, PLN03214, probable enoyl-CoA hydratase/i | 2e-15 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 3e-15 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 1e-14 | |
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 2e-14 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 3e-14 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 1e-12 | |
| PRK06563 | 255 | PRK06563, PRK06563, enoyl-CoA hydratase; Provision | 2e-12 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 4e-12 | |
| PRK08184 | 550 | PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; | 5e-12 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 5e-12 | |
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 6e-12 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 1e-11 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 1e-11 | |
| TIGR03200 | 360 | TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car | 1e-10 | |
| TIGR03222 | 546 | TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya | 2e-10 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 5e-10 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 9e-09 | |
| PLN02267 | 239 | PLN02267, PLN02267, enoyl-CoA hydratase/isomerase | 2e-08 | |
| PRK07112 | 255 | PRK07112, PRK07112, polyketide biosynthesis enoyl- | 6e-08 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 2e-07 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 2e-07 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 4e-07 | |
| PRK06213 | 229 | PRK06213, PRK06213, enoyl-CoA hydratase; Provision | 0.003 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 305 bits (782), Expect = e-106
Identities = 130/171 (76%), Positives = 152/171 (88%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
MLRGL+ AFE I D+SA VVM+RSSVP VFCAGADLKERR+MSPSE+ +VN+LRSTFS
Sbjct: 23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFS 82
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
LEAL IPTIAV++GAALGGGLE+AL+CDLRICGE A+ GLPETGLAIIPGAGGTQRLPR
Sbjct: 83 SLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPR 142
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LVG+S AK++IFTGR++ ++A S+GLVNY VPAG+A KALE+AQEINQK
Sbjct: 143 LVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQK 193
|
Length = 251 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 3e-65
Identities = 87/168 (51%), Positives = 121/168 (72%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L L++ I+E+++ VV++ + K FCAGADLKER M+ ++ V+ +R+T
Sbjct: 32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTME 91
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+E LP P IA I+G ALGGGLE+ALACD RI E+A LGL ET LAIIPGAGGTQRLPR
Sbjct: 92 MVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPR 151
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
L+G AK++I+TGR++S ++A +GLV + VPA + KA+EIA++I
Sbjct: 152 LIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKI 199
|
Length = 260 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 7e-60
Identities = 78/170 (45%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS--EIHFYVNTLRST 58
ML L A + D VV++ + K FCAGADLKE +S + E ++ L+
Sbjct: 27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQEL 85
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
L LP P IA ++GAALGGGLE+ALACD+RI E A GLPE L ++PG GGTQRL
Sbjct: 86 LRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRL 145
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
PRLVG + A++++ TGR++S ++A+ LGLV+ VP + ALE+A+ +
Sbjct: 146 PRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 3e-48
Identities = 74/171 (43%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L L A E + +D S +++ P F AGAD+KE ++ + + +S
Sbjct: 26 LLTELIQALEKLEQDPSVKAIVLTGG-PGAFSAGADIKEMAAEPLAQQAQFSLEAQDLWS 84
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
LE LP P IA ++G ALGGGLE+ALACD RI + A GLPE L IIPGAGGTQRLPR
Sbjct: 85 RLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEVKLGIIPGAGGTQRLPR 144
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
++G S A +++ TGR++ ++A+ +GLV+ VP Q +A+E+AQ + K
Sbjct: 145 IIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADK 195
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-47
Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 3/170 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTF 59
ML L A + D VV++ + K F AGADLKE + +
Sbjct: 33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLL 91
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
L LP P IA ++G ALGGGLE+ALACD+RI E A GLPE L ++PG GGTQRLP
Sbjct: 92 RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLP 151
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP-AGQAQLKALEIAQEI 168
RL+G+ AK+++ TG +S +A+ LGLV+ VP A + +ALE+A+ +
Sbjct: 152 RLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRL 201
|
Length = 257 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 2e-44
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M + L A E + D + VV++ + + F AG D+K+ + P + L
Sbjct: 33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP----PDELAPVNR 87
Query: 61 FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
FL A+ P P +A ++G A+G G+ +ALACDL E+A LP L + P AGG+
Sbjct: 88 FLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSAL 147
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 177
LPRL+G++ A +++ G +S ++A+ +GLVN VPA + +A A ++ S R
Sbjct: 148 LPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR 207
|
Length = 259 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-42
Identities = 66/171 (38%), Positives = 94/171 (54%), Gaps = 2/171 (1%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFS 60
L L + + +D + VV+I + F AGAD+KE + + TF
Sbjct: 30 LHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFE 88
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+E P IA I GAALGGGLE+A++C +R E+A LGLPE L +IPG GTQRLPR
Sbjct: 89 RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPR 148
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
VGK+ A +++ T ++G +A+ GLVN P A ++A++I K
Sbjct: 149 YVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGK 199
|
Length = 257 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-41
Identities = 66/167 (39%), Positives = 96/167 (57%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
L+ L + I D + V++ + K F AGAD+ E + ++ E + F
Sbjct: 33 LKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRK 92
Query: 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 121
LE L P IA I+G ALGGG E+++ACD+RI E A G PE GL I PG GGTQRL R+
Sbjct: 93 LENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARI 152
Query: 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
VG AK++I+TG ++ ++A+ +GLVN V + +A +A +I
Sbjct: 153 VGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKI 199
|
Length = 260 |
| >gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 4e-39
Identities = 70/183 (38%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE--------RRQMSPSEIHFYVN 53
L+ LK ++ D ++I K F AGADL R+M+ F
Sbjct: 31 LQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMA---RRF--- 84
Query: 54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 113
F L A +IA I+G A+GGGLE ALACD+RI E A + LPE + ++P AG
Sbjct: 85 --GEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAG 142
Query: 114 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI-NQKV 172
GTQ LP LVG+ AK +I G +V A+ +GLV V G+A+ AL +AQ++ NQ
Sbjct: 143 GTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSP 202
Query: 173 QSV 175
+V
Sbjct: 203 SAV 205
|
Length = 258 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-38
Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 23/178 (12%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK---------ERRQMSPSEIHFYVNTL 55
++ + + ED V+ S P F AGAD+ E ++
Sbjct: 39 VRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALA--------RQG 90
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGAG 113
+ F+ +EALPIP +A I GA LGGGLE+ALAC R+C + +LGLPE L ++PG+G
Sbjct: 91 QQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSG 150
Query: 114 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
GTQRLPRL+G S A D+I TG+++ K A+ LGLV+ VP + L LE+A E+ +K
Sbjct: 151 GTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP--HSIL--LEVAVELAKK 204
|
Length = 708 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 4e-38
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR---QMSPSEIHFYVNTLRSTFSF 61
L A + + S +++ S+ F GAD+ E E+ +++ S F+
Sbjct: 39 LGEALDALEAQSDLKGLLLTSAKD-AFIVGADITEFLSLFAAPEEELSQWLHFANSIFNR 97
Query: 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 121
LE LP+PT+A I+G ALGGG E LA D R+ A +GLPET L I+PG GGT RLPRL
Sbjct: 98 LEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRL 157
Query: 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 167
+G A + I G+ V +DA+ +G V+ V + Q AL + ++
Sbjct: 158 IGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQ 203
|
Length = 715 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 4e-36
Identities = 68/167 (40%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L F +SED +++ KVF AGAD+KE E++ LR T + EA
Sbjct: 40 LAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGAIEMY-----LRHTERYWEA 93
Query: 65 L---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 121
+ P P IA ++G ALGGG E+A+ D+ + GE+A G PE + ++PGAGGTQRL R
Sbjct: 94 IAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRA 153
Query: 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
VGK A + TG V +A+++GLV+ V Q +ALE+A+EI
Sbjct: 154 VGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREI 200
|
Length = 261 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-35
Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L+ AF + E A V+ FCAG DL E R+ E + F ++
Sbjct: 34 LRAAFARLPEGVRAVVL---HGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQY 90
Query: 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
+P IA + GA +GGGLE+A A +R+ E+ LPE I G GG+ R+PRL+G
Sbjct: 91 GRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGV 150
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 170
+ D++ TGR ++ LGL Y VPAG+A KA+E+A+ I Q
Sbjct: 151 ARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQ 196
|
Length = 255 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-32
Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L+ F+ + D V ++ + K F AG DLKE+ S F L +
Sbjct: 36 LEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKR------GWPESGFGGLTS 89
Query: 65 ---LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 121
L P IA ++G A+GGG E+ALACDL + E A LPE + + AGG RLPR
Sbjct: 90 RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQ 149
Query: 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
+G A +I TGR+V+ ++ + LG VN VPAG+ A A +I
Sbjct: 150 IGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDI 196
|
Length = 259 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-32
Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 5/169 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTF 59
++ L A D ++I S K F AGAD+KE M+ S + Y + +
Sbjct: 32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKE---MADLSFMDVYKGDYITNW 87
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
+ + P IA + G ALGGG E+A+ CD+ I + A G PE L ++PG GG+QRL
Sbjct: 88 EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLT 147
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
R VGK+ A D+ TGR + +A GLV+ VPA + +AL A I
Sbjct: 148 RAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTI 196
|
Length = 257 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-32
Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 5/172 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLR-STF 59
+L L + E + D+S V +I + + F AGADL E M+ ++ +N R +
Sbjct: 30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNE---MAEKDLAATLNDPRPQLW 85
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
L+A P IA ++G ALG G E+AL CD+ I GE A GLPE L I+PGAGGTQRL
Sbjct: 86 QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLI 145
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R VGKS+A ++ TG ++ + A GLV+ P +AL++A +I +
Sbjct: 146 RSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARH 197
|
Length = 255 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-32
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 19/153 (12%)
Query: 12 ISEDSSANVVMIRSSVPKVFCAGADLK---------ERRQMSPSEIHFYVNTLRSTFSFL 62
+ D S +++ S P F AGAD+ E + ++ + F+ L
Sbjct: 41 LKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQG--------QVLFAEL 92
Query: 63 EALPIPTIAVIDGAALGGGLEMALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPR 120
EALPIP +A I GA LGGGLE+ALAC R+C + +LGLPE L ++PG+GGTQRLPR
Sbjct: 93 EALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPR 152
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153
L+G S A D+I TG+++ K A+ LGLV+ VP
Sbjct: 153 LIGVSTALDMILTGKQLRAKQALKLGLVDDVVP 185
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 9e-32
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRST 58
L L A + I SS V++ S F GAD+ E + +E+ ++ S
Sbjct: 36 LASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSI 94
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
F+ LE LP+PT+A I+G ALGGG E LA D RI + A +GLPET L I+PG GGT RL
Sbjct: 95 FNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRL 154
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE-IAQEINQKV 172
PR++G A + I +G++ +DA+ +G V+ V A + AL+ + IN K+
Sbjct: 155 PRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKL 209
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-31
Identities = 69/181 (38%), Positives = 91/181 (50%), Gaps = 33/181 (18%)
Query: 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK----ERRQ---------MSPSEIH 49
L AF D +A+V ++ FCAGADLK R M PS +
Sbjct: 33 AALADAFRAFDADDAASVAVL-WGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRM- 90
Query: 50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLA 107
L P IA + G A+ GGLE+AL CDLR+ E A+ G+ G+
Sbjct: 91 --------------RLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVP 136
Query: 108 IIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 167
+I G GT RLPRL+G S A D+I TGR V +A+++GL N VP GQA+ A E+A E
Sbjct: 137 LIDG--GTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAE 194
Query: 168 I 168
+
Sbjct: 195 L 195
|
Length = 254 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-28
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Query: 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL 62
+ F +D V +I + K F AG DLK + + F + + +
Sbjct: 32 FAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF-AGLTEI 90
Query: 63 EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV 122
L P IA ++G A GGG E+ALA D +C + A LPE L I+P +GG RLP+ +
Sbjct: 91 FDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRL 150
Query: 123 GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
++A +++ TGR++ ++A+ G+VN VP + +A E+AQ++
Sbjct: 151 PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQL 196
|
Length = 261 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-28
Identities = 60/182 (32%), Positives = 86/182 (47%), Gaps = 7/182 (3%)
Query: 3 RGLKHA-FETISE-DSSANV-VMIRSSVPKVFCAGADLKE-RRQMSPSEIHFYVNTLRST 58
L+ A F ++E D+ +V V++ + FCAG DLKE S L +
Sbjct: 30 AALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQD---ALPNP 86
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
A+ P I I+GAA+ GGLE+ALACD+ I E A + I+PG G + RL
Sbjct: 87 SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRL 146
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 178
P+ VG A+ + TG + DA+ GLV VP + +A +A I + R
Sbjct: 147 PQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRA 206
Query: 179 LL 180
L
Sbjct: 207 LK 208
|
Length = 258 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-28
Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF-YVNTLRSTF 59
M GL E I+ D S V++R + K F AG D+ + R S +E Y +
Sbjct: 36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVL 95
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG----AGGT 115
LE L +PTIA I GA +GGG +A ACDLRI +A G P +A G
Sbjct: 96 GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFP---IARTLGNCLSMSNL 152
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 166
RL L+G + KD++FT R + ++A++ GLVN V +A +A+
Sbjct: 153 ARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAE 203
|
Length = 262 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-27
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK--ERRQMSPSEIHFYVNTLRST 58
M L A +D + VV++ + K F +GAD+ E + + Y + +
Sbjct: 39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAA 98
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
+ L PTIA I G +GGG+ +ALACD+RI E + G+P L + G G + L
Sbjct: 99 QAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNL 158
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
LVG S AKD+ +T R+ +A+ +GLV+ A + + A I
Sbjct: 159 VDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATI 208
|
Length = 269 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-27
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF 61
+ L A ++ D V+++R + K F GAD+KE + + +++ LR
Sbjct: 36 ILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDA 95
Query: 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 121
+ P+P IA I G LGGGLE+A ACDLRI A G+PE + IP LPRL
Sbjct: 96 VRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVG-IPSVIHAALLPRL 154
Query: 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156
+G + + ++ TG + A++ GLV+ VP +
Sbjct: 155 IGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAE 189
|
Length = 256 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-27
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 22/191 (11%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPK----VFCAGADLKERRQMSPSEIHFYVNTLR 56
MLR + A++ + D IRS + FCAG DLK + P +
Sbjct: 33 MLRIMVDAWDRVDNDPD-----IRSCILTGAGGAFCAGMDLKAATKKPPGD---SFKDGS 84
Query: 57 STFSFLEAL------PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 110
S ++AL P IA ++G A+ GG E+ D+R+ GE+A G+ E ++ P
Sbjct: 85 YDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFP 144
Query: 111 GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 170
G RL R + +VA D++ TGR ++ +A +GL+ + VP GQA KALE+A+ IN
Sbjct: 145 MGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINA 204
Query: 171 K----VQSVFR 177
VQ++ R
Sbjct: 205 NGPLAVQAILR 215
|
Length = 263 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 7e-26
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNT------ 54
M + A + D + V+++ + + FCAGAD+ E + + PS+ +
Sbjct: 34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGN 92
Query: 55 ----LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 110
++ + FL AL P IA I+GA G GL AL CD+R + A +I
Sbjct: 93 RRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIA 152
Query: 111 GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
G + LPRLVG + A D++ + R ++A+ LGLVN VP + + L A+++
Sbjct: 153 EHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDL 210
|
Length = 272 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 3e-25
Identities = 55/143 (38%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 31 FCAGADLKE----RRQMSPSEIHFYVNTLRSTFSFLEALPI-PTIAVIDGAALGGGLEMA 85
FCAG DLK R P R E P P IA ++G AL GG E+A
Sbjct: 60 FCAGMDLKAFARGERPSIPG---------RGFGGLTERPPRKPLIAAVEGYALAGGFELA 110
Query: 86 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 145
LACDL + A GLPE ++ GG RLPR + +A ++ TG ++ + A L
Sbjct: 111 LACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHEL 170
Query: 146 GLVNYYVPAGQAQLKALEIAQEI 168
GLVN GQA ALE+A+ I
Sbjct: 171 GLVNRLTEPGQALDAALELAERI 193
|
Length = 254 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 5e-25
Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 6/173 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRST 58
+ L F+ ISE VV + + KVFCAGADLK R + P ++ + R
Sbjct: 31 LRDELIAVFDEISERPDVRVV-VLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTREC 89
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
F + P IA ++G ALG GL + +CD+ + E A+ GLPE + + AGG +
Sbjct: 90 FHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGL---AGGGKHA 146
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
RL G S+ + ++ TG +V + G++ +P + +A+EIA+EI K
Sbjct: 147 MRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASK 199
|
Length = 257 |
| >gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 6e-25
Identities = 45/124 (36%), Positives = 67/124 (54%)
Query: 29 KVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC 88
++F AG D+ E R +S E + + A+P PT+A I G ALG GL +ALA
Sbjct: 62 EIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAA 121
Query: 89 DLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148
D R+ G+ G E + P G RL R G S AK+++F+GR ++A++LGL+
Sbjct: 122 DWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLI 181
Query: 149 NYYV 152
+ V
Sbjct: 182 DEMV 185
|
Length = 222 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 8e-25
Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 12 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-------EIHFYVNTLRSTFSFLEA 64
I D S V++ + + F AGAD+ E S S + +V ++ + LEA
Sbjct: 42 IEVDESVRAVILTGAGDRAFSAGADIHE---FSASVAAGADVALRDFVRRGQAMTARLEA 98
Query: 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P P IA ++G A GGG E+ A L I E AL PE L + P GGTQRLPRL G+
Sbjct: 99 FPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGR 158
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
A +++ TG S + A+ +GLVN VP + A +A+ I
Sbjct: 159 KRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRI 202
|
Length = 260 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-24
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ------MSPSEIHF-YVNTLRSTFS 60
A I+ D S V I + F +G ++K+ R SP++I Y + ++
Sbjct: 39 ACAAINADRSVRAV-ILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPL 97
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L L +P IA ++G A+G G ++A CD+RI E A L +IPG GG LPR
Sbjct: 98 ALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
++G + A ++ FTG + A+ GLV+ VPA Q A +A+ I
Sbjct: 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERI 205
|
Length = 266 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 4e-24
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 24/185 (12%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTF 59
M L + + +D V I S FCAG D+K + + + +
Sbjct: 31 MFEELIATIKRLKKDRGIRAV-ILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNAN 89
Query: 60 SFLEA------LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAI----- 108
LP+P IA ++G GGGL++AL D+RI AA P+T L+I
Sbjct: 90 LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRI---AA----PDTKLSIMEAKW 142
Query: 109 --IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 166
+P GT L LV K VA+++ +T R S ++A+ LGLV + A AL +A+
Sbjct: 143 GLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSDDPLA--AALALAR 200
Query: 167 EINQK 171
EI Q+
Sbjct: 201 EIAQR 205
|
Length = 262 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 4e-24
Identities = 65/186 (34%), Positives = 91/186 (48%), Gaps = 24/186 (12%)
Query: 12 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS-----TFSFLEALP 66
+ + + ++ S P F AGAD+ QM + T S F +E
Sbjct: 53 LWTNEAIKSAVLISGKPGSFVAGADI----QMIAACKTAQEVTQLSQEGQEMFERIEKSQ 108
Query: 67 IPTIAVIDGAALGGGLEMALACDLRIC--GEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P +A I G+ LGGGLE+ALAC RI LLGLPE L ++PGAGGTQRLP+L G
Sbjct: 109 KPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV 168
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYV--------PAGQAQLKALE-----IAQEINQK 171
A D++ TG+K+ A +G+V+ V PA + ++ LE AQ +
Sbjct: 169 PAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228
Query: 172 VQSVFR 177
S+ R
Sbjct: 229 KLSINR 234
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 3e-23
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL-----------KERRQMSPSEIH 49
L F + D V++ S K F G DL K+ +++
Sbjct: 34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLR 92
Query: 50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 109
+ L++ + + P IA + G +GGG+++ ACD+R A + E L ++
Sbjct: 93 REILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMV 152
Query: 110 PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK-ALEIAQEI 168
G QRLPR++G +++ TGR + +A +GLVN A L A A+EI
Sbjct: 153 ADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREI 212
|
Length = 272 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-22
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLK---ERRQMSPSEIHFYVNTLRSTFSFLEA 64
A T D S V++ + FCAG +L E R PS ++ L + A
Sbjct: 38 ALNTAERDPSIRAVVL-TGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRA 96
Query: 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 124
P P IA ++GAA G G +ALACDL + A + + + P GG+ L R + +
Sbjct: 97 FPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPR 156
Query: 125 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 170
+A +++ G+ +S + +LG+VN GQA +AL +A ++
Sbjct: 157 QLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAA 202
|
Length = 260 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-22
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M L+ A D + +++ + K FCAGADL + + F
Sbjct: 31 MSAQLRAAVAAAEADPDVHALVV-TGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFL 89
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ + P+PTIA ++GAA+G GL +ALA D+RI G AL L + PG G T L R
Sbjct: 90 AVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQR 149
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLV 148
VG VA+ + G + + A+ GL
Sbjct: 150 AVGPQVARAALLFGMRFDAEAAVRHGLA 177
|
Length = 249 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-22
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMSPSEIHFYVNTLRSTF 59
ML+ L A + + +SSA++V++R + + F AG D+K S+ +NT+
Sbjct: 34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIV 91
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
L +P TI+ I G A G GL +AL D I +A L + G+ +IP GG L
Sbjct: 92 VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQ 151
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV---PAGQAQLK 160
+ VG++ AK II+ G+K+S +A+ LGL++ + A+ K
Sbjct: 152 KRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGDFQTAAKQK 195
|
Length = 260 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 4e-22
Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 28/190 (14%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL---------KERRQMSPSEIHFY 51
M R L AF+ D + V++ + + FCAGADL R ++
Sbjct: 32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDR 90
Query: 52 VN-------------TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAAL 98
+ TLR + P IA ++G A+G G M LA D+R+ AA
Sbjct: 91 ADPSDDGVRDGGGRVTLR-----IFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAAR 145
Query: 99 LGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158
G I+P A + LPRLVG A + +++GR ++A+ GLV P +
Sbjct: 146 FGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELL 205
Query: 159 LKALEIAQEI 168
A +A+EI
Sbjct: 206 PAARALAREI 215
|
Length = 296 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 1e-21
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER-RQMSPSEIHFYVN-TLRST 58
ML GL A + I + + ++ + + FC GA+L+ R S+ L +
Sbjct: 32 MLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETA 91
Query: 59 F----SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGA 112
+ L LP P + ++G A G G+ AL DL +C +A L GL +P
Sbjct: 92 YHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGL--VPDG 149
Query: 113 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
G T LPRLVGK+ A ++ G K+ + A+ GLVN V + +A+++A E+
Sbjct: 150 GSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHEL 205
|
Length = 266 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 8e-21
Identities = 55/149 (36%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 13 SEDSSANV-VMIRSSVPKVFCAGADLK-----------ERRQMSPSEIHFYVNTLRSTFS 60
S D + NV V+I S FC+G DLK R S + + L+ +
Sbjct: 46 SLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAIT 105
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+E P IA I GA +GGG+++ ACD+R C E A + E LAI G QRLP
Sbjct: 106 AIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPS 165
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVN 149
+VG A ++ TGR+ SG +A LGLV+
Sbjct: 166 IVGYGNAMELALTGRRFSGSEAKELGLVS 194
|
Length = 275 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-20
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE--RRQMSPSEIHFYVNTLRST 58
M+ L + + D A V+++ + + AG DLKE R + EI +
Sbjct: 40 MIDVL----DALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAY 94
Query: 59 --FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 116
+ L PTIA+++G GGG +ACDL I + A GL E I PG G ++
Sbjct: 95 GWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSK 154
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+ VG A I TG +G+ A +GLVN VP Q + + E+A ++ +K
Sbjct: 155 AMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEK 209
|
Length = 275 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 3e-20
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 11/183 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER----RQMSPSEIHFYVNTLR 56
+++ L A ED VV++ + K FC+G D K R V ++
Sbjct: 35 IIQALDDA----REDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQ 90
Query: 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 116
P P IA+++G A+GGG + + CDL I E A G + G G+
Sbjct: 91 RQIRTC---PKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKVGSFDGGYGSS 147
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 176
+ R+VG+ A++I F R+ K A+ +GLVN VP + + + +EI QK
Sbjct: 148 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAI 207
Query: 177 RIL 179
R+L
Sbjct: 208 RML 210
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-20
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 4/177 (2%)
Query: 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL 62
L AF+TI++D VV++ P F G + + + F L S L
Sbjct: 35 DQLHEAFDTIAQDPRYKVVILTG-YPNYFATGGTQEGLLSLQTGKGTFTEANLYS--LAL 91
Query: 63 EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV 122
PIP IA + G A+GGGL + L D+ + ++ PG G T LP +
Sbjct: 92 N-CPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKL 150
Query: 123 GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRIL 179
G ++ ++++ T R G + G+ +P + KALE+A+ + +K + +L
Sbjct: 151 GLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLL 207
|
Length = 249 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-19
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 13 SEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAV 72
+ D SA +++ VFCAGADL + + + L ++A P+P IA
Sbjct: 39 AVDESARAIVLTGQGT-VFCAGADLSG--DVYADDFP---DALIEMLHAIDAAPVPVIAA 92
Query: 73 IDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIF 132
I+G A+G GL++A+ACDLR+ A P I +RL LVG A+ ++
Sbjct: 93 INGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152
Query: 133 TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 165
K++ + A++ G+ N AQ A EIA
Sbjct: 153 GAEKLTAEQALATGMANRIGTLADAQAWAAEIA 185
|
Length = 243 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-19
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 11/177 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRS 57
++ L AF + D S V++ + K FCAGADL ++M S E L
Sbjct: 32 VIAELTAAFRALDADDSVRAVVL-AGAGKAFCAGADLNWMKKMAGYSDDENRADARRLAD 90
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
+ P P IA + G A GG+ + ACD+ + + A+ L E L +IP
Sbjct: 91 MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIP----ATI 146
Query: 118 LP---RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
P R +G+ A+ T + +A+ LGLV+ VPA K E+ +
Sbjct: 147 SPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVAN 203
|
Length = 262 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 5e-19
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS-TF 59
M+ L AF+ + ED S V+++ S FC+G DL + V + +
Sbjct: 38 MMVELAAAFKRLDEDDSVKVIILTGSGR-AFCSGVDLTA----AEEVFKGDVKDVETDPV 92
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
+ +E P I I+G A+ G E+ALACD+ + A I P G +Q+L
Sbjct: 93 AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLS 152
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
R++G + A+++ T ++ + A GLVN+ V + KA E+A+ I
Sbjct: 153 RIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAI 201
|
Length = 265 |
| >gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 6e-18
Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 39/197 (19%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE---RRQMSPS----------- 46
ML L AF D + V+++ + F AG DL R P
Sbjct: 32 MLYELDAAFRRAEADDAVRVIVLAGAGKH-FSAGHDLGSGTPGRDRDPGPDQHPTLWWDG 90
Query: 47 ------------EIHFYV-NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC 93
E Y+ R LP PTIA + GA + GGL +A CDL +
Sbjct: 91 ATKPGVEQRYAREWEVYLGMCRR-----WRDLPKPTIAQVQGACIAGGLMLAWVCDLIVA 145
Query: 94 GEAALLGLPETGLAIIPGAGGTQRL--PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 151
+ A P + G G + P +G AK+++FTG +++ +A LG+VN
Sbjct: 146 SDDAFFSDPVVRM----GIPGVEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRV 201
Query: 152 VPAGQAQLKALEIAQEI 168
VP + + + LE+A+ I
Sbjct: 202 VPRDELEAETLELARRI 218
|
Length = 288 |
| >gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 9e-18
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
++ L A ++ VV++R+ KV+ AG D+ E + Y + LR
Sbjct: 32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLS-YDDPLRQIL 89
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
++ P P IA+++G+ GG E+ ++CDL I + + L + G
Sbjct: 90 RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFT 149
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
G + K++ FT ++ + A+++G++N+ V + + L++A I++K
Sbjct: 150 NDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201
|
Length = 261 |
| >gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-17
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 1 MLRGLKHAFETISEDSSANVVMIR-----SSVPKVFCAGADL---------KERRQMSPS 46
+L + + I + + + + S VP VF G DL +R +
Sbjct: 44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLA- 102
Query: 47 EIHFY-------VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALL 99
Y V+ F +IA++ G ALGGG E AL+ I A +
Sbjct: 103 ----YARACVDGVHAFHRGF----GAGAISIALVQGDALGGGFEAALSHHTIIAERGAKM 154
Query: 100 GLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158
G PE + PG G L R VG +A+++I +G+ + ++ +GLV+ V GQ +
Sbjct: 155 GFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGE 213
|
Length = 287 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 1e-17
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 35/185 (18%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF--- 61
LK A +S D+S VV++ + + F +GAD K S + R T++
Sbjct: 42 LKEALAEVSYDNSVRVVVL-TGAGRGFSSGADHK-----SAGVVPHVEGLTRPTYALRSM 95
Query: 62 ---------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAAL---------LGLPE 103
L L P IA ++G A+GGGL +ALA D+R+ +A L E
Sbjct: 96 ELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASE 155
Query: 104 TGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163
GL+ + LPR +G S A +I+ TGR V ++A +GLV+ VP Q
Sbjct: 156 LGLSYL--------LPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA 207
Query: 164 IAQEI 168
IA +
Sbjct: 208 IAARM 212
|
Length = 276 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-17
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 13/155 (8%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR-------QMSPSEIHFYVN 53
M L+ A E + D + +++ + + FCAG DL ER + + FY
Sbjct: 27 MHLELREALERVERDDARALML--TGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNP 84
Query: 54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 113
+R L ALP+P + ++G A G G +ALACD+ + E+A + +IP +G
Sbjct: 85 LVRR----LRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSG 140
Query: 114 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148
GT LPRLVG++ A + G K+ + A S GL+
Sbjct: 141 GTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLI 175
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-17
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L A D VV++R+ + F AG D+KE + N R F+ A
Sbjct: 33 LADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDAN--RGCFAAFRA 89
Query: 65 L---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGA-GGTQRLPR 120
+ +P IA + G LGGG+ + D+ + + A GLPE + GA G L R
Sbjct: 90 VYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPE----VDRGALGAATHLQR 145
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 178
LV + + + + FT ++ + G V VP Q ALE+A++I K V R
Sbjct: 146 LVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRA 203
|
Length = 249 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 4e-17
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE-----RRQMSPSEIHFY---- 51
M+R + A + +D + V+I + + FCAG D++ R + F+
Sbjct: 31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEY 90
Query: 52 -VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 110
+N L + + P P IA++DG +GGG+ ++ RI E + +PETG+ P
Sbjct: 91 RLNALIARY------PKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFP 144
Query: 111 GAGGTQRLPRL---VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156
GGT L R +G +A TG ++S DA+ GL +++VP+
Sbjct: 145 DVGGTYFLSRAPGALGTYLA----LTGARISAADALYAGLADHFVPSAD 189
|
Length = 342 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-17
Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 8/181 (4%)
Query: 5 LKHAFETISEDSSANVVMIRSSVP--KVFCAGADLKERRQ----MSPSEIHFYVNTLRST 58
+ AF +D + V+++ + K FC+G D K R + I +N L
Sbjct: 51 MIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIP-RLNVLDLQ 109
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
+ +P P IA++ G A+GGG + + CDL I + A+ G + G G+ L
Sbjct: 110 -RLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYL 168
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 178
R+VG+ A++I F R+ ++A+ +GLVN VP + + ++ A+E+ K + R+
Sbjct: 169 ARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRM 228
Query: 179 L 179
L
Sbjct: 229 L 229
|
Length = 282 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-16
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ---MSPSEIHFYVNTL------ 55
+ AF +D + V+++ + K FC+G D K R + + +N L
Sbjct: 45 MIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVP-RLNVLDLQRLI 103
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG-- 113
R+ P P IA++ G A+GGG + L CDL I + A+ G +TG P G
Sbjct: 104 RT-------CPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFG--QTG----PKVGSF 150
Query: 114 ----GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169
G L R+VG+ A++I F R+ ++A+ +GLVN VP + + + +E+
Sbjct: 151 DGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREML 210
Query: 170 QKVQSVFRIL 179
Q R L
Sbjct: 211 QNSPMALRCL 220
|
Length = 273 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 3e-16
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGAD--LKERRQMSPSEIHFYVNTLRSTFSFL 62
L HA + D V+++ + K FC G D + I + L S +
Sbjct: 34 LIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSA---I 90
Query: 63 EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLAIIPGAGGTQRLPR 120
+P P IA + G A+GGG + CDL I E A G P+ G ++ PG G T L R
Sbjct: 91 RDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVG-SVDPGYG-TALLAR 148
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+VG+ A++I + R+ + ++A+++GLVN VP Q + + EI +K
Sbjct: 149 VVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEK 199
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-16
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML L+ A + I+ D S VV++ ++ K FCAG DLKE R + +F R+ F+
Sbjct: 39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRA-ARGLAYF-----RALFA 91
Query: 61 F-------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAI----- 108
+ ALP P IA + G A G ++ +CDL + + A +P G+ I
Sbjct: 92 RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVP--GVNIGLFCS 149
Query: 109 IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
P L R V + A +++ TG + A GLVN VPA +A I
Sbjct: 150 TPMVA----LSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVI 205
Query: 169 NQKVQSVFRI 178
K + RI
Sbjct: 206 AAKSPAAVRI 215
|
Length = 266 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-16
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 30/164 (18%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---------HFY 51
M R L+ A + + ED A +++ + + FCAG DL +R ++P FY
Sbjct: 32 MHRELREALDQV-EDDGARALLL-TGAGRGFCAGQDLADRD-VTPGGAMPDLGESIETFY 88
Query: 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAAL-------LGLPET 104
+R L ALP+P IA ++G A G G +ALACD+ + +A +GL
Sbjct: 89 NPLVRR----LRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGL--- 141
Query: 105 GLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148
+P +GGT LPRLVG + A + G K+S + A GL+
Sbjct: 142 ----VPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181
|
Length = 262 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-15
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 31 FCAGADLKE----RRQMSPSEIHFYVNTLRSTFSFLEAL---PIPTIAVIDGAALGGGLE 83
FC+G D+ E +M E+ + R T ++A+ P P IA +DG G G
Sbjct: 74 FCSGGDVHEIIGPLTKMDMPELLAFT---RMTGDLVKAMRACPQPIIAAVDGVCAGAGAI 130
Query: 84 MALACDLRICGEAALLG--LPETGLAIIPGA--GGTQRLPRLVGKSVAKDIIFTGRKVSG 139
+A+A DLR+ +A GLA GA G LPR++G+ A ++++TGR +S
Sbjct: 131 LAMASDLRLGTPSAKTAFLFTRVGLA---GADMGACALLPRIIGQGRASELLYTGRSMSA 187
Query: 140 KDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
++ G N V + +A +A+ +
Sbjct: 188 EEGERWGFFNRLVEPEELLAEAQALARRL 216
|
Length = 277 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 1e-15
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE----RRQMSPSEIHFYVNTLRSTFS 60
L+ ++ ED + VM++ S + FCAG D+ R++ SP I + ++L S
Sbjct: 69 LQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIY 127
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L P +A+++G +GGG +++ R+ + + PET + P AG + L
Sbjct: 128 LLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSH 187
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY-----VPAGQAQLKAL 162
L G+ + + + TG K+SG + ++ GL +Y +P + QLK L
Sbjct: 188 LPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKL 233
|
Length = 401 |
| >gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-15
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 6/161 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPK-VFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
M R L A + D + V+ S + + VF AG D+ E S Y +
Sbjct: 39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAAR-YAEFWLTQT 97
Query: 60 SFLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAI-IPGAGGT 115
+FL L + T+ I GA GG ++L CD R+ +GL E L I +P
Sbjct: 98 TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWAR 157
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156
+ R++ + VA+ ++ GR V +A LGL++ VPA
Sbjct: 158 LFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198
|
Length = 278 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-15
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-ERRQM--SPSEIHFYVNTLRS 57
M+ L A ++ D++ VV++ + K FCAG DL R QM + L
Sbjct: 33 MIAELTTAARRLAADAAVRVVVL-TGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAM 91
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
L LP P I I G A GGG+ + CD+ I A GL ET L +IP
Sbjct: 92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYV 151
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154
+ R +G++ A+ + + R ++A+ LGL++ VPA
Sbjct: 152 VAR-MGEANARRVFMSARLFDAEEAVRLGLLSRVVPA 187
|
Length = 262 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 41/199 (20%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK---ERRQMSPSEIHFY-----V 52
L+ A E D +V+++ S K FCAG DL E + V
Sbjct: 38 TPLELRAAVERADLDPGVHVILV-SGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAV 96
Query: 53 NTL---------------RST--FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGE 95
N L R F L PT+A + G + GG ++AL CD I +
Sbjct: 97 NHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAAD 156
Query: 96 AALLGLPETGLAIIPGAG------GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 149
A +G P T + +P G G QR AK ++FTG ++G A GL
Sbjct: 157 DAKIGYPPTRVWGVPATGMWAYRLGPQR---------AKRLLFTGDCITGAQAAEWGLAV 207
Query: 150 YYVPAGQAQLKALEIAQEI 168
VP + + + + I
Sbjct: 208 EAVPPEELDERTERLVERI 226
|
Length = 302 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ--MSPSEIHFYVNTLRSTFSFL 62
L+ AF +DSS V+++ K FC+G D R + + +N L +
Sbjct: 99 LQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQ-I 157
Query: 63 EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG------GTQ 116
LP P IA++ G A+GGG + + CDL I + A+ G +TG P G G+
Sbjct: 158 RRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFG--QTG----PKVGSFDAGYGSS 211
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153
+ RLVG+ A+++ F R + +A+ +GLVN VP
Sbjct: 212 IMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVP 248
|
Length = 327 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-14
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-----TL 55
M+R L A + + D+S +++R + F AGADL +Q +++ + N L
Sbjct: 34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQ--SADLDYNTNLDDAREL 90
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
L L IPT+AV+ GAA GG L + CD+ I + A L E + + P A +
Sbjct: 91 AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAP-AVIS 149
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163
+ + +G+ A+ T + G+ A LGL+ PA + + +
Sbjct: 150 PFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEA 197
|
Length = 265 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-12
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLKE-RRQMSPSEIHFYVN--TLRSTFSF-LE 63
A ED S ++I + KVF G DL E +R + ++ V L + SF ++
Sbjct: 37 ALRLAEEDPSVRFLLINA-NGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIK 95
Query: 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG 123
LP P I +DGA G MA+A D I G+ + P AGG L R +G
Sbjct: 96 QLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIG 155
Query: 124 KSVAKDIIFTGRKVSGKDAMSLGLV 148
+ A + TG ++ + A+ G V
Sbjct: 156 LNRATHLAMTGEALTAEKALEYGFV 180
|
Length = 255 |
| >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 68 PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVA 127
P + + G L G+E+ LA D+ + + E I+P G T R P+ G A
Sbjct: 94 PLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNA 153
Query: 128 KDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
+ TG + ++A+ LGLV VP G+ +A+E+A+ I
Sbjct: 154 MRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERI 194
|
Length = 255 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 4e-12
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M+ L A EDS+ V++ + P F GA + E P + + +L
Sbjct: 28 MIAALSAALGEHLEDSALRAVLLDAEGPH-FSFGASVAEHM---PDQCAAMLASLHKLVI 83
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ P+P + + G LGGGLE+A A +L A LG PE L + A LP
Sbjct: 84 AMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCL-LPE 142
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVN 149
+G+ A+D++++GR + G + +GL N
Sbjct: 143 RMGRVAAEDLLYSGRSIDGAEGARIGLAN 171
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-12
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 20 VVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALP-------IPTIAV 72
V++ S+ +VFC+GA++ + S + VN + T + + IA
Sbjct: 73 TVVVTSAKDRVFCSGANI---FMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAA 129
Query: 73 IDGAALGGGLEMALACD--LRICGEAALLGLPETG-LAIIPGAGGTQRLPRLVGK-SVAK 128
++G GGG E+ALACD + + ++ + LPE L ++PG GG L R+ K V +
Sbjct: 130 VNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGG---LTRVTDKRKVRR 186
Query: 129 DI--IF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 167
D+ IF V GK A+ LV+ V + K E A E
Sbjct: 187 DLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAE 229
|
Length = 550 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 5e-12
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 26/176 (14%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE----------RRQMSPSEIHF 50
M+ L F ED S +V+++ + FCAG D+ R + +
Sbjct: 37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEY 95
Query: 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 110
+N + +T+S + +++++G +GGG +++ RI E + +PET L + P
Sbjct: 96 MLNYVMATYSKAQ------VSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFP 149
Query: 111 GAGGT---QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163
G + RLP G+ V TG ++ G + ++ GL ++VP+ +L ALE
Sbjct: 150 DVGASYFLSRLPGFFGEYVG----LTGARLDGAEMLACGLATHFVPS--TRLTALE 199
|
Length = 381 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 6e-12
Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLR 56
M+ LK +E+ E+ V+++ S + FC+GAD+ + + E + L
Sbjct: 70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLY 128
Query: 57 STFSFLEALPI-PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
F +L+ + P +A++DG +G G +++ R+ + + PE + P AG +
Sbjct: 129 K-FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGAS 187
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 151
L RL G + + + TG+K++G + ++ GL +Y
Sbjct: 188 YYLSRLPG-YLGEYLALTGQKLNGVEMIACGLATHY 222
|
Length = 407 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNT-----L 55
M R L + + D VV+IR K F AG DL +M+ F V
Sbjct: 40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADD---FEVRARVWREA 95
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
R + P ++ I G A+G GL AL D+ I + A + T L + G
Sbjct: 96 RDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAA 155
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSV 175
P L G + AK + VSG++A +GLV+ V + KALE+A+ + Q+
Sbjct: 156 IVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTA 215
Query: 176 FR 177
R
Sbjct: 216 IR 217
|
Length = 268 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 31 FCAGADLKERR----QMSPSEIHFYVNTLRST-FSFLE------ALPIPTIAVIDGAALG 79
FC+G D + R Q + + V+ R+ LE +P IAV+ G A G
Sbjct: 89 FCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAG 148
Query: 80 GGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVS 138
GG + + CDL + E A + + G G+ L R VG+ A++I F GR S
Sbjct: 149 GGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYS 208
Query: 139 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRIL 179
++A +G VN VP + + +ALE A+EIN K + R+L
Sbjct: 209 AEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249
|
Length = 302 |
| >gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-10
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRS 57
M++ + AF S D V+ + K FC G + KE + +P E Y+
Sbjct: 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFND 115
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLAIIPGAGGT 115
S + P I ++G +GGG E+ +A D I + A G P+ G A I GA T
Sbjct: 116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGA--T 173
Query: 116 QRLPRLVGKSVAKDIIFTG---RKVSGKDAMSLGLVNYYVPA 154
LP ++G + + +G S A LG++ VPA
Sbjct: 174 DFLPLMIG---CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360 |
| >gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-10
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 14 EDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIHF--YVNTLR------STFSFLEA 64
E V++ S +VFC+GA++ + + +++F + N R S S L+
Sbjct: 63 EHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122
Query: 65 LPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETG-LAIIPGAGGTQRL--P 119
L A ++G GGG E+ALACD + + ++ + LPE L ++PG GG R+
Sbjct: 123 L-----AAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDK 177
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 165
R V + A V GK A LV+ V Q +A E+A
Sbjct: 178 RRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELA 227
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-10
Identities = 41/121 (33%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 31 FCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA---LPIPTIAVIDGAALGGGLEMALA 87
FCAGADL E V R + L A LP P IA IDG GG + A
Sbjct: 63 FCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGA 122
Query: 88 CDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGL 147
CD+ + G + L E + + P LPRL ++ A+ TG K +A +GL
Sbjct: 123 CDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR-YYLTGEKFGAAEAARIGL 181
Query: 148 V 148
V
Sbjct: 182 V 182
|
Length = 260 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 9e-09
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA 64
L E +D S +++I+ + F AG DLK FY + S S LE
Sbjct: 43 LAEFLEQWEKDDSVELIIIKG-AGRAFSAGGDLK----------MFY-DGRESDDSCLEV 90
Query: 65 LPI-------------PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG 111
+ +A++ G +GGG + + R+ E + PE +
Sbjct: 91 VYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTD 150
Query: 112 AGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156
G + L RL G + + + TG +++GK+ ++ GL ++VP+ +
Sbjct: 151 CGFSYILSRLPG-HLGEYLALTGARLNGKEMVACGLATHFVPSEK 194
|
Length = 379 |
| >gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK--ERRQMSPSEIHFYVNTLRSTFSFL 62
++ A + ++ V+I ++ K F G DL + +PS +H V LR + L
Sbjct: 31 IRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADL 90
Query: 63 EALPIPTIAVIDGAALGGGLEMALACDLRI---------CGEAAL-LGLPETGLAIIPGA 112
+LP+PTIA + G A G +AL+ D + E + L LP+ +A++
Sbjct: 91 ISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAK 150
Query: 113 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148
G+ R D++ K++ ++A+ +G+V
Sbjct: 151 IGSPAARR--------DVLLRAAKLTAEEAVEMGIV 178
|
Length = 239 |
| >gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
Query: 16 SSANVVMIRSSVPKVFCAGADLKE--RRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI 73
+A +V++ +P+VFC GAD + + L + L P TIA +
Sbjct: 45 HAATIVVLEG-LPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHV 103
Query: 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFT 133
G GG+ A D+ I E A L E +IP A L R +G A +
Sbjct: 104 RGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIP-ACVLPFLIRRIGTQKAHYMTLM 162
Query: 134 GRKVSGKDAMSLGLVNYYVPAGQAQLKA 161
+ V+ + A S GLV+ Y L+
Sbjct: 163 TQPVTAQQAFSWGLVDAYGANSDTLLRK 190
|
Length = 255 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 16/166 (9%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF-SFLEALP 66
+ I+ D VV++ + FC GADL E +P F ++ LR TF + +
Sbjct: 35 KLKQINADPKIRVVIVTGE-GRAFCVGADLSE---FAPD---FAID-LRETFYPIIREIR 86
Query: 67 IPT---IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG 123
I+ I+G G + +AL+ D + L + G L +L G
Sbjct: 87 FSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG 146
Query: 124 KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169
+ +I+ G + + ++A GL+ + A E+A I+
Sbjct: 147 QR-FYEILVLGGEFTAEEAERWGLLKI---SEDPLSDAEEMANRIS 188
|
Length = 248 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 61 FLEALPI---PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
FL AL P ++ +DG A+G G + L CDL +L P LA++P AG +
Sbjct: 89 FLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLL 148
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 177
PRL+G A ++ G S + A GL+ V + + L+ A+E+ K +
Sbjct: 149 APRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ 208
Query: 178 I 178
I
Sbjct: 209 I 209
|
Length = 251 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 66 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKS 125
P IA + G +GG + AL D+ I + A++G P + + GA T + +
Sbjct: 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTP---YSRMWGAYLTGMWLYRLSLA 168
Query: 126 VAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 170
K TGR ++G A L+N VP + + + E+A E+ +
Sbjct: 169 KVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELAR 213
|
Length = 298 |
| >gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 19/175 (10%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M+ L A + +D + V++ + P +F G DLK + L + +
Sbjct: 30 MIDALNAALDQAEDDRA---VVVITGQPGIFSGGFDLKVM-TSGAQAA---IALLTAGST 82
Query: 61 FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAAL-LGLPETGLAI-IPGAG-- 113
L P P I G A+ G + L+ D RI +GL E + + +P A
Sbjct: 83 LARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIE 142
Query: 114 -GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 167
RL S + + ++A++ G ++ VP Q +A A+E
Sbjct: 143 LARDRLTP----SAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARE 193
|
Length = 229 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 180 | |||
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 99.98 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.97 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.91 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.88 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.8 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.73 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.72 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.72 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.72 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.69 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.67 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.61 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.5 | |
| PRK10949 | 618 | protease 4; Provisional | 99.3 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 99.25 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 99.21 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 99.12 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 99.02 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.98 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 98.95 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.95 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.93 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.88 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.87 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.81 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 98.78 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 98.77 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 98.77 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.77 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 98.71 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.69 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.67 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.66 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 98.65 | |
| PRK10949 | 618 | protease 4; Provisional | 98.63 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.61 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.58 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 98.58 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.51 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 98.39 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 98.34 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 98.29 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 98.26 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 98.22 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 98.22 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 98.16 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 97.97 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.89 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 97.86 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 97.86 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.77 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.76 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.32 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 97.29 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 96.99 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 96.65 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 96.31 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 94.79 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 93.98 | |
| PF02601 | 319 | Exonuc_VII_L: Exonuclease VII, large subunit; Inte | 91.83 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 91.75 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 88.65 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 88.19 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 88.09 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 86.85 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 85.56 | |
| PF13607 | 138 | Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin | 84.79 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 83.66 | |
| smart00250 | 38 | PLEC Plectin repeat. | 83.24 | |
| PLN02522 | 608 | ATP citrate (pro-S)-lyase | 81.27 | |
| PF00549 | 153 | Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e | 80.86 |
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=294.73 Aligned_cols=180 Identities=72% Similarity=1.126 Sum_probs=166.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++..........+...++.++.++.++||||||+|||+|+|+
T Consensus 23 ~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 102 (251)
T PLN02600 23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGG 102 (251)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecch
Confidence 67899999999999999999999998678999999999876543333444556667788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 103 G~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~ 182 (251)
T PLN02600 103 GLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEK 182 (251)
T ss_pred hHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 183 a~~~a~~la~~~p~a~~~~K 202 (251)
T PLN02600 183 ALELAQEINQKGPLAIKMAK 202 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=294.35 Aligned_cols=179 Identities=30% Similarity=0.525 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++...+......+...++.++..+.++||||||+|||+|+|+
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (256)
T PRK06143 35 VILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG 114 (256)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence 57899999999999999999999998557999999999876543333344556667888999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|+ |+.++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 115 G~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (256)
T PRK06143 115 GLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAA 193 (256)
T ss_pred hHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHH
Confidence 9999999999999999999999999998 778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (256)
T PRK06143 194 VERLAASLAGCGPQALRQQK 213 (256)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=293.98 Aligned_cols=180 Identities=36% Similarity=0.534 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++...+......+...+.+++.++.++||||||+|||+|+|+
T Consensus 30 ~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T PRK09076 30 SLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGG 109 (258)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence 57899999999999999999999998558999999999875433322233445566788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 189 (258)
T PRK09076 110 GLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREA 189 (258)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 190 a~~~a~~l~~~~~~a~~~~K 209 (258)
T PRK09076 190 ALALAQKVANQSPSAVAACK 209 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=287.57 Aligned_cols=179 Identities=28% Similarity=0.449 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++............+.+++++.++.++||||||+|||+|+|+
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~Gg 113 (222)
T PRK05869 35 VYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGA 113 (222)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecH
Confidence 57899999999999999999999998 78999999999875543322223344567788999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+.+++.++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 114 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (222)
T PRK05869 114 GLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDA 193 (222)
T ss_pred HHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 194 a~~~a~~ia~~~~~a~~~~K 213 (222)
T PRK05869 194 AAAWARRFLDGPPHALAAAK 213 (222)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=293.14 Aligned_cols=180 Identities=49% Similarity=0.802 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++..........+...+++++..+.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK07657 32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGG 111 (260)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeech
Confidence 67899999999999999999999998557999999999875433333444455667888899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 112 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK07657 112 GLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEK 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 192 a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07657 192 AIEIAEKIASNGPIAVRQAK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=293.46 Aligned_cols=180 Identities=33% Similarity=0.512 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++.... ......+.+.++.++.++.++||||||+|||+
T Consensus 31 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (260)
T PRK05980 31 LIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGL 110 (260)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998558999999999875421 11233445555678888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|+++
T Consensus 111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 190 (260)
T PRK05980 111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEE 190 (260)
T ss_pred EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 191 l~~~a~~~a~~la~~~p~a~~~~K 214 (260)
T PRK05980 191 LLPAARALARRIIRHSPVAVAAIL 214 (260)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999988765
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-46 Score=289.81 Aligned_cols=180 Identities=37% Similarity=0.598 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..........+....++++.++.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK05809 32 TLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG 111 (260)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence 57899999999999999999999998548999999999876543333333444556788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+.+++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 112 G~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK05809 112 GCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEE 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 192 a~~~a~~la~~~~~a~~~~K 211 (260)
T PRK05809 192 AKALANKIAANAPIAVKLCK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-46 Score=289.21 Aligned_cols=177 Identities=34% Similarity=0.580 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++ +++++|||||. |++||+|.|++++...+..........++.++.++.++||||||+|||+|+|+
T Consensus 30 ~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 106 (255)
T PRK08150 30 LIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGG 106 (255)
T ss_pred HHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcH
Confidence 5789999999987 79999999998 78999999999876433322233345567788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 186 (255)
T PRK08150 107 GLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDK 186 (255)
T ss_pred HHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK08150 187 AMELARRIAQNAPLTNFAVL 206 (255)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998776
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=292.27 Aligned_cols=179 Identities=29% Similarity=0.432 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh---h-HHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP---S-EIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... . ........++.++..+.++||||||+|||+
T Consensus 36 m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (275)
T PRK09120 36 LNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGW 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998 789999999998643211 1 122223344667888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++|||++++|+++
T Consensus 115 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 115 CFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred EechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++++.+++++|+++||.+++.+|
T Consensus 195 l~~~a~~~a~~la~~~p~a~~~~K 218 (275)
T PRK09120 195 LRARTRELAAKLLEKNPVVLRAAK 218 (275)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999876
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-46 Score=291.20 Aligned_cols=179 Identities=28% Similarity=0.355 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh--hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... .........+.+++..+.++||||||+|||+|+
T Consensus 40 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 118 (268)
T PRK07327 40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAV 118 (268)
T ss_pred HHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence 57899999999999999999999998 689999999998754221 222333445567888899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+.++++++++++|..++++++++|++++|+||+++|||++++|++++.
T Consensus 119 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (268)
T PRK07327 119 GAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELL 198 (268)
T ss_pred ehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 199 ~~a~~~a~~la~~~~~a~~~~K 220 (268)
T PRK07327 199 PKALEVAERLAAGSQTAIRWTK 220 (268)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999876
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=289.48 Aligned_cols=179 Identities=27% Similarity=0.401 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++...... .......++.++..+.++||||||+|||+|+|+
T Consensus 30 ~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (256)
T TIGR03210 30 TCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDG-RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGG 108 (256)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccc-hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehh
Confidence 6789999999999999999999999855899999999987432111 111223456788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 109 G~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (256)
T TIGR03210 109 GNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAE 188 (256)
T ss_pred hHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHH
Confidence 99999999999999999999999999999888788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 189 a~~~a~~ia~~~~~a~~~~K 208 (256)
T TIGR03210 189 VQKWCDEIVEKSPTAIAIAK 208 (256)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998877
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=289.52 Aligned_cols=180 Identities=33% Similarity=0.501 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++..... .....+.+.++.++.++.++||||||+|||+|+|
T Consensus 36 ~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 115 (262)
T PRK06144 36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVG 115 (262)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeee
Confidence 578999999999999999999999985589999999998754322 2222334456778888999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCcccc-ccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETG-LAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~-~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
+|++|+++||+||++++++|++||.+ +|++|+++.++++++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 116 gG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 195 (262)
T PRK06144 116 GGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALD 195 (262)
T ss_pred hHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++++++++||.+++.+|
T Consensus 196 ~~a~~~a~~i~~~~~~a~~~~K 217 (262)
T PRK06144 196 ARADALAELLAAHAPLTLRATK 217 (262)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=289.65 Aligned_cols=180 Identities=29% Similarity=0.500 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++.... ......+....+.++..+..+||||||+|||+|+
T Consensus 39 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 118 (269)
T PRK06127 39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCI 118 (269)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 67899999999999999999999998558999999999875421 1222334455567788899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.
T Consensus 119 GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (269)
T PRK06127 119 GGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198 (269)
T ss_pred cHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 199 ~~a~~~a~~l~~~~~~a~~~~K 220 (269)
T PRK06127 199 TALADYAATIAGNAPLTLRAAK 220 (269)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=287.87 Aligned_cols=177 Identities=34% Similarity=0.547 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++...+..+ .+...+..++.++.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kpvIaav~G~a~Gg 108 (257)
T PRK05862 32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFMD--VYKGDYITNWEKVARIRKPVIAAVAGYALGG 108 (257)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchhH--HHHHHHHHHHHHHHhCCCCEEEEEccEEeHH
Confidence 57899999999999999999999998 78999999999875432211 1223445577889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (257)
T PRK05862 109 GCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDE 188 (257)
T ss_pred HHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 189 a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK05862 189 ALAAATTIASFSLPAVMMAK 208 (257)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=287.98 Aligned_cols=179 Identities=38% Similarity=0.618 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||+|. |++||+|.|++++..... .....+....+.++.++.++||||||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~G 107 (257)
T PRK07658 29 VLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALG 107 (257)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeee
Confidence 57899999999999999999999998 789999999998754322 2233344556778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.+
T Consensus 108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 187 (257)
T PRK07658 108 GGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLD 187 (257)
T ss_pred HHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 188 ~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK07658 188 DAKKLAKKIAGKSPATTRAVL 208 (257)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=287.90 Aligned_cols=177 Identities=33% Similarity=0.467 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++......... ...+++++..+.++|||+||+|||+|+|+
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~--~~~~~~~~~~i~~~~kPvIAaV~G~a~Gg 108 (258)
T PRK06190 32 LRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYGA--QDALPNPSPAWPAMRKPVIGAINGAAVTG 108 (258)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhhH--HHHHHHHHHHHHhCCCCEEEEECCEeecH
Confidence 67899999999999999999999998 7999999999987543222111 23456788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 188 (258)
T PRK06190 109 GLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPR 188 (258)
T ss_pred HHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (258)
T PRK06190 189 ARRLAASIAGNNPAAVRALK 208 (258)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=288.04 Aligned_cols=180 Identities=28% Similarity=0.473 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++..... .........+..++..+.++||||||+|||+|+|
T Consensus 31 ~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 110 (259)
T TIGR01929 31 TVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIG 110 (259)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEeh
Confidence 578999999999999999999999985489999999987642211 1111111123467788999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.+
T Consensus 111 gG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 190 (259)
T TIGR01929 111 GGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEK 190 (259)
T ss_pred HHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 191 ~a~~~a~~la~~~~~a~~~~K 211 (259)
T TIGR01929 191 ETVRWCREILQKSPMAIRMLK 211 (259)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999887
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=289.31 Aligned_cols=179 Identities=31% Similarity=0.518 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC------hhHH-HHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS------PSEI-HFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+++++|||+|. |++||+|.|++++.... .... ..+...+..++.++.++||||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK09245 32 AVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57899999999999999999999998 79999999999875321 1111 2223345667888999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|
T Consensus 111 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK09245 111 NGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190 (266)
T ss_pred CCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++++++++.+++++++++||.+++.+|
T Consensus 191 ~~~l~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK09245 191 ADQLLPAARALAERIAANPPHALRLTK 217 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999876
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=285.50 Aligned_cols=177 Identities=41% Similarity=0.682 Sum_probs=160.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.+++..++.|++++++||||. ++.||+|.|++++.....++.. ...+.+.+..+.+.+||+||++||+|+||
T Consensus 65 ~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgG 141 (290)
T KOG1680|consen 65 TMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDEFQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGG 141 (290)
T ss_pred HHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhccccccc--cccccchhhhhhhcccceeEeeeceeecc
Confidence 57899999999999999999999999 7999999999998764332211 11223445555589999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+|||.++++|++++.++|++|.+|++.+|+|.+|.++|+++++||++++++||+++|||++|+|.+++..+
T Consensus 142 G~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~e 221 (290)
T KOG1680|consen 142 GLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGE 221 (290)
T ss_pred chhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
|.+++++|+++||.++++.|
T Consensus 222 Av~l~~~Ia~~~~~~v~~~K 241 (290)
T KOG1680|consen 222 AVKLAEQIAKNSPLVVRADK 241 (290)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=288.16 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHH-HHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF-SFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++..........+.....+.+ ..+.++||||||+|||+|+|
T Consensus 27 ~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK06563 27 MLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLT 105 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeec
Confidence 57899999999999999999999998 78999999999875421111111111222223 35789999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|.+++++++++++|..++++++++|++++++||+++||||+++|++++.+
T Consensus 106 gG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 185 (255)
T PRK06563 106 LGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLE 185 (255)
T ss_pred HHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 186 ~a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK06563 186 RAIELAERIARAAPLGVQATL 206 (255)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999998876
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=289.61 Aligned_cols=179 Identities=26% Similarity=0.422 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-----------hhHHHHHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-----------PSEIHFYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++.... ..........+++++..+..+||||
T Consensus 34 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpv 112 (272)
T PRK06142 34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPV 112 (272)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999998 78999999999874310 1122233445567888899999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 149 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~ 149 (180)
||+|||+|+|+|++|+++||+||++++++|++||.++|++|+.|+++++++++|..++++++++|++++|+||+++||||
T Consensus 113 IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~ 192 (272)
T PRK06142 113 IAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVN 192 (272)
T ss_pred EEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC-chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 150 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 150 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++|+ +++.+++.++++++++.||.+++.+|
T Consensus 193 ~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K 224 (272)
T PRK06142 193 RVYDDADALLAAAHATAREIAAKSPLAVRGTK 224 (272)
T ss_pred EecCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99996 88999999999999999999999876
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=286.73 Aligned_cols=178 Identities=23% Similarity=0.358 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++....... ..+...+++++.++.++||||||+|||+|+|+
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 111 (251)
T PRK06023 34 MYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMGG-TSFGSEILDFLIALAEAEKPIVSGVDGLAIGI 111 (251)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhccccc-hhhHHHHHHHHHHHHhCCCCEEEEeCCceecH
Confidence 67899999999999999999999998 78999999999875422111 11233456778899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++++++||+||++++++|++||.++|++|+++.++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 112 G~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (251)
T PRK06023 112 GTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191 (251)
T ss_pred HHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 192 a~~~a~~l~~~~~~a~~~~K 211 (251)
T PRK06023 192 TLKAAEELAAKPPQALQIAR 211 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=286.46 Aligned_cols=177 Identities=37% Similarity=0.582 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++...+.. .........++..+..+||||||+|||+|+|+
T Consensus 30 ~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 106 (255)
T PRK09674 30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGA 106 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence 57899999999999999999999998 7999999999987543221 11223345678889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~ 186 (255)
T PRK09674 107 GCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLER 186 (255)
T ss_pred HHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 187 a~~~a~~l~~~~~~a~~~~K 206 (255)
T PRK09674 187 ALQLASKIARHSPLALRAAK 206 (255)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=286.90 Aligned_cols=177 Identities=36% Similarity=0.579 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.+++|+++++|||||. +++||+|.|++++...+. ...+.+.+++++..+.++||||||+|||+|+|+
T Consensus 36 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 112 (261)
T PRK08138 36 VRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGG 112 (261)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcH
Confidence 57899999999999999999999998 789999999998754322 122334556788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 113 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 192 (261)
T PRK08138 113 GCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPR 192 (261)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 193 a~~~a~~l~~~~~~a~~~~K 212 (261)
T PRK08138 193 ALELAREIARMPPLALAQIK 212 (261)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=287.11 Aligned_cols=179 Identities=30% Similarity=0.498 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++....... ..+.......+.++..+||||||+|||+|+|+
T Consensus 30 ~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (261)
T PRK03580 30 TSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGG 108 (261)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999998558999999999875432211 11112223456788999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (261)
T PRK03580 109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188 (261)
T ss_pred HHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (261)
T PRK03580 189 ARELAQQLVNSAPLAIAALK 208 (261)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=286.75 Aligned_cols=179 Identities=27% Similarity=0.467 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||+|. +++||+|.|++++... +......+...+++++..+.++||||||+|||+|
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a 109 (260)
T PRK07511 31 MYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAA 109 (260)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 67899999999999999999999998 7899999999987542 1222334456677888999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (260)
T PRK07511 110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQA 189 (260)
T ss_pred ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++++|.++..+|
T Consensus 190 ~~~a~~~a~~l~~~~~~~~~~~K 212 (260)
T PRK07511 190 LAEALALADQLAAGSPNALARIK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=288.79 Aligned_cols=179 Identities=30% Similarity=0.513 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-----------hHHHHHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++..... .....+...+++++..+.++||||
T Consensus 36 ~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 114 (275)
T PLN02664 36 FFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPV 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999998 789999999998754211 112223345567788899999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 149 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~ 149 (180)
||+|||+|+|+|++|+++||+||++++++|++||+++|+.|+.|+++++++++|..++++++++|++++++||+++||||
T Consensus 115 Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~ 194 (275)
T PLN02664 115 IAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194 (275)
T ss_pred EEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC-chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 150 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 150 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++|+ +++.+++.++++++++.+|.+++.+|
T Consensus 195 ~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K 226 (275)
T PLN02664 195 RVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTK 226 (275)
T ss_pred eeeCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99995 88999999999999999999999876
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=285.22 Aligned_cols=178 Identities=29% Similarity=0.481 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh--hHH-HHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SEI-HFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.+++|+ +++|||||. +++||+|.|++++..... .+. ..+...+..++.++..+||||||+|||+|
T Consensus 27 ~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 104 (256)
T TIGR02280 27 MHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVA 104 (256)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 5789999999999998 999999998 789999999998754221 111 11222335577889999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 184 (256)
T TIGR02280 105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAAL 184 (256)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.||.+++.+|
T Consensus 185 ~~~a~~~a~~la~~~~~~~~~~K 207 (256)
T TIGR02280 185 MDEAQALAVHLAAQPTRGLALTK 207 (256)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=285.90 Aligned_cols=179 Identities=43% Similarity=0.717 Sum_probs=170.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++|+.++.|+++++||++|. +++||+|.|++++.....+....+.+.+++++.++..+||||||++||+|+|+
T Consensus 26 ~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~Gg 104 (245)
T PF00378_consen 26 MLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGG 104 (245)
T ss_dssp HHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETH
T ss_pred HHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccccc
Confidence 57899999999999999999999997 89999999999988775566777888999999999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++++++||+||++++++|++||+++|++|++++++++++++|.+.+++++++|++++|+||+++||||+++|++++.++
T Consensus 105 G~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 184 (245)
T PF00378_consen 105 GFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEE 184 (245)
T ss_dssp HHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHH
T ss_pred ccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++..||.+++.+|
T Consensus 185 a~~~a~~l~~~~~~a~~~~K 204 (245)
T PF00378_consen 185 ALELAKRLAAKPPSALRATK 204 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999876
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-45 Score=285.03 Aligned_cols=178 Identities=29% Similarity=0.448 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... .....+.+.+.+++.++.++||||||+|||+|+|
T Consensus 39 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 117 (266)
T PRK08139 39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATA 117 (266)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeH
Confidence 57899999999999999999999998 789999999998754322 2223344556678889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++ ++++++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 118 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 196 (266)
T PRK08139 118 AGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDA 196 (266)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHH
Confidence 9999999999999999999999999999998765 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 197 ~a~~~a~~la~~~~~a~~~~K 217 (266)
T PRK08139 197 AVARLAAVIAAKSPAAVRIGK 217 (266)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=284.81 Aligned_cols=177 Identities=29% Similarity=0.432 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++..............+.+.+..+.++||||||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 109 (249)
T PRK05870 31 MSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGA 109 (249)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEch
Confidence 57899999999999999999999998 78999999999876532222223344556677889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++.++++++++|+.++++++++|++++++||+++||||+++ +++.++
T Consensus 110 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~ 187 (249)
T PRK05870 110 GLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAA 187 (249)
T ss_pred hHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 689999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (249)
T PRK05870 188 ALELAAGPAAAPRELVLATK 207 (249)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=287.12 Aligned_cols=179 Identities=30% Similarity=0.419 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-------hhHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------PSEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++.... ..........+++++..+.++||||||+|
T Consensus 38 ~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 116 (276)
T PRK05864 38 VMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV 116 (276)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999999999998 78999999999864311 11111223455677888999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccC-CcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceec
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 152 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~ 152 (180)
||+|+|+|++|+++||+||++++++|++||+++|++| +.|.++++++++|..++++++++|++++|+||+++|||++++
T Consensus 117 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv 196 (276)
T PRK05864 117 NGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQV 196 (276)
T ss_pred CCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceee
Confidence 9999999999999999999999999999999999997 688889999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 153 PAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 153 ~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|++++.+++.+++++|+.+||.+++.+|
T Consensus 197 ~~~~l~~~a~~~a~~la~~~p~a~~~~K 224 (276)
T PRK05864 197 PDEQLLDTCYAIAARMAGFSRPGIELTK 224 (276)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999998876
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=284.77 Aligned_cols=178 Identities=28% Similarity=0.461 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC---hhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---PSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.+++++++ |+++++|||||. |++||+|.|++++.... ... ...+...+..++..+.++||||||+|||+
T Consensus 32 ~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 109 (262)
T PRK08140 32 MHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGV 109 (262)
T ss_pred HHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 5789999999999 999999999998 78999999999874322 111 11122234457788999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|+++
T Consensus 110 a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 189 (262)
T PRK08140 110 AAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAA 189 (262)
T ss_pred eehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.+++++++++||.+++.+|
T Consensus 190 l~~~a~~~a~~ia~~~~~a~~~~K 213 (262)
T PRK08140 190 LADEAQQLAAHLATQPTRGLALIK 213 (262)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=284.68 Aligned_cols=177 Identities=33% Similarity=0.487 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++......... ...+..+. .+.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~--~~~~~~~~-~~~~~~kPvIaav~G~a~Gg 108 (259)
T PRK06494 32 AHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWP--ESGFGGLT-SRFDLDKPIIAAVNGVAMGG 108 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhh--hHHHHHHH-HHhcCCCCEEEEECCEEecH
Confidence 5789999999999999999999999855899999999987543221111 11223333 34589999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 109 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~ 188 (259)
T PRK06494 109 GFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAA 188 (259)
T ss_pred HHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (259)
T PRK06494 189 AERWADDILACSPLSIRASK 208 (259)
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999876
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=285.42 Aligned_cols=178 Identities=28% Similarity=0.452 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++... ...........+++++..+.++||||||+|||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK05995 32 VIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDA 110 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 57899999999999999999999998 6899999999987432 1111222234556788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++.. ++++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 189 (262)
T PRK05995 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEAL 189 (262)
T ss_pred EhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHH
Confidence 99999999999999999999999999999999988765 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.||.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (262)
T PRK05995 190 DAKVDELLAALVANSPQAVRAGK 212 (262)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=286.90 Aligned_cols=178 Identities=26% Similarity=0.383 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh---hHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++..... .........+++++..+.++||||||+|||+|
T Consensus 34 ~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a 112 (265)
T PRK05674 34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAA 112 (265)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence 67899999999999999999999998 689999999998643211 11112233456788889999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++.. ++++++|..++++++++|++++|+||+++|||++++|++++
T Consensus 113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 191 (265)
T PRK05674 113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAEL 191 (265)
T ss_pred EechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHH
Confidence 99999999999999999999999999999999987655 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.+++++++++||.+++.+|
T Consensus 192 ~~~a~~~a~~la~~~p~a~~~~K 214 (265)
T PRK05674 192 EAQVEAWIANLLLNSPQALRASK 214 (265)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999876
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=284.16 Aligned_cols=179 Identities=22% Similarity=0.366 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-h---hHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-P---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++.... . .....+.+.+++++.++.++||||||+|||+
T Consensus 30 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (255)
T PRK07260 30 MCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGA 108 (255)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCe
Confidence 67899999999999999999999998 78999999999875321 1 1122234455678889999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||.++|++|+.++++++++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 109 a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~ 188 (255)
T PRK07260 109 VAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188 (255)
T ss_pred eehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K 212 (255)
T PRK07260 189 LEKTCEQLLKKLRRGSSNSYAAIK 212 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999877
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=286.26 Aligned_cols=179 Identities=22% Similarity=0.370 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC----ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... +......+.+.+++++..+.++||||||+|||+
T Consensus 45 ~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 123 (277)
T PRK08258 45 SYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGV 123 (277)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 57899999999999999999999998 7899999999987431 112233344555678889999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccC-CcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
|+|+|++|+++||+||++++++|++||.++|++| ++|.++++++++|..++++++++|++++|+||+++||||+++|++
T Consensus 124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 124 CAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred eehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 9999999999999999999999999999999995 678899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.+++++++++||.+++.+|
T Consensus 204 ~l~~~a~~~a~~la~~~~~a~~~~K 228 (277)
T PRK08258 204 ELLAEAQALARRLAAGPTFAHGMTK 228 (277)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999876
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=285.92 Aligned_cols=179 Identities=27% Similarity=0.474 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++.... ........ ....++..+.++||||||+|||+|+
T Consensus 41 ~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T PRK07396 41 TVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVLDLQRLIRTCPKPVIAMVAGYAI 119 (273)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHHHHHHHHHhCCCCEEEEECCEEe
Confidence 67899999999999999999999998547999999999864321 11111111 2345677889999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+++++.++++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~ 199 (273)
T PRK07396 120 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLE 199 (273)
T ss_pred hHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++++|.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (273)
T PRK07396 200 KETVRWCREMLQNSPMALRCLK 221 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=284.68 Aligned_cols=178 Identities=32% Similarity=0.553 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++....... ..+...+++++.++.++|||+||+|||+|+|+
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~Gg 110 (259)
T PRK06688 33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGV 110 (259)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecH
Confidence 57899999999999999999999998 69999999999876533222 33455667888899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 111 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 190 (259)
T PRK06688 111 GVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAE 190 (259)
T ss_pred HHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 191 a~~~a~~i~~~~~~a~~~~K 210 (259)
T PRK06688 191 ADAQAAKLAAGPASALRYTK 210 (259)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998776
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=284.23 Aligned_cols=176 Identities=28% Similarity=0.453 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++........ .....+++..+.++||||||+|||+|+|+
T Consensus 38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 38 MMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 67899999999999999999999998 689999999987643111111 11234567778999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 114 G~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (265)
T PLN02888 114 GFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKK 193 (265)
T ss_pred HHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (265)
T PLN02888 194 AREVAEAIIKNNQGMVLRYK 213 (265)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=287.49 Aligned_cols=179 Identities=28% Similarity=0.390 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---C-------------hh-HHHHHHHHHHHHHHHHh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---S-------------PS-EIHFYVNTLRSTFSFLE 63 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~-------------~~-~~~~~~~~~~~~~~~~~ 63 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... . .. ....+.+..+.++..+.
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (296)
T PRK08260 32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF 110 (296)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998 7999999999986420 0 00 11122333456788899
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~ 143 (180)
.+||||||+|||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+
T Consensus 111 ~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~ 190 (296)
T PRK08260 111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEAL 190 (296)
T ss_pred hCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccceecCCchHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030277 144 SLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL 180 (180)
Q Consensus 144 ~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 180 (180)
++||||+++|++++.+++.+++++++++ +|.+++.+|
T Consensus 191 ~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K 228 (296)
T PRK08260 191 DGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTR 228 (296)
T ss_pred HCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999999999999999999995 999998876
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=283.13 Aligned_cols=178 Identities=22% Similarity=0.454 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+ +++|||||.+ +++||+|.|++++.....+ ...+.+.+++++..+..+||||||+|||+|+|
T Consensus 32 ~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~G 109 (261)
T PRK11423 32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWG 109 (261)
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-HHHHHHHHHHHHHHHHhCCCCEEEEEecEEec
Confidence 5789999999999887 9999999963 5899999999987432211 12334456778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++|+||+++||||+++|++++++
T Consensus 110 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~ 189 (261)
T PRK11423 110 GAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELED 189 (261)
T ss_pred hHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++++|.+++.+|
T Consensus 190 ~a~~~a~~l~~~~~~a~~~~K 210 (261)
T PRK11423 190 FTLQMAHHISEKAPLAIAVIK 210 (261)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999998876
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=280.69 Aligned_cols=176 Identities=25% Similarity=0.443 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++....... ..+. . ++++..+.++||||||+|||+|+|+
T Consensus 33 ~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~-~-~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 33 LCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhHh-h-HHHHHHHHcCCCCEEEEecCceech
Confidence 57899999999999999999999998 78999999999875433221 1122 2 5678889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+.+.++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (249)
T PRK07110 109 GLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEK 188 (249)
T ss_pred HHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (249)
T PRK07110 189 ALELARSLAEKPRHSLVLLK 208 (249)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998877
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=283.20 Aligned_cols=178 Identities=32% Similarity=0.536 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-HHH-H-H-HHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIH-F-Y-VNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-~~~-~-~-~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++...... ... . + ...+..+ .++..+||||||+|||+
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~ 110 (263)
T PRK07799 33 MLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDAL-LKGRRLTKPLIAAVEGP 110 (263)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhHHHHH-HHHhcCCCCEEEEECCe
Confidence 67899999999999999999999998 6899999999987643221 111 0 1 1122223 34789999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|.++++++|++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 111 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 111 AIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred EeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.||.+++.+|
T Consensus 191 l~~~a~~~a~~~~~~~~~a~~~~K 214 (263)
T PRK07799 191 ALDKALELAELINANGPLAVQAIL 214 (263)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999998876
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=281.95 Aligned_cols=178 Identities=26% Similarity=0.392 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++... ...........++.++..+..+||||||+|||+|
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (262)
T PRK07468 33 MIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQA 111 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 67899999999999999999999998 7899999999986431 1111122234456788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||.++|++|++++++++ +++|..++++++++|++++++||+++||||+++|++++
T Consensus 112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l 190 (262)
T PRK07468 112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERL 190 (262)
T ss_pred EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence 99999999999999999999999999999999999888755 55999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 191 ~~~~~~~a~~l~~~~~~a~~~~K 213 (262)
T PRK07468 191 DAAVEAEVTPYLSCAPGAVAAAK 213 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999998876
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=282.83 Aligned_cols=179 Identities=27% Similarity=0.471 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHhhcCC-CceEEEEEeCCCCceEecCCccccccCCh------hHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDS-SANVVMIRSSVPKVFCAGADLKERRQMSP------SEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~-~v~~vvl~g~~~~~F~~G~D~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+ ++++|||||. +++||+|.|++++..... .....+...++.++.++.++||||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK05981 32 MLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6789999999999876 4999999998 689999999998754221 1122233456778889999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|...+++++++|++++++||+++||||+++|
T Consensus 111 ~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK05981 111 NGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVD 190 (266)
T ss_pred CCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++++.+++.++++++++.||.+++.+|
T Consensus 191 ~~~~~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK05981 191 DAELMAEAMKLAHELANGPTVALGLIR 217 (266)
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999998876
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=280.53 Aligned_cols=175 Identities=32% Similarity=0.484 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++...+.... ....+..++. ..+||||||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~~~--~~~~kPvIaav~G~a~Gg 105 (254)
T PRK08252 31 VAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPSI--PGRGFGGLTE--RPPRKPLIAAVEGYALAG 105 (254)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchhh--hHHHHHHHHH--hcCCCCEEEEECCEEehH
Confidence 67899999999999999999999998 789999999998764321111 1112222221 469999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 106 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 185 (254)
T PRK08252 106 GFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDA 185 (254)
T ss_pred HHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 186 a~~~a~~l~~~~~~a~~~~K 205 (254)
T PRK08252 186 ALELAERIAANGPLAVAASK 205 (254)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=280.89 Aligned_cols=177 Identities=37% Similarity=0.524 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.......... .....+...+.++||||||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIaav~G~a~Gg 107 (254)
T PRK08259 31 TAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMGPSRMRLSKPVIAAVSGYAVAG 107 (254)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhhhHHhcCCCCEEEEECCEEEhH
Confidence 67899999999999999999999998 78999999999875432211110 0011112233579999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|.++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 187 (254)
T PRK08259 108 GLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAA 187 (254)
T ss_pred HHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (254)
T PRK08259 188 AEELAAELAAFPQTCLRADR 207 (254)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999877
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=280.02 Aligned_cols=178 Identities=40% Similarity=0.659 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCcccccc-CChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.. ........+....+.++.++.++||||||+|||+|+|
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (257)
T COG1024 33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALG 111 (257)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEee
Confidence 67899999999999999999999999 599999999999874 2222233556667789999999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC-chHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-GQAQ 158 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~-~~~~ 158 (180)
||++|+++||+||++++++|++||+++|++|++|++++++|++|..+++++++||++++++||+++|||++++++ +++.
T Consensus 112 gG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~ 191 (257)
T COG1024 112 GGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191 (257)
T ss_pred chhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHH
Confidence 999999999999999999999999999999987999999999999999999999999999999999999999986 7999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++. +|.++..+|
T Consensus 192 ~~a~~~a~~~a~-~~~a~~~~k 212 (257)
T COG1024 192 ERALELARRLAA-PPLALAATK 212 (257)
T ss_pred HHHHHHHHHHcc-CHHHHHHHH
Confidence 999999999998 888887765
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=280.59 Aligned_cols=177 Identities=33% Similarity=0.457 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.+ .|+++++|||+|. +++||+|.|++++.... ......+...+++++..+..+||||||+|||+|+|
T Consensus 34 ~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~G 111 (260)
T PRK07659 34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAG 111 (260)
T ss_pred HHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceec
Confidence 578999999999 5899999999998 78999999999875432 22334445666788889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|+.++++++++|++++|+||+++||||+++ ++++.+
T Consensus 112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~ 190 (260)
T PRK07659 112 LGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQT 190 (260)
T ss_pred HHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++++++++||.+++.+|
T Consensus 191 ~a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07659 191 AAKQKISEWLQKPLKAMIETK 211 (260)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=278.19 Aligned_cols=176 Identities=27% Similarity=0.407 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++..... .......+.+++++..+.++||||||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G 107 (249)
T PRK07938 29 GWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLG 107 (249)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEee
Confidence 67899999999999999999999998 789999999998754321 2222223445677888999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++ ++++++++++|..++++++++|++++++||+++|||++++|++++++
T Consensus 108 gG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 184 (249)
T PRK07938 108 GGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDE 184 (249)
T ss_pred hHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHH
Confidence 999999999999999999999999999986 34668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++++|.+++.+|
T Consensus 185 ~a~~~a~~la~~~~~a~~~~K 205 (249)
T PRK07938 185 AALEVARKIAAKDTRVIRAAK 205 (249)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=286.45 Aligned_cols=180 Identities=27% Similarity=0.452 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHH-HHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++............. ...+++..+.++||||||+|||+|+|
T Consensus 95 ~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~G 174 (327)
T PLN02921 95 TVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVG 174 (327)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEec
Confidence 67899999999999999999999998558999999998764321110101111 12456778899999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
||++|+++||+||++++++|++||.++|++|.+++++++++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 175 GG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~ 254 (327)
T PLN02921 175 GGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEG 254 (327)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++++|++++|.+++.+|
T Consensus 255 ~a~~~a~~la~~~p~al~~~K 275 (327)
T PLN02921 255 ETVKWCREILRNSPTAIRVLK 275 (327)
T ss_pred HHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999887
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=282.31 Aligned_cols=180 Identities=25% Similarity=0.351 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCceEecCCccccccCCh--hHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSP--SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||.+ +++||+|.|++++..... .....+....+.++.++.++||||||+|||+|
T Consensus 39 ~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 118 (278)
T PLN03214 39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGAC 118 (278)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcc
Confidence 678999999999999999999999984 279999999998753211 11223333345677889999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccc-cCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAI-IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~-~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
+|+|++|+++||+||++++++|++||+++|+ +|+.++++++++++|..++++++++|++++++||+++||||+++|+++
T Consensus 119 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~ 198 (278)
T PLN03214 119 PAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198 (278)
T ss_pred cchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence 9999999999999999999999999999999 598888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 199 l~~~a~~~a~~l~~~~~~a~~~~K 222 (278)
T PLN03214 199 LMEAAASAMERALKLPSAARAATK 222 (278)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999877
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=278.67 Aligned_cols=176 Identities=32% Similarity=0.580 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC--ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++... .......+...+++++.++.++||||||+|||+|+
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (257)
T PRK06495 31 LRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPAL 109 (257)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 67899999999999999999999998 7999999999987542 11222333445567888899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|+. +.++.+++++|..++++++++|++++++||+++||||+++|++++.
T Consensus 110 GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~ 186 (257)
T PRK06495 110 GAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELM 186 (257)
T ss_pred hhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHH
Confidence 9999999999999999999999999999996 3466799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 187 ~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK06495 187 PEAMEIAREIASKSPLATRLAK 208 (257)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=281.07 Aligned_cols=179 Identities=30% Similarity=0.504 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHH------HHH----HHHHHHHHHHHhcCCCcEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI------HFY----VNTLRSTFSFLEALPIPTI 70 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~kp~I 70 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++......+. ..+ ...+++++..+.++|||||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 112 (272)
T PRK06210 34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVI 112 (272)
T ss_pred HHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEE
Confidence 57899999999999999999999998 789999999998754221100 011 1123456778899999999
Q ss_pred EEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 71 AVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 71 a~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
|+|||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++|+||+++||||+
T Consensus 113 aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~ 192 (272)
T PRK06210 113 AAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNR 192 (272)
T ss_pred EEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030277 151 YVPAGQAQLKALEIAQEINQK-VQSVFRILL 180 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 180 (180)
++|++++.+++.++++++++. +|.++..+|
T Consensus 193 vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K 223 (272)
T PRK06210 193 VVPPDELMERTLAYAEDLARNVSPASMAVIK 223 (272)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999985 999998876
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=274.53 Aligned_cols=173 Identities=27% Similarity=0.428 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|+.++.. .........+.+++..+.++||||||+|||+|+|+
T Consensus 28 ~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~---~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (251)
T TIGR03189 28 MIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG 103 (251)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc---hhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence 67899999999999999999999998 789999999987532 11122334456788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++ +++++++++|+.++++++++|++++++||+++|||++++|+.+ ++
T Consensus 104 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~ 180 (251)
T TIGR03189 104 GLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NA 180 (251)
T ss_pred HHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HH
Confidence 99999999999999999999999999999875 5778999999999999999999999999999999999998643 56
Q ss_pred HHHH-HHHHhccCHHHHHhhC
Q 030277 161 ALEI-AQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~-a~~~~~~~~~a~~~~K 180 (180)
+.++ +++++++||.+++.+|
T Consensus 181 a~~~~a~~la~~~p~a~~~~K 201 (251)
T TIGR03189 181 ALAWFDEHPAKLSASSLRFAV 201 (251)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 6666 6899999999998876
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=276.85 Aligned_cols=171 Identities=26% Similarity=0.434 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHhhc-----CCCceEEEEEeCCCCceEecCCccccccC---Ch-hHHHHHHHHHHHHHHHHh---cCCCc
Q 030277 1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKERRQM---SP-SEIHFYVNTLRSTFSFLE---ALPIP 68 (180)
Q Consensus 1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~-~~~~~~~~~~~~~~~~~~---~~~kp 68 (180)
|+.+|.++++++++ |+++++|||||.++++||+|.|++++... .. .....+...+.+.+.++. .+|||
T Consensus 44 ~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkP 123 (287)
T PRK08788 44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAI 123 (287)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57899999999998 89999999999867899999999986431 11 111112222233333333 79999
Q ss_pred EEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 69 ~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
|||+|||+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++|||
T Consensus 124 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV 203 (287)
T PRK08788 124 SIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLV 203 (287)
T ss_pred EEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCchHHHHHHHHHHHHhcc
Q 030277 149 NYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 149 ~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
|+++|++++.+++.+++++++.+
T Consensus 204 ~~vv~~~el~~~a~~~a~~ia~~ 226 (287)
T PRK08788 204 DVLVEDGQGEAAVRTFIRKSKRK 226 (287)
T ss_pred cEecCchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999976
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=269.87 Aligned_cols=176 Identities=20% Similarity=0.246 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++ +++++||+||. +++||+|.|++++... ......+...+++++.++.++||||||++||+|+|+
T Consensus 30 ~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~Gg 105 (229)
T PRK06213 30 MIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAK 105 (229)
T ss_pred HHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHH
Confidence 5789999999988 56799999998 7999999999987543 233344556667888999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
|++|+++||+||++++ ++|++||+++|++|+.++...+++++|...+++++++|++++++||+++||||+++|++++.+
T Consensus 106 G~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~ 185 (229)
T PRK06213 106 GAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLA 185 (229)
T ss_pred HHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHH
Confidence 9999999999999999 999999999999888777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 186 ~a~~~a~~la~~~~~a~~~~K 206 (229)
T PRK06213 186 RAQAAARELAGLNMGAHAATK 206 (229)
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998877
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=275.49 Aligned_cols=177 Identities=29% Similarity=0.473 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHH---H----HHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH---F----YVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++...+..... . ....+..++..+.++||||||+|
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav 109 (262)
T PRK07509 31 MFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL 109 (262)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57899999999999999999999998 7899999999987543221111 1 11233456677889999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||++++
T Consensus 110 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 110 EGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred CCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+ +.+++.+++++++++||.++..+|
T Consensus 190 ~--~~~~a~~~a~~l~~~~~~~~~~~K 214 (262)
T PRK07509 190 D--PLAAALALAREIAQRSPDAIAAAK 214 (262)
T ss_pred h--HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3 678999999999999999998876
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=276.06 Aligned_cols=177 Identities=29% Similarity=0.447 Sum_probs=155.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-------------------h---HHHHHHHHHHHH
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-------------------S---EIHFYVNTLRST 58 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-------------------~---~~~~~~~~~~~~ 58 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++..... . ........+.++
T Consensus 32 ~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (288)
T PRK08290 32 MLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGM 110 (288)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 57899999999999999999999998 789999999998632110 0 011122345567
Q ss_pred HHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCC
Q 030277 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVS 138 (180)
Q Consensus 59 ~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~ 138 (180)
+..+.++||||||+|||+|+|+|++|+++||+||++++++|++||+++|+ |+ ..++.+++++|..+++++++||++++
T Consensus 111 ~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~llltG~~i~ 188 (288)
T PRK08290 111 CRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLFTGDRLT 188 (288)
T ss_pred HHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCC
Confidence 78899999999999999999999999999999999999999999999999 44 34667889999999999999999999
Q ss_pred HHHHHhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 139 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 139 a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|+||+++||||+++|++++++++.++++++++.||.+++.+|
T Consensus 189 A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 230 (288)
T PRK08290 189 ADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK 230 (288)
T ss_pred HHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999998876
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=276.88 Aligned_cols=180 Identities=28% Similarity=0.452 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCC------CceEecCCccccccC-------Ch-h--HHHHH-HHHHHHHHHHHh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVP------KVFCAGADLKERRQM-------SP-S--EIHFY-VNTLRSTFSFLE 63 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~------~~F~~G~D~~~~~~~-------~~-~--~~~~~-~~~~~~~~~~~~ 63 (180)
|+.+|.++++.++.|+++++|||||.|+ ++||+|.|++++... .. . ..... .....++.+.+.
T Consensus 53 ~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (302)
T PRK08321 53 TVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIR 132 (302)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999842 699999999875321 00 0 00011 111234667788
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEc-CCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~-~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
.+||||||+|||+|+|+|++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++|+||
T Consensus 133 ~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA 212 (302)
T PRK08321 133 FMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEA 212 (302)
T ss_pred cCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHH
Confidence 9999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 143 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 143 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++||||+++|++++.+++.+++++|++.+|.+++++|
T Consensus 213 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 250 (302)
T PRK08321 213 HDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLK 250 (302)
T ss_pred HHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999876
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=282.32 Aligned_cols=179 Identities=26% Similarity=0.497 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--h-hH-HHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--P-SE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++.... . .. ...+....++++.++.++||||||+|||+
T Consensus 31 m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~ 110 (342)
T PRK05617 31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGI 110 (342)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999999558999999999875421 1 11 11334444567888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++|++++|+++.| ..+++++++|++++|+||+++|||++++|+++
T Consensus 111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSAD 189 (342)
T ss_pred EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999877 68999999999999999999999999999988
Q ss_pred HHHH--------------------------------------------------------------HHHHHHHHhccCHH
Q 030277 157 AQLK--------------------------------------------------------------ALEIAQEINQKVQS 174 (180)
Q Consensus 157 ~~~~--------------------------------------------------------------a~~~a~~~~~~~~~ 174 (180)
+.+. +.+++++|++++|.
T Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~ 269 (342)
T PRK05617 190 LPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPT 269 (342)
T ss_pred HHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcH
Confidence 8776 88999999999999
Q ss_pred HHHhhC
Q 030277 175 VFRILL 180 (180)
Q Consensus 175 a~~~~K 180 (180)
+++.+|
T Consensus 270 a~~~~k 275 (342)
T PRK05617 270 SLKVTL 275 (342)
T ss_pred HHHHHH
Confidence 999876
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=271.40 Aligned_cols=176 Identities=23% Similarity=0.393 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC--ChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++... .+.. ...+...+.+++.++.++||||||+|||+|
T Consensus 34 ~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 112 (260)
T PRK07827 34 LVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHV 112 (260)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 57899999999999999999999998 7899999999987542 1111 223445567788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++++++++++. ..++++++++|++++++||+++||||++++ ++
T Consensus 113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l 189 (260)
T PRK07827 113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD--DV 189 (260)
T ss_pred ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH--HH
Confidence 999999999999999999999999999999999999999999875 568999999999999999999999999974 58
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (260)
T PRK07827 190 DAAVAALLADLRRGSPQGLAESK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999999999887
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=267.23 Aligned_cols=169 Identities=28% Similarity=0.462 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.+ ++++|||||. |++||+|.|+++... ...+.+.+..++.++.++||||||+|||+|+|+
T Consensus 28 ~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 28 LCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred HHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 578999999999855 9999999998 789999999985311 122334556788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++ + ++
T Consensus 101 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~-~~ 176 (243)
T PRK07854 101 GLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---L-AD 176 (243)
T ss_pred HHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---H-HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 3 38
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 177 a~~~a~~l~~~~~~a~~~~K 196 (243)
T PRK07854 177 AQAWAAEIAGLAPLALQHAK 196 (243)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=267.78 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++.... ...+.+.++.++..+.++||||||+|||+|+|+
T Consensus 28 ~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (248)
T PRK06072 28 MRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYPIIREIRFSDKIYISAINGVTAGA 103 (248)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999998 68999999999865321 122334556778889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+.+.++++++++|. ++++++++|++++|+||+++||||++ +++.++
T Consensus 104 G~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~ 179 (248)
T PRK06072 104 CIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSD 179 (248)
T ss_pred HHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHH
Confidence 99999999999999999999999999999999999999999996 89999999999999999999999964 467889
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 180 a~~~a~~la~~~~~a~~~~K 199 (248)
T PRK06072 180 AEEMANRISNGPFQSYIAAK 199 (248)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=274.74 Aligned_cols=176 Identities=26% Similarity=0.365 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-----------------------H--HHHHHHHH
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-----------------------E--IHFYVNTL 55 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-----------------------~--~~~~~~~~ 55 (180)
|+.+|.+++++++.|+++++|||||. +++||+|.|++++...... . .......+
T Consensus 38 m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08272 38 TPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRF 116 (302)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHHHHH
Confidence 67899999999999999999999998 7999999999987532110 0 01223455
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCC
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 135 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~ 135 (180)
++++..+.++||||||+|||+|+|+|++|+++||+||++++++|++||+++|.+|+. ..+++++|..+++++++||+
T Consensus 117 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~ 193 (302)
T PRK08272 117 VRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGD 193 (302)
T ss_pred HHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCC
Confidence 677888999999999999999999999999999999999999999999998666643 35678899999999999999
Q ss_pred CCCHHHHHhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 136 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 136 ~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++|+||+++||||+++|++++.+++.+++++|++.||.+++.+|
T Consensus 194 ~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 194 CITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred ccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999877
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=272.83 Aligned_cols=179 Identities=24% Similarity=0.339 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++... .+.....+.+.+++++..+..++|||||+|||+|
T Consensus 56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 6789999999999999999999999954799999999987542 1223344455567788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++|||++++|+.++
T Consensus 136 iGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 136 IGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ------------HHHHHHHHHHHhccCHH--HHHhh
Q 030277 158 ------------QLKALEIAQEINQKVQS--VFRIL 179 (180)
Q Consensus 158 ------------~~~a~~~a~~~~~~~~~--a~~~~ 179 (180)
++.+.++++.+..+++. +++..
T Consensus 216 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 251 (360)
T TIGR03200 216 DGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAG 251 (360)
T ss_pred CcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHH
Confidence 77788888888887776 54443
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=278.81 Aligned_cols=177 Identities=25% Similarity=0.461 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... ......+....+.+...+.++|||+||+|||+
T Consensus 65 m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~ 143 (401)
T PLN02157 65 MGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGV 143 (401)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCe
Confidence 68899999999999999999999998 68999999999875321 11122334444556778999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. .++++++||++++|+||+++||||+++|+++
T Consensus 144 a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 144 TMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred EeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhH
Confidence 999999999999999999999999999999999999999999999996 8999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+ +++.+++++++..+|.++..+|
T Consensus 223 l-~~~~~~~~~i~~~~p~av~~~k 245 (401)
T PLN02157 223 I-PVMEEQLKKLLTDDPSVVESCL 245 (401)
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHH
Confidence 8 6788999999999998887665
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=268.63 Aligned_cols=175 Identities=22% Similarity=0.289 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccc-c----C--Ch--hHHHHH---HH---HHHHHHHHHhcC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR-Q----M--SP--SEIHFY---VN---TLRSTFSFLEAL 65 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~----~--~~--~~~~~~---~~---~~~~~~~~~~~~ 65 (180)
|+.+|.++++.++.|++|++|||||. |++||+|.|+++.. . . +. .....+ .. .....+..+.++
T Consensus 33 ~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (298)
T PRK12478 33 MPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRA 111 (298)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHHHhC
Confidence 67899999999999999999999998 78999999998621 1 0 00 001111 01 112356678899
Q ss_pred CCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccc-cccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHh
Q 030277 66 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL-AIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 144 (180)
Q Consensus 66 ~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~-G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~ 144 (180)
+|||||+|||+|+|+|++|+++||+||++++++|++||+++ |+++. .++ .+++|..++++++++|++++|+||++
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~~--~~~vG~~~A~~llltg~~i~A~eA~~ 187 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GMW--LYRLSLAKVKWHSLTGRPLTGVQAAE 187 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hHH--HHHhhHHHHHHHHHcCCccCHHHHHH
Confidence 99999999999999999999999999999999999999997 88753 232 35699999999999999999999999
Q ss_pred cCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 145 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 145 ~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+|||++++|++++.+++.+++++++..||.+++.+|
T Consensus 188 ~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 223 (298)
T PRK12478 188 AELINEAVPFERLEARVAEVATELARIPLSQLQAQK 223 (298)
T ss_pred cCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999887
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=260.20 Aligned_cols=172 Identities=22% Similarity=0.397 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHhhcCCCce-EEEEEeCCCCceEecCCccccccC--ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSAN-VVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~-~vvl~g~~~~~F~~G~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|++++ +||++|. +++||+|.|++++... .......+...+++++.++.++||||||+|||+|
T Consensus 27 ~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 105 (239)
T PLN02267 27 LIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHA 105 (239)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 5789999999999999975 6667776 7899999999886432 1222233445567788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEc-CCeEEeCccccccccCCcchhhhhhhhcCHHHH-HHHHhcCCCCCHHHHHhcCccceecCC-
Q 030277 78 LGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVA-KDIIFTGRKVSGKDAMSLGLVNYYVPA- 154 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~-~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a-~~l~l~g~~~~a~ea~~~Glv~~v~~~- 154 (180)
+|+|++|+++||+||++ ++++|++||.++|+.++.+++.++++++|..++ ++++++|++++++||+++||||+++|+
T Consensus 106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~ 185 (239)
T PLN02267 106 SAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSA 185 (239)
T ss_pred hHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCH
Confidence 99999999999999998 457999999999997444457789999999999 699999999999999999999999985
Q ss_pred chHHHHHHHHHHHHhccCH
Q 030277 155 GQAQLKALEIAQEINQKVQ 173 (180)
Q Consensus 155 ~~~~~~a~~~a~~~~~~~~ 173 (180)
+++.+++.++|+++++.++
T Consensus 186 ~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 186 EETVEAAVRLGEELAARKW 204 (239)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 6899999999999998744
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=276.87 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|++|++|||||. |++||+|.|++++.... ...........+.++..+.++|||+||+|||+|+
T Consensus 39 m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~ 117 (379)
T PLN02874 39 VVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVM 117 (379)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEE
Confidence 67899999999999999999999998 68999999999875321 1122223334445677889999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|++|+++++++++|. .++++++||++++++||+++|||++++|++++.
T Consensus 118 GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 196 (379)
T PLN02874 118 GGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLP 196 (379)
T ss_pred ecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHH
Confidence 9999999999999999999999999999999999999999999885 899999999999999999999999999988776
Q ss_pred H
Q 030277 159 L 159 (180)
Q Consensus 159 ~ 159 (180)
+
T Consensus 197 ~ 197 (379)
T PLN02874 197 E 197 (379)
T ss_pred H
Confidence 5
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=263.31 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-H-HHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-E-IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++ +++++||+||. +++||+|.|++++...... . .....+.+..++.++.++||||||+|||+|+
T Consensus 32 ~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 108 (255)
T PRK07112 32 LIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVN 108 (255)
T ss_pred HHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEE
Confidence 5789999999998 46999999998 7899999999987542211 1 1111334467888899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+++ +.++++++|..++++++++|++++|+||+++||||+++|+++.
T Consensus 109 GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~- 186 (255)
T PRK07112 109 AGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT- 186 (255)
T ss_pred cchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH-
Confidence 99999999999999999999999999999999865 5679999999999999999999999999999999999987553
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+.++++++++.+|.+++.+|
T Consensus 187 -~~~~~a~~l~~~~p~a~~~~K 207 (255)
T PRK07112 187 -LLRKHLLRLRCLNKAAVARYK 207 (255)
T ss_pred -HHHHHHHHHHhCCHHHHHHHH
Confidence 578899999999999999876
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=250.69 Aligned_cols=180 Identities=54% Similarity=0.848 Sum_probs=173.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.+..|+.+++|++++.-++.||+|.|+++-.++++.+...|...++.++..+.+.|.||||++.|.+.||
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 57899999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc----h
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG----Q 156 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~----~ 156 (180)
|++++++||+|+++++++++++|.+++++|+.|++++|+|.+|.+.++++++|++.+++.||...|||+++|... .
T Consensus 139 GLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegda 218 (291)
T KOG1679|consen 139 GLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDA 218 (291)
T ss_pred chhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999754 5
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
..++++++|++|.-+.|.++++.|
T Consensus 219 a~~kal~lA~eilp~gPiavr~aK 242 (291)
T KOG1679|consen 219 AYQKALELAREILPQGPIAVRLAK 242 (291)
T ss_pred HHHHHHHHHHHhccCCchhhhHHH
Confidence 667799999999999999999876
|
|
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=254.74 Aligned_cols=179 Identities=29% Similarity=0.563 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC-----C-------hhHHHHHHHHHHHHHHHHhcCCCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-----S-------PSEIHFYVNTLRSTFSFLEALPIP 68 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~kp 68 (180)
|++|+.++++.+..||++++|||+|+ |++||+|+|+..+... . ....+.++..+|+.+..|.+||||
T Consensus 50 ~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKP 128 (292)
T KOG1681|consen 50 FWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKP 128 (292)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChh
Confidence 68999999999999999999999999 8999999998765432 1 122566778889999999999999
Q ss_pred EEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC-HHHHHHHHhcCCCCCHHHHHhcCc
Q 030277 69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGL 147 (180)
Q Consensus 69 ~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g-~~~a~~l~l~g~~~~a~ea~~~Gl 147 (180)
+|++++|+|+|+|+.|..+||+|++++|+.|+.-|+.+|+..+.|...+|++.+| .+.++++.+|+++|+|.||++.||
T Consensus 129 VIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GL 208 (292)
T KOG1681|consen 129 VIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGL 208 (292)
T ss_pred HHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred cceecCC-chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 148 VNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 148 v~~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|++|+|+ +++...+..+|+.|+.++|.++..+|
T Consensus 209 vSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK 242 (292)
T KOG1681|consen 209 VSRVFPDKEELLNGALPMAELIASKSPVAVQGTK 242 (292)
T ss_pred chhhcCCHHHHHhhhHHHHHHhccCCceeeechH
Confidence 9999997 78999999999999999999887765
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=277.63 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCc-eEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEE-CCcc
Q 030277 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKV-FCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI-DGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~-F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v-~G~~ 77 (180)
|+++|.+++..++ +|+++++|||||. |+. ||+|.|++.....+...........+.++.++.+++||+||+| ||+|
T Consensus 299 ~~~~L~~a~~~~~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a 377 (546)
T TIGR03222 299 LARELDDAILHLRTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSC 377 (546)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeE
Confidence 5789999999998 4599999999998 566 9999999843221211112233344567889999999999999 8999
Q ss_pred chhh-HHHHhhCCEEEE-------cCCeEEeCccccccccCCcchhhhhhhhc-CHHHH--HHHHhcCCCCCHHHHHhcC
Q 030277 78 LGGG-LEMALACDLRIC-------GEAALLGLPETGLAIIPGAGGTQRLPRLV-GKSVA--KDIIFTGRKVSGKDAMSLG 146 (180)
Q Consensus 78 ~g~G-~~l~~~~D~~i~-------~~~~~~~~~e~~~G~~p~~~~~~~l~~~~-g~~~a--~~l~l~g~~~~a~ea~~~G 146 (180)
+||| ++|+++||++|+ +++++|++||+++|++|+++++++|++++ |..++ ++++++|++++|+||+++|
T Consensus 378 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~G 457 (546)
T TIGR03222 378 FAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLG 457 (546)
T ss_pred eHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcC
Confidence 9999 999999999999 89999999999999999999999999998 99888 5699999999999999999
Q ss_pred ccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 147 LVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 147 lv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
||++++|++++.+++.++++++++++|.+++.+|
T Consensus 458 lv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 491 (546)
T TIGR03222 458 LVTAAPDDIDWEDEIRIALEERASFSPDALTGLE 491 (546)
T ss_pred CcccccCchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999887
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=279.01 Aligned_cols=180 Identities=19% Similarity=0.164 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHhhc-CCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC-Cccc
Q 030277 1 MLRGLKHAFETISE-DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~-d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~-G~~~ 78 (180)
|+.+|.++++.++. |+++++|||||.|++.||+|.|++.....+..........++.++.++.++||||||+|| |+|+
T Consensus 303 ~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~ 382 (550)
T PRK08184 303 MARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCF 382 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCcee
Confidence 67899999999986 799999999998325999999986322111111122234455678889999999999997 9999
Q ss_pred hhh-HHHHhhCCEEEEc-------CCeEEeCccccccccCCcchhhhhhhh-cCHHHHHHH--HhcCCCCCHHHHHhcCc
Q 030277 79 GGG-LEMALACDLRICG-------EAALLGLPETGLAIIPGAGGTQRLPRL-VGKSVAKDI--IFTGRKVSGKDAMSLGL 147 (180)
Q Consensus 79 g~G-~~l~~~~D~~i~~-------~~~~~~~~e~~~G~~p~~~~~~~l~~~-~g~~~a~~l--~l~g~~~~a~ea~~~Gl 147 (180)
||| ++|+++||+||++ ++++|++||+++|++|+++++++|+++ +|..+++++ +++|++++|+||+++||
T Consensus 383 GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GL 462 (550)
T PRK08184 383 AGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGL 462 (550)
T ss_pred hhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCC
Confidence 999 9999999999999 999999999999999999999999988 699999987 58999999999999999
Q ss_pred cceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 148 VNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 148 v~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|++++|++++++++.++++++++.||.+++.+|
T Consensus 463 v~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K 495 (550)
T PRK08184 463 VTAAPDDIDWEDEVRIALEERASLSPDALTGME 495 (550)
T ss_pred cccccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999887
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=268.84 Aligned_cols=176 Identities=21% Similarity=0.410 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-h---hHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-P---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++|+.++.|++|++|||+|. |++||+|.|++++.... . .....+.+..+.+...+.++|||+||++||+
T Consensus 37 m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~ 115 (381)
T PLN02988 37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGI 115 (381)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCe
Confidence 68899999999999999999999998 58999999999875321 1 1112223333445667899999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|. .++++++||++++|+||+++||+|+++|+++
T Consensus 116 a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 116 VMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred EeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhH
Confidence 999999999999999999999999999999999999999999999887 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhh
Q 030277 157 AQLKALEIAQEINQKVQSVFRIL 179 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~ 179 (180)
+.+.+.+++ +++..+|.++...
T Consensus 195 l~~~~~~la-~~~~~~p~~~~~~ 216 (381)
T PLN02988 195 LTALEADLC-RIGSNDPTFASTI 216 (381)
T ss_pred HHHHHHHHH-HhhccCHHHHHHH
Confidence 999888888 7777777776554
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=285.60 Aligned_cols=170 Identities=37% Similarity=0.594 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... +......+.+.++.++.++.++||||||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 35 TLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 67899999999999999999999998 6899999999987542 1222334455667788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l 193 (715)
T PRK11730 114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKL 193 (715)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030277 158 QLKALEIAQEINQK 171 (180)
Q Consensus 158 ~~~a~~~a~~~~~~ 171 (180)
.+++.+++++++..
T Consensus 194 ~~~a~~~a~~la~~ 207 (715)
T PRK11730 194 QEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999965
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=243.36 Aligned_cols=167 Identities=46% Similarity=0.798 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH--HHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE--IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++|||||. ++.||+|.|++++....... ...+.+.+++++.++..++||+|+++||+|.
T Consensus 27 ~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~ 105 (195)
T cd06558 27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAAL 105 (195)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 57899999999999999999999998 89999999999987655443 5667888899999999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|+.++++||+||++++++|++||.++|+.|+.+.++++++++|...+++++++|++++++||+++||||++++++++.
T Consensus 106 g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~ 185 (195)
T cd06558 106 GGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185 (195)
T ss_pred cHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 030277 159 LKALEIAQEI 168 (180)
Q Consensus 159 ~~a~~~a~~~ 168 (180)
+++.++++++
T Consensus 186 ~~a~~~a~~~ 195 (195)
T cd06558 186 AAALELARRL 195 (195)
T ss_pred HHHHHHHhhC
Confidence 9999988763
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=261.87 Aligned_cols=173 Identities=23% Similarity=0.422 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... ......++...+.+...+.++|||+||++||+
T Consensus 70 m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~ 148 (407)
T PLN02851 70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGI 148 (407)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 68999999999999999999999998 68999999999875421 12334455667778888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|||++|+++||+||++++++|++||+++|++|+.|++++++|+.|. .++++++||++++++||+++||+++++|+++
T Consensus 149 amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 149 TMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred EeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 999999999999999999999999999999999999999999999987 4999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030277 157 AQLKALEIAQEINQKVQSVF 176 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~ 176 (180)
+ +.+.+.+.++...++.++
T Consensus 228 l-~~l~~~l~~~~~~~~~~~ 246 (407)
T PLN02851 228 L-PLIEERLGKLLTDDPAVI 246 (407)
T ss_pred H-HHHHHHHHhhccCCHHHH
Confidence 7 666777766665554443
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=279.31 Aligned_cols=167 Identities=41% Similarity=0.700 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||+|.++++||+|.|++++.... ......+.+..++++.++.++||||||+|||+|+|
T Consensus 35 ~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 114 (708)
T PRK11154 35 FAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLG 114 (708)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence 57899999999999999999999997678999999999875432 22233344556778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCC--eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~--~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++|++++
T Consensus 115 gG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 194 (708)
T PRK11154 115 GGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSIL 194 (708)
T ss_pred hHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHH
Confidence 99999999999999987 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 030277 158 QLKALEIAQE 167 (180)
Q Consensus 158 ~~~a~~~a~~ 167 (180)
.+++.++|++
T Consensus 195 ~~~a~~~A~~ 204 (708)
T PRK11154 195 LEVAVELAKK 204 (708)
T ss_pred HHHHHHHHHh
Confidence 9999999988
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=275.92 Aligned_cols=177 Identities=39% Similarity=0.631 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||++..+++||+|.|++++.... ......+.+.++.++.++.++||||||+|||+|+|
T Consensus 30 ~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~G 109 (699)
T TIGR02440 30 FADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLG 109 (699)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 57899999999999999999997543478999999999875422 22333345566778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCC--eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~--~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|++|+++||+||++++ ++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 110 gG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l 189 (699)
T TIGR02440 110 GGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSIL 189 (699)
T ss_pred HHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHH
Confidence 99999999999999986 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------------HHhccCHHHHH
Q 030277 158 QLKALEIAQ-------------EINQKVQSVFR 177 (180)
Q Consensus 158 ~~~a~~~a~-------------~~~~~~~~a~~ 177 (180)
.+++.++++ ++++.+|.+.+
T Consensus 190 ~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 222 (699)
T TIGR02440 190 LDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA 222 (699)
T ss_pred HHHHHHHHHhCCCCCCCccchhhhcccCchhHH
Confidence 999999998 57777666643
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=276.79 Aligned_cols=169 Identities=38% Similarity=0.610 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... +......+.+..++++.++.++||||||++||+|
T Consensus 35 ~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 35 TLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 57899999999999999999999998 6899999999987542 2223334455667889999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l 193 (714)
T TIGR02437 114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKL 193 (714)
T ss_pred ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030277 158 QLKALEIAQEINQ 170 (180)
Q Consensus 158 ~~~a~~~a~~~~~ 170 (180)
.+++.++++++..
T Consensus 194 ~~~a~~~a~~~~~ 206 (714)
T TIGR02437 194 GAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=265.53 Aligned_cols=174 Identities=26% Similarity=0.361 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCceEecCCccccccCChhH---HHHHH-HHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYV-NTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++|+.++ .|+++++|||||.++++||+|.|++++....... ..... .....+.+.+.++||||||+|||
T Consensus 49 ~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG 128 (546)
T TIGR03222 49 VDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNG 128 (546)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5789999999999 7999999999997678999999999874321111 11111 11233455677899999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCC--eEEeCcccc-ccccCCcchhhhhh--hhcCHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~--~~~~~~e~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
+|+|+|++|+++||+||++++ ++|++||++ +|++|+++++.++. +++|..++++++++|++++++||+++||||+
T Consensus 129 ~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~ 208 (546)
T TIGR03222 129 TCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDE 208 (546)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceE
Confidence 999999999999999999986 799999997 99999999988887 6899999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHHHhccCHH
Q 030277 151 YVPAGQAQLKALEIAQEINQKVQS 174 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~~~~~ 174 (180)
++|++++.+++.++++++++.||.
T Consensus 209 vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 209 VVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998873
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=263.69 Aligned_cols=174 Identities=28% Similarity=0.386 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCceEecCCccccccCChhHH---HHHHHH-HHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HFYVNT-LRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++ .|+++++|||||.++++||+|.|++++........ ...... ...+...+.++||||||+|||
T Consensus 53 m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG 132 (550)
T PRK08184 53 VDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNG 132 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6789999999999 78999999999986789999999998754221111 111111 122445678899999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCC--eEEeCcccc-ccccCCcchhhhhh--hhcCHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~--~~~~~~e~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
+|+|+|++|+++||+||++++ ++|++||++ +|++|+++++++++ +++|..++++++++|++++++||+++||||+
T Consensus 133 ~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~ 212 (550)
T PRK08184 133 TCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDE 212 (550)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccE
Confidence 999999999999999999987 899999997 99999999898888 6799999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHHHhccCHH
Q 030277 151 YVPAGQAQLKALEIAQEINQKVQS 174 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~~~~~ 174 (180)
++|++++.+++.+++++|+.++|.
T Consensus 213 vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 213 VVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred eeCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998874
|
|
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=233.69 Aligned_cols=179 Identities=20% Similarity=0.367 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-------HHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-------IHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+.++.++|+.+..|+++..++++|. |++||+|.|+..+....... ...+...+..+.+.+.++|||+||.|
T Consensus 36 ~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v 114 (266)
T KOG0016|consen 36 DYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV 114 (266)
T ss_pred HHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 57899999999999999988999887 89999999998876543221 22223344457888999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+++|.|+.+...||+++++|+++|..|+.++|+.|+++.++.++++||...|.|+++.|++++|+||++.|||++++|
T Consensus 115 NGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~ 194 (266)
T KOG0016|consen 115 NGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFP 194 (266)
T ss_pred cCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++++.++++.-++++++.+|.+++..|
T Consensus 195 ~~tf~~~v~~~ikq~s~l~p~sl~~~K 221 (266)
T KOG0016|consen 195 AETFNEEVLKKIKQYSKLSPESLLGMK 221 (266)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999998766
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=268.99 Aligned_cols=169 Identities=34% Similarity=0.598 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHhhcCCCceEE-EEEeCCCCceEecCCccccccC-ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVV-MIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~v-vl~g~~~~~F~~G~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|++++++ |+||. +++||+|.|++++... +..+...+....++++.++.++||||||+|||+|+
T Consensus 42 ~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~ 120 (737)
T TIGR02441 42 LFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCL 120 (737)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 578999999999999999965 56887 7899999999988642 22333444556678889999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCC--eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC--
Q 030277 79 GGGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-- 154 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~--~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~-- 154 (180)
|+|++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++|+
T Consensus 121 GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~ 200 (737)
T TIGR02441 121 GGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLG 200 (737)
T ss_pred cHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcc
Confidence 999999999999999988 5899999999999999999999999999999999999999999999999999999986
Q ss_pred -----------chHHHHHHHHHHHHhc
Q 030277 155 -----------GQAQLKALEIAQEINQ 170 (180)
Q Consensus 155 -----------~~~~~~a~~~a~~~~~ 170 (180)
+++.+.+..++++++.
T Consensus 201 ~~~~~l~~~~~~~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 201 PGLKPAEENTIEYLEEVAVKFAQGLAN 227 (737)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhhc
Confidence 4467777777777654
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=212.55 Aligned_cols=177 Identities=28% Similarity=0.515 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC--CCCceEecCCccccccC----ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSS--VPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~--~~~~F~~G~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
..||.++|..+..|++|.+|||||. |++.||+|.|-+.-... +.+.... -...++-+.|..+||||||.|+|
T Consensus 48 V~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G 125 (282)
T COG0447 48 VDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAG 125 (282)
T ss_pred HHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc--cchhhHHHHHHhCCcceEEEEee
Confidence 5789999999999999999999975 79999999998654331 1111110 12234566788899999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+++|||-.|-+.||..|++++++|+....+.|-+-++.++.+|.|.+|..+|+|+...++.++|+||+++||||.|+|.+
T Consensus 126 ~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 126 YAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred EeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccHH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++++..++++++.+++|.++++.|
T Consensus 206 ~LE~e~v~W~~E~l~kSP~AlR~LK 230 (282)
T COG0447 206 DLEKETVQWAREMLAKSPTALRMLK 230 (282)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999987
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=199.85 Aligned_cols=178 Identities=26% Similarity=0.408 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|++.|..-..+.++|.|||+.. |+.||+|.|++++.+.+... ..+.++...+.+..|.++|+|+|+-|||++..
T Consensus 60 M~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaA 138 (287)
T KOG1682|consen 60 MMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAA 138 (287)
T ss_pred HHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhh
Confidence 68889999988888899999999998 89999999999998765443 33455666788899999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+||.|+.+||+++++++++|..|..+.|++-+.- ...+.|.+++..+.+|++||+|++++||+..||++++||+++++.
T Consensus 139 AGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTP-GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~ 217 (287)
T KOG1682|consen 139 AGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTP-GVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDK 217 (287)
T ss_pred ccceEEEeeeEEEEecCccccCCCCceeeEecCc-chhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHH
Confidence 9999999999999999999999999999963332 236889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++...|..+++..+.+-|
T Consensus 218 e~~~i~~~i~~~srav~slgk 238 (287)
T KOG1682|consen 218 EIEEITNAIKAKSRAVISLGK 238 (287)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999988876644
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=201.72 Aligned_cols=175 Identities=26% Similarity=0.486 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC----ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+..+...|..++.++.+++||+.|+++++||+|.|+...... .......+++..+.+...+.++.||.||.++|.
T Consensus 66 Mv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGI 145 (401)
T KOG1684|consen 66 MVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGI 145 (401)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeece
Confidence 6778888999999999999999999999999999998755432 233567788888999999999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
++|||+.|+..--|||+++++.|.+||..+|++|+.|++++++|+.| ..+.++.|||+++++.|++..||.+|.||.++
T Consensus 146 TMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~ 224 (401)
T KOG1684|consen 146 TMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEK 224 (401)
T ss_pred eecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhh
Confidence 99999999999999999999999999999999999999999999988 78999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030277 157 AQLKALEIAQEINQKVQSVF 176 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~ 176 (180)
+-.--.++...+..-|...+
T Consensus 225 l~~Lee~L~~~l~~dp~~~I 244 (401)
T KOG1684|consen 225 LPSLEERLLKNLNDDPQSVI 244 (401)
T ss_pred hhHHHHHHhhhcCCCcHHHH
Confidence 75444444445554443433
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-24 Score=157.29 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.+|.++++.+++|+++++|||++ +|.|.|+... ..+++++..+.+++||+||+++|.|.|+|
T Consensus 24 ~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g~g 86 (177)
T cd07014 24 GDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAASGG 86 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhHHH
Confidence 578999999999999999999987 4778776431 23456777888899999999999999999
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcchhh--------hhhhhcC--HHHHHHHHhcCCCCCHHHHHhcCcccee
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ--------RLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYY 151 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~--------~l~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v 151 (180)
+.++++||++++++++.|+.+.+..+..+...... .+++..| ....++++..|.++++++|++.||||++
T Consensus 87 ~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v 166 (177)
T cd07014 87 YWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSL 166 (177)
T ss_pred HHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccC
Confidence 99999999999999999999987666433222222 3444444 7788899999999999999999999999
Q ss_pred cCCchHHHH
Q 030277 152 VPAGQAQLK 160 (180)
Q Consensus 152 ~~~~~~~~~ 160 (180)
.+.+++.++
T Consensus 167 ~~~~e~~~~ 175 (177)
T cd07014 167 GSFDDAVAK 175 (177)
T ss_pred CCHHHHHHH
Confidence 987776543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-22 Score=147.26 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC---Cccch
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 79 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~---G~~~g 79 (180)
..+.+.|+.++.++ ++.|+|.=. |.|.++. .-..++..+..+|||||++++ |+|.|
T Consensus 16 ~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~---------------~~~~i~~~l~~~~kPvia~v~~~~G~Aas 74 (187)
T cd07020 16 DYLERAIDQAEEGG-ADALIIELD-----TPGGLLD---------------STREIVQAILASPVPVVVYVYPSGARAAS 74 (187)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHH---------------HHHHHHHHHHhCCCCEEEEEecCCCCchh
Confidence 46788899888665 677777633 2233331 122456667789999999999 99999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCc--------------chhhhhhhhcCH--HHHHHHHhcCCCCCHHHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGA--------------GGTQRLPRLVGK--SVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~--------------~~~~~l~~~~g~--~~a~~l~l~g~~~~a~ea~ 143 (180)
+|+.++++||+++++++++|+.+++..+..+.. .....+.+..|. ..+++++++|+.++++||+
T Consensus 75 gG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~ 154 (187)
T cd07020 75 AGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEAL 154 (187)
T ss_pred HHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHH
Confidence 999999999999999999999999985544332 235567888887 6889999999999999999
Q ss_pred hcCccceecCCc-hHHHH
Q 030277 144 SLGLVNYYVPAG-QAQLK 160 (180)
Q Consensus 144 ~~Glv~~v~~~~-~~~~~ 160 (180)
++||||++++++ ++.++
T Consensus 155 ~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 155 KLGVIDLIAADLNELLKK 172 (187)
T ss_pred HcCCcccccCCHHHHHHH
Confidence 999999999886 56544
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=134.82 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.+|.++|+.++.||++++|||+ .||.|.|+..+ ..+++.+..+..++||+|++++|.|.|+|
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~------------~~~~~~l~~~~~~~kpVia~v~g~a~s~g 85 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTAS------------EVIRAELAAARAAGKPVVVSAGGAAASGG 85 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCeehhHH
Confidence 67899999999999999999997 58999998553 23345667788899999999999999999
Q ss_pred HHHHhhCCEEEEcCCeEEeCccc------------cccccCC---c-chh-------------hhhh-------------
Q 030277 82 LEMALACDLRICGEAALLGLPET------------GLAIIPG---A-GGT-------------QRLP------------- 119 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~---~-~~~-------------~~l~------------- 119 (180)
+.|+++||.+++++++.++...+ ++|+-+. . +.. ..+.
T Consensus 86 y~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~ 165 (211)
T cd07019 86 YWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITL 165 (211)
T ss_pred HHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988864332 2333111 1 000 0000
Q ss_pred ----hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 120 ----RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 120 ----~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
|.+.+.. .+-+..|..+++++|++.||||++..-++..+
T Consensus 166 Va~~R~~~~~~-l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 166 VADARHSTPEQ-IDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred HHhhCCCCHHH-HHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 0111221 22245688999999999999999976555443
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=117.52 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.+.|+.++.|++++.|+|... |.|.|+.. ..++...+..++||||+.++|.|.++
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~~~s~ 71 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQAASA 71 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECChhHHH
Confidence 46889999999999999999999764 55665422 23455566778899999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCc--ch-----------hhhhh------hhcCHHHHHHHHhcCCCCCHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGA--GG-----------TQRLP------RLVGKSVAKDIIFTGRKVSGKD 141 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~--~~-----------~~~l~------~~~g~~~a~~l~l~g~~~~a~e 141 (180)
|+.|+++||.|++.+++.|+++.+..+..... .. ...+. +.+......+.+..+..++++|
T Consensus 72 g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~e 151 (161)
T cd00394 72 GYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQE 151 (161)
T ss_pred HHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHH
Confidence 99999999999999999999988865543221 00 01111 1123445677788899999999
Q ss_pred HHhcCcccee
Q 030277 142 AMSLGLVNYY 151 (180)
Q Consensus 142 a~~~Glv~~v 151 (180)
|+++||||++
T Consensus 152 A~~~GLvD~i 161 (161)
T cd00394 152 ALEYGLVDAL 161 (161)
T ss_pred HHHcCCcCcC
Confidence 9999999985
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=140.83 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=117.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|+.+..|++|++|||+-.. .|.+... .+.+++.+.++...+||+|+.++|.|.++|+
T Consensus 332 ~~~~~~l~~a~~D~~VkaIVLrinS-----pGGs~~a------------se~i~~~i~~~~~~gKPVva~~~g~aaSggY 394 (584)
T TIGR00705 332 DTVAALLRVARSDPDIKAVVLRINS-----PGGSVFA------------SEIIRRELARAQARGKPVIVSMGAMAASGGY 394 (584)
T ss_pred HHHHHHHHHHhhCCCceEEEEEecC-----CCCCHHH------------HHHHHHHHHHHHhCCCcEEEEECCccccHHH
Confidence 5678899999999999999999752 2322110 1334455666777889999999999999999
Q ss_pred HHHhhCCEEEEcCCeEE------eCcc------ccccccCCcchhhhhhh----------------------------hc
Q 030277 83 EMALACDLRICGEAALL------GLPE------TGLAIIPGAGGTQRLPR----------------------------LV 122 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~------~~~e------~~~G~~p~~~~~~~l~~----------------------------~~ 122 (180)
.++++||.+++++.+.+ +.+. .++|+.|+...+..+.+ .+
T Consensus 395 ~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~V 474 (584)
T TIGR00705 395 WIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVV 474 (584)
T ss_pred HHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 4443 47888877665554443 44
Q ss_pred CHHH-----HHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhcc-CHHHH
Q 030277 123 GKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVF 176 (180)
Q Consensus 123 g~~~-----a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a~ 176 (180)
+..+ ..+.+.+|+.++++||+++||||++. .+ +++.+.|++++.. ++..+
T Consensus 475 a~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~~~~~~v 530 (584)
T TIGR00705 475 SAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHCREQWSV 530 (584)
T ss_pred HhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCCCCCceE
Confidence 4444 66788899999999999999999993 34 7788888888887 54443
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=121.49 Aligned_cols=140 Identities=23% Similarity=0.276 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.++|+.++.|+++++|+|++. |.|.|+... ..+.+.+..+..++||+||+++|.|.|+
T Consensus 18 ~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~~~~~kpvia~v~g~~~s~ 80 (208)
T cd07023 18 GADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRLRKAKKPVVASMGDVAASG 80 (208)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEECCcchhH
Confidence 57889999999999999999999884 678877441 2345567778888999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcchh------------------hhhhhhcC-------
Q 030277 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAGGT------------------QRLPRLVG------- 123 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~~------------------~~l~~~~g------- 123 (180)
|+.++++||.+++++.+.|+...+ ++|+-+..... ..+.+.+.
T Consensus 81 g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 160 (208)
T cd07023 81 GYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998865333 23332221110 00000011
Q ss_pred ----------HHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 124 ----------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 124 ----------~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
.... +-+..|..+++++|++.||||++...++..
T Consensus 161 ~~Va~~R~~~~~~~-~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 161 DVVAEGRGMSGERL-DKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred HHHHhcCCCCHHHH-HHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 1112 235678899999999999999997544443
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=121.52 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.++|+.++.|+++++|||+.. |.|.++.. ...+.+.+..+.. +|||||+++|.|.|+
T Consensus 26 ~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~------------~~~l~~~l~~~~~-~KpViA~v~g~a~s~ 87 (214)
T cd07022 26 SYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAG------------VFELADAIRAARA-GKPIVAFVNGLAASA 87 (214)
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHH------------HHHHHHHHHHHhc-CCCEEEEECCchhhH
Confidence 46899999999999999999999763 44554322 1233444555555 799999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcchh--------------h----hhh-----------
Q 030277 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAGGT--------------Q----RLP----------- 119 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~~--------------~----~l~----------- 119 (180)
|+.++++||.+++++.+.|+...+ ++|+-+..... . .+.
T Consensus 88 gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~ 167 (214)
T cd07022 88 AYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFV 167 (214)
T ss_pred HHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865433 23332111000 0 000
Q ss_pred ------hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 120 ------RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 120 ------~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|.+.....+++. |+.+++++|++.||||++...+++.
T Consensus 168 ~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 168 AAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 111133334444 9999999999999999998655544
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-16 Score=112.75 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.+++.+.|+.++.+..+ .+.|.+.||. + .....+...+..++||+++.++|.|.|+|
T Consensus 17 ~~~~~~~l~~~~~~~~i-~l~inspGG~-------~---------------~~~~~i~~~i~~~~~pvi~~v~g~a~s~g 73 (160)
T cd07016 17 AKEFKDALDALGDDSDI-TVRINSPGGD-------V---------------FAGLAIYNALKRHKGKVTVKIDGLAASAA 73 (160)
T ss_pred HHHHHHHHHhccCCCCE-EEEEECCCCC-------H---------------HHHHHHHHHHHhcCCCEEEEEcchHHhHH
Confidence 46788899998877443 4555555332 1 11234666777889999999999999999
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcc---------------hhhhhhhhcC--HHHHHHHHhcCCCCCHHHHHh
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRLVG--KSVAKDIIFTGRKVSGKDAMS 144 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~~~~g--~~~a~~l~l~g~~~~a~ea~~ 144 (180)
+.++++||.|++++++.|++++...+..+... ....+.+..| .....+++..+..++++||++
T Consensus 74 ~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~ 153 (160)
T cd07016 74 SVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVE 153 (160)
T ss_pred HHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHH
Confidence 99999999999999999999887766544322 2233667777 677788888888999999999
Q ss_pred cCcccee
Q 030277 145 LGLVNYY 151 (180)
Q Consensus 145 ~Glv~~v 151 (180)
+||||++
T Consensus 154 ~GliD~v 160 (160)
T cd07016 154 LGFADEI 160 (160)
T ss_pred cCCCCcC
Confidence 9999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=115.22 Aligned_cols=141 Identities=23% Similarity=0.290 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCC--CcEEEEECCccch
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALP--IPTIAVIDGAALG 79 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kp~Ia~v~G~~~g 79 (180)
..+|.++|+.++.|+++++|||+.. |.|.++.. ..++...+.+++ ||+|+.++|.|.+
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHHHHhcCCCCEEEEECCccch
Confidence 4688999999999999999999885 55665532 133444555555 9999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccc------------cccccCC------------cc--hh----hhh-----------
Q 030277 80 GGLEMALACDLRICGEAALLGLPET------------GLAIIPG------------AG--GT----QRL----------- 118 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~------------~~--~~----~~l----------- 118 (180)
+|+.++++||.+++++++.++...+ ++|+-+. .. .+ ..+
T Consensus 75 ~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f 154 (207)
T TIGR00706 75 GGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQF 154 (207)
T ss_pred HHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765333 2333210 00 00 001
Q ss_pred ------hhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHH
Q 030277 119 ------PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163 (180)
Q Consensus 119 ------~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~ 163 (180)
.|.+......+ +..++.+++++|++.||||++...+++.+...+
T Consensus 155 ~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 155 VQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred HHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 01122333333 467889999999999999999866666555443
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-15 Score=113.19 Aligned_cols=141 Identities=21% Similarity=0.155 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.++|+.+..|++|++|||+.. +..| ++.+. +.+++.+..+...+|||||.++| +.++
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~---------------~el~~~i~~~~~~~kpVia~~~~-~~sg 91 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKL---------------EELRQALERFRASGKPVIAYADG-YSQG 91 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHH---------------HHHHHHHHHHHHhCCeEEEEeCC-CCch
Confidence 36789999999999999999999997 4444 33322 23455666677789999999998 8899
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcc--------hhhhh------------h---------
Q 030277 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAG--------GTQRL------------P--------- 119 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~--------~~~~l------------~--------- 119 (180)
|+.++++||.+++.+.+.++...+ ++|+-+... ...+. .
T Consensus 92 gy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~ 171 (222)
T cd07018 92 QYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQ 171 (222)
T ss_pred hhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543 233322100 00000 0
Q ss_pred --------hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 120 --------RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 120 --------~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|.+......+ +..|+.+++++|++.||||++...+++.+.
T Consensus 172 f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 172 YLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 1111222222 345999999999999999999866666544
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-13 Score=97.95 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
..|.++|+.+++++ ++.|++.=. |.|.++ .....+...+..+++|+|+.|+|.|.++|+
T Consensus 16 ~~l~~~l~~a~~~~-~~~ivl~in-----spGG~v---------------~~~~~I~~~l~~~~~pvva~V~g~AaSaG~ 74 (178)
T cd07021 16 AFVERALKEAKEEG-ADAVVLDID-----TPGGRV---------------DSALEIVDLILNSPIPTIAYVNDRAASAGA 74 (178)
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEE-----CcCCCH---------------HHHHHHHHHHHhCCCCEEEEECCchHHHHH
Confidence 45788899998886 566666554 223322 234566778888999999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccccccccCCc--------ch---hhhhhhhcC--HHHHHHHHhcC-------------CC
Q 030277 83 EMALACDLRICGEAALLGLPETGLAIIPGA--------GG---TQRLPRLVG--KSVAKDIIFTG-------------RK 136 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~--------~~---~~~l~~~~g--~~~a~~l~l~g-------------~~ 136 (180)
.++++||++++++++.++.+++-.+- +.. .. ...+.+.-| ...+..++... ..
T Consensus 75 ~ia~a~d~i~m~p~a~iG~~~~v~~~-~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~ 153 (178)
T cd07021 75 LIALAADEIYMAPGATIGAAEPIPGD-GNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLT 153 (178)
T ss_pred HHHHhCCeEEECCCCeEecCeeEcCC-CccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceee
Confidence 99999999999999999988663221 110 00 011222222 44455665544 37
Q ss_pred CCHHHHHhcCccceecCC-chH
Q 030277 137 VSGKDAMSLGLVNYYVPA-GQA 157 (180)
Q Consensus 137 ~~a~ea~~~Glv~~v~~~-~~~ 157 (180)
++++||++.|++|.+.++ +++
T Consensus 154 lta~eA~~~g~~d~ia~~~~~l 175 (178)
T cd07021 154 LTADEALKVGYAEGIAGSLDEL 175 (178)
T ss_pred eCHHHHHHhCCeEEEECCHHHH
Confidence 999999999999999875 444
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=103.47 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|+.+..|++||+|||+-..+ |... .. .+.+++.+.++....||+|+.+.+.|..||+
T Consensus 350 ~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~--------~a----se~i~~~i~~~r~~gKPVvas~~~~aASggY 412 (618)
T PRK10949 350 DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSV--------TA----SEVIRAELAAARAAGKPVVVSMGGMAASGGY 412 (618)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcH--------HH----HHHHHHHHHHHHhcCCcEEEEECCCCccHHH
Confidence 46788999999999999999988732 3211 11 2344555666667889999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccc------------cccccCCcchhhhh-----------------h--------------
Q 030277 83 EMALACDLRICGEAALLGLPET------------GLAIIPGAGGTQRL-----------------P-------------- 119 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~~~~l-----------------~-------------- 119 (180)
.++++||.+++.+.+..+.-.+ ++|+-.....+..+ .
T Consensus 413 ~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~V 492 (618)
T PRK10949 413 WISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLV 492 (618)
T ss_pred HHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876554322 24432221111000 0
Q ss_pred ---hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHH
Q 030277 120 ---RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162 (180)
Q Consensus 120 ---~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~ 162 (180)
|.+...... -+..|+.+++++|++.||||++-..++..+.+.
T Consensus 493 a~~R~~~~~~v~-~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~ 537 (618)
T PRK10949 493 ADSRHKTPEQID-KIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAA 537 (618)
T ss_pred HhhCCCCHHHHH-HHhcCCcccHHHHHHcCCCccCCCHHHHHHHHH
Confidence 111233332 356899999999999999999965444443333
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=84.50 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC---Cccch
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 79 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~---G~~~g 79 (180)
..|.+.++.++.+ ..+.|+|.=. |.|.++. ....+...+...++||++.++ |.|.+
T Consensus 16 ~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~---------------~~~~I~~~i~~~~~pvv~~v~p~g~~AaS 74 (172)
T cd07015 16 DQFDRYITIAEQD-NAEAIIIELD-----TPGGRAD---------------AAGNIVQRIQQSKIPVIIYVYPPGASAAS 74 (172)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCcCEEEEEecCCCeehh
Confidence 4577888888765 5677777554 3344332 123455666778999999999 99999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccC-------Cc----chh---hhhhhhcC--HHHHHHHHhcCCCCCHHHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIP-------GA----GGT---QRLPRLVG--KSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p-------~~----~~~---~~l~~~~g--~~~a~~l~l~g~~~~a~ea~ 143 (180)
+|+.++++||.+++.+++.++...+-.+..+ +. ... ..+.+.-| ...+..++.....++++||+
T Consensus 75 ag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~ 154 (172)
T cd07015 75 AGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEAL 154 (172)
T ss_pred HHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHH
Confidence 9999999999999999999998887543211 00 000 11222223 45667777788899999999
Q ss_pred hcCccceecCC
Q 030277 144 SLGLVNYYVPA 154 (180)
Q Consensus 144 ~~Glv~~v~~~ 154 (180)
++|+||.+.++
T Consensus 155 ~~G~iD~ia~~ 165 (172)
T cd07015 155 KYGVIEVVARD 165 (172)
T ss_pred HcCCceeeeCC
Confidence 99999999976
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=83.29 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.+++.+.|..++.++..+.|+|.=. |.|.++ ..-..++..+...++|+++.+.|.|.++|
T Consensus 14 ~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~~~~i~~~i~~~~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 14 ANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV---------------FAGMAIYDTIKFIKADVVTIIDGLAASMG 73 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCceEEEEeehhhHH
Confidence 4577888999998877676666543 334332 12234566666788999999999999999
Q ss_pred HHHHhhCC--EEEEcCCeEEeCccccccccCCcc---------------hhhhhhhh--cCHHHHHHHHhcCCCCCHHHH
Q 030277 82 LEMALACD--LRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRL--VGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 82 ~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~~~--~g~~~a~~l~l~g~~~~a~ea 142 (180)
..+++++| .|++.+++.+.+....-+...... ....+.+. .......+++-.+..++++||
T Consensus 74 ~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA 153 (162)
T cd07013 74 SVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREA 153 (162)
T ss_pred HHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHH
Confidence 99999999 688889999887654322211100 00112222 225555666667778899999
Q ss_pred HhcCcccee
Q 030277 143 MSLGLVNYY 151 (180)
Q Consensus 143 ~~~Glv~~v 151 (180)
+++||||++
T Consensus 154 ~~~GliD~i 162 (162)
T cd07013 154 VEYGFADTI 162 (162)
T ss_pred HHcCCCCcC
Confidence 999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.6e-10 Score=88.55 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|+.+..|++++.|+|.=. |.|..... .+.+.+.++++..-+ |+++.|++.|..||+
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~in-----SPGG~v~a------------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY 144 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRIN-----SPGGSVVA------------SELIARALKRLRAKK-PVVVSVGGYAASGGY 144 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEE-----CcCCchhH------------HHHHHHHHHHHhhcC-CEEEEECCeecchhh
Confidence 567888999999999999999775 33432211 234455666666655 999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC---------------------------------------
Q 030277 83 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG--------------------------------------- 123 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g--------------------------------------- 123 (180)
.++++||.++|++.+..|--.+..+. |+ ...+-++.|
T Consensus 145 ~IA~aAd~I~a~p~si~GSIGVi~~~-~~---~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 145 YIALAADKIVADPSSITGSIGVISGA-PN---FEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhccCCEEEecCCceeeeceeEEec-CC---HHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865554331 21 222333333
Q ss_pred -----------HHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHH
Q 030277 124 -----------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163 (180)
Q Consensus 124 -----------~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~ 163 (180)
......-+.+|+-+++++|++.||||++...++....+.+
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~ 271 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAE 271 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHH
Confidence 1111345678999999999999999999755444444333
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-11 Score=96.67 Aligned_cols=170 Identities=17% Similarity=0.072 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.++|..-++.++.+..+++.++|+...+.|++|.|..+..-........++..+++++.+.++++.|+.+++||++.-++
T Consensus 84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk 163 (380)
T KOG1683|consen 84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK 163 (380)
T ss_pred HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence 46777888888888888999999988999999999999877666666667888999999999999999999999998888
Q ss_pred --HHHHhhCCEEEEc--CCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC--c
Q 030277 82 --LEMALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA--G 155 (180)
Q Consensus 82 --~~l~~~~D~~i~~--~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~--~ 155 (180)
+.+.-+|+|++.. +.-..+..+...++..+-.-.-.+...+|...+-..+--+.-++-.|+.+-|+++++.|. +
T Consensus 164 ~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~e 243 (380)
T KOG1683|consen 164 LPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEE 243 (380)
T ss_pred ccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHH
Confidence 8999999999988 444457788877754333345556666787777777888889999999999999999984 5
Q ss_pred hHHHHHHHHHHHHhcc
Q 030277 156 QAQLKALEIAQEINQK 171 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~ 171 (180)
++.+..+...+.....
T Consensus 244 el~~~~~~g~kT~kg~ 259 (380)
T KOG1683|consen 244 ELLEKGRAGIKTGKGI 259 (380)
T ss_pred HHHHHHhhhhhccCcc
Confidence 5666555555444433
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-09 Score=77.18 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
..++...|..++.++..+.|++.=. |.|.|+. ....++..+...+.|+++.+.|.|.++|
T Consensus 23 ~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~---------------~~~~i~~~l~~~~~~v~t~~~g~aaS~~ 82 (171)
T cd07017 23 ANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVT---------------AGLAIYDTMQYIKPPVSTICLGLAASMG 82 (171)
T ss_pred HHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCCCEEEEEEeEehhHH
Confidence 3567888888887765454444332 2233331 1234455556678999999999999999
Q ss_pred HHHHhhCC--EEEEcCCeEEeCccccccccCCcc---------------hhhhhhhhcC--HHHHHHHHhcCCCCCHHHH
Q 030277 82 LEMALACD--LRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRLVG--KSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 82 ~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~~~~g--~~~a~~l~l~g~~~~a~ea 142 (180)
..+++++| .|++.+++.|.+.+...+...... ....+.+..| .....+++.....++++||
T Consensus 83 ~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA 162 (171)
T cd07017 83 ALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEA 162 (171)
T ss_pred HHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Confidence 99999999 799999999999887655432210 0111222222 3455566668889999999
Q ss_pred HhcCcccee
Q 030277 143 MSLGLVNYY 151 (180)
Q Consensus 143 ~~~Glv~~v 151 (180)
+++||||+|
T Consensus 163 ~e~GiiD~V 171 (171)
T cd07017 163 KEYGLIDKI 171 (171)
T ss_pred HHcCCCccC
Confidence 999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=81.77 Aligned_cols=104 Identities=24% Similarity=0.282 Sum_probs=70.5
Q ss_pred HHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcch------------
Q 030277 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET------------GLAIIPGAGG------------ 114 (180)
Q Consensus 59 ~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~------------ 114 (180)
+.++...+||+++.+.+.|..+|+.++++||.+++.|.+.++...+ ++|+-+....
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 4556678899999999999999999999999999999988775444 1222110000
Q ss_pred --h----hhhhhhcC-----------HH---HHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHH
Q 030277 115 --T----QRLPRLVG-----------KS---VAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162 (180)
Q Consensus 115 --~----~~l~~~~g-----------~~---~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~ 162 (180)
+ ..+...+. .. .-.+-+.+|+.+++++|++.||||++...+++..++.
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 0 00000000 11 1123456899999999999999999987776655443
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=77.05 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCCCceEE--EEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 2 LRGLKHAFETISEDSSANVV--MIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~v--vl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
.+++.+.|..++.++..+.| .|.+. |.++ .....++..+..++.|+++.+.|.|.+
T Consensus 49 ~~~i~~~L~~l~~~~~~~~I~l~INSp-------GG~v---------------~~g~~I~d~i~~~~~~v~t~~~G~aaS 106 (207)
T PRK12553 49 ANDVMAQLLVLESIDPDRDITLYINSP-------GGSV---------------TAGDAIYDTIQFIRPDVQTVCTGQAAS 106 (207)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeCC-------CCcH---------------HHHHHHHHHHHhcCCCcEEEEEeehhh
Confidence 35677888888865433333 33443 3332 122345666777788999999999999
Q ss_pred hhHHHHhhCC--EEEEcCCeEEeCccccc-c-ccCCc---------------chhhhhhhhcC--HHHHHHHHhcCCCCC
Q 030277 80 GGLEMALACD--LRICGEAALLGLPETGL-A-IIPGA---------------GGTQRLPRLVG--KSVAKDIIFTGRKVS 138 (180)
Q Consensus 80 ~G~~l~~~~D--~~i~~~~~~~~~~e~~~-G-~~p~~---------------~~~~~l~~~~g--~~~a~~l~l~g~~~~ 138 (180)
.|..++++|| .|++.+++.|.+.+... | ..... .....+.+..| .....+++-.+..++
T Consensus 107 aa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lt 186 (207)
T PRK12553 107 AGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLT 186 (207)
T ss_pred HHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccc
Confidence 9999999999 59999999999988753 2 11100 00122333333 455566777889999
Q ss_pred HHHHHhcCccceecCC
Q 030277 139 GKDAMSLGLVNYYVPA 154 (180)
Q Consensus 139 a~ea~~~Glv~~v~~~ 154 (180)
|+||+++||||+++++
T Consensus 187 a~EA~e~GliD~I~~~ 202 (207)
T PRK12553 187 AEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHcCCccEEcCc
Confidence 9999999999999975
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=75.02 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcch---------------hhhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGG---------------TQRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~---------------~~~l~ 119 (180)
.++..+...+.|+++.+.|.|.+.|..++++++ .|++.+++.+.+.+..-+......- ...+.
T Consensus 80 ~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a 159 (200)
T PRK00277 80 AIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILA 159 (200)
T ss_pred HHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667889999999999999999998764 6999999999887764332111100 01233
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+..| .....+++.....++|+||+++||||+|++.
T Consensus 160 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 160 EHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 3333 4555566667889999999999999999965
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-08 Score=73.83 Aligned_cols=99 Identities=14% Similarity=0.036 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcch---------------hhhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGG---------------TQRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~---------------~~~l 118 (180)
..++..+..++.||++.+.|.|.+.|..++++||. |++.+++.+.+....-+......- ...+
T Consensus 71 ~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~ 150 (197)
T PRK14512 71 FAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDII 150 (197)
T ss_pred HHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677789999999999999999999999985 999999998777664333221110 0112
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 119 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 119 ~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
.+..| .....+++.....++++||+++||||+|++.
T Consensus 151 a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 151 AKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred HHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 22222 3445566666779999999999999999975
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.5e-09 Score=77.02 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcch---------------hhhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGG---------------TQRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~---------------~~~l 118 (180)
..+...+..++.|+++.+.|.|.+.|..+.++||. |++.+++.|.+.+...+......- ...+
T Consensus 64 ~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~ 143 (182)
T PF00574_consen 64 LAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIY 143 (182)
T ss_dssp HHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999 899999999999886655331111 0112
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 119 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 119 ~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
.+..| .....+++-....++++||+++||||+|+..
T Consensus 144 ~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 144 AERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 22222 3344455555668899999999999999853
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.2e-08 Score=72.14 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccc-cCCcch---------------hhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAI-IPGAGG---------------TQR 117 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~-~p~~~~---------------~~~ 117 (180)
..++..+...+.|+...+-|.|.+.|..+++++| .|++.+++.+.+.+...|+ .....- ...
T Consensus 78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ 157 (200)
T CHL00028 78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRV 157 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667778899999999999999999999999 6999999999998876552 211100 112
Q ss_pred hhhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 118 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 118 l~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+.+..| .....+.+.....++|+||+++||||+|+++.
T Consensus 158 ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 158 YAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 222223 34445666677799999999999999999653
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-07 Score=80.92 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.++.++|+.+..|+.|++|||.-.+ +.|.++. ..+++++.+..+....|||+|..++.+ .+|
T Consensus 78 l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~------------~~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~ 140 (584)
T TIGR00705 78 LFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSP------------HLVEIGSALSEFKDSGKPVYAYGTNYS-QGQ 140 (584)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHH------------HHHHHHHHHHHHHhcCCeEEEEEcccc-chh
Confidence 56899999999999999999998752 1132221 134566677777788999999888765 678
Q ss_pred HHHHhhCCEEEEcCCeEEeCc
Q 030277 82 LEMALACDLRICGEAALLGLP 102 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~ 102 (180)
+.++++||-+++.|.+.+++.
T Consensus 141 YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 141 YYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred hhhhhhCCEEEECCCceEEee
Confidence 999999999999999887553
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=73.56 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+...++|+|+.+-|.|.|+|......||++++.+++.++.- -|.+.+...+...--...+.+.
T Consensus 122 ~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~~~~a~~aa~~- 194 (256)
T PRK12319 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKDGSRATEAAEL- 194 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcCcccHHHHHHH-
Confidence 455666777778899999999999999998888889999999999887742 2333333333322111222222
Q ss_pred hcCCCCCHHHHHhcCccceecCCc---------hHHHHHHHHHHHHhccCHHHHH
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVPAG---------QAQLKALEIAQEINQKVQSVFR 177 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~~~---------~~~~~a~~~a~~~~~~~~~a~~ 177 (180)
.++++.++.+.|+||+|+|.. .+.+...+...++...++..+.
T Consensus 195 ---~~~~a~~l~~~g~iD~ii~e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (256)
T PRK12319 195 ---MKITAGELLEMGVVDKVIPEHGYFSSEIIDMIKKNLIEELAQLSQKPLEQLL 246 (256)
T ss_pred ---cCCCHHHHHHCCCCcEecCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 277999999999999999732 1223344455556666666553
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-07 Score=71.70 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|+.|-|.|.|||.-....||++++.+++.++. +-|.+.++..+.. ..++.+.
T Consensus 178 ~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~a- 247 (322)
T CHL00198 178 GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLDA- 247 (322)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHHH-
Confidence 34555666677889999999999999888866666799999999998873 2345545444443 3333333
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
....+++++++++.|+||+|+|
T Consensus 248 A~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 248 AEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred HHHcCCCHHHHHhCCCCeEecc
Confidence 3456899999999999999997
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=69.88 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=68.4
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcchh---------------hhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~ 119 (180)
.++..+...+.|+...+-|.|.+.|..+++++| .|++.+++.+.+.+..-|......-. ..+.
T Consensus 75 ~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya 154 (191)
T TIGR00493 75 AIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILA 154 (191)
T ss_pred HHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 344555556677777788999999998888766 69999999999987754332111111 1133
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
++.| .....+++..+..++|+||+++||||+++.
T Consensus 155 ~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 155 NHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 3333 455566677788999999999999999974
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-08 Score=72.44 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=62.8
Q ss_pred HhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCcccc------------ccccC---------Ccc-----hh
Q 030277 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETG------------LAIIP---------GAG-----GT 115 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~------------~G~~p---------~~~-----~~ 115 (180)
+.+..||++|.+++.+..+++.++++||-+++.+.+.++...+. +|+-+ ..+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 45689999999999999999999999999999999988765542 23211 000 00
Q ss_pred ----hhhhhhcC-----------HHH-----HHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHH
Q 030277 116 ----QRLPRLVG-----------KSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163 (180)
Q Consensus 116 ----~~l~~~~g-----------~~~-----a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~ 163 (180)
..+.+.+. ..+ ..+-+..|..+++++|++.||||++...+++.+.+.+
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~ 149 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAK 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHH
Confidence 00000000 111 1122568899999999999999999766666555443
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-07 Score=67.93 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcc---------------hhhhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~ 119 (180)
.++..+...+-||...+-|.|.+.|..+++++|. |++.+++.+......-|...... ....+.
T Consensus 74 aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya 153 (196)
T PRK12551 74 GIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELS 153 (196)
T ss_pred HHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778899999999999999999999985 89999999988887533221110 011122
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
++.| .....+.+..-..++|+||+++||||+|++..
T Consensus 154 ~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 154 ERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 3333 33445566667789999999999999999754
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-07 Score=68.61 Aligned_cols=98 Identities=8% Similarity=-0.010 Sum_probs=72.1
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcchh---------------hhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT---------------QRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~ 119 (180)
.++..+...+-||...+-|.|.+.|..|++++|. |++.+++.+.+....-|......-. ..+.
T Consensus 103 aIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya 182 (221)
T PRK14514 103 GIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIA 182 (221)
T ss_pred HHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999996 9999999999888754432221100 1122
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+..| .....+.+.....++|+||+++||||+|++.
T Consensus 183 ~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 183 DHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 2223 3444556667789999999999999999853
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=74.36 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|+.|-|.+.+||......||+++|.+++.++. +-|.+.++..+....-...+.+
T Consensus 245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe-- 316 (431)
T PLN03230 245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE-- 316 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH--
Confidence 44556667778899999999999999666655556789999999987663 2244545544443322222222
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
..+++++++++.|+||+|+|
T Consensus 317 --alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 317 --ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred --HcCCCHHHHHhCCCCeEecc
Confidence 44899999999999999997
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.6e-07 Score=71.96 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|+.|-|.|.|||..-...||++++.+++.++. +.|.+.++..+... ..+.+..
T Consensus 175 ~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~---~~a~~aa 245 (316)
T TIGR00513 175 SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDA---SKAPKAA 245 (316)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccch---hhHHHHH
Confidence 44556667777889999999999999888876556799999999998773 22444444334332 2222222
Q ss_pred hcCCCCCHHHHHhcCccceecCCc------h-------HHHHHHHHHHHHhccCHHHHH
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVFR 177 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~~~------~-------~~~~a~~~a~~~~~~~~~a~~ 177 (180)
- -.++++.++.+.|+||.|+|.. + +.+...+...++.+.++..+.
T Consensus 246 e-~~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 303 (316)
T TIGR00513 246 E-AMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELK 303 (316)
T ss_pred H-HccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 3678899999999999999721 1 223334445556666665543
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=76.60 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.++.++|+.+.+|+.|++|||.-.+.. |... . ..+++++.+..+....||++|. ...+--++
T Consensus 97 l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~--------a----~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~ 159 (618)
T PRK10949 97 LFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQ--------P----SMQYIGKALREFRDSGKPVYAV-GDSYSQGQ 159 (618)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCC----CccH--------H----HHHHHHHHHHHHHHhCCeEEEE-ecCccchh
Confidence 4678999999999999999999886211 1111 1 1345667777788889999985 44445678
Q ss_pred HHHHhhCCEEEEcCCeEEeCcc
Q 030277 82 LEMALACDLRICGEAALLGLPE 103 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e 103 (180)
+-|+.+||-+++.|.+.+++..
T Consensus 160 YyLASaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 160 YYLASFANKIYLSPQGVVDLHG 181 (618)
T ss_pred hhhhhhCCEEEECCCceEEEee
Confidence 9999999999999998776543
|
|
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=66.06 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcc---------------hhhhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l 118 (180)
..++..+...+-||...+-|.|.+.|..+++++|- |++.+++.+-++...-|...... ....+
T Consensus 75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iy 154 (201)
T PRK14513 75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIY 154 (201)
T ss_pred HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788899999999999999999999996 99999999988887654321100 01112
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 119 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 119 ~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
.+..| .....+++-....++|+||+++||||+|+++.
T Consensus 155 a~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 155 HRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 23333 34445666667799999999999999999754
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-06 Score=76.71 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|++|-|.|.|||......||+++|.+++.++. +-|.+++...+... .++.+ .
T Consensus 266 ~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-A 335 (762)
T PLN03229 266 GEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-A 335 (762)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-H
Confidence 45566667777889999999999999988887777899999999987653 22444444444432 22222 2
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
....+++|++.+++|+||+|+|
T Consensus 336 Ae~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 336 AEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred HHHcCCCHHHHHhCCCCeeecc
Confidence 3456899999999999999997
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=69.78 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+..++..+....+|+|+.|-|.+.|||..-...||++++.+++.++. +.|.+.+...+.. ...+.+..
T Consensus 175 ~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~sv------isPEg~a~Il~~~---~~~a~~aa 245 (319)
T PRK05724 175 SEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSV------ISPEGCASILWKD---ASKAPEAA 245 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEee------cCHHHHHHHHhcC---chhHHHHH
Confidence 45566677778899999999999999888876666799999999988763 2244444433332 23333333
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
- ..++++.++++.|+||+|+|
T Consensus 246 e-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 246 E-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred H-HcCCCHHHHHHCCCceEecc
Confidence 3 56789999999999999997
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-06 Score=65.55 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~ 115 (180)
.+.+.+..++.|+.+.|+..|+++|..++++||-++|.+.+.+|..+.++|-.|..+..
T Consensus 109 ~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~sil 167 (285)
T PF01972_consen 109 QIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASIL 167 (285)
T ss_pred HHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHHH
Confidence 45566777899999999999999999999999999999999999999999988865443
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.2e-06 Score=61.39 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEE--EEcCCeEEeCccccccccCCcchh---------------hhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLR--ICGEAALLGLPETGLAIIPGAGGT---------------QRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~--i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~ 119 (180)
..+..+...+.||...+-|.+.+.|..|++++|.. ++.|++++-.+...-|+.....=. ..+.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999999995 999999998888764332111000 0111
Q ss_pred hhcCH--HHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 120 RLVGK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 120 ~~~g~--~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
+..|. ..-.+..-....++|+||+++||||+|.+..+
T Consensus 156 ~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 156 EHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 11121 12223334456899999999999999997643
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=61.55 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=68.1
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcchh-----------------hh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT-----------------QR 117 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~~-----------------~~ 117 (180)
.++..+...+-|+...+-|.|.+.+..|++++|- |++.+++.+-++...-|... .+. ..
T Consensus 98 aIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G--~A~di~~~a~el~~~r~~l~~i 175 (222)
T PRK12552 98 AICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARG--QATDIQIRAKEVLHNKRTMLEI 175 (222)
T ss_pred HHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccccc--CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677788888999999999999999996 99999999988887544321 111 11
Q ss_pred hhhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 118 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 118 l~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+.+..| .....+.+-.-..++|+||+++||||+|+++
T Consensus 176 ya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 176 LSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 112222 2333344445568999999999999999965
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=62.53 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHh---cCCCcEEEEECCccchhhH-HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHH
Q 030277 51 YVNTLRSTFSFLE---ALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSV 126 (180)
Q Consensus 51 ~~~~~~~~~~~~~---~~~kp~Ia~v~G~~~g~G~-~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~ 126 (180)
..+.+.++...+. +.+.|+|+.|-|.++|+|+ .+.+.+|.+++.+++.++ ..++-++...+.+-. +.
T Consensus 89 ~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~ 159 (238)
T TIGR03134 89 INQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EE 159 (238)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hH
Confidence 3444555555555 4559999999999998875 555558888888777665 444444443333322 33
Q ss_pred HHHHHhcC--CCCCHHHHHhcCccceecCCch
Q 030277 127 AKDIIFTG--RKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 127 a~~l~l~g--~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
..++.-+- ...+...+.++|+||+++++.+
T Consensus 160 ~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 160 LEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 33443222 2356778999999999998654
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.6e-05 Score=59.17 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHH-HHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
.+.++++.+... .+-+|.+..+ + |... ++.... ..+-.....+.++.....|.|+.+.|+|.||+.
T Consensus 144 Ki~r~~e~A~~~-~lPlV~l~ds-g-----Garm------qEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 144 KIVRAVERAIEE-KCPLVIFSAS-G-----GARM------QEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred HHHHHHHHHHHc-CCCEEEEEcC-C-----Ccch------hhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 455666666555 5566777654 3 2211 111110 111222334445566789999999999999964
Q ss_pred -HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHH
Q 030277 83 -EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 161 (180)
Q Consensus 83 -~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a 161 (180)
.+++.+|++++.+++.+++...+ .+...++... .-+--+++-+.+.|+||.|+++.++....
T Consensus 211 as~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~l------pe~~~~ae~~~~~G~vD~Vv~~~e~r~~l 273 (292)
T PRK05654 211 ASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREKL------PEGFQRAEFLLEHGAIDMIVHRRELRDTL 273 (292)
T ss_pred HHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhhh------hhhhcCHHHHHhCCCCcEEECHHHHHHHH
Confidence 56778999999998877764331 1111111110 00112567778899999999999999998
Q ss_pred HHHHHHHhccCH
Q 030277 162 LEIAQEINQKVQ 173 (180)
Q Consensus 162 ~~~a~~~~~~~~ 173 (180)
.++.+.+..+++
T Consensus 274 ~~~L~~~~~~~~ 285 (292)
T PRK05654 274 ASLLALHTKQPA 285 (292)
T ss_pred HHHHHHHhcCCC
Confidence 888887765543
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.9e-05 Score=59.88 Aligned_cols=138 Identities=14% Similarity=0.229 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh-
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG- 81 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G- 81 (180)
.+.++++.+.+. .+-+|.+..+ +++ -. ++.. ....+-.....+.++.....|.|+.+.|+|.||+
T Consensus 143 Ki~r~~e~A~~~-~lPlV~l~dS-gGa-----Rm------qEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 143 KFVRAIEKALED-NCPLIIFSAS-GGA-----RM------QEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred HHHHHHHHHHHc-CCCEEEEEcC-CCc-----cc------ccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 455666666544 5566777665 222 11 1111 1111122233445566678999999999999996
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHH
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 161 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a 161 (180)
+.+++.+|++++.+++.+++...+. +.+.++.. +.-+--+++-+.+.|+||.|+++.++.+..
T Consensus 210 as~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~------lpe~~q~ae~~~~~G~vD~iv~~~~~r~~l 272 (285)
T TIGR00515 210 ASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREK------LPEGFQTSEFLLEHGAIDMIVHRPEMKKTL 272 (285)
T ss_pred HHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCc------cchhcCCHHHHHhCCCCcEEECcHHHHHHH
Confidence 4567899999999998887744431 11111110 011112466677899999999999999888
Q ss_pred HHHHHHHhcc
Q 030277 162 LEIAQEINQK 171 (180)
Q Consensus 162 ~~~a~~~~~~ 171 (180)
.++.+.+..+
T Consensus 273 ~~~L~~~~~~ 282 (285)
T TIGR00515 273 ASLLAKLQNL 282 (285)
T ss_pred HHHHHHHhhC
Confidence 8887765543
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=65.14 Aligned_cols=136 Identities=15% Similarity=0.255 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC---Cccc
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAAL 78 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~---G~~~ 78 (180)
.+.++++++.++++..- ++|+.=..++ | ..+.++++.+.|.+.+.|++..+. ++|.
T Consensus 42 ~~~l~r~l~~A~~~~a~-~vvl~ldTPG----G----------------l~~sm~~iv~~i~~s~vPV~~yv~p~ga~Aa 100 (436)
T COG1030 42 ADYLQRALQSAEEENAA-AVVLELDTPG----G----------------LLDSMRQIVRAILNSPVPVIGYVVPDGARAA 100 (436)
T ss_pred HHHHHHHHHHHHhCCCc-EEEEEecCCC----c----------------hHHHHHHHHHHHHcCCCCEEEEEcCCCcchh
Confidence 35678888888877532 3333222122 1 235667899999999999999883 5799
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccc-c--CCcchhh-------hhhhhc--CHHHHHHHHhcCCCCCHHHHHhcC
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAI-I--PGAGGTQ-------RLPRLV--GKSVAKDIIFTGRKVSGKDAMSLG 146 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~-~--p~~~~~~-------~l~~~~--g~~~a~~l~l~g~~~~a~ea~~~G 146 (180)
.+|.-++++||+..|+|.+.++....-.+- . +....+. -+.+.- ....+.+++.....++++||.+.|
T Consensus 101 SAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 101 SAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred chhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcC
Confidence 999999999999999999999876653322 1 1111011 112222 255677888889999999999999
Q ss_pred ccceecCC-chHH
Q 030277 147 LVNYYVPA-GQAQ 158 (180)
Q Consensus 147 lv~~v~~~-~~~~ 158 (180)
++|-+..+ .|+.
T Consensus 181 vid~iA~~~~ell 193 (436)
T COG1030 181 VIDLIARDLNELL 193 (436)
T ss_pred ccccccCCHHHHH
Confidence 99988754 4443
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.6e-05 Score=58.53 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=55.1
Q ss_pred HhcCCCcEEEEECCc--cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCH--HHHHHHHhcCCCC
Q 030277 62 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK--SVAKDIIFTGRKV 137 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~--~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~--~~a~~l~l~g~~~ 137 (180)
+... .|+|+.+.|+ |+||+..++..||++|+++++.+++...+. .....|. -...+--|..+.+
T Consensus 133 ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V-----------Ie~~~G~e~~~~~d~~l~~~~l 200 (274)
T TIGR03133 133 ARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRALVWRTT 200 (274)
T ss_pred HhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH-----------HHHhcCCCccCHHHhccccccc
Confidence 3444 9999999999 899999999999999999998777633310 1111111 0111222233445
Q ss_pred CHHHHHhcCccceecCCc
Q 030277 138 SGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 138 ~a~ea~~~Glv~~v~~~~ 155 (180)
.+......|++|.+++++
T Consensus 201 GG~~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 201 GGKHRFLSGDADVLVEDD 218 (274)
T ss_pred chHhHhhcccceEEeCCH
Confidence 566778899999999874
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.3e-05 Score=59.93 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHh
Q 030277 53 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIF 132 (180)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l 132 (180)
+.+...+..+.+.++|+||.|=|---+||.-=...+|.++|-++++++. +.|.+.++.++.. .+++.+..
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eAA- 244 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEAA- 244 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHHH-
Confidence 3445556667889999999999998888877777889999999999983 4577777766664 34444443
Q ss_pred cCCCCCHHHHHhcCccceecCC
Q 030277 133 TGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 133 ~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
...++++++.+++|+||.|+|.
T Consensus 245 e~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 245 EAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HHcCCCHHHHHhCCCcceeccC
Confidence 4557999999999999999974
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00072 Score=53.78 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=59.7
Q ss_pred cCCCcEEEEECCccchhhHH-HHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLE-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~-l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
.-..|.|+.+.|+|.||+.. +++.||++|+.+++.+++...+. ....+|.. +.-.--+++-.
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~t~ge~------lpe~fq~ae~l 267 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQTLNKT------VPEGSQAAEYL 267 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHHhcCCc------CCcccccHHHH
Confidence 46789999999999999764 57779999998888777644321 00000000 00001247778
Q ss_pred HhcCccceecCCchHHHHHHHHHHHH
Q 030277 143 MSLGLVNYYVPAGQAQLKALEIAQEI 168 (180)
Q Consensus 143 ~~~Glv~~v~~~~~~~~~a~~~a~~~ 168 (180)
.+.|+||.+|+..++.+...++.+-+
T Consensus 268 ~~~G~vD~iV~r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 268 FDKGLFDLIVPRNLLKGVLSELFQLH 293 (296)
T ss_pred HhCcCceEEEcHHHHHHHHHHHHHhh
Confidence 89999999999998887776665543
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00059 Score=54.49 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=35.3
Q ss_pred HhcCCCcEEEEECCc--cchhhHHHHhhCCEEEEcCCeEEeCcc
Q 030277 62 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPE 103 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~--~~g~G~~l~~~~D~~i~~~~~~~~~~e 103 (180)
+... +|+|+.+.|. |+||+...+..||++|+++++.+++..
T Consensus 142 ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG 184 (301)
T PRK07189 142 LRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG 184 (301)
T ss_pred HhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC
Confidence 3444 9999999999 999999999999999999998777643
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00057 Score=53.32 Aligned_cols=140 Identities=16% Similarity=0.239 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCccchh-h
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG-G 81 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~-G 81 (180)
.+.++++.+-.+ .+.+|+++.+|| . .+++.. ....+......+.++..-..|.|+.+..++.|| -
T Consensus 145 ki~ra~E~A~e~-k~P~v~f~aSGG------A------RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVs 211 (294)
T COG0777 145 KITRAIERAIED-KLPLVLFSASGG------A------RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 211 (294)
T ss_pred HHHHHHHHHHHh-CCCEEEEecCcc------h------hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 467777777655 578888888742 2 122221 122234556677888889999999999999888 4
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHH
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 161 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a 161 (180)
..+++.-|+.++-|++.++|...+. .-+.....++.. --+++-.++.|+||.||+..++....
T Consensus 212 ASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPeg----------fQ~aEfLlehG~iD~iv~R~elr~tl 274 (294)
T COG0777 212 ASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPEG----------FQTAEFLLEHGMIDMIVHRDELRTTL 274 (294)
T ss_pred HhHHhccCeeecCcccccccCcchh-------hhhhhcccCCcc----------hhhHHHHHHcCCceeeecHHHHHHHH
Confidence 7999999999999999888765531 111122222211 12477788999999999999888887
Q ss_pred HHHHHHHhccCH
Q 030277 162 LEIAQEINQKVQ 173 (180)
Q Consensus 162 ~~~a~~~~~~~~ 173 (180)
..+...+...++
T Consensus 275 a~ll~~~~~~~~ 286 (294)
T COG0777 275 ASLLAKLTPQPA 286 (294)
T ss_pred HHHHHHhCCCCC
Confidence 777776665443
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0014 Score=56.13 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=60.1
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCC
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 135 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~ 135 (180)
.-..++.. ..|+|+++.|+|.|+|..+...||++|+.++ +.+++... ...+ ..+|+
T Consensus 123 ~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP--------------------~vv~--~~~Ge 179 (493)
T PF01039_consen 123 RAIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP--------------------RVVE--SATGE 179 (493)
T ss_dssp HHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH--------------------HHHH--HHHSS
T ss_pred HHHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc--------------------cccc--cccCc
Confidence 33445556 9999999999999999999999999999988 77664322 1111 13467
Q ss_pred CCCHHHH-------HhcCccceecCCc-hHHHHHHHHHH
Q 030277 136 KVSGKDA-------MSLGLVNYYVPAG-QAQLKALEIAQ 166 (180)
Q Consensus 136 ~~~a~ea-------~~~Glv~~v~~~~-~~~~~a~~~a~ 166 (180)
.++.++. ..-|.+|.+++++ +..+.++++..
T Consensus 180 ~~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls 218 (493)
T PF01039_consen 180 EVDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLS 218 (493)
T ss_dssp CTSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhc
Confidence 7777653 4679999999876 23344444443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=55.88 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 83 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~ 83 (180)
...+.++.+++. ++-+|.|.-+ ++ |..|.+ .+.....+....++..+....+|.|+.+-|.+.|+|+.
T Consensus 338 K~~r~i~~a~~~-~lPlV~lvDs-~G-~~~g~~---------~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 338 KIARFIRFCDAF-NIPIVTFVDV-PG-FLPGVN---------QEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeC-cC-ccccHH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 344555555543 4555655554 22 554432 22233345556677778889999999999999888654
Q ss_pred HHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC----HHHHHHHHh---cCCCCCHHHHHhcCccceec
Q 030277 84 MAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG----KSVAKDIIF---TGRKVSGKDAMSLGLVNYYV 152 (180)
Q Consensus 84 l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g----~~~a~~l~l---~g~~~~a~ea~~~Glv~~v~ 152 (180)
-.. .+|++++.+++.++.-.. .......+.+.+. ...+++..+ .-+..++..+.+.|+||.|+
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v~~p------e~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI 479 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAVMGP------AGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI 479 (512)
T ss_pred HhccccCCCCEEEEcCCCeEeecCH------HHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE
Confidence 433 389999999887764322 1111111221111 111111111 12244788999999999999
Q ss_pred CCchHHHHHHHHHHHHhcc
Q 030277 153 PAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 153 ~~~~~~~~a~~~a~~~~~~ 171 (180)
++.+.........+.+..+
T Consensus 480 ~P~~tR~~l~~~l~~~~~~ 498 (512)
T TIGR01117 480 EPKQTRPKIVNALAMLESK 498 (512)
T ss_pred ChHHHHHHHHHHHHHHhcC
Confidence 9999888776666655443
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0055 Score=52.74 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=55.6
Q ss_pred CCCcEEEEECCccchhhHHHHhhCCEEEEcCCe-EEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH-
Q 030277 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA- 142 (180)
Q Consensus 65 ~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~-~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea- 142 (180)
-..|.|+++.|+|.|++......||++|+.+++ .+++.. +...+. .+|+.++++|.
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aG--------------------P~vv~~--~~Ge~v~~e~lG 210 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITG--------------------PQVIKT--VTGEEVTAEQLG 210 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecC--------------------hHHHHh--hcCcccchhhcc
Confidence 458999999999999998888899999999874 344311 111111 24555555544
Q ss_pred ------HhcCccceecCC-chHHHHHHHHHHHHh
Q 030277 143 ------MSLGLVNYYVPA-GQAQLKALEIAQEIN 169 (180)
Q Consensus 143 ------~~~Glv~~v~~~-~~~~~~a~~~a~~~~ 169 (180)
..-|.+|.++++ ++..+.++++..-+-
T Consensus 211 Ga~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp 244 (512)
T TIGR01117 211 GAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLP 244 (512)
T ss_pred hHHHhccccceeEEecCChHHHHHHHHHHHHhCC
Confidence 257999999876 445555666655543
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=50.66 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCH
Q 030277 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSG 139 (180)
Q Consensus 61 ~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a 139 (180)
++.....|.|+++.|.|.|||......||++|+.++ +.+++. |+...+. .+|+.+++
T Consensus 200 ~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~~--~~Ge~v~~ 257 (569)
T PLN02820 200 RMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVKA--ATGEEVSA 257 (569)
T ss_pred HHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHHh--hcCcccCH
Confidence 355567999999999999999999999999999875 444431 1111111 24555665
Q ss_pred HHH-----H--hcCccceecCCc-hHHHHHHHHHHHH
Q 030277 140 KDA-----M--SLGLVNYYVPAG-QAQLKALEIAQEI 168 (180)
Q Consensus 140 ~ea-----~--~~Glv~~v~~~~-~~~~~a~~~a~~~ 168 (180)
+|. + .-|.+|.+++++ +..+.++++..-+
T Consensus 258 eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 258 EDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 554 2 468888888765 3445555555555
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=51.61 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhh-c-
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-V- 122 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~-~- 122 (180)
....+....++..+.....|.|+.+-|.++|+|..-.. ..|++++.+++.++ ..++.++...+.+. +
T Consensus 422 ~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~-------vmg~e~aa~il~~~e~~ 494 (569)
T PLN02820 422 SGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIG-------VMGGAQAAGVLAQIERE 494 (569)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEE-------ecCHHHHHHHHHHHHhh
Confidence 34567778888889999999999999999998754443 56777777666555 54444444333321 1
Q ss_pred -----------CHHHH-HHHH--hcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 123 -----------GKSVA-KDII--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 123 -----------g~~~a-~~l~--l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
....+ ++.+ ..-+..++..+.+.|+||.|+++.+.........+.....
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 495 NKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNR 557 (569)
T ss_pred hhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcC
Confidence 11101 1111 1122457788899999999999988877665555544443
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.004 Score=53.39 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhC----CEEEEcCCeEEeCccccccccCCcchhhhhhhhcC-
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC----DLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG- 123 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~----D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g- 123 (180)
....+...+++..+..++.|+|..+-|.++|+|..-.... |++++.|++.++.-.. .......+.+..-
T Consensus 350 ~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~------e~a~~i~~~~~~~~ 423 (493)
T PF01039_consen 350 AGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGP------EGAASILYRDELEA 423 (493)
T ss_dssp TTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-H------HHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecCh------hhhheeeehhhhhh
Confidence 3446677788999999999999999999999887555555 8888888888775332 2212222221111
Q ss_pred -------HHH-HHHHHh-c-CCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 124 -------KSV-AKDIIF-T-GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 124 -------~~~-a~~l~l-~-g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
... ..+.+. . -+..++..+...+++|.++++.+.........+-..++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 424 AEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQK 481 (493)
T ss_dssp SCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred hhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence 000 111111 1 11257899999999999999998887766665554443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.043 Score=47.04 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=54.9
Q ss_pred HhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCe-EEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHH
Q 030277 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK 140 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~-~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ 140 (180)
+... .|.|++|-|.|.|||.-+...||++|+.++. ++.+- |++..+. -||+.++++
T Consensus 160 ~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mflt--------------------GP~~ik~--vtGe~V~~e 216 (526)
T COG4799 160 ASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLT--------------------GPPVIKA--VTGEEVSAE 216 (526)
T ss_pred hccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEee--------------------CHHHHHh--hcCcEeehh
Confidence 4444 9999999999999999999999999999884 32211 1111111 245555544
Q ss_pred HH-------HhcCccceecCCchHHHHHHHHHHHHhc
Q 030277 141 DA-------MSLGLVNYYVPAGQAQLKALEIAQEINQ 170 (180)
Q Consensus 141 ea-------~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 170 (180)
|. ..-|.+|.+.++| +++.++++++.+
T Consensus 217 ~LGGa~vh~~~sGva~~~a~dd---~~Ai~~vr~~ls 250 (526)
T COG4799 217 ELGGAQVHARKSGVADLLAEDD---EDAIELVRRLLS 250 (526)
T ss_pred hccchhhhcccccceeeeecCH---HHHHHHHHHHHH
Confidence 32 3348998888654 556666666554
|
|
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.4 Score=37.42 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHhcCCCcEEEEECCccchhhHHHHhhC--CEEEEcCCeEEeCccccccccCCcchhhh---hhhhcC---------
Q 030277 58 TFSFLEALPIPTIAVIDGAALGGGLEMALAC--DLRICGEAALLGLPETGLAIIPGAGGTQR---LPRLVG--------- 123 (180)
Q Consensus 58 ~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~--D~~i~~~~~~~~~~e~~~G~~p~~~~~~~---l~~~~g--------- 123 (180)
.+..+..++-||-..+-|.|.+-|..|..+- -.|++-|++++-.....-| ..+...-. ..+++-
T Consensus 142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gg--a~Gqa~Di~i~akE~~~~k~~l~~i~ 219 (275)
T KOG0840|consen 142 IYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGG--AGGQATDIVIQAKELMRIKEYLNEIY 219 (275)
T ss_pred HHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCC--cCccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666688887775554442 2366666666555444433 11111111 111111
Q ss_pred -------HHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 124 -------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 124 -------~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
.....+-+-.-+-++|+||+++||||+|++
T Consensus 220 a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 220 AKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 111112222334689999999999999986
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.19 Score=43.27 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHH----HhhCCEEEEcCCeEEeCccccccccCCcchhhhhh-h
Q 030277 46 SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM----ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP-R 120 (180)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l----~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~-~ 120 (180)
.+....++.-..++.++....+|.|..+-|.++|+|..- .+..|+.++.+++.+ ++.-+-++...+. +
T Consensus 377 ~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~i-------aVMG~egAv~i~~~k 449 (526)
T COG4799 377 QEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEI-------AVMGPEGAVSILYRK 449 (526)
T ss_pred HHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCccee-------eecCHHHHHHHHHHH
Confidence 344455667778899999999999999999999998533 334555555555554 4443333332222 2
Q ss_pred hcC---HHHHHH------HH--hcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhccC
Q 030277 121 LVG---KSVAKD------II--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 172 (180)
Q Consensus 121 ~~g---~~~a~~------l~--l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 172 (180)
.+. .....+ +. ..-+-.++--+.+.|++|.++++.+...........+..++
T Consensus 450 ~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~ 512 (526)
T COG4799 450 ELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKP 512 (526)
T ss_pred HhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCc
Confidence 221 000000 00 01112456677889999999999888777666666665553
|
|
| >PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.26 Score=39.81 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCC---CceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 3 RGLKHAFETISEDS---SANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 3 ~~l~~~l~~~~~d~---~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
.++.++|+.+...+ .+-+|||.=. |+.+. ||..|- -..+.+.+..++.|||++| ||-.-
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RG-GGs~e---DL~~FN-------------~e~varai~~~~~PvisaI-GHe~D 119 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRG-GGSIE---DLWAFN-------------DEEVARAIAASPIPVISAI-GHETD 119 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecC-CCChH---HhcccC-------------hHHHHHHHHhCCCCEEEec-CCCCC
Confidence 57888999988664 4556666332 22111 332221 1357889999999999998 66644
Q ss_pred hhHHHHhhCCEEEEcCCe
Q 030277 80 GGLEMALACDLRICGEAA 97 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~ 97 (180)
- .-.=+.||.|..||.+
T Consensus 120 ~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 120 F-TIADFVADLRAPTPTA 136 (319)
T ss_pred c-hHHHHHHHhhCCCHHH
Confidence 3 4555778888888774
|
1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity |
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.35 Score=40.94 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
.++.++++.++..+++.+||+.=. |+.+. ||..|. -..+.+.+..+|.|||++| ||-.-- .
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RG-GGs~e---DL~~Fn-------------~e~~~rai~~~~~Pvis~i-GHe~D~-t 233 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRG-GGSLE---DLWSFN-------------DEKVARAIFLSKIPIISAV-GHETDF-T 233 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecC-CCCHH---HhhhcC-------------cHHHHHHHHcCCCCEEEec-CcCCCc-c
Confidence 578888988887666667766332 33221 222221 1357889999999999998 554432 3
Q ss_pred HHHhhCCEEEEcCCe--EEeCcc
Q 030277 83 EMALACDLRICGEAA--LLGLPE 103 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~--~~~~~e 103 (180)
-.=+.+|.|..||.+ .+-.|.
T Consensus 234 i~D~vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 234 ISDFVADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred HHHHhhhccCCCcHHHHHHhCcc
Confidence 455778888888773 344443
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.83 Score=38.64 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCceEEEE-EeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 3 RGLKHAFETISEDSSANVVMI-RSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl-~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.++.++|+.++..+ +.+||| +|. +.+. ||..|- -..+.+++..++.|||++| ||-.--
T Consensus 179 ~~i~~al~~~~~~~-~Dviii~RGG--GS~e---DL~~Fn-------------~e~v~~ai~~~~~Pvis~I-GHE~D~- 237 (438)
T PRK00286 179 ASIVAAIERANARG-EDVLIVARGG--GSLE---DLWAFN-------------DEAVARAIAASRIPVISAV-GHETDF- 237 (438)
T ss_pred HHHHHHHHHhcCCC-CCEEEEecCC--CCHH---HhhccC-------------cHHHHHHHHcCCCCEEEec-cCCCCc-
Confidence 57888898887643 445555 443 2221 332221 1357889999999999998 665432
Q ss_pred HHHHhhCCEEEEcCCe
Q 030277 82 LEMALACDLRICGEAA 97 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~ 97 (180)
.-.=+.+|.|..||.+
T Consensus 238 tl~D~vAd~ra~TPta 253 (438)
T PRK00286 238 TIADFVADLRAPTPTA 253 (438)
T ss_pred cHHHHhhhccCCChHH
Confidence 3455778888888773
|
|
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=88.19 E-value=4.4 Score=31.38 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhH-HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDI 130 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~-~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l 130 (180)
.....+.+.......-|+|+.+-|.+++||| ...+.+|..++-++ +.+-..+-. +..+..++ ....-.++
T Consensus 91 lAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-------a~i~vM~~~-s~ARVTk~-~ve~Le~l 161 (234)
T PF06833_consen 91 LAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-------AMIHVMGKP-SAARVTKR-PVEELEEL 161 (234)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-------CeeecCChH-HhHHHhhc-CHHHHHHH
Confidence 3344455555677889999999999999986 78888888887663 333333222 22344432 34445555
Q ss_pred HhcCCC--CCHHHHHhcCccceecCC
Q 030277 131 IFTGRK--VSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 131 ~l~g~~--~~a~ea~~~Glv~~v~~~ 154 (180)
.-+--+ ++.+--.++|.++++.+.
T Consensus 162 a~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 162 AKSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred hhcCCCcCCCHHHHHHhccHHHHhcc
Confidence 555443 346677789999999984
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.8 Score=34.39 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
.+.++|+.+++||+.++||+-|.-++ + .+++. .+++.. ...+||+|+.+-|.+.
T Consensus 187 ~fid~L~~fe~Dp~T~~ivmiGEiGG------~-------aEe~A-------A~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 187 SFIDALEMFEADPETEAIVMIGEIGG------P-------AEEEA-------AEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cHHHHHHHHhcCccccEEEEEecCCC------c-------HHHHH-------HHHHHH-hccCCCEEEEEeccCC
Confidence 35789999999999999999997321 0 11112 233444 3345999999998876
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.85 E-value=4.9 Score=34.12 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhH---HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhh-------
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGL---EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL------- 121 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~---~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~------- 121 (180)
.+.-..++.+..--++|-|..+.|.++||-+ ...+.-|+.++.|++++++-..+ ++...+.+.
T Consensus 408 aK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~ 480 (536)
T KOG0540|consen 408 AKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVA 480 (536)
T ss_pred hhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhh
Confidence 3344567777788888999999999999754 45677788888888877654331 112122221
Q ss_pred cCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHH
Q 030277 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162 (180)
Q Consensus 122 ~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~ 162 (180)
.+... -+.+ |.|+. +...||.|.++++.+.....-
T Consensus 481 ~~~~~-~E~f--~npy~---a~~Rg~~D~II~p~~tR~vl~ 515 (536)
T KOG0540|consen 481 LKAPY-IEKF--GNPYY---AAARGWDDGIIDPSDTRKVLG 515 (536)
T ss_pred hcchH-HHHh--cCccH---HHHhhccccccChhHhhHHHH
Confidence 11111 1221 44443 467899999999877655433
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.56 E-value=3.5 Score=33.46 Aligned_cols=53 Identities=9% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+++||+.++|++-+..++ . .+.+..++++. ...+||+|+.+-|..-
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~--------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIGG-----T--------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecCC-----c--------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 5688899999999999999887321 1 11222222221 2468999999988864
|
|
| >PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A | Back alignment and domain information |
|---|
Probab=84.79 E-value=3.6 Score=29.17 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
.+.+.++.+.+||++++|++--.+ +. + -+.+.+..++.... ||+|+..-|..-
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~---~~-------------d-----~~~f~~~~~~a~~~-KPVv~lk~Grt~ 93 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG---IG-------------D-----GRRFLEAARRAARR-KPVVVLKAGRTE 93 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-----S-------------------HHHHHHHHHHHCCC-S-EEEEE-----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC---CC-------------C-----HHHHHHHHHHHhcC-CCEEEEeCCCch
Confidence 356788888889999998887752 11 0 13445566666666 999999988743
|
|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.66 E-value=2.8 Score=35.44 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
.++.++++.+++.+++.++|+-=. |+ -+ ++...|-+ ..+.+.+..++.|+|++| ||-.-. .
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVaRG-GG------Si--------EDLW~FNd--E~vaRAi~~s~iPvISAV-GHEtD~-t 239 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVARG-GG------SI--------EDLWAFND--EIVARAIAASRIPVISAV-GHETDF-T 239 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEecC-cc------hH--------HHHhccCh--HHHHHHHHhCCCCeEeec-ccCCCc-c
Confidence 578899999998888888888332 22 11 11111111 246888999999999998 554322 2
Q ss_pred HHHhhCCEEEEcCC
Q 030277 83 EMALACDLRICGEA 96 (180)
Q Consensus 83 ~l~~~~D~~i~~~~ 96 (180)
-.=..+|.|-.||.
T Consensus 240 L~DfVAD~RApTPT 253 (440)
T COG1570 240 LADFVADLRAPTPT 253 (440)
T ss_pred HHHhhhhccCCCch
Confidence 23356777887766
|
|
| >smart00250 PLEC Plectin repeat | Back alignment and domain information |
|---|
Probab=83.24 E-value=1 Score=24.27 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHhcCccce
Q 030277 133 TGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 133 ~g~~~~a~ea~~~Glv~~ 150 (180)
+|++++-.||.+.||||.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
|
|
| >PLN02522 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=81.27 E-value=6.2 Score=34.97 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCCCceEEEEEeC-CCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+++||++++|++-+. |++ ..+ .+.+..+... ..||+|+..-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------~e~----~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR-----------------DEY----SLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch-----------------hHH----HHHHHHHHhc-CCCCEEEEeccCCC
Confidence 5788899999999999999887 321 111 1222333333 78999999988876
|
|
| >PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 | Back alignment and domain information |
|---|
Probab=80.86 E-value=3.6 Score=29.77 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHH-----hcCCCcEEEEECCccc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-----EALPIPTIAVIDGAAL 78 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~kp~Ia~v~G~~~ 78 (180)
...++|....+||++++|++-+-.|-.=| ++... .+...+ ...++|+|+.+.|...
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~------------~~~A~-------~l~~a~~~~~~~~~~~pvVa~v~GT~~ 120 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC------------EDPAA-------GLIPAIKEAKAEGRKKPVVARVCGTNA 120 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH------------HHHHH-------HHHHHHSHCTHTTT-SEEEEEEESTTC
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch------------HHHHH-------HHHHHHHhccccCCCCcEEEEeeeecC
Confidence 45788899999999999999886321111 11122 223333 3478999999999876
Q ss_pred h
Q 030277 79 G 79 (180)
Q Consensus 79 g 79 (180)
-
T Consensus 121 d 121 (153)
T PF00549_consen 121 D 121 (153)
T ss_dssp H
T ss_pred C
Confidence 4
|
2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 180 | ||||
| 1hzd_A | 272 | Crystal Structure Of Human Auh Protein, An Rna-Bind | 2e-36 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 5e-35 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 2e-20 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 2e-20 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 2e-20 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 3e-19 | ||
| 2ppy_A | 265 | Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F | 7e-19 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 2e-18 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 2e-18 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 3e-18 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-18 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 4e-17 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 2e-16 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 2e-16 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 9e-16 | ||
| 3r9q_A | 262 | Structure Of A Probable Enoyl-Coa HydrataseISOMERAS | 1e-15 | ||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 1e-15 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 9e-15 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 2e-14 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 5e-14 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 6e-14 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 7e-14 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 7e-14 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 1e-13 | ||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 2e-13 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 3e-13 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 4e-13 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 9e-13 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 1e-12 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-12 | ||
| 3myb_A | 286 | Crystal Structure Of Enoyl-Coa Hydratase Mycobacter | 4e-12 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 5e-12 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 5e-12 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 5e-12 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 5e-12 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 6e-12 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 6e-12 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 6e-12 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 7e-12 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 7e-12 | ||
| 4di1_A | 277 | Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro | 5e-11 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 6e-11 | ||
| 3t88_A | 289 | Crystal Structure Of Escherichia Coli Menb In Compl | 7e-11 | ||
| 4els_A | 285 | Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co | 7e-11 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 8e-11 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 9e-11 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 2e-10 | ||
| 3h02_A | 288 | 2.15 Angstrom Resolution Crystal Structure Of Napht | 5e-10 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 5e-10 | ||
| 2uzf_A | 273 | Crystal Structure Of Staphylococcus Aureus 1,4-Dihy | 5e-10 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 5e-10 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 2e-09 | ||
| 4eml_A | 275 | Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy | 3e-09 | ||
| 3l3s_A | 263 | Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS | 3e-08 | ||
| 3gkb_A | 287 | Crystal Structure Of A Putative Enoyl-coa Hydratase | 5e-08 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 5e-08 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 6e-08 | ||
| 3h0u_A | 289 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 1e-07 | ||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 2e-07 | ||
| 3rrv_A | 276 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 2e-07 | ||
| 3t3w_A | 279 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 3e-07 | ||
| 3ome_A | 282 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 3e-07 | ||
| 4j2u_A | 365 | Crystal Structure Of An Enoyl-coa Hydratase From Rh | 4e-07 | ||
| 2gtr_A | 261 | Human Chromodomain Y-Like Protein Length = 261 | 7e-07 | ||
| 1sg4_A | 260 | Crystal Structure Of Human Mitochondrial Delta3-del | 7e-07 | ||
| 2fbm_A | 291 | Acetyltransferase Domain Of Cdy1 Length = 291 | 1e-06 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 2e-06 | ||
| 2fw2_A | 260 | Catalytic Domain Of Cdy Length = 260 | 2e-06 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 5e-06 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 6e-06 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 9e-06 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 2e-05 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 3e-05 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 4e-05 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 4e-05 | ||
| 3t8a_A | 334 | Crystal Structure Of Mycobacterium Tuberculosis Men | 4e-05 | ||
| 1q51_A | 314 | Crystal Structure Of Mycobacterium Tuberculosis Men | 4e-05 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 5e-05 | ||
| 1rjm_A | 339 | Crystal Structure Of Menb (rv0548c) From Mycobacter | 5e-05 | ||
| 1szo_A | 257 | Crystal Structure Analysis Of The 6-Oxo Camphor Hyd | 5e-05 | ||
| 1o8u_A | 257 | The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase | 6e-05 | ||
| 3m6m_A | 305 | Crystal Structure Of Rpff Complexed With Rec Domain | 2e-04 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 2e-04 | ||
| 3qre_A | 298 | Crystal Structure Of An Enoyl-Coa Hydratase Echa12_ | 3e-04 | ||
| 3i47_A | 268 | Crystal Structure Of Putative Enoyl Coa HydrataseIS | 3e-04 | ||
| 3fdu_A | 266 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 4e-04 | ||
| 3swx_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 5e-04 |
| >pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262 | Back alignment and structure |
|
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289 | Back alignment and structure |
|
| >pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275 | Back alignment and structure |
|
| >pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263 | Back alignment and structure |
|
| >pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
| >pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289 | Back alignment and structure |
|
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276 | Back alignment and structure |
|
| >pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279 | Back alignment and structure |
|
| >pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282 | Back alignment and structure |
|
| >pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365 | Back alignment and structure |
|
| >pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261 | Back alignment and structure |
|
| >pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260 | Back alignment and structure |
|
| >pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334 | Back alignment and structure |
|
| >pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339 | Back alignment and structure |
|
| >pdb|1SZO|A Chain A, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase His122ala Mutant Bound To Its Natural Product (2s,4s)- Alpha-Campholinic Acid Length = 257 | Back alignment and structure |
|
| >pdb|1O8U|A Chain A, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New Structural Diversity In The Crotonase Superfamily Length = 257 | Back alignment and structure |
|
| >pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298 | Back alignment and structure |
|
| >pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268 | Back alignment and structure |
|
| >pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266 | Back alignment and structure |
|
| >pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 2e-81
Identities = 84/175 (48%), Positives = 123/175 (70%), Gaps = 4/175 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+++ L A + + D ++IRS VP +FCAGADLKER +MS SE+ +V+ +R+ +
Sbjct: 40 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 99
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 100 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 159
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEINQK 171
+G S+AK++IF+ R + GK+A ++GL+++ + Q A KAL++A+E +
Sbjct: 160 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 214
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 4e-81
Identities = 84/171 (49%), Positives = 118/171 (69%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L L++ I+E+++ VV++ + K FCAGADLKER M+ ++ V+ +R+T
Sbjct: 37 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTME 96
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+E LP P IA I+G ALGGG E++LACD RI E+A LGL ET LAIIPGAGGTQRLPR
Sbjct: 97 MVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPR 156
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
L+G AK++I+TGR++S ++A GLV + VP + KA+EIA++I
Sbjct: 157 LIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 1e-73
Identities = 64/172 (37%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ A + I D VV++ S VPK F AGAD+ R P + T
Sbjct: 36 FYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLD 95
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLP 119
+ P IA ++G +GGGLEMALACDLR G+ A +GLPE L ++ G GGTQRL
Sbjct: 96 KIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLA 155
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
RL+G S A D+ TG ++ ++A+ +GLVN P + + + E A+++
Sbjct: 156 RLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANS 207
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 4e-70
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ R + A + + V++ ++F AG D+ E R ++ E
Sbjct: 51 VYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTAARVRLEAID 109
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ A+P PT+A + G ALG GL +ALA D R+ G+ G E +IPG GG RL R
Sbjct: 110 AVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTR 169
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+VG S AK+++F+GR ++A++LGL++ V A+ A+ +
Sbjct: 170 VVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLEC 220
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 1e-69
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 2/173 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
L L + E + D S V++ S P VF AG DL E SP+ Y ++ +
Sbjct: 32 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWL 91
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGAGGTQRL 118
L + ++ I+GA GG +AL CD RI + +GL ET L II L
Sbjct: 92 RLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTL 151
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+G A+ + G +A+ +G+V+ VP Q Q AL +
Sbjct: 152 ENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-68
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 3/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ LK I V+I F AG DL E R+ +E + T F
Sbjct: 44 LMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEGLVHSQTWHRVFD 100
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
++ +P IA + GA +GGGLE+A A +R+ +A LPE I G GG+ RLPR
Sbjct: 101 KIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPR 160
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
L+G + D++ TGR S + + G Y + G A KALE+ + Q
Sbjct: 161 LIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 4e-67
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ L A ++ +++ S KVF AG D+ E + Y + LR
Sbjct: 32 FIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPL-SYDDPLRQITR 90
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
++ P P I++++G+ GG EM ++ DL I + + L + G L R
Sbjct: 91 MIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTR 150
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
G + K++IFT ++ + A+++G++N+ V + + L++A I++K
Sbjct: 151 DAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 8e-66
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 6/174 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-----IHFYVNTL 55
M+R L+ T+++DSS V++ S+ P+ F A D++ +M + VN
Sbjct: 36 MMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVF 95
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC-GEAALLGLPETGLAIIPGAGG 114
++ + P TI + G A GGG E A D+ E A LG E + IIPG GG
Sbjct: 96 QAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGG 155
Query: 115 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
TQ L VG++ A +++ T + A S G +N +PA + +A+ I
Sbjct: 156 TQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNI 209
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 9e-66
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HFYVNTLRS 57
++R L E ++ ++ VV+ S+ F D+ + + + +L
Sbjct: 35 VVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGM 94
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQ 116
F L LP TIA + G A G G E LACD+R E A+LG PE G+ PGAG Q
Sbjct: 95 LFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQ 154
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
L RL+G+ A + + T A G VN VP + IA ++
Sbjct: 155 HLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGF 209
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 1e-65
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 3/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M+ + A E + V+++ + F AGAD++E + P + + +
Sbjct: 33 MVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPIRL--EWLNQFADWD 89
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L + P IA ++G ALGGG E+AL+CDL + AA G PE L ++PGAGGTQRL +
Sbjct: 90 RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTK 149
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
L+G A + ++TG ++S K+A LG+VN V + + +A + ++
Sbjct: 150 LIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQ 200
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 1e-65
Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF-YVNTLRSTF 59
++ + + + +D + VV+I + F AGAD+KE ++ ++ + TF
Sbjct: 33 VMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVTF 91
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
+E P IA I GAALGGGLE A++C +R E+A LGLPE L +IPG GTQRLP
Sbjct: 92 ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLP 151
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R VGK+ A +++ T ++G +A+ GLVN L++A++I K
Sbjct: 152 RYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGK 203
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 1e-64
Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ L A ET ED + +++ K F AGAD+KE + + + Y S +
Sbjct: 35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWD 91
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ + P IA ++G ALGGG E+A+ CD+ GE A G PE L IPGAGGTQRL R
Sbjct: 92 HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTR 151
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
VGKS+A +++ TG ++S +DA GLV+ P +A++ A++I
Sbjct: 152 AVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANN 202
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 2e-64
Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ + A + +D ++I S K F AGAD+KE ++ ++ + +T+
Sbjct: 53 VMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFADA--FTADFFATWG 109
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L A+ PTIA + G ALGGG E+A+ CD+ I + A G PE L ++PG GG+QRL R
Sbjct: 110 KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTR 169
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+GK+ A D+I TGR + +A GLV+ VPA +A A I+Q
Sbjct: 170 AIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQM 220
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 196 bits (502), Expect = 5e-64
Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 3/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ + A D +++ S + F AGAD+ E ++P + L S +
Sbjct: 38 LEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQA--RERNLLSGWD 94
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L + P +A + G ALGGG E+A+ CDL I + A G PE L I+PG GGTQRL R
Sbjct: 95 SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTR 154
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
VGK+ A D+ TGR ++ ++A +GLV+ VPA +AL +AQ I +
Sbjct: 155 AVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARM 205
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 1e-62
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTF 59
M+ A++ I D ++ + +C G DL + + T+
Sbjct: 37 MVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGL 95
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
L P IA ++GA LGGG EM D+R+ E A GLPE ++PGAG RL
Sbjct: 96 LLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLK 155
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R + + A ++I TG ++ +A GLV + VPAG A KA +A I +
Sbjct: 156 RQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRN 207
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 3e-62
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 11/186 (5%)
Query: 1 MLRGLKHAFETISEDSSAN----VVMIRSSVPKVFCAGADLKERRQMSPSEIHFY----- 51
++ + + + + ++ +S VF G DL Q+
Sbjct: 64 LVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYA 123
Query: 52 --VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 109
F +IA++ G ALGGG E AL+C I E ++GLPE +
Sbjct: 124 QRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLF 183
Query: 110 PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169
PG G + + + +A+ I+ G S + + +GLV+ VP GQ ++ +E
Sbjct: 184 PGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESK 243
Query: 170 QKVQSV 175
+ +
Sbjct: 244 RTPHAW 249
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 3e-62
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTF 59
+ +K A + D S V++ + F AG D E +Q+S SE I +++ + +
Sbjct: 28 LETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLY 87
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
+ + PTIA +DG A+G G + AL D R+ A +PE I G L
Sbjct: 88 QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAI-LG 146
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
G S ++II+ + + + LVN V + A+ A +
Sbjct: 147 FTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASY 198
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 2e-61
Identities = 50/171 (29%), Positives = 73/171 (42%), Gaps = 10/171 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ A D +VV++ + VFCAG DLKE +
Sbjct: 37 LRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLKELGDTTELP---------DISP 86
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ P I I+GAA+ GGLE+AL CD+ I E A + ++P G + RLP+
Sbjct: 87 KWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQ 146
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
VG +A+ + TG +S +DA+ GLV V A +A I
Sbjct: 147 KVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGN 197
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 8e-61
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 6/176 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-----EIHFYVNTL 55
+ R + ET+ +D +A V+++ + + + AG DLKE + + +
Sbjct: 37 LNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGPEILQEKIRREAS 95
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
+ + L PTIA+++G GGG +ACDL IC + A GL E I PG +
Sbjct: 96 QWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVS 155
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+ + VG + I TG+ G+ A +GLVN VP Q + +E+A+ + +K
Sbjct: 156 KAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEK 211
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 1e-60
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 2/168 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M + L A + D+ ++I + +VF G DLK +
Sbjct: 32 MQQALNEAIDAADRDNVG-ALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSY 89
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L + P P + G A+ G + + D R+ A + E + + + L
Sbjct: 90 RLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKL 149
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
+ S + + G+ A++ G ++ +A E A+E
Sbjct: 150 RLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREF 197
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 186 bits (476), Expect = 2e-60
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 6/168 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ GL+H F ++++ VV++ F +GA + + + E+
Sbjct: 31 IVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEVEV-----LDLSG 84
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ IP IA + G + GGGL + L D + + ++ P + L
Sbjct: 85 LILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILRE 144
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
+G +A+++I+TG GK+ G+ V A ++ Q+I
Sbjct: 145 KLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKI 192
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 8e-60
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 5/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ L + +++ + + F AG D + S ++ + +
Sbjct: 35 LVEALIDGVDAA-HREQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQ 92
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ P T+A+ G G G+++ AC R C A +P ++ GT+R
Sbjct: 93 RVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRD 149
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+VG A I+ + R +A +G V Q A+
Sbjct: 150 IVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATAL 200
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 1e-59
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 1/172 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTF 59
+ + AF +D + +V+++ FC+G D K+R +
Sbjct: 41 TVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQ 100
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
+ +P P IA++ G A+GGG + + CDL I + A+ G + G+ L
Sbjct: 101 RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLA 160
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R+VG A++I + R+ + ++A+ +GLVN VP + + + ++ +EI +
Sbjct: 161 RIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 1e-59
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML L A + ++ + + F AG DL E + Y + +
Sbjct: 40 MLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELAPKLAASGFRYPDGGVDPWG 98
Query: 61 FLEA-LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
++ P + + G G+E+ L D+ + E I P G T R P
Sbjct: 99 VVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFP 158
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R G + A I TG + +A+ + L+ V G+ +ALE A+ I +
Sbjct: 159 RAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARA 210
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 1e-59
Identities = 58/171 (33%), Positives = 78/171 (45%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ G+ A E D V++ + K FCAGADLK + H
Sbjct: 37 VSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLY-HPDHPEWGFAGY 95
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ PTIA ++G ALGGG E+ALA DL + E A GLPE +I AGG R+
Sbjct: 96 VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAE 155
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+ + VA ++ TG +S A GL+N V AG AL +A I
Sbjct: 156 QLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVN 206
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 2e-59
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS---EIHFYVNTLRS 57
M L A + + D V++ K F AGADL +++ E + + +L
Sbjct: 27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMR 85
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
F + P PT+A ++G A+ GG +ALACDL + E A LG E + + +
Sbjct: 86 LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVI 144
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
L R VG+ AKD++ TGR V ++A +LGLVN P G+A +A +A+E+ +
Sbjct: 145 LVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 3e-59
Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 5/169 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ A + +D + ++I + P + G DLK + + I+ V +
Sbjct: 33 VIIAFNAALDQAEKDRA---IVIVTGQPGILSGGYDLKVMTSSAEAAINL-VAQGSTLAR 88
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLP 119
+ + P P I G A+ G + L+ D RI +GL E + + G +
Sbjct: 89 RMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELAR 148
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
+ KS + + AM+ G ++ V + Q AL +A ++
Sbjct: 149 DRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQL 197
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 4e-59
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 2/173 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTL--RST 58
++ + A D + V+++ + K FC+G D K R + V+ L
Sbjct: 56 TVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDF 115
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
+ P P +A++ G ++GGG + + CDL I + A+ G + G G +
Sbjct: 116 QRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYM 175
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R+VG+ A++I F R+ K A+ +GLVN VP + + + +E+ Q
Sbjct: 176 ARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQN 228
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 4e-59
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML L A D+ ++ +F AG DL + +
Sbjct: 37 MLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGASLTPEGGINPWQ 95
Query: 61 F-LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
L P + + G L G+E+ALA D+ I E A E I P G T R P
Sbjct: 96 VDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFP 155
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R G A + T +A +G+V VP G+ A+ IAQ I ++
Sbjct: 156 RTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQ 207
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 6e-59
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ L A D SA +++ FCAGADL + Y + L
Sbjct: 49 LVEELTQAIRKA-GDGSARAIVLTGQ-GTAFCAGADLSGDAFAAD-----YPDRLIELHK 101
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
++A P+P + I+G A+G GL++A+ CDLR+ A P + + +RL
Sbjct: 102 AMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSS 161
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 166
LVG A+ ++ + K++ + A+ G+ N AQ A EIA+
Sbjct: 162 LVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIAR 207
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 8e-59
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 14/184 (7%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-----------IH 49
R L F+ IS+DS V++ + K+F +G DL + +
Sbjct: 32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLR 90
Query: 50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 109
++ + TF+ +E P P IA I G +GGG+++ ACD+R C + A + E + +
Sbjct: 91 DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLA 150
Query: 110 PGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL-KALEIAQE 167
G QRLP+++G +S+ ++ FT RK+ +A+ GLV+ P L A +A +
Sbjct: 151 ADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAAD 210
Query: 168 INQK 171
I+ K
Sbjct: 211 ISSK 214
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-58
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 4/174 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HFYVNTLRS 57
M++ + A++ + D ++ + FCAG DLK + P + Y +
Sbjct: 48 MMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRID 106
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
L P IA ++G A+ GG E+ D+R+ E+A G+ E ++ P G R
Sbjct: 107 ALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVR 166
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
L R + +VA D++ TGR ++ +A +GLV + VP GQA KALEIA+ I
Sbjct: 167 LVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAAN 220
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 1e-57
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS--- 57
+ L A + ++S + ++++S F +G L++ + + + +
Sbjct: 32 LGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLN 91
Query: 58 -TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 116
+ P T+A+I+G A GGG M LACD RI A + I P G +
Sbjct: 92 HCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASY 151
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA-QLKALEIAQEI 168
LPR++G +++ G+ + ++A+ LGL+ Q Q + + +
Sbjct: 152 FLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAV 204
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-57
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 3/170 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRST 58
M R L + I D VV++R K F +G + + + R
Sbjct: 41 MHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRIMREARDL 99
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
L L P ++ I G A+G GL +AL D+ + A + T L + G
Sbjct: 100 VLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICW 159
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
P LVG + AK + T +SG++A +GLV+ V + A +A+ +
Sbjct: 160 PLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENL 209
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 3e-57
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 4/173 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTF 59
R AF IS D VV++ S + A D ++ P E +
Sbjct: 52 THREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVL 110
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRL 118
L + +P I+ ++GAAL E L D+ + E +P I+PG G
Sbjct: 111 QNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILW 169
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
P +G + +FT K++ + A L +V+ +P + +A EIA+ + ++
Sbjct: 170 PLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQ 222
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 8e-57
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
L + F I+ D VV++ + FC D +P + + + +
Sbjct: 44 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLN 102
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLG-LPETGLAIIPGAGGTQRLP 119
L ++ +P IA ++G E+ + D+ + E+A P I+PG G P
Sbjct: 103 NLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWP 161
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
++G + + + TG+++ + A+ G VN + + +A E+A+ I +K
Sbjct: 162 HVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK 213
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 2e-56
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ R L A + + D+ +V ++ + FCAG DLK + + R
Sbjct: 43 VSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLKAFARGENVVVE-----GRGLGF 96
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
P IA ++G AL GG E+ALA DL + + G+PE ++ G GG RLP
Sbjct: 97 TERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPE 156
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+ ++A ++ TG +S + A +LG+VN G A A+ +A++I
Sbjct: 157 RIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITAN 207
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 3e-56
Identities = 65/168 (38%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
L AF D A+V ++ FCAGADLK +E+ + +
Sbjct: 39 TAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMGTDRGNEL--HPHGPGPMGP 95
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L P IA I G A+ GG+E+AL CDLR+ E A+LG+ + GGT RLPR
Sbjct: 96 SRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPR 155
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
L+G S A D+I TGR V +A+ +GLVN V GQA+ A +A EI
Sbjct: 156 LIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEI 203
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 3e-56
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 3/170 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF--YVNTLRST 58
+ RGL + + V++R VF AG +M S R
Sbjct: 38 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRVFWEARDL 96
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
P P +A ++ A+G GL +ALA D+ + G+ L L + G
Sbjct: 97 VLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLW 156
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
P LVG + AK + ++G++A LGLV V + KALE+A+ +
Sbjct: 157 PLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL 206
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 9e-56
Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI-------HFYVN 53
M+ L+ A+ D ++++ + + FC+GAD+KE + +
Sbjct: 39 MITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVKEIPEDGKVIYERPYLSTYDQWE 97
Query: 54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 113
+ + P + ++G G G++ D+ I E A P + ++ G
Sbjct: 98 APQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAG-R 156
Query: 114 GTQRLPRLVGKSVAKDIIFTGRK--VSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
R+ R++ +S+A + G+ +S + A LGL++ V + +A EIA +N
Sbjct: 157 ELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSN 216
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 1e-55
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 9/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------PSEIHFYVN 53
++ K IS D+ V+I + K FC+GAD K + P+ +
Sbjct: 52 VMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRSME 110
Query: 54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG-A 112
L L + P IA I+GAA+GGGL +ALACD+R+ + A +
Sbjct: 111 LLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASEL 170
Query: 113 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
G + LPR +G S A DI+ TGR V +A +GLV+ V + + I + I
Sbjct: 171 GLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERI 226
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-55
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 7/171 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ +GL A + + + +V +I + FCAG DLK R
Sbjct: 35 VSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLKAFVSGEAVLSE------RGLGF 87
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
P IA ++G AL GG E+ L+CDL + G +A G+PE ++ GAGG RLP
Sbjct: 88 TNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPN 147
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+ VA ++ TG + +DA G +N V GQA ALE+A +I
Sbjct: 148 RIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITAN 198
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 3e-55
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 6/185 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVP-----KVFCAGADLKERRQMSPSEI-HFYVNT 54
+ L AF ED+ VV++ + P FC+G D R + +
Sbjct: 38 TVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLN 97
Query: 55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGG 114
+ + ++P IA++ G A+GGG + L CDL I + A+ G + G G
Sbjct: 98 VLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFG 157
Query: 115 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS 174
+ L R+VG+ A++I + R+ S ++A +G+VN VP + + + ++ A+EI K
Sbjct: 158 SSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPL 217
Query: 175 VFRIL 179
R L
Sbjct: 218 AIRCL 222
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 4e-55
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 6/172 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ----MSPSEIHFYVNTLR 56
++R ++ A T + D S +V++ + VFC G D + E +R
Sbjct: 34 VMREVQSALSTAAADDSK-LVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIR 91
Query: 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 116
+ + P I ++G A+G G + CD+ E A P T P T
Sbjct: 92 NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTV 151
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
P+++G + A +++ +GRK++ ++A GLV+ G + + +E+
Sbjct: 152 MFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKEL 203
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 8e-55
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 5/170 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHF--YVNTLRST 58
+ GL ++ +++D +A +I + + F AG D +++S + R
Sbjct: 56 LHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDGREI 114
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
+ IP +A ++G A+G G + D+ E A L P + ++ GG
Sbjct: 115 VLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTW 174
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
P + +AK+ TG ++S + A+ LGL N+ +A+ A++I
Sbjct: 175 PLHISLLLAKEYALTGTRISAQRAVELGLANHVAD--DPVAEAIACAKKI 222
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 1e-54
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M + A + D + V+I + + FCAG DL + +
Sbjct: 31 MNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMDHG-DVLRSRYAPMMK 88
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L L P +A ++GAA G G+ +ALACD R+ E A + ++P AG LPR
Sbjct: 89 ALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPR 148
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
LVG++ A ++ G KV+ ++A +LGL +P + + + A+ +
Sbjct: 149 LVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERL 196
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-54
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 5/173 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRST 58
+ + A + ++ VV++R + F AG D+K+ P+
Sbjct: 33 LYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVL 91
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
L P I + G A+G G+ + L DL AL +P L + P G +Q L
Sbjct: 92 LKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLL 151
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+ G A +++FT +K + + A+ GLVN V A A AQ +
Sbjct: 152 VKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVEDAYAT--AQATAQHLTAL 202
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 3e-54
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTF 59
+ A ++D VV++ S + F AG DL E + R
Sbjct: 34 LYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFRGLI 92
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
L P P I ++G +G G + DL A L P T L + P A + LP
Sbjct: 93 KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLP 152
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+LVG+ A ++ + + ++A+ +GLV + +A A+ + K
Sbjct: 153 QLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAK 204
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 4e-54
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ R L A++ + +D + V+++ + P FC+GA + + + +
Sbjct: 35 LGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAP-RNPDFSASPVQP 92
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L P IA ++G A+G G+ +AL D+RI E +P+ + P A LPR
Sbjct: 93 AAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPR 152
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
LVG +VA +++ TG S + A+ GL N +PAG+ AL +A +I
Sbjct: 153 LVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDI 200
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 5e-54
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 5/174 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRS 57
+L ++ ++ D++ V++++++ K F AGADL + M + E L +
Sbjct: 32 LLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEENLEDSLVLGN 90
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
+ P PTIA++ GAA GGG +A ACD+ I +A E L +IP A +
Sbjct: 91 LMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIP-AVISPY 149
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+ R +G+ AK + + A SL LV + VP L+ A +I+
Sbjct: 150 VVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNN 203
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-53
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKER----RQMSPSEIHFYVNTLR 56
+++ + +A + + D S +V+ ++ VFC G D R + V+T++
Sbjct: 52 VIKEIVNALNSAAADDSK-LVLFSAA-GSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIK 109
Query: 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 116
+ + P + ++G A+G G + CDL E A P T P +
Sbjct: 110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSI 169
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
P+++GK+ A +++ GRK++ ++A + GLV+ G + + +E+
Sbjct: 170 TFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 1e-53
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 6/173 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-----IHFYVNTL 55
++ + A ED S VMI + FCAG L+E
Sbjct: 31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWW 89
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
+ + P +A I+G A GGGL ++LA D+ IC ++A + I +
Sbjct: 90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATS 149
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
L R+VG A +++ T R + ++A GLV+ P + + A ++A+E+
Sbjct: 150 YSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVAREL 202
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 2e-53
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 25/195 (12%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVP--------KVFCAGADLKERRQMSPSEIHF-- 50
+ ++ A + D V ++R V +VF AG +LK Q S + F
Sbjct: 195 QVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLM 254
Query: 51 --------------YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA 96
N R + + P +A +DG A+GGG ++ L D +
Sbjct: 255 RRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSD 314
Query: 97 ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156
A LP IIPG RL R G V++ +I GR++ K+ + LV+ V +
Sbjct: 315 AYFSLPAAKEGIIPG-AANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDE 373
Query: 157 AQLKALEIAQEINQK 171
++
Sbjct: 374 LDAAIERSLTRLDGD 388
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 2e-52
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 10/178 (5%)
Query: 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
+ L A + I E V++ S +VFC+GA++ + + + T
Sbjct: 59 VDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETR 118
Query: 60 SFLE----ALPIPTIAVIDGAALGGGLEMALACDLRIC--GEAALLGLPETG-LAIIPGA 112
+ LE + +A ++GA GGG E+ALACD ++ + LPE L ++PG
Sbjct: 119 NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGT 178
Query: 113 GGTQRL--PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
GG R+ R V A V G+ A + LV+ V Q A E+
Sbjct: 179 GGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALEL 236
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 8e-13
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 13/166 (7%)
Query: 1 MLRGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF 59
R A ++ + + + R+ AD + + + LR T
Sbjct: 309 FAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTL 368
Query: 60 SFLEALPIPTIAVID-GAALGGGL-EMALACDLRIC-------GEAALLGLPETGLAIIP 110
+ ++ A+I+ G+ G E+A A D E + L E + P
Sbjct: 369 ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYP 428
Query: 111 GAGGTQRLP-RLVGKSVAKDIIF--TGRKVSGKDAMSLGLVNYYVP 153
RL R ++ D + G+ + +A LGLV
Sbjct: 429 MVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPD 474
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 1e-51
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+L L A+ +ED+ +V+++R++ K F AG DL+ + ++ S
Sbjct: 48 LLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRY 106
Query: 61 F-----LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
+P P+IA + G + GGL + CDL I E AL P + I G
Sbjct: 107 LEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI--GGVEY 164
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+G AK+I+FTGR ++ ++ G+VN VP + + +A EI +
Sbjct: 165 HGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKM 220
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-51
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
ML L D S V++ + + FC+G DL ++
Sbjct: 34 MLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDTAGAAD------AANRVVR 86
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ +LP P IA + GAA+G G +ALACDL + A+ L T + ++P G + LP
Sbjct: 87 AITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPL 146
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
L+G++ + T K+S A G++++ A + + ++ + +
Sbjct: 147 LIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSV 194
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-51
Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRST-F 59
ML+ L+ ++ + V++I + VF +G DLKE + + H V S
Sbjct: 61 MLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVM 119
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
+ P+P IA+++G A G ++ +CD+ + + + P + + G L
Sbjct: 120 MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LA 178
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 178
R V + VA +++FTG +S ++A+ GL++ VP + Q + + IA++I + V +
Sbjct: 179 RAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSL 237
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 4e-51
Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 4/176 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE---RRQMSPSEIHFYVNTLRS 57
+L LK +E + ++I + F G D+ ++ + E ++
Sbjct: 35 VLYNLKSNYEEALSRNDVKAIVITGA-KGRFSGGFDISGFGEMQKGNVKEPKAGYISIDI 93
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
LEA P++A IDG ALGGGLE+A+AC RI AA LGLPE L +IPG GGTQR
Sbjct: 94 ITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQR 153
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQ 173
LPRLVG + A ++I T + V ++ SLGL++ VP + A A +I + +
Sbjct: 154 LPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRK 209
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 9e-51
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 9/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--------PSEIHFYV 52
+ G A + D V+++ + FCAGA L + + +
Sbjct: 58 LAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDANLAD 116
Query: 53 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGA 112
F+ L P IA I+G +G GL AL CD+R A +I
Sbjct: 117 LVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEF 176
Query: 113 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
G + LPRL +VA D++ +GR ++A LGLV V Q +ALE A++I
Sbjct: 177 GISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDI 232
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-50
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 6/173 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR----QMSPSEIHFYVNTLR 56
L+ +S + +++ + FC+G D+ E M + + +
Sbjct: 45 AYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMDTARLLDFNRMTG 103
Query: 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG-AGGT 115
+ P P IA + G A G G +ALA D R+ + T + + G G
Sbjct: 104 QVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAA 163
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
LPR+VG A ++ G V +A +GL++ G+A A +A+ +
Sbjct: 164 YLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRL 216
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-50
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE------IHFYVNT 54
M+ L A D +V++I ++FCAG DLKE + +
Sbjct: 34 MIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEA 92
Query: 55 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGG 114
+ L P PTIA+++G A GL++ ACDL AA LP
Sbjct: 93 CSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPA 152
Query: 115 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS 174
+ R++G+ ++ TG A++ GL+N +P ++A + + Q+
Sbjct: 153 V-AVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQA 211
Query: 175 VFRI 178
R
Sbjct: 212 PLRR 215
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 1e-49
Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 18/189 (9%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKV------FCAGADLKERRQMSPSEIHFYVNT 54
+ L + VV++ + P FC+G D + R +
Sbjct: 85 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTAD 144
Query: 55 LRS-----------TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLP 102
+ +P I +++G A GGG + + CDL + E A
Sbjct: 145 TVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQT 204
Query: 103 ETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162
+ + G G+ L R VG+ A++I F GR + + +G VN + + L
Sbjct: 205 DADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGL 264
Query: 163 EIAQEINQK 171
+ A EIN K
Sbjct: 265 QWAAEINAK 273
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 2e-49
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 3/179 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYV-NTLRSTF 59
ML L AF T++ED S V++ +S K FCAG DLKE R E + +
Sbjct: 54 MLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVM 112
Query: 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 119
++ LP P IA + G A G ++ CDL + A + + + G L
Sbjct: 113 LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVA-LS 171
Query: 120 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 178
R VG+ A +++ TG VS DA LGLVN V + + +I K ++ +
Sbjct: 172 RNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAM 230
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 4e-49
Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 6/172 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M + A + S+D S ++ + + + +G DL + P +
Sbjct: 54 MYHEIMRALKAASKDDS--IITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLR 111
Query: 61 -FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 116
F+ P P IAV++G A+G + + D + A P + L P +
Sbjct: 112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSY 171
Query: 117 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
P+++ + A +++ G+K++ +A + GLV P Q + +
Sbjct: 172 TFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAF 223
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-48
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE---RRQMSPSEIHFYVNTLRS 57
L L+ A + I D+S V++ S VF GAD+ E ++ +E+
Sbjct: 36 TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANK 94
Query: 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
FS E L +PT+A I+G ALGGGLEM LA D R+ ++A +GLPE L I PG GGT R
Sbjct: 95 IFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVR 154
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168
LPRL+G A + I +G++ +DA+ + V+ V A + AL++ +
Sbjct: 155 LPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRA 205
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 2e-48
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++R +++ + D + ++I + FCAGAD+ +P L S
Sbjct: 48 VIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGL------ALGSLVD 100
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
++ P +A I G ALGGGLE+AL C RI A +GLPE L I+PGA GTQ LPR
Sbjct: 101 EIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPR 160
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
+VG VA D+I +G+ +S +A+ LG+++ V + + +A++ AQ+I K
Sbjct: 161 VVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE-EAIKFAQKIIDK 210
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 8e-47
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 5/164 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS--EIHFYVNTLRST 58
++ E S+ VV++ P+VFC GAD +E Q + L
Sbjct: 35 LIEECLQVLNQC-ETSTVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQASSQEPLYDL 92
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
+ L+ P TI+ + G GGL A D+ I + A L E + P A L
Sbjct: 93 WMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYP-ACVLPFL 151
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162
R +G+ A + + +S ++A GL++ + L+
Sbjct: 152 IRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKH 195
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-43
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 15/188 (7%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI--------HFYV 52
L E + +I+SS + F +GAD K + + +
Sbjct: 37 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVS 95
Query: 53 NTLRSTFSFLEAL---PIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAI 108
N + +A I ++G A+G + CD+ + L P L +
Sbjct: 96 NFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGL 155
Query: 109 IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL--EIAQ 166
I G T LP G + + + + G ++ + +A ++ +
Sbjct: 156 ITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLE 215
Query: 167 EINQKVQS 174
E+ +KV+
Sbjct: 216 ELREKVKG 223
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 4e-43
Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 34/198 (17%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---------------- 44
L E D +V+++ + FCAG DL + S
Sbjct: 63 TPLELSALVERADLDPDVHVILVSGR-GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSG 121
Query: 45 --------------PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL 90
P + ++ F+ L PT+ I G + GG ++AL D
Sbjct: 122 KTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQ 181
Query: 91 RICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150
I A +G P + +P AG +G AK ++FTG ++G A GL
Sbjct: 182 VIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVE 238
Query: 151 YVPAGQAQLKALEIAQEI 168
+ + + I
Sbjct: 239 APDPADLDARTERLVERI 256
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 1e-42
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 9/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKE-RRQMSPSEIHFYVNTLRSTF 59
++ L S D + VV++ + FCAGADL E SPS +
Sbjct: 39 LVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGGSPSSAYDMAVERAREM 97
Query: 60 SFL----EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
+ L +P IA IDG GG + ACD+ + G + L E + + P
Sbjct: 98 AALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISL 157
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
LP+L + A TG K + A +GL+ + A ++ ++ +
Sbjct: 158 TLLPKLSAR-AAARYYLTGEKFDARRAEEIGLIT--MAAEDLDAAIDQLVTDVGRG 210
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-28
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M+R + + +D +++I+ + K FCAG D++ + ++ R +
Sbjct: 34 MIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM 93
Query: 61 F---LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
+ + P +A+I G +GGG+ +++ R+ E L +PET + + P GG
Sbjct: 94 LNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYF 153
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163
LPRL GK + + TG ++ G+D G+ ++V + +L LE
Sbjct: 154 LPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDS--EKLAMLE 196
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-27
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 10/170 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
M+R + +D V++ S K FCAG D++ S + + F
Sbjct: 70 MVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFE 129
Query: 61 -------FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 113
L P + DG +GGGL + ++ E + + +PE + + P G
Sbjct: 130 EEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVG 189
Query: 114 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163
G+ L R+ GK + + T ++ DA +GL ++Y+ + +
Sbjct: 190 GSYFLNRMPGK-MGLFLGLTAYHMNAADACYVGLADHYLNR--DDKELMF 236
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 180 | |||
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.89 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.88 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.84 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.74 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.67 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.63 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.63 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.41 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 99.18 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 99.17 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 99.17 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 99.14 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 99.05 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 99.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 98.96 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.72 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.43 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.28 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 98.13 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 98.06 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.95 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.81 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.8 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.8 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.74 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.69 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.62 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 97.6 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.53 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.3 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 97.24 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 97.24 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 97.19 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 96.94 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 96.92 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 96.91 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 96.46 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 95.23 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 91.15 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 82.96 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 82.65 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 81.82 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 80.96 |
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=302.89 Aligned_cols=178 Identities=27% Similarity=0.448 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. ++.||+|.|++++...... ...+.+.++.++..+.++||||||+|||+|+||
T Consensus 28 m~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 105 (254)
T 3hrx_A 28 LLDALYAALKEGEEDREVRALLLTGA-GRAFSAGQDLTEFGDRKPD-YEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGA 105 (254)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGTTTSCCC-HHHHTHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCC-CCCcccCccHHHhcccchh-hHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeh
Confidence 68899999999999999999999998 8999999999998654333 344556778899999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..+++++++||++++|+||+++||||+++|++++.++
T Consensus 106 G~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~ 185 (254)
T 3hrx_A 106 GMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEE 185 (254)
T ss_dssp HHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH
T ss_pred hhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 186 a~~~a~~la~~~~~a~~~~K 205 (254)
T 3hrx_A 186 ALSLAKELAQGPTRAYALTK 205 (254)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHHHH
Confidence 99999999999999998876
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=302.81 Aligned_cols=180 Identities=47% Similarity=0.791 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.|+++||+|.|++++...+......+.+.++.++.++.++||||||+|||+|+|+
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 116 (265)
T 3kqf_A 37 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGG 116 (265)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999999559999999999987766666666777888999999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 117 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 196 (265)
T 3kqf_A 117 GTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEK 196 (265)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH
T ss_pred HHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 197 a~~~a~~la~~~p~a~~~~K 216 (265)
T 3kqf_A 197 AIEIAEKIASNGPIAVRLAK 216 (265)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-48 Score=302.82 Aligned_cols=179 Identities=23% Similarity=0.381 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh----hHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP----SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||. |+.||+|.|++++..... +....+.+.++.++..+.++||||||+|||+
T Consensus 43 m~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 121 (274)
T 4fzw_C 43 MHAQLAECLKQVERDDTIRCLLLTGA-GRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGV 121 (274)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 67899999999999999999999999 799999999998754322 2234445566788999999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|+++
T Consensus 122 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~ 201 (274)
T 4fzw_C 122 AAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDET 201 (274)
T ss_dssp EETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGG
T ss_pred eeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.+++++++++||.+++.+|
T Consensus 202 l~~~a~~~a~~la~~~~~a~~~~K 225 (274)
T 4fzw_C 202 LADTAQQLARHLATQPTFGLGLIK 225 (274)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999876
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=298.08 Aligned_cols=179 Identities=36% Similarity=0.590 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++..... .....+.+..+.++.++.++||||||+|||+|+|
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (261)
T 3pea_A 33 VMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALG 111 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 57899999999999999999999998 699999999999876544 2334445556778899999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 191 (261)
T 3pea_A 112 GGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLD 191 (261)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 192 ~a~~~a~~la~~~~~a~~~~K 212 (261)
T 3pea_A 192 DTLKVAKQIAGKSPATARAVL 212 (261)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=301.58 Aligned_cols=179 Identities=29% Similarity=0.484 Sum_probs=170.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++|+.++.|+++++|||||. +++||+|.|++++..........+.+.++.++.++.++||||||+|||+|+|+
T Consensus 51 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 129 (277)
T 4di1_A 51 VYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGA 129 (277)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehh
Confidence 57899999999999999999999998 89999999999988766666666677788899999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 130 G~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~ 209 (277)
T 4di1_A 130 GLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDS 209 (277)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 210 a~~~a~~la~~~~~a~~~~K 229 (277)
T 4di1_A 210 AVAWARRYLECPPRALAAAK 229 (277)
T ss_dssp HHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=299.27 Aligned_cols=177 Identities=36% Similarity=0.567 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++....... .+.+....++.++.++||||||+|||+|+|+
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T 4fzw_A 33 LLMQLVNELEAAATDTSISVCVITGN-ARFFAAGADLNEMAEKDLAA--TLNDTRPQLWARLQAFNKPLIAAVNGYALGA 109 (258)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEEECBCHHHHHTCCHHH--HHTCSHHHHHHHHHTCCSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEeCC-CCceeCCCchhhhccchhhh--HHHhHHHHHHHHHHHCCCCEEEEEcCcceee
Confidence 57899999999999999999999998 79999999999876543322 2234456788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+.++++++++++|..+++++++||++++|+||+++||||+|+|++++.++
T Consensus 110 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~ 189 (258)
T 4fzw_A 110 GCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEY 189 (258)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHH
T ss_pred eeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHCCCeeEEeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 190 a~~~a~~la~~~p~a~~~~K 209 (258)
T 4fzw_A 190 ALQLASKMARHSPLALQAAK 209 (258)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=293.04 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=165.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.| ++++|||||. |++||+|.|++++...+......+.+..++++.++.++||||||+|||+|+|+
T Consensus 32 ~~~~L~~al~~~~~d-~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (233)
T 3r6h_A 32 MQQALNEAIDAADRD-NVGALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAM 109 (233)
T ss_dssp HHHHHHHHHHHHHHH-TCSEEEEECC-SSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhC-CCeEEEEECC-CCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcchHH
Confidence 578999999999987 6899999998 79999999999987755555566777788899999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 189 (233)
T 3r6h_A 110 GAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSR 189 (233)
T ss_dssp HHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEECCGGGHHHH
T ss_pred HHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 190 a~~~a~~la~~~~~a~~~~K 209 (233)
T 3r6h_A 190 AEEAAREFAGLNQQAHNATK 209 (233)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=298.28 Aligned_cols=179 Identities=21% Similarity=0.339 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCce-EecCCcccccc----CChhHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVF-CAGADLKERRQ----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F-~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++.|+++++|||||. |+.| |+|.|++++.. ........+.+.+++++.++.++||||||+|||
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 110 (263)
T 3lke_A 32 LGTSLLEAIRAGNNETSIHSIILQSK-HRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALING 110 (263)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEES-CTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcC-CCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 57899999999999999999999999 5777 99999999865 344445566777888999999999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC-C
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP-A 154 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~-~ 154 (180)
+|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++| +
T Consensus 111 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 190 (263)
T 3lke_A 111 YAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENK 190 (263)
T ss_dssp EEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEESSH
T ss_pred EeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCCcEecCCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 155 GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 155 ~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++.++++++++.||.+++.+|
T Consensus 191 ~~l~~~a~~~a~~la~~~~~a~~~~K 216 (263)
T 3lke_A 191 QELQERVKNYLKAVSEGYVPAIAATK 216 (263)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999887
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=296.54 Aligned_cols=180 Identities=28% Similarity=0.349 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++...+......+.+.+++++.++.++||||||+|||+|+|+
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 111 (260)
T 1sg4_A 32 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAG 111 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehH
Confidence 57899999999999999999999998679999999999986544444445556678889999999999999999999999
Q ss_pred hHHHHhhCCEEEEc--CCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 81 GLEMALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 81 G~~l~~~~D~~i~~--~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 112 G~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~vv~~~~l~ 191 (260)
T 1sg4_A 112 GCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 191 (260)
T ss_dssp HHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHH
T ss_pred HHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCEecCHHHHH
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 192 ~~a~~~a~~la~~~~~a~~~~K 213 (260)
T 1sg4_A 192 STALSAIAQWMAIPDHARQLTK 213 (260)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=298.43 Aligned_cols=177 Identities=32% Similarity=0.519 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.+ |+++++|||||. |+.||+|.|++++...+......+.+.++.++.++.++||||||+|||+|+|+
T Consensus 44 ~~~~L~~al~~~--d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 120 (275)
T 3hin_A 44 LMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGG 120 (275)
T ss_dssp HHHHHHHHTSSC--CTTCCEEEEEES-SSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHh--CcCceEEEEECC-CCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 578999999988 689999999998 68999999999987765555555667778899999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 121 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~ 200 (275)
T 3hin_A 121 GLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDK 200 (275)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 201 a~~~a~~ia~~~p~a~~~~K 220 (275)
T 3hin_A 201 ALELGNRVAQNAPLTNFAVL 220 (275)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-47 Score=296.36 Aligned_cols=178 Identities=27% Similarity=0.400 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++... ...........++.++.++.++||||||+|||+|
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 110 (268)
T 3i47_A 32 LLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAA 110 (268)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEEC-SSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 57899999999999999999999998 6999999999987642 2223334456677889999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++++ ++++++|..++++++++|++++|+||+++||||+|+|++++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l 189 (268)
T 3i47_A 111 FGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTL 189 (268)
T ss_dssp ETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGH
T ss_pred EhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEeeChhHH
Confidence 99999999999999999999999999999999999877 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.+++++|+++||.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (268)
T 3i47_A 190 LEFTLKYASQISNNAPEAVKNSK 212 (268)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999887
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-47 Score=298.36 Aligned_cols=179 Identities=30% Similarity=0.436 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-------HHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-------EIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++...... ....+.+.++.++.++.++||||||+|
T Consensus 52 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 130 (290)
T 3sll_A 52 VMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAI 130 (290)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEECC-CCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57899999999999999999999999 6999999999988654321 134556677889999999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCC-cchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceec
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG-AGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 152 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~-~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~ 152 (180)
||+|+|+|++|+++||+||++++++|++||+++|++|+ +|++++|++++|..++++++++|++++|+||+++||||+|+
T Consensus 131 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv 210 (290)
T 3sll_A 131 NGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKV 210 (290)
T ss_dssp CSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred CCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 153 PAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 153 ~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|++++.+++.+++++|++.||.+++.+|
T Consensus 211 ~~~~l~~~a~~~a~~la~~~~~a~~~~K 238 (290)
T 3sll_A 211 ASESLLEECYAIGERIAGFSRPGIELTK 238 (290)
T ss_dssp CGGGHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999876
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=297.91 Aligned_cols=179 Identities=26% Similarity=0.348 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.... ......+.+.+++++.++.++||||||+|||+|+
T Consensus 41 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 119 (272)
T 3qk8_A 41 MHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAV 119 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEES-SSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 57899999999999999999999998 69999999999875432 2223345667788999999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~ 199 (272)
T 3qk8_A 120 GAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVL 199 (272)
T ss_dssp HHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred hHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++++|++++|.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (272)
T 3qk8_A 200 PTATRLAENLAQGAQNAIRWTK 221 (272)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=304.21 Aligned_cols=180 Identities=29% Similarity=0.426 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-----HHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-----EIHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++...... ......+.++.++.++.++||||||+|||
T Consensus 36 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G 115 (287)
T 3gkb_A 36 MMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAG 115 (287)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5789999999999999999999999966899999999987642210 00111234567888999999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcC-CeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 76 AALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~-~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+|+|+|++|+++||+||+++ +++|++||+++|++|++|++++|++++|..+++++++||++++|+||+++||||+|+|+
T Consensus 116 ~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~ 195 (287)
T 3gkb_A 116 KARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195 (287)
T ss_dssp EEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred eeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 155 GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 155 ~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++.+++++|++.||.+++.+|
T Consensus 196 ~~l~~~a~~lA~~la~~~p~a~~~~K 221 (287)
T 3gkb_A 196 DELDEYVDRVARNIAALPDGVIEAAK 221 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999876
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-47 Score=296.68 Aligned_cols=179 Identities=25% Similarity=0.357 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHH-HHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEI-HFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.... .... ..+.+.++.++.++.++||||||+|||
T Consensus 31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 109 (269)
T 1nzy_A 31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAING 109 (269)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 57899999999999999999999998 69999999999986542 1111 234455778889999999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++
T Consensus 110 ~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 189 (269)
T 1nzy_A 110 VAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189 (269)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHH
T ss_pred eeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.++++++++++|.+++.+|
T Consensus 190 ~l~~~a~~~a~~la~~~p~a~~~~K 214 (269)
T 1nzy_A 190 EFREVAWKVARELAAAPTHLQVMAK 214 (269)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999998876
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=293.85 Aligned_cols=179 Identities=35% Similarity=0.592 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHH-HHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTL-RSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||+.+++||+|.|++++.. .......+.+.+ ++++.++.++||||||+|||+|+|
T Consensus 36 ~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 114 (265)
T 2ppy_A 36 FYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-ADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVG 114 (265)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SCHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEee
Confidence 578999999999999999999999933799999999998765 222233344556 788899999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCe-EEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 80 GGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~-~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
+|++|+++||+||+++++ +|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 115 gG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~ 194 (265)
T 2ppy_A 115 GGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194 (265)
T ss_dssp HHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHH
T ss_pred HHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.+|.+++.+|
T Consensus 195 ~~a~~~a~~la~~~~~a~~~~K 216 (265)
T 2ppy_A 195 ERTREYARKLANSATYAVSNIK 216 (265)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=293.64 Aligned_cols=178 Identities=25% Similarity=0.401 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC------ChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM------SPSEIHFYVNTLRSTFSFLEALPIPTIAVID 74 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~ 74 (180)
|+.+|.++++.++.|+++|+|||||. +++||+|.|++++... .......+.+.++.++.++.++||||||+||
T Consensus 34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (263)
T 3l3s_A 34 MIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVE 112 (263)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEEEEES
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57899999999999999999999999 6999999999998754 2334455677788899999999999999999
Q ss_pred CccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 75 GAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 75 G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
|+|+|+|++|+++||+||++++++|++||+++|++ +++++++|++++|..++++++++|++++|+||+++||||+++|+
T Consensus 113 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~ 191 (263)
T 3l3s_A 113 GIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPE 191 (263)
T ss_dssp SEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEECCH
T ss_pred CEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence 99999999999999999999999999999999999 56789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 155 GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 155 ~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++.+++++++++||.+++.+|
T Consensus 192 ~~l~~~a~~~a~~la~~~~~a~~~~K 217 (263)
T 3l3s_A 192 AALATHVADLAGALAARNQAPLRRGL 217 (263)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999887
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-47 Score=295.42 Aligned_cols=177 Identities=36% Similarity=0.556 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++....... .+.+.++.++.++.++||||||+|||+|+|+
T Consensus 38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (263)
T 3moy_A 38 LEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQ--ARERNLLSGWDSLTQVRKPIVAAVAGYALGG 114 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEEESBCHHHHTTCCHHH--HHHTTTTHHHHHHTTCCSCEEEEECBEEETH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeeCCcChHHHhccCchh--HHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence 57899999999999999999999996 89999999999987654433 2244556788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 115 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 194 (263)
T 3moy_A 115 GCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDE 194 (263)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHH
T ss_pred HHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 195 a~~~a~~la~~~~~a~~~~K 214 (263)
T 3moy_A 195 ALAVAQRIARMSRPAGRAVK 214 (263)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=292.61 Aligned_cols=177 Identities=27% Similarity=0.454 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHH-HHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++....... .+.+ .+++++.++.++||||||+|||+|+|
T Consensus 31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 107 (257)
T 2ej5_A 31 MNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMDHG--DVLRSRYAPMMKALHHLEKPVVAAVNGAAAG 107 (257)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCC-------CHH--HHHHHTHHHHHHHHHHCCSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCcCHHHHhhccchh--HHHHHHHHHHHHHHHhCCCCEEEEECccccc
Confidence 57899999999999999999999998 79999999999876533211 1112 25678889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 187 (257)
T 2ej5_A 108 AGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEE 187 (257)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEECGGGHHH
T ss_pred hhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceecChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 188 ~a~~~a~~la~~~~~a~~~~K 208 (257)
T 2ej5_A 188 EVKQFAERLSAMPTKAIGLIK 208 (257)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=292.63 Aligned_cols=178 Identities=25% Similarity=0.328 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEe-CCCCceEecCCccccccCChhHH-HHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRS-SVPKVFCAGADLKERRQMSPSEI-HFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g-~~~~~F~~G~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++||||| . +++||+|.|++++......+. ..+.+.+++++.++.++||||||+|||+|+
T Consensus 28 ~~~~l~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~ 106 (250)
T 2a7k_A 28 LETSVKDALARANADDSVRAVVVYGGA-ERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAI 106 (250)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECCT-TSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECCC-CCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEe
Confidence 5789999999999999999999999 6 799999999998765432222 344456778889999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+++++ +|++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 107 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~ 185 (250)
T 2a7k_A 107 GMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185 (250)
T ss_dssp THHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHH
T ss_pred HHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCcceecCHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 186 ~~a~~~a~~la~~~~~a~~~~K 207 (250)
T 2a7k_A 186 DAAITQAHVMASYPASAFINTK 207 (250)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998876
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=296.11 Aligned_cols=179 Identities=21% Similarity=0.348 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh----hHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP----SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... .....+.+.++.++.++.++||||||+|||+
T Consensus 45 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 123 (279)
T 3g64_A 45 AYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGV 123 (279)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEC-SSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 57899999999999999999999998 699999999999864321 1233455667888999999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCcccccccc-CCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAII-PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~-p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
|+|+|++|+++||+||++++++|++||+++|++ |++|++++|++++|..++++++++|++++|+||+++||||+|+|++
T Consensus 124 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 203 (279)
T 3g64_A 124 AAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEG 203 (279)
T ss_dssp EETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTT
T ss_pred eccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCch
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.+++++|++.||.+++.+|
T Consensus 204 ~l~~~a~~~a~~la~~~~~a~~~~K 228 (279)
T 3g64_A 204 RADEAARTLARRLADGPALAHAQTK 228 (279)
T ss_dssp CHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999886
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=292.10 Aligned_cols=173 Identities=25% Similarity=0.430 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.. . .+.+.++.++.++.++||||||+|||+|+|+
T Consensus 34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~---~---~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 106 (255)
T 3p5m_A 34 MLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDT---A---GAADAANRVVRAITSLPKPVIAGVHGAAVGF 106 (255)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCEECC---CH---H---HHHHHHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCCChhhhcc---h---HHHHHHHHHHHHHHhCCCCEEEEeCCeehhh
Confidence 57899999999999999999999999 699999999998762 1 4456677889999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 186 (255)
T 3p5m_A 107 GCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESV 186 (255)
T ss_dssp HHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHH
T ss_pred HHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (255)
T 3p5m_A 187 LTDVLRSVSGGPTLAFGWTK 206 (255)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=294.83 Aligned_cols=178 Identities=25% Similarity=0.343 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++ +... +.+....+.+.+++++.++.++||||||+|||+|
T Consensus 38 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 115 (264)
T 1wz8_A 38 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFG-LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVA 115 (264)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCCcccCccc-cccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 57899999999999999999999998 69999999998 6442 1111223445677888999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 116 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 195 (264)
T 1wz8_A 116 VGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKV 195 (264)
T ss_dssp ETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGH
T ss_pred echhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeecChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 196 ~~~a~~~a~~la~~~~~a~~~~K 218 (264)
T 1wz8_A 196 YEKALEVAERLAQGPKEALHHTK 218 (264)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=297.61 Aligned_cols=179 Identities=23% Similarity=0.310 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++....... .......++.++.++.++||||||+|||+|+|
T Consensus 34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 112 (256)
T 3qmj_A 34 LYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVG 112 (256)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 57899999999999999999999998 69999999999875421111 01123345778899999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 113 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 192 (256)
T 3qmj_A 113 IGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLP 192 (256)
T ss_dssp HHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 193 ~a~~~a~~la~~~~~a~~~~K 213 (256)
T 3qmj_A 193 EARRHAEILAAKPISSLMAVK 213 (256)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=292.36 Aligned_cols=177 Identities=33% Similarity=0.599 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++...... ...+...+ +++.++.++||||||+|||+|+|+
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~-~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T 2pbp_A 33 MVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPI-RLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGG 109 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCCCHHHHHTCCHH-HHHHHCTT-HHHHHHHTCCSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccch-hHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhH
Confidence 57899999999999999999999998 7999999999987654321 22222333 667889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 189 (258)
T 2pbp_A 110 GFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEE 189 (258)
T ss_dssp HHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceeeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 190 a~~~a~~la~~~~~a~~~~K 209 (258)
T 2pbp_A 190 TMRLAGRLAEQPPLALRLIK 209 (258)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-46 Score=292.10 Aligned_cols=178 Identities=20% Similarity=0.326 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH----HHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.|+++ +|||||. |+.||+|.|++++....... ...+.+.+++++.++.++||||||+|||+
T Consensus 54 ~~~~L~~al~~~~~d~~v-~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 131 (280)
T 2f6q_A 54 MYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGP 131 (280)
T ss_dssp HHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhhCCCE-EEEEeCC-CCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 578999999999999999 9999998 79999999999986543222 12233456778889999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 132 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~ 211 (280)
T 2f6q_A 132 AVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 211 (280)
T ss_dssp EETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTT
T ss_pred eehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceEECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 212 l~~~a~~~a~~la~~~~~a~~~~K 235 (280)
T 2f6q_A 212 FQKEVWTRLKAFAKLPPNALRISK 235 (280)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=293.90 Aligned_cols=178 Identities=24% Similarity=0.430 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. ++.||+|.|++++.... ......+.+.+++++.++.++||||||+|||+|+|
T Consensus 61 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 139 (287)
T 2vx2_A 61 MLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATA 139 (287)
T ss_dssp HHHHHHHHHHTTTTCTTCCEEEEEES-SSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEc
Confidence 57899999999999999999999998 79999999999876432 22233445667788899999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|++++++ |++++|..++++++++|++++|+||+++||||+|+|++++.+
T Consensus 140 gG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~ 218 (287)
T 2vx2_A 140 AGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQE 218 (287)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceecCHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++++|++++|.+++.+|
T Consensus 219 ~a~~~a~~la~~~p~a~~~~K 239 (287)
T 2vx2_A 219 ETMRIARKIASLSRPVVSLGK 239 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998876
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=294.87 Aligned_cols=177 Identities=36% Similarity=0.589 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++....... .....+...+.++.++||||||+|||+|+|+
T Consensus 53 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 129 (278)
T 3h81_A 53 VMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFAD--AFTADFFATWGKLAAVRTPTIAAVAGYALGG 129 (278)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCBCSHHHHTCCHHH--HHHHTTTGGGHHHHTCCSCEEEEECBEEETH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCeecCcCHHHHhccChhh--HHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999996 89999999999987654433 1222222337789999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 130 G~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~ 209 (278)
T 3h81_A 130 GCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTE 209 (278)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH
T ss_pred HHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 210 a~~~a~~la~~~p~a~~~~K 229 (278)
T 3h81_A 210 ARATATTISQMSASAARMAK 229 (278)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-48 Score=300.23 Aligned_cols=179 Identities=23% Similarity=0.321 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHH-hcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. ++.||+|.|++++..........+.+.+++++.++ .++||||||+|||+|+|
T Consensus 40 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~G 118 (258)
T 3lao_A 40 MLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWT 118 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeEh
Confidence 57899999999999999999999999 67799999999886643322111122334556778 89999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 119 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 198 (258)
T 3lao_A 119 AGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELA 198 (258)
T ss_dssp HHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++++++++||.+++.+|
T Consensus 199 ~a~~~a~~la~~~~~a~~~~K 219 (258)
T 3lao_A 199 RALEYAERIARAAPLAVRAAL 219 (258)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=286.99 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+ ++|||||. |++||+|.|++++... ......+.+.++.++.++.++||||||+|||+|+|+
T Consensus 33 ~~~~L~~al~~~~~d~--~~vvltg~-g~~F~aG~Dl~~~~~~-~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 108 (232)
T 3ot6_A 33 VIIAFNAALDQAEKDR--AIVIVTGQ-PGILSGGYDLKVMTSS-AEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAK 108 (232)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEECB-TEEEECCBCHHHHHHC-HHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEETH
T ss_pred HHHHHHHHHHHHhcCC--CEEEEECC-CCCccCCcCHHHHhhC-hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehH
Confidence 5789999999999774 89999998 7999999999998763 344455667778899999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
|++|+++||+||++++ ++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 109 G~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~ 188 (232)
T 3ot6_A 109 GAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQG 188 (232)
T ss_dssp HHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEECTTTHHH
T ss_pred HHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCEecCHHHHHH
Confidence 9999999999999998 899999999999988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 189 ~a~~~a~~la~~~~~a~~~~K 209 (232)
T 3ot6_A 189 AALAVAAQLKKINMNAHKKTK 209 (232)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999887
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-47 Score=300.04 Aligned_cols=179 Identities=28% Similarity=0.405 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCcccccc---CChh-----HHHHHHHHHHHHHHHHhcCCCcEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ---MSPS-----EIHFYVNTLRSTFSFLEALPIPTIAV 72 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~kp~Ia~ 72 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++.. .... ....+....+.++..+.++||||||+
T Consensus 58 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 136 (298)
T 3qre_A 58 LAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAA 136 (298)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC-----------------------------CCTTGGGGSSSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57899999999999999999999999 699999999999764 2211 11222233455677889999999999
Q ss_pred ECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceec
Q 030277 73 IDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 152 (180)
Q Consensus 73 v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~ 152 (180)
|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+
T Consensus 137 V~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv 216 (298)
T 3qre_A 137 INGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVV 216 (298)
T ss_dssp ECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEE
T ss_pred ECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030277 153 PAGQAQLKALEIAQEINQK-VQSVFRILL 180 (180)
Q Consensus 153 ~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 180 (180)
|++++.+++.+++++|+++ +|.+++.+|
T Consensus 217 ~~~~l~~~a~~~A~~la~~~~p~a~~~~K 245 (298)
T 3qre_A 217 TPEQLMPRALEYAEDIARYCSPSSMAVIK 245 (298)
T ss_dssp CGGGHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999999 999999876
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-47 Score=298.88 Aligned_cols=180 Identities=28% Similarity=0.412 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHH---HHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH---FYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++......... .+.+.++.++.++.++||||||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 114 (289)
T 3h0u_A 35 VVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRA 114 (289)
T ss_dssp HHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 5789999999999999999999999966677888899988653222111 2334567888999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 78 LGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
+|+|++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 115 ~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~ 194 (289)
T 3h0u_A 115 RGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAE 194 (289)
T ss_dssp ETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHH
T ss_pred ehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHH
Confidence 9999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.+++++|++.||.+++.+|
T Consensus 195 l~~~a~~lA~~la~~~p~a~~~~K 218 (289)
T 3h0u_A 195 LDEFVAGIAARMSGFPRDALIAAK 218 (289)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999886
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-46 Score=293.28 Aligned_cols=178 Identities=30% Similarity=0.413 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC-ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... .......+.+.++.++.++.++||||||+|||+|+|
T Consensus 54 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 132 (286)
T 3myb_A 54 MLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATA 132 (286)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEC-SSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEET
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehH
Confidence 57899999999999999999999999 6999999999998763 233455667778889999999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++ +++++++|++++|..++++++++|++++|+||+++||||+|+|++++.+
T Consensus 133 gG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~ 211 (286)
T 3myb_A 133 AGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDD 211 (286)
T ss_dssp HHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHH
Confidence 999999999999999999999999999999 7788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 212 ~a~~~a~~la~~~p~a~~~~K 232 (286)
T 3myb_A 212 EIEAMVSKIVAKPRAAVAMGK 232 (286)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=292.59 Aligned_cols=180 Identities=47% Similarity=0.797 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++..........+.+.+++++.++.++||||||+|||+|+|+
T Consensus 40 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 119 (272)
T 1hzd_A 40 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG 119 (272)
T ss_dssp HHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEec
Confidence 57899999999999999999999998558999999999876554444444556677889999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH---
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA--- 157 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~--- 157 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 120 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 199 (272)
T 1hzd_A 120 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDA 199 (272)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCH
T ss_pred HHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 -QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 -~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++++|.+++.+|
T Consensus 200 ~~~~a~~~a~~la~~~p~a~~~~K 223 (272)
T 1hzd_A 200 AYRKALDLAREFLPQGPVAMRVAK 223 (272)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56789999999999999998876
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=292.87 Aligned_cols=177 Identities=22% Similarity=0.350 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC--ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++... +......+.+.++.++.++.++||||||+|||+|+
T Consensus 56 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 134 (276)
T 3rrv_A 56 LHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAV 134 (276)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECceee
Confidence 57899999999999999999999999 6999999999987653 22334455667788999999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++ +++.
T Consensus 135 GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~ 212 (276)
T 3rrv_A 135 GLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212 (276)
T ss_dssp THHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHH
T ss_pred HHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 213 ~~a~~~A~~la~~~~~a~~~~K 234 (276)
T 3rrv_A 213 AEAIACAKKILELPQQAVESTK 234 (276)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999876
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=291.12 Aligned_cols=178 Identities=33% Similarity=0.497 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... ...........+++++.++.++||||||+|||+|
T Consensus 27 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 105 (253)
T 1uiy_A 27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA 105 (253)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 57899999999999999999999998 6999999999987643 2221111111267788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++| +++|++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 106 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 184 (253)
T 1uiy_A 106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKA 184 (253)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCH
T ss_pred eHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecChhHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 185 ~~~a~~~a~~la~~~~~a~~~~K 207 (253)
T 1uiy_A 185 LEEAKALAEEVAKNAPTSLRLTK 207 (253)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999998876
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=293.48 Aligned_cols=180 Identities=27% Similarity=0.421 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEe-----CCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRS-----SVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVID 74 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g-----~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~ 74 (180)
|+.+|.++++.++.|+++++||||| .|+++||+|.|++++....... .......++.++..+.++||||||+||
T Consensus 38 ~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 117 (275)
T 4eml_A 38 TVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVA 117 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5789999999999999999999999 7557999999999876421111 111111346778889999999999999
Q ss_pred CccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 75 GAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 75 G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
|+|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|+
T Consensus 118 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~ 197 (275)
T 4eml_A 118 GYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPV 197 (275)
T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred CeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 155 GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 155 ~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++.+++++|+++||.+++.+|
T Consensus 198 ~~l~~~a~~~a~~la~~~~~a~~~~K 223 (275)
T 4eml_A 198 DRLEEEGIQWAKEILSKSPLAIRCLK 223 (275)
T ss_dssp GGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999887
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=292.85 Aligned_cols=179 Identities=29% Similarity=0.537 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC-------Chh----HHHHHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-------SPS----EIHFYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++... +.. ....+.+.+++++..+.++||||
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 110 (275)
T 1dci_A 32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV 110 (275)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999998 6999999999887542 100 12233445677888999999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCH-HHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK-SVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~-~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|. .+++++++||++++|+||+++|||
T Consensus 111 IAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv 190 (275)
T 1dci_A 111 IAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190 (275)
T ss_dssp EEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSS
T ss_pred EEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ceecCC-chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 149 NYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 149 ~~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|+++|+ +++.+++.++++++++++|.+++.+|
T Consensus 191 ~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K 223 (275)
T 1dci_A 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSK 223 (275)
T ss_dssp SEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ceecCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999 99999999999999999999998876
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=292.93 Aligned_cols=176 Identities=24% Similarity=0.335 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccc---cCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR---QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++. ....... .....++.++.++.++||||||+|||+|
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kPvIAav~G~a 110 (266)
T 3fdu_A 33 LYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAGP-AGQVPPFVLLKSAARLSKPLIIAVKGVA 110 (266)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHHHHHHSCCCSC-GGGSHHHHHHHHHHHCCSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCeECCcCHHHHhhhccccchhh-HHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 57899999999999999999999998 69999999999886 3322210 1223456788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++| ++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l 188 (266)
T 3fdu_A 111 IGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVE--DA 188 (266)
T ss_dssp ETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEECS--CH
T ss_pred ehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.||.+++.+|
T Consensus 189 ~~~a~~~a~~la~~~~~a~~~~K 211 (266)
T 3fdu_A 189 YATAQATAQHLTALPLASLKQTK 211 (266)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999886
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=288.99 Aligned_cols=178 Identities=21% Similarity=0.348 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++...+......+...+++++.++.++||||||+|||+|+ |
T Consensus 44 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-G 121 (257)
T 1szo_A 44 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-N 121 (257)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-S
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcC-CCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCchH-H
Confidence 57899999999999999999999998 689999999998764333333334455677888999999999999999999 4
Q ss_pred hHHHHhhCCEEEEcCCeEEeC-ccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 81 GLEMALACDLRICGEAALLGL-PETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~-~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
|++|+++||+||++++++|++ ||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 122 G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~ 201 (257)
T 1szo_A 122 APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLP 201 (257)
T ss_dssp STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHH
T ss_pred HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++++|.+++.+|
T Consensus 202 ~a~~~a~~la~~~~~a~~~~K 222 (257)
T 1szo_A 202 RAWELARGIAEKPLLARRYAR 222 (257)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=294.45 Aligned_cols=180 Identities=24% Similarity=0.442 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh--hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..... .........++.++.++.++||||||+|||+|+
T Consensus 56 ~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~ 135 (289)
T 3t89_A 56 TVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSI 135 (289)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEee
Confidence 578999999999999999999999995579999999998754221 111112223567888999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 136 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~ 215 (289)
T 3t89_A 136 GGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLE 215 (289)
T ss_dssp THHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred hHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHH
Confidence 99999999999999999999999999999888777799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++++|++++|.+++.+|
T Consensus 216 ~~a~~~A~~la~~~~~a~~~~K 237 (289)
T 3t89_A 216 KETVRWCREMLQNSPMALRCLK 237 (289)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=292.89 Aligned_cols=179 Identities=30% Similarity=0.478 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC---hhH-HHHHHHHHHHH-HHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---PSE-IHFYVNTLRST-FSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~---~~~-~~~~~~~~~~~-~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++.... ... ...+.+....+ +..+.++||||||+|||
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (276)
T 2j5i_A 37 LNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNG 115 (276)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEEES-TTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 57899999999999999999999998 79999999998874311 111 11222223333 66788999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++
T Consensus 116 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 195 (276)
T 2j5i_A 116 WCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLA 195 (276)
T ss_dssp CEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECHH
T ss_pred eeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.+++++++++||.+++.+|
T Consensus 196 ~l~~~a~~~a~~la~~~p~a~~~~K 220 (276)
T 2j5i_A 196 QLREVTIELARNLLEKNPVVLRAAK 220 (276)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999876
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=298.49 Aligned_cols=180 Identities=24% Similarity=0.395 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCC------ceEecCCccccccCCh-----------hHHHHHHHHHHHHHHHHh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPK------VFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLE 63 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~------~F~~G~D~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 63 (180)
|+.+|.++|+.++.|+++++|||||.|++ .||+|.|++++..... .........++.++..+.
T Consensus 85 ~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 164 (334)
T 3t8b_A 85 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIR 164 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999544 8999999998643211 001111223456788899
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEc-CCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~-~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
++||||||+|||+|+|+|++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++|+||
T Consensus 165 ~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA 244 (334)
T 3t8b_A 165 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQM 244 (334)
T ss_dssp HSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHH
T ss_pred hCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 143 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 143 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++||||+|+|++++.+++.+++++|++++|.+++++|
T Consensus 245 ~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~~~K 282 (334)
T 3t8b_A 245 HQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLK 282 (334)
T ss_dssp HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999887
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=288.76 Aligned_cols=178 Identities=24% Similarity=0.339 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC-ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++... +......+.+.++.++.++.++||||||+|||+|+
T Consensus 52 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~- 129 (263)
T 2j5g_A 52 THREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL- 129 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-
Confidence 57899999999999999999999998 6999999999987653 22223334455677888999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeC-ccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 80 GGLEMALACDLRICGEAALLGL-PETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~-~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
||++|+++||+||++++++|++ ||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 130 GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~ 209 (263)
T 2j5g_A 130 LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLM 209 (263)
T ss_dssp SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHH
T ss_pred HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHH
Confidence 5999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++++|.+++.+|
T Consensus 210 ~~a~~~a~~la~~~~~a~~~~K 231 (263)
T 2j5g_A 210 ERAWEIARTLAKQPTLNLRYTR 231 (263)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999876
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=289.00 Aligned_cols=178 Identities=22% Similarity=0.364 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC---h-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---P-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+. ++|||||. |++||+|.|++++.... . .....+.+.++.++.++.++||||||+|||+
T Consensus 34 ~~~~L~~al~~~~~d~~-r~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 111 (261)
T 2gtr_A 34 VMREVQSALSTAAADDS-KLVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGP 111 (261)
T ss_dssp HHHHHHHHHHHHHHSSC-SCEEEEES-SSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhcCCC-EEEEEecC-CCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 57899999999999875 99999998 79999999999875421 1 1223344556778889999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 112 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 191 (261)
T 2gtr_A 112 AIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191 (261)
T ss_dssp EETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGG
T ss_pred EeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCcccccChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.||.+++.+|
T Consensus 192 l~~~a~~~a~~la~~~p~a~~~~K 215 (261)
T 2gtr_A 192 FTQEVMVRIKELASCNPVVLEESK 215 (261)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=297.25 Aligned_cols=178 Identities=28% Similarity=0.476 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++...........+.. +.++.++.++||||||+|||+|+|+
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAav~G~a~Gg 112 (265)
T 3qxz_A 35 LGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAPRNPDFSA-SPVQPAAFELRTPVIAAVNGHAIGI 112 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCSTTCTTCCCCCCSSCCCS-CCSSSCGGGSSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCccccCcChHHHhhccchhHHHHHHH-HHHHHHHHhCCCCEEEEECCEEehH
Confidence 57899999999999999999999998 699999999998865432211111222 5567789999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 113 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~ 192 (265)
T 3qxz_A 113 GMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGA 192 (265)
T ss_dssp HHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHH
T ss_pred hHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CHHHHHhhC
Q 030277 161 ALEIAQEINQK-VQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~-~~~a~~~~K 180 (180)
+.+++++++++ ||.+++.+|
T Consensus 193 a~~~a~~la~~~~p~a~~~~K 213 (265)
T 3qxz_A 193 ALRMAHDIATNVAPESAALTK 213 (265)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHH
Confidence 99999999999 999999876
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-47 Score=295.10 Aligned_cols=177 Identities=38% Similarity=0.505 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.......... .....++..+.++||||||+|||+|+|+
T Consensus 39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIAav~G~a~Gg 115 (262)
T 3r9q_A 39 TAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMGTDRGNELHP--HGPGPMGPSRLRLSKPVIAAISGHAVAG 115 (262)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCTTTTTSTTSCCCCT--TSSCTTSSTTCCCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHhccChhhHHH--hhhhHHHHHHHhCCCCEEEEECCeeehh
Confidence 57899999999999999999999998 69999999999986543321100 0112234456799999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 116 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~ 195 (262)
T 3r9q_A 116 GIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREA 195 (262)
T ss_dssp HHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHH
T ss_pred hhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++|++.||.+++.+|
T Consensus 196 a~~~a~~la~~~~~a~~~~K 215 (262)
T 3r9q_A 196 AETLAAEIAAFPQQCVRADR 215 (262)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=294.52 Aligned_cols=179 Identities=31% Similarity=0.494 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHh---cCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLE---ALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++...............+.++..+. ++||||||+|||+|
T Consensus 48 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a 126 (278)
T 4f47_A 48 MMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPA 126 (278)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCCC----------------------CTTCBTTTTBSCCCSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEE
Confidence 57899999999999999999999998 689999999999865433221111112334455666 99999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 127 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 206 (278)
T 4f47_A 127 IAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQA 206 (278)
T ss_dssp ETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCH
T ss_pred ehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 207 ~~~a~~~a~~la~~~~~a~~~~K 229 (278)
T 4f47_A 207 LTKALEIAEIIAANGPLAVQAIL 229 (278)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999876
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=291.11 Aligned_cols=178 Identities=24% Similarity=0.449 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEe-CCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRS-SVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g-~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+ +++||||| .|+++||+|.|++++........ .+...+++++.++.++||||||+|||+|+|
T Consensus 32 ~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 109 (261)
T 1ef8_A 32 FIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPL-SYDDPLRQITRMIQKFPKPIISMVEGSVWG 109 (261)
T ss_dssp HHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTT-CTTSHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhH-HHHHHHHHHHHHHHhCCCCEEEEECCEEEe
Confidence 5789999999999999 99999999 84499999999998754321111 112245678888999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 110 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 189 (261)
T 1ef8_A 110 GAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELED 189 (261)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHH
T ss_pred HhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 190 ~a~~~a~~la~~~~~a~~~~K 210 (261)
T 1ef8_A 190 FTLQMAHHISEKAPLAIAVIK 210 (261)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=290.20 Aligned_cols=170 Identities=32% Similarity=0.478 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... ..++.+..++.++||||||+|||+|+|+
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vvltg~-g~~F~aG~Dl~~~~~~---------~~~~~~~~~l~~~~kPvIAav~G~a~Gg 106 (256)
T 3pe8_A 37 LRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLKELGDT---------TELPDISPKWPDMTKPVIGAINGAAVTG 106 (256)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEES-TTCSBCCBCTTTC------------------CCCCCCCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhhh---------HHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 57899999999999999999999998 6899999999987643 1223445678899999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 186 (256)
T 3pe8_A 107 GLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTA 186 (256)
T ss_dssp HHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (256)
T 3pe8_A 187 ARRVAASIVGNNQKAVRALL 206 (256)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=292.48 Aligned_cols=178 Identities=21% Similarity=0.378 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++|+.++.|+. ++|||||. |+.||+|.|++++.... ......+...+++++.++.++||||||+|||+
T Consensus 52 m~~~L~~al~~~~~d~~-r~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 129 (291)
T 2fbm_A 52 VIKEIVNALNSAAADDS-KLVLFSAA-GSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 129 (291)
T ss_dssp HHHHHHHHHHHHHHSSC-SEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhcCCC-eEEEEECC-CCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 57899999999999875 99999998 79999999999875321 11223344556778889999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..+++++++||++++|+||+++||||+|+|+++
T Consensus 130 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~ 209 (291)
T 2fbm_A 130 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209 (291)
T ss_dssp EETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTT
T ss_pred eecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCcceecChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.||.+++.+|
T Consensus 210 l~~~a~~~a~~la~~~p~a~~~~K 233 (291)
T 2fbm_A 210 FTQEVMIQIKELASYNPIVLEECK 233 (291)
T ss_dssp SHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-46 Score=289.53 Aligned_cols=177 Identities=36% Similarity=0.617 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++...... ..+...+...+.++.++||||||+|||+|+|+
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 111 (260)
T 1mj3_A 35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQ--DCYSGKFLSHWDHITRIKKPVIAAVNGYALGG 111 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHH--HHHHC--CCGGGGGGGCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEECC-CCCccCCcChHhhhcccch--HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeH
Confidence 57899999999999999999999998 7999999999987543321 11222233346678899999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 112 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 191 (260)
T 1mj3_A 112 GCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEE 191 (260)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 192 a~~~a~~la~~~~~a~~~~K 211 (260)
T 1mj3_A 192 AIQCAEKIANNSKIIVAMAK 211 (260)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998876
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=288.80 Aligned_cols=176 Identities=31% Similarity=0.433 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHH-HHHHH-h--cCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS-TFSFL-E--ALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++ .. . ......+.+..+. ++.++ . ++||||||+|||+
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~ 112 (265)
T 3rsi_A 37 MVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLS-DG-W-MVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGA 112 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC-----------------CCCHHHHHHHTTSSCCCSSCEEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCCC-cc-c-ccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCe
Confidence 57899999999999999999999999 68999999998 22 1 1111122223345 78888 8 9999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 113 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 192 (265)
T 3rsi_A 113 CLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGT 192 (265)
T ss_dssp EETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTC
T ss_pred eeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 193 l~~~a~~~a~~la~~~~~a~~~~K 216 (265)
T 3rsi_A 193 ALDKARSLADRIVRNGPLAVRNAK 216 (265)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999876
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=297.56 Aligned_cols=179 Identities=26% Similarity=0.331 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHH-hcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. ++.||+|.|++++..........+.+...+.+.++ .++||||||+|||+|+|
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~G 115 (265)
T 3swx_A 37 MLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLT 115 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeh
Confidence 57899999999999999999999999 67799999998875421111001112223445667 89999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 116 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 195 (265)
T 3swx_A 116 LGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVD 195 (265)
T ss_dssp HHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHH
T ss_pred HHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 196 ~a~~~a~~la~~~p~a~~~~K 216 (265)
T 3swx_A 196 TAIAIAQTIARQAPLGVQATL 216 (265)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999886
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-45 Score=285.13 Aligned_cols=176 Identities=23% Similarity=0.379 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccc-cCChhH----HHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR-QMSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++. ..+... ...+.+.++.++.++.++||||||+|||
T Consensus 39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 117 (267)
T 3oc7_A 39 LVSQLHQGLRDASSDPAVRVVVLAHT-GGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDG 117 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEC-SSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 57899999999999999999999998 68999999999986 222221 1245667788999999999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+|+|+|++|+++||+||++++++|++||+++|++|+++++++++ ++|..++++++++|++++|+||+++||||++ ++
T Consensus 118 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~ 194 (267)
T 3oc7_A 118 HVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA--AE 194 (267)
T ss_dssp EEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CS
T ss_pred eecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999 88
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.++++++++.+|.+++.+|
T Consensus 195 ~l~~~a~~~a~~la~~~~~a~~~~K 219 (267)
T 3oc7_A 195 DLDAAIDQLVTDVGRGSPQGLAASK 219 (267)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8999999999999999999999876
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=295.86 Aligned_cols=178 Identities=21% Similarity=0.350 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-------hHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-------SEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... ......+..++.++.++.++||||||+|
T Consensus 39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 117 (274)
T 3tlf_A 39 MITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAV 117 (274)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCC-CCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57899999999999999999999999 699999999998865332 1111112233556778899999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCC--CCCHHHHHhcCcccee
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR--KVSGKDAMSLGLVNYY 151 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~--~~~a~ea~~~Glv~~v 151 (180)
||+|+|+|++|+++||+||++++++|++||+++|++| ++++++|++++|..++++++++|+ +++|+||+++||||++
T Consensus 118 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~v 196 (274)
T 3tlf_A 118 NGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEI 196 (274)
T ss_dssp CSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEE
T ss_pred CCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCCee
Confidence 9999999999999999999999999999999999999 999999999999999999999999 9999999999999999
Q ss_pred cCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 152 VPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 152 ~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+|++++.+++.++++++++.||.+++.+|
T Consensus 197 v~~~~l~~~a~~~a~~la~~~~~a~~~~K 225 (274)
T 3tlf_A 197 VEHDRLLERAHEIADIVNSNAPLAVRGTR 225 (274)
T ss_dssp ECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999886
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-46 Score=291.24 Aligned_cols=179 Identities=25% Similarity=0.457 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCC-ceEecCCccccccCChhHHHHH-HHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPK-VFCAGADLKERRQMSPSEIHFY-VNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~-~F~~G~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||. ++ +||+|.|++++........... ...+++++..+.++||||||+|||+|+
T Consensus 41 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T 2uzf_A 41 TVAEMIDAFSRARDDQNVSVIVLTGE-GDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAV 119 (273)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEECEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecC-CCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEECCEEe
Confidence 57899999999999999999999998 56 9999999998754111000000 001346777889999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~ 199 (273)
T 2uzf_A 120 GGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199 (273)
T ss_dssp THHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSH
T ss_pred ehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.+|.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (273)
T 2uzf_A 200 DETVQWCKEIMKHSPTALRFLK 221 (273)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-45 Score=282.72 Aligned_cols=175 Identities=18% Similarity=0.308 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++. +++++|||||. |++||+|.|++++..............++.++.++.++||||||+|||+|+|+
T Consensus 35 ~~~~L~~al~~~~~-~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 112 (254)
T 3isa_A 35 LVEALIDGVDAAHR-EQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGA 112 (254)
T ss_dssp HHHHHHHHHHHHHH-TTCSEEEEEES-TTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETH
T ss_pred HHHHHHHHHHHhhc-CCcEEEEEECC-CCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeec
Confidence 57899999999987 59999999999 69999999999987665554444455677889999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++| ++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 113 G~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 189 (254)
T 3isa_A 113 GVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPAL 189 (254)
T ss_dssp HHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCGGGHHHH
T ss_pred chhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEeChhHHHHH
Confidence 999999999999999999999999999998 37899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 190 a~~~a~~la~~~~~a~~~~K 209 (254)
T 3isa_A 190 IDAAAEAATALDPATRATLH 209 (254)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=292.78 Aligned_cols=179 Identities=32% Similarity=0.423 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..................+ ...++||||||+|||+|+|+
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kPvIAav~G~a~Gg 115 (267)
T 3r9t_A 37 VSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY-VRHFIDKPTIAAVNGTALGG 115 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGT-TTCCCSSCEEEEECSEECTH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHH-HHHhCCCCEEEEECCEEEhH
Confidence 57899999999999999999999999557999999999876532211000000000111 22489999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 116 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~ 195 (267)
T 3r9t_A 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDA 195 (267)
T ss_dssp HHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 196 a~~~a~~la~~~p~a~~~~K 215 (267)
T 3r9t_A 196 ALALASAITVNAPLSVQASK 215 (267)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHH
Confidence 99999999999999999887
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=288.48 Aligned_cols=179 Identities=18% Similarity=0.194 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-------hHHH----HHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-------SEIH----FYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++..... .... .+....+.++..+.++||||
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 115 (280)
T 1pjh_A 37 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL 115 (280)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999998 699999999998753211 1111 12223357788899999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEc-CCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~-~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
||+|||+|+|+|++|+++||+||++ ++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++|||
T Consensus 116 IAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv 195 (280)
T 1pjh_A 116 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFI 195 (280)
T ss_dssp EEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCC
T ss_pred EEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCc-----hHHHHHH-HHHHHHhccCHHHHHhhC
Q 030277 149 NYYVPAG-----QAQLKAL-EIAQEINQKVQSVFRILL 180 (180)
Q Consensus 149 ~~v~~~~-----~~~~~a~-~~a~~~~~~~~~a~~~~K 180 (180)
|+|+|++ ++.+++. +++++++++||.+++.+|
T Consensus 196 ~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K 233 (280)
T 1pjh_A 196 SKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMK 233 (280)
T ss_dssp SEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999985 7888885 999999999999999876
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=289.31 Aligned_cols=174 Identities=21% Similarity=0.347 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++........ ..++++.++.++||||||+|||+|+|+
T Consensus 31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~-----~~~~~~~~l~~~~kPvIAav~G~a~Gg 104 (243)
T 2q35_A 31 IVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEV-----EVLDLSGLILDCEIPIIAAMQGHSFGG 104 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECBSCHHHHHHHHTTCC-----CCCCCHHHHHTCCSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCCChHHHhhccchhh-----HHHHHHHHHHhCCCCEEEEEcCccccc
Confidence 57899999999999999999999998 799999999987643111100 124567789999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 105 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 184 (243)
T 2q35_A 105 GLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNY 184 (243)
T ss_dssp HHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEECHHHHHHH
T ss_pred hHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEecChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 185 a~~~a~~la~~~~~a~~~~K 204 (243)
T 2q35_A 185 AQQLGQKIAKSPRLSLVALK 204 (243)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=293.60 Aligned_cols=164 Identities=23% Similarity=0.450 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||||+|+++||+|.|++++... +......+....+.++..+.++||||||+|||+|
T Consensus 37 m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 116 (353)
T 4hdt_A 37 MVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIV 116 (353)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEEEeECce
Confidence 6789999999999999999999999966899999999987542 3344556667778899999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .+++++++||++++|+||+++||||+|||++++
T Consensus 117 ~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 195 (353)
T 4hdt_A 117 MGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPHDKI 195 (353)
T ss_dssp ETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGH
T ss_pred eecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHH
Confidence 9999999999999999999999999999999999999999999988 699999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 030277 158 QLKALEIA 165 (180)
Q Consensus 158 ~~~a~~~a 165 (180)
.+.+++++
T Consensus 196 ~~~a~~la 203 (353)
T 4hdt_A 196 DEFTRAVI 203 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=288.99 Aligned_cols=178 Identities=24% Similarity=0.404 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHhhc-----CCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHH---hcCCCc
Q 030277 1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFL---EALPIP 68 (180)
Q Consensus 1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~kp 68 (180)
|+.+|.++|+.++. |+++++|||||. |++||+|.|++++.... ......+...+...+..+ .++|||
T Consensus 64 m~~eL~~al~~~~~d~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kP 142 (305)
T 3m6n_A 64 LVDDITGYQTNLGQRLNTAGVLAPHVVLASD-SDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAH 142 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCEEEEEES-SSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCE
T ss_pred HHHHHHHHHHHHHhcccccCCCeEEEEEECC-CCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57899999999987 589999999997 89999999999876432 122333344444444444 568999
Q ss_pred EEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 69 ~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
|||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++|||
T Consensus 143 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv 222 (305)
T 3m6n_A 143 SIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLV 222 (305)
T ss_dssp EEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSC
T ss_pred EEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 149 NYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 149 ~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|+|+|++++.+++.+++++|++ +|.+++.+|
T Consensus 223 ~~vv~~~~l~~~a~~~a~~la~-~p~a~~~~K 253 (305)
T 3m6n_A 223 DRVVPRGQGVAAVEQVIRESKR-TPHAWAAMQ 253 (305)
T ss_dssp SEEECTTCHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CEecChhHHHHHHHHHHHHHhh-ChHHHHHHH
Confidence 9999999999999999999996 888888776
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=291.59 Aligned_cols=176 Identities=23% Similarity=0.313 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh------------------------------HHHH
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS------------------------------EIHF 50 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~------------------------------~~~~ 50 (180)
|+.+|.++|+.++.|+++++|||||. |++||+|.|++++...... ....
T Consensus 63 m~~eL~~al~~~~~d~~vrvvVltG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (333)
T 3njd_A 63 TPLELSALVERADLDPDVHVILVSGR-GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQ 141 (333)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecCcCHHHHhhcccccccccccccccccccccccccccccccchhhHHH
Confidence 57899999999999999999999999 6999999999987543211 1223
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHH
Q 030277 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDI 130 (180)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l 130 (180)
+...++.++..+.++||||||+|||+|+|+|++|+++||+||++++++|++||+++|++|+.+ .+++++|..+++++
T Consensus 142 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~el 218 (333)
T 3njd_A 142 MMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRL 218 (333)
T ss_dssp HHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTC---CHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHH---HHHHHHHHHHHHHH
Confidence 455667788899999999999999999999999999999999999999999999999999875 57899999999999
Q ss_pred HhcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 131 IFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 131 ~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++|++++|+||+++||||+|+|++++.+++.++|++|+++||.+++.+|
T Consensus 219 lltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~~~K 268 (333)
T 3njd_A 219 LFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLIMAK 268 (333)
T ss_dssp HTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=284.07 Aligned_cols=177 Identities=27% Similarity=0.381 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh----h-HHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP----S-EIHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... . ......+.+++++.++.++||||||+|||
T Consensus 48 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 126 (279)
T 3t3w_A 48 LLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQG 126 (279)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEC-SSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 57899999999999999999999999 699999999998865421 1 11222345567788999999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+|+|+|++|+++||+||++++++|++||+++|+.| .++.. +++++|..++++++++|++++|+||+++||||+++|++
T Consensus 127 ~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~-~~~~~-~~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~ 204 (279)
T 3t3w_A 127 RCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGG-VEYHG-HTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRD 204 (279)
T ss_dssp EEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSS-CSSCC-HHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred eEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCC-chHHH-HHhhcCHHHHHHHHHcCCccCHHHHHHCCCCcEeeChH
Confidence 99999999999999999999999999999999944 44443 38999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.++++++++.||.+++.+|
T Consensus 205 ~l~~~a~~~a~~la~~~~~a~~~~K 229 (279)
T 3t3w_A 205 RLDAETRALAGEIAKMPPFALRQAK 229 (279)
T ss_dssp GHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999876
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=285.75 Aligned_cols=173 Identities=29% Similarity=0.469 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHH-HHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRST-FSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.......... +.+ +..+.. ||||||+|||+|+|
T Consensus 43 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~-----~~~~~~~~~~-~kPvIAav~G~a~G 115 (265)
T 3qxi_A 43 VSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLKAFARGENVVVEG-----RGLGFTERPP-AKPLIAAVEGYALA 115 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCCCCSBC-------CCCEETT-----TEETTTTSCC-SSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCeeCCCChhhhhccchhhhhh-----hhhhHHHhhC-CCCEEEEECCceeH
Confidence 57899999999999999999999998 68999999999876532211000 111 333444 99999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 116 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 195 (265)
T 3qxi_A 116 GGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALD 195 (265)
T ss_dssp HHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 196 ~a~~~a~~la~~~p~a~~~~K 216 (265)
T 3qxi_A 196 AAIALAEKITANGPLAVAATK 216 (265)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=282.54 Aligned_cols=175 Identities=20% Similarity=0.279 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.| ++++|||||. |++||+|.|++++.... ........+.++.++.++.++||||||+|||+|+
T Consensus 35 ~~~~L~~al~~~~~d-~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 112 (267)
T 3hp0_A 35 LIEECLQVLNQCETS-TVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVN 112 (267)
T ss_dssp HHHHHHHHHHHHHHS-SCCEEEEECC-SSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEECSEEE
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEECC-CCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEe
Confidence 578999999999986 6999999998 79999999999876531 1111122345677888999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+++ +++|++++|..++++++++|++++|+||+++||||+++|+.+
T Consensus 113 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~-- 189 (267)
T 3hp0_A 113 AGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESD-- 189 (267)
T ss_dssp TTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--
T ss_pred ehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCCHH--
Confidence 99999999999999999999999999999999885 678999999999999999999999999999999999998643
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+.++++++++.||.+++.+|
T Consensus 190 ~~~~~~a~~la~~~p~a~~~~K 211 (267)
T 3hp0_A 190 VLLRKHLLRLRRLNKKGIAHYK 211 (267)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 3578899999999999999887
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=284.92 Aligned_cols=173 Identities=32% Similarity=0.502 Sum_probs=156.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.......... .+ . +..+ ++||||||+|||+|+|+
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~---~~-~-~~~~-~~~kPvIAav~G~a~Gg 107 (256)
T 3trr_A 35 VSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLKAFVSGEAVLSER---GL-G-FTNV-PPRKPIIAAVEGFALAG 107 (256)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEG-GGCCCCCBCHHHHHHTCCCEETT---EE-T-TSSS-CCSSCEEEEECSBCCTH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCceecCcCHHHhccccchhhhh---hh-h-HHHh-cCCCCEEEEECCeeeec
Confidence 57899999999999999999999998 68999999998876432111000 01 1 2234 89999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+.+++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 187 (256)
T 3trr_A 108 GTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDT 187 (256)
T ss_dssp HHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHH
T ss_pred hhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEecChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (256)
T 3trr_A 188 ALELAAKITANGPLAVAATK 207 (256)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=279.54 Aligned_cols=169 Identities=25% Similarity=0.451 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.| ++++|||||. |+.||+|.|++... .. ..+.+.+++++.++.++||||||+|||+|+|+
T Consensus 49 ~~~~L~~al~~~~~d-~vr~vVltg~-G~~FcaG~Dl~~~~--~~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 121 (264)
T 3he2_A 49 LVEELTQAIRKAGDG-SARAIVLTGQ-GTAFCAGADLSGDA--FA---ADYPDRLIELHKAMDASPMPVVGAINGPAIGA 121 (264)
T ss_dssp HHHHHHHHHHCC----CCSEEEEEES-SSCSBCCBCCTTCT--TG---GGHHHHHHHHHHHHHHCSSCEEEEECSCEETH
T ss_pred HHHHHHHHHHHHhhC-CceEEEEECC-CCCccCCcCCccch--hh---HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcc
Confidence 578999999999988 9999999999 69999999998421 11 22345567788999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+.+++++|++++|..++++++++|++++|+||+++||||++++ .++
T Consensus 122 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~----~~~ 197 (264)
T 3he2_A 122 GLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT----LAD 197 (264)
T ss_dssp HHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC----HHH
T ss_pred hhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec----HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 467
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 198 a~~~A~~la~~~p~a~~~~K 217 (264)
T 3he2_A 198 AQAWAAEIARLAPLAIQHAK 217 (264)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=288.37 Aligned_cols=158 Identities=24% Similarity=0.491 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++... .......+....+.++.++.++||||||+|||+|
T Consensus 34 m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 113 (363)
T 3bpt_A 34 MIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGIT 113 (363)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 6789999999999999999999999956999999999987532 1111223344456778899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. +++++++||++++|+||+++||||+++|++++
T Consensus 114 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l 192 (363)
T 3bpt_A 114 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDSEKL 192 (363)
T ss_dssp ETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCSEECCGGGH
T ss_pred ehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCcceecCHHHH
Confidence 99999999999999999999999999999999999999999999997 99999999999999999999999999999887
Q ss_pred HH
Q 030277 158 QL 159 (180)
Q Consensus 158 ~~ 159 (180)
.+
T Consensus 193 ~~ 194 (363)
T 3bpt_A 193 AM 194 (363)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=289.53 Aligned_cols=158 Identities=23% Similarity=0.402 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-------hhHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------PSEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+.+|.++|+.++.|+++++|||||.|+++||+|.|++++.... ......+....+.++.++.++||||||+|
T Consensus 70 m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV 149 (407)
T 3ju1_A 70 MVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWG 149 (407)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCSSCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 67899999999999999999999999558999999999876431 22344556666788999999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+++++++||++++|+||+++||||+++|
T Consensus 150 nG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~ 228 (407)
T 3ju1_A 150 DGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHYLN 228 (407)
T ss_dssp CSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECC
T ss_pred CCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEEcC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CchHHH
Q 030277 154 AGQAQL 159 (180)
Q Consensus 154 ~~~~~~ 159 (180)
++++.+
T Consensus 229 ~~~l~~ 234 (407)
T 3ju1_A 229 RDDKEL 234 (407)
T ss_dssp GGGHHH
T ss_pred HHHHHH
Confidence 988776
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=287.76 Aligned_cols=177 Identities=25% Similarity=0.314 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHhhcC-CCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHH----hcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL----EALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++.| +++++|||||+.++.||+|.|++++..........+.+.++.++.++ .++||||||+|||
T Consensus 59 ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG 138 (556)
T 2w3p_A 59 VDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNG 138 (556)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 578999999999999 99999999993389999999999886654333334455667788888 9999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCC--eEEeCcccc-ccccCCcchhhhhh--hhcCHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~--~~~~~~e~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
+|+|||++|+++||+||++++ ++|++||++ +|++|++|++++++ +++|..++++++++|++++|+||+++||||+
T Consensus 139 ~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVde 218 (556)
T 2w3p_A 139 ACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDE 218 (556)
T ss_dssp EEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSE
T ss_pred eechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceE
Confidence 999999999999999999999 999999999 99999999999999 9999999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHHHhccCHHHHH
Q 030277 151 YVPAGQAQLKALEIAQEINQKVQSVFR 177 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~~~~~a~~ 177 (180)
++|++++.+++.++++++++.+|.+++
T Consensus 219 VVp~~eL~~~A~~lA~~LA~~~p~Av~ 245 (556)
T 2w3p_A 219 VVKPNQFDQAIQARALELAAQSDRPAH 245 (556)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred EeChhHHHHHHHHHHHHHHcCChHHHh
Confidence 999999999999999999999998765
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=292.63 Aligned_cols=169 Identities=37% Similarity=0.618 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. ++.||+|.|++++....+.. .+.+++.++.+++|||||+|||+|+||
T Consensus 48 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aGaDl~~~~~~~~~~------~~~~~~~~i~~~~kPvIAai~G~a~GG 120 (742)
T 3zwc_A 48 VIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGL------ALGSLVDEIQRYQKPVLAAIQGVALGG 120 (742)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCSSSCCSSCSCS------HHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCccccCcChHhhhccChhH------HHHHHHHHHHhCCCCEEEEECccchHH
Confidence 57899999999999999999999999 79999999999987755442 235678889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+++++||++++|+||+++||||+|+|++. .++
T Consensus 121 G~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~d~-~~~ 199 (742)
T 3zwc_A 121 GLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDP-VEE 199 (742)
T ss_dssp HHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSCH-HHH
T ss_pred HHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEecCchh-hHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 578
Q ss_pred HHHHHHHHhccCHHHHH
Q 030277 161 ALEIAQEINQKVQSVFR 177 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~ 177 (180)
+.++|++++++++...+
T Consensus 200 A~~~A~~ia~~~~~~~~ 216 (742)
T 3zwc_A 200 AIKFAQKIIDKPIEPRR 216 (742)
T ss_dssp HHHHHHHHTTSCSGGGC
T ss_pred HHHHHHHHhcCCchhhh
Confidence 99999999998875443
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=277.33 Aligned_cols=176 Identities=23% Similarity=0.340 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeC--------CCCceEecCCccccccCCh--hH--HHHHHHHHHHHHHHH------
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSS--------VPKVFCAGADLKERRQMSP--SE--IHFYVNTLRSTFSFL------ 62 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~--------~~~~F~~G~D~~~~~~~~~--~~--~~~~~~~~~~~~~~~------ 62 (180)
|+.+|.++|+.++.|+++++|||||. |+++||+|.|++++..... .. .......++.++..+
T Consensus 195 m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (440)
T 2np9_A 195 QVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDR 274 (440)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEECCSCS
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHHHHHHHHHHHHHhhccc
Confidence 67899999999999999999999994 3489999999998754321 11 111122234455544
Q ss_pred ------hcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCC
Q 030277 63 ------EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRK 136 (180)
Q Consensus 63 ------~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~ 136 (180)
.+++|||||+|||+|+|+|++|+++||+||++++++|++||+++|++|+++ +++|++++|..++++++++|++
T Consensus 275 ~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~ 353 (440)
T 2np9_A 275 PGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGRR 353 (440)
T ss_dssp TTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCC
T ss_pred chhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchH-HHHHHHHhhHHHHHHHHHcCCC
Confidence 479999999999999999999999999999999999999999999999887 6799999999999999999999
Q ss_pred CCHHHHHhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 137 VSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 137 ~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++|+||+++||||+|+|++++.+++.+++++++. .+++.+|
T Consensus 354 i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~Av~~~K 394 (440)
T 2np9_A 354 IWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---DAVLANR 394 (440)
T ss_dssp EETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---HHHHHHH
T ss_pred CCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---HHHHHHH
Confidence 9999999999999999999999999999988753 4555554
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=283.13 Aligned_cols=170 Identities=38% Similarity=0.562 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++||||| +++.||+|.|++++... +......+.+.+++++.++.++||||||+|||+|
T Consensus 36 ~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 114 (715)
T 1wdk_A 36 TLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIA 114 (715)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 5789999999999999999999999 55699999999988642 2223334456678889999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|++++|+|++|..++++++++|++++|+||+++||||+++|++++
T Consensus 115 ~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l 194 (715)
T 1wdk_A 115 LGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194 (715)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGH
T ss_pred eHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030277 158 QLKALEIAQEINQK 171 (180)
Q Consensus 158 ~~~a~~~a~~~~~~ 171 (180)
.+++.+++++++..
T Consensus 195 ~~~a~~~a~~la~~ 208 (715)
T 1wdk_A 195 GAAALDLIKRAISG 208 (715)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999876
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=282.72 Aligned_cols=170 Identities=38% Similarity=0.574 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH---HHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++||||| +++.||+|.|++++....... ...+.+.++.++.++.++||||||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 113 (725)
T 2wtb_A 35 VLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLA 113 (725)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEEECCcc
Confidence 5789999999999999999999999 556999999999875422110 011233456667788999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..++++++++|++++|+||+++||||+++|++++
T Consensus 114 ~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l 193 (725)
T 2wtb_A 114 LGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAEL 193 (725)
T ss_dssp ETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECCTTTH
T ss_pred CcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceEcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030277 158 QLKALEIAQEINQK 171 (180)
Q Consensus 158 ~~~a~~~a~~~~~~ 171 (180)
.+++.+++++++..
T Consensus 194 ~~~a~~~a~~la~~ 207 (725)
T 2wtb_A 194 VTTARRWALDIVGR 207 (725)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999876
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-23 Score=157.16 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhc-CCCcEEEEECCccchh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA-LPIPTIAVIDGAALGG 80 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kp~Ia~v~G~~~g~ 80 (180)
+++|.++|+.++.|+++++|||++. |.|.|+.. ...+++.+.++.. ++|||||+++|.|.|+
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~------------~~~i~~~l~~~~~~~~kPVia~v~g~a~~g 93 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYE------------SAEIHKKLEEIKKETKKPIYVSMGSMAASG 93 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHH------------HHHHHHHHHHHHHHHCCCEEEEEEEEEETH
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHH------------HHHHHHHHHHHHHhCCCeEEEEECCeehHh
Confidence 4789999999999999999999996 56777643 1345566777777 8999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCc---------------------cccccccCCcchh------------------------
Q 030277 81 GLEMALACDLRICGEAALLGLP---------------------ETGLAIIPGAGGT------------------------ 115 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~---------------------e~~~G~~p~~~~~------------------------ 115 (180)
|+.|+++||++++++++.|+.+ +++.|-.++.+..
T Consensus 94 G~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~ 173 (240)
T 3rst_A 94 GYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFV 173 (240)
T ss_dssp HHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 4455555444311
Q ss_pred --hhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHHHHH
Q 030277 116 --QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 166 (180)
Q Consensus 116 --~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~ 166 (180)
..-.|.+.....++ +++|+.+++++|+++||||++.+.+++.+.+.+.+.
T Consensus 174 ~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~~~~ 225 (240)
T 3rst_A 174 DVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHK 225 (240)
T ss_dssp HHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHHHCG
T ss_pred HHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHHhC
Confidence 11223345555554 778999999999999999999987777777666544
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-23 Score=178.13 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|.++|.++|+.++.|+++++|||++. |.|.|+.. ...+++.+.++..++||||++|+|.|.|+
T Consensus 323 ~~~~l~~~L~~a~~d~~vkaVVL~i~-----spGG~~~~------------~~~i~~~i~~l~~~~kPVia~v~g~Aasg 385 (593)
T 3bf0_A 323 GGDTTAAQIRDARLDPKVKAIVLRVN-----SPGGSVTA------------SEVIRAELAAARAAGKPVVVSMGGMAASG 385 (593)
T ss_dssp EHHHHHHHHHHHHHCTTEEEEEEEEE-----EEEECHHH------------HHHHHHHHHHHHHTTCCEEEEEEEEEETH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEec-----CCCCCHHH------------HHHHHHHHHHHHhCCCCEEEEECCChHHH
Confidence 36789999999999999999999997 35777643 12345667788889999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccc------------cccccCCc-------------chh---------------hhhhh
Q 030277 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGA-------------GGT---------------QRLPR 120 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~-------------~~~---------------~~l~~ 120 (180)
|+.++++||++++++++.|+.+++ ++|+.|.. +.+ ..|.+
T Consensus 386 G~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~ 465 (593)
T 3bf0_A 386 GYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFIT 465 (593)
T ss_dssp HHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 57886532 122 45667
Q ss_pred hcCHHH-----HHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHHHHH
Q 030277 121 LVGKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 166 (180)
Q Consensus 121 ~~g~~~-----a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~ 166 (180)
.++..+ +.+++++|+.++|+||+++||||++++.+++.+++.+++.
T Consensus 466 ~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~ 516 (593)
T 3bf0_A 466 LVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 516 (593)
T ss_dssp HHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred HHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence 777777 8899999999999999999999999988888777766543
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=142.58 Aligned_cols=137 Identities=16% Similarity=0.275 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEE---CCccc
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI---DGAAL 78 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v---~G~~~ 78 (180)
.+.|.++|+.++.+ ++++|+|+.. |.|.|+. ....++..+..++||||+++ +|.|.
T Consensus 24 ~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~---------------~~~~i~~~i~~~~~PVia~v~p~~G~Aa 82 (230)
T 3viv_A 24 YDQFDRYITIAEQD-NAEAIIIELD-----TPGGRAD---------------AMMNIVQRIQQSKIPVIIYVYPPGASAA 82 (230)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHH---------------HHHHHHHHHHTCSSCEEEEECSTTCEEE
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHH---------------HHHHHHHHHHhCCCCEEEEEecCCCEEh
Confidence 46788999998864 6899999885 5566542 22456777888999999999 99999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchh---------------hhhhhhcCH--HHHHHHHhcCCCCCHHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRLVGK--SVAKDIIFTGRKVSGKD 141 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~~~~g~--~~a~~l~l~g~~~~a~e 141 (180)
|+|+.|+++||++++++++.|+.+++..+. |..|.. ..+.+..|. ..+.+++.++..++|+|
T Consensus 83 saG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~E 161 (230)
T 3viv_A 83 SAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEE 161 (230)
T ss_dssp THHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHH
T ss_pred HHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCCeecHHH
Confidence 999999999999999999999999987532 333331 136666774 78899999999999999
Q ss_pred HHhcCccceecCC-chHHHH
Q 030277 142 AMSLGLVNYYVPA-GQAQLK 160 (180)
Q Consensus 142 a~~~Glv~~v~~~-~~~~~~ 160 (180)
|+++||||+++++ +++.++
T Consensus 162 Ale~GliD~V~~~~~~ll~~ 181 (230)
T 3viv_A 162 ALKYGVIEVVARDINELLKK 181 (230)
T ss_dssp HHHTTSCSEECSSHHHHHHH
T ss_pred HHHcCCceEecCCHHHHHHH
Confidence 9999999999976 444443
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=126.94 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.+++.+.|..++.|+.++.|+|.-. |.|.++. ....++..+..+++||++.++|.|.++|
T Consensus 59 a~~i~~~L~~l~~~~~~k~I~l~In-----SPGG~v~---------------ag~~I~~~i~~~~~pV~t~v~G~AaS~G 118 (218)
T 1y7o_A 59 ANSVIAQLLFLDAQDSTKDIYLYVN-----TPGGSVS---------------AGLAIVDTMNFIKADVQTIVMGMAASMG 118 (218)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHSSSCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCHH---------------HHHHHHHHHHhcCCCEEEEEccEeHHHH
Confidence 4678899999998877787777643 4454331 1234556677789999999999999999
Q ss_pred HHHHhhCCE--EEEcCCeEEeCccccccccCCcch------------------hhhhhhhcCH--HHHHHHHhcCCCCCH
Q 030277 82 LEMALACDL--RICGEAALLGLPETGLAIIPGAGG------------------TQRLPRLVGK--SVAKDIIFTGRKVSG 139 (180)
Q Consensus 82 ~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~------------------~~~l~~~~g~--~~a~~l~l~g~~~~a 139 (180)
+.|+++||. |++.+++.|++++..-| .|..|. ...+.+..|. ..+.+++.+++.++|
T Consensus 119 ~~Ia~a~d~g~r~a~p~a~igih~p~~g-~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta 197 (218)
T 1y7o_A 119 TVIASSGAKGKRFMLPNAEYMIHQPMGG-TGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSA 197 (218)
T ss_dssp HHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCH
T ss_pred HHHHHcCCcCcEEEcCCcEEEEeccccc-ccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcH
Confidence 999999999 99999999999998733 332222 2446666565 578889999999999
Q ss_pred HHHHhcCccceecCCch
Q 030277 140 KDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 140 ~ea~~~Glv~~v~~~~~ 156 (180)
+||+++||||+++++++
T Consensus 198 ~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 198 QETLEYGFIDEIMANNS 214 (218)
T ss_dssp HHHHHHTSCSEECCCC-
T ss_pred HHHHHCCCCcEEcCcCC
Confidence 99999999999998765
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=123.57 Aligned_cols=139 Identities=21% Similarity=0.278 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHH---hcCCCcEEEEECCccc
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL---EALPIPTIAVIDGAAL 78 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~kp~Ia~v~G~~~ 78 (180)
.+.+.++++.+.++ .+.+|+|++++ |.|+.+... . ...+..++..+ ...++|+|++|+|+|.
T Consensus 139 ~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~----~----l~~~~~i~~al~~~~~~~vP~IavV~G~~~ 203 (304)
T 2f9y_B 139 GARFVRAVEQALED-NCPLICFSASG------GARMQEALM----S----LMQMAKTSAALAKMQERGLPYISVLTDPTM 203 (304)
T ss_dssp HHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHH----H----HHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHH----H----HHHHHHHHHHHHHHhcCCCCEEEEEECCCc
Confidence 46788899999888 89999999973 777755321 1 12334445545 4559999999999999
Q ss_pred hhh-HHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 79 GGG-LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 79 g~G-~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
||| +.++++||++++.++++|++. +...+.+.+|.. ++++..+++++.++|+||.|++++++
T Consensus 204 GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~~Ae~~~~~Glvd~Vv~~~el 266 (304)
T 2f9y_B 204 GGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQRSEFLIEKGAIDMIVRRPEM 266 (304)
T ss_dssp HHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTTBHHHHGGGTCCSEECCHHHH
T ss_pred cHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccCCHHHHHhcCCccEEeCcHHH
Confidence 999 778999999999999999886 233455555542 46788899999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 030277 158 QLKALEIAQEINQKV 172 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~ 172 (180)
.+.+.+++..+...+
T Consensus 267 ~~~l~~ll~~l~~~~ 281 (304)
T 2f9y_B 267 RLKLASILAKLMNLP 281 (304)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhcCC
Confidence 999999999998653
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=119.81 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+...+.++.+++..- -+|.+.-++|-.. |.+. +.......+..++..+..+++|+|++|+|.|.|+|+
T Consensus 147 ~Ka~r~~~~A~~~~~-PlI~lvdt~Ga~~--g~~a---------e~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa 214 (327)
T 2f9i_A 147 RKALRLMKQAEKFNR-PIFTFIDTKGAYP--GKAA---------EERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGA 214 (327)
T ss_dssp HHHHHHHHHHHHTTC-CEEEEEEESCSCC--CHHH---------HHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHH
T ss_pred HHHHHHHHHHhhcCC-CEEEEEeCCCCCc--chhh---------hhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHH
Confidence 445667777776644 3454444323222 2211 111234455677788999999999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc-------
Q 030277 83 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------- 155 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~------- 155 (180)
.++++||+++|.+++.|++ +.|.++.+..+.+..+...+.++ ..++|++|+++|+||+|+|..
T Consensus 215 ~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~ep~gga~~~ 284 (327)
T 2f9i_A 215 LGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVISEPLGGAHKD 284 (327)
T ss_dssp HTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEECCCTTCGGGC
T ss_pred HHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEecCCCCCCccC
Confidence 9999999999999999885 34555555555555555666666 679999999999999999832
Q ss_pred ------hHHHHHHHHHHHHhccCHHHHH
Q 030277 156 ------QAQLKALEIAQEINQKVQSVFR 177 (180)
Q Consensus 156 ------~~~~~a~~~a~~~~~~~~~a~~ 177 (180)
++.+...+..+.+.++++..+.
T Consensus 285 ~~~~~~~lr~~l~~~L~~l~~~~~~~l~ 312 (327)
T 2f9i_A 285 IEQQALAIKSAFVAQLDSLESLSRDEIA 312 (327)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666667777776543
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=120.87 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+...++++.+++..- -+|.|.-++|-.. |.+. +.......+..++..+..+++|+|++|+|.|.|||+
T Consensus 161 ~Ka~r~~~~A~~~~l-PlI~lvDt~Ga~~--g~~a---------E~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa 228 (339)
T 2f9y_A 161 RKALRLMQMAERFKM-PIITFIDTPGAYP--GVGA---------EERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGA 228 (339)
T ss_dssp HHHHHHHHHHHHTTC-CEEEEEEESCSCC--SHHH---------HHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHH
T ss_pred HHHHHHHHHHhhcCC-CEEEEEeCCCCcc--chHH---------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHH
Confidence 345667777766644 4555544322222 2211 111234456677888999999999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc-------
Q 030277 83 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG------- 155 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~------- 155 (180)
.++++||+++|.+++.|++ +.|.++.+..+++..+...+.++ ..+++++|+++|+||+|+|..
T Consensus 229 ~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~ep~gga~~~ 298 (339)
T 2f9y_A 229 LAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIPEPLGGAHRN 298 (339)
T ss_dssp HTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCCCSTTCGGGC
T ss_pred HHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEecCCCCCCccC
Confidence 9999999999999999996 45667777777777777777777 679999999999999999832
Q ss_pred ------hHHHHHHHHHHHHhccCHHHHH
Q 030277 156 ------QAQLKALEIAQEINQKVQSVFR 177 (180)
Q Consensus 156 ------~~~~~a~~~a~~~~~~~~~a~~ 177 (180)
++.+...+..+.+.++++..+.
T Consensus 299 ~~~~~~~lr~~l~~~L~~l~~~~~~~l~ 326 (339)
T 2f9y_A 299 PEAMAASLKAQLLADLADLDVLSTEDLK 326 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4555555555666667766543
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=97.74 Aligned_cols=140 Identities=9% Similarity=0.004 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.+.+.+.|..++.++.++.|+|.=. |.|.++. ....+++.+...++||++.+.|.|.++|
T Consensus 41 a~~i~~~L~~~~~~~~~k~I~l~In-----SPGG~v~---------------a~~~I~~~i~~~~~pV~~~v~g~AaS~g 100 (208)
T 2cby_A 41 ANRLCAQILLLAAEDASKDISLYIN-----SPGGSIS---------------AGMAIYDTMVLAPCDIATYAMGMAASMG 100 (208)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH---------------HHHHHHHHHHHCSSCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCCCEEEEECcEeHHHH
Confidence 3567888888887776676665443 3333221 1234566677789999999999999999
Q ss_pred HHHHhhCCE--EEEcCCeEEeCccccccccCC---cch------------hhhhhhh--cCHHHHHHHHhcCCCCCHHHH
Q 030277 82 LEMALACDL--RICGEAALLGLPETGLAIIPG---AGG------------TQRLPRL--VGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 82 ~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~---~~~------------~~~l~~~--~g~~~a~~l~l~g~~~~a~ea 142 (180)
+.++++||. |++.+++.+++.+..-|.... ... ...+.+. .......+.+..+..++++||
T Consensus 101 ~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA 180 (208)
T 2cby_A 101 EFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEA 180 (208)
T ss_dssp HHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHH
T ss_pred HHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHH
Confidence 999999998 999999999988765332111 000 0112333 234446677889999999999
Q ss_pred HhcCccceecCC-chHHHHH
Q 030277 143 MSLGLVNYYVPA-GQAQLKA 161 (180)
Q Consensus 143 ~~~Glv~~v~~~-~~~~~~a 161 (180)
+++||||++.+. +++.++.
T Consensus 181 ~e~GLvD~i~~~~~~ll~~~ 200 (208)
T 2cby_A 181 LEYGFVDHIITRAHVNGEAQ 200 (208)
T ss_dssp HHHTSCSEECSCC-------
T ss_pred HHcCCCcEecCchHHHHHHH
Confidence 999999999965 5555443
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-10 Score=93.58 Aligned_cols=177 Identities=17% Similarity=0.162 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhh-cCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEE-CCccch
Q 030277 2 LRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI-DGAALG 79 (180)
Q Consensus 2 ~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v-~G~~~g 79 (180)
-+||.+++..+. ++.++..+++...|+..-....|---..+.+..-..+....+++.+.++.-.+.-.++.| .|.|+.
T Consensus 310 ~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~ 389 (556)
T 2w3p_A 310 AREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFA 389 (556)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEE
T ss_pred hhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhhHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchH
Confidence 467766666555 778999999887633211111111111111223345555566777778888899999999 499987
Q ss_pred hh-HHHHhhCCEEEEcC-------CeEEeCccccccccCCcchhhhhhhh-cCHHHHHHHH--hcCCCCCHHHHHhcCcc
Q 030277 80 GG-LEMALACDLRICGE-------AALLGLPETGLAIIPGAGGTQRLPRL-VGKSVAKDII--FTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 80 ~G-~~l~~~~D~~i~~~-------~~~~~~~e~~~G~~p~~~~~~~l~~~-~g~~~a~~l~--l~g~~~~a~ea~~~Glv 148 (180)
|- ++++++||..++-+ ...+.+.+.++|.+|-.....+|.++ .|..-....+ ..|+++++++|.++|||
T Consensus 390 g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (556)
T 2w3p_A 390 GTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLV 469 (556)
T ss_dssp GGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSS
T ss_pred HHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCe
Confidence 76 69999999999842 37799999999999988888888866 5544444333 45999999999999999
Q ss_pred ceecCCchHHHHHHHHHHHHhccCHHHHHh
Q 030277 149 NYYVPAGQAQLKALEIAQEINQKVQSVFRI 178 (180)
Q Consensus 149 ~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~ 178 (180)
+...++=+++++.+...++-++.+|+++-.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (556)
T 2w3p_A 470 TASPDDIDWADEIRIALEERAAMSPDALTG 499 (556)
T ss_dssp SBCCCTTTHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHhccCcchhcc
Confidence 999999999999999999999999999753
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.8e-11 Score=87.80 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|..++.++..+.|+|.=. |.|.++ ..-..+++.+...++|+++.+.|.|.++|+
T Consensus 41 ~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v---------------~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~ 100 (193)
T 1yg6_A 41 NLIVAQMLFLEAENPEKDIYLYIN-----SPGGVI---------------TAGMSIYDTMQFIKPDVSTICMGQAASMGA 100 (193)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCH---------------HHHHHHHHHHHhcCCCEEEEEeeeHHHHHH
Confidence 567788888887766676666543 334432 122345666777889999999999999999
Q ss_pred HHHhhCCE--EEEcCCeEEeCccccccccCC---cc------------hhhhhhhh--cCHHHHHHHHhcCCCCCHHHHH
Q 030277 83 EMALACDL--RICGEAALLGLPETGLAIIPG---AG------------GTQRLPRL--VGKSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 83 ~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~---~~------------~~~~l~~~--~g~~~a~~l~l~g~~~~a~ea~ 143 (180)
.++++||. |++.+++.++......|.... .. ....+.+. .......+++..+..++++||+
T Consensus 101 ~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~ 180 (193)
T 1yg6_A 101 FLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAV 180 (193)
T ss_dssp HHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHH
T ss_pred HHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHHHH
Confidence 99999999 999999999887765432110 00 00012222 2234445555456678999999
Q ss_pred hcCccceecCC
Q 030277 144 SLGLVNYYVPA 154 (180)
Q Consensus 144 ~~Glv~~v~~~ 154 (180)
++||||++.++
T Consensus 181 ~~GliD~i~~~ 191 (193)
T 1yg6_A 181 EYGLVDSILTH 191 (193)
T ss_dssp HHTSSSEECCC
T ss_pred HcCCCCEecCC
Confidence 99999999865
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-10 Score=83.95 Aligned_cols=133 Identities=10% Similarity=0.030 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|..++.++..+.|+|.=. |.|.++ .....++..+...++|+++.+.|.|.++|.
T Consensus 42 ~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v---------------~~~~~I~~~i~~~~~~V~t~~~G~AaSag~ 101 (203)
T 3qwd_A 42 NSIVSQLLFLQAQDSEKDIYLYIN-----SPGGSV---------------TAGFAIYDTIQHIKPDVQTICIGMAASMGS 101 (203)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEe-----CCCCCH---------------HHHHHHHHHHHHhcCCcEEEEeeeehhHHH
Confidence 567788888887666665554332 233332 122345566677899999999999999999
Q ss_pred HHHhhCC--EEEEcCCeEEeCccccccccCCcchh---------------hhhhhh--cCHHHHHHHHhcCCCCCHHHHH
Q 030277 83 EMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRL--VGKSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 83 ~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~~~--~g~~~a~~l~l~g~~~~a~ea~ 143 (180)
.++++|| .|++.+++.+.++...-|......-. ..+.+. .......+++.....++|+||+
T Consensus 102 ~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~ 181 (203)
T 3qwd_A 102 FLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181 (203)
T ss_dssp HHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHH
T ss_pred HHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHH
Confidence 9999999 69999999999887643321111000 011222 2244555666667789999999
Q ss_pred hcCccceecCCc
Q 030277 144 SLGLVNYYVPAG 155 (180)
Q Consensus 144 ~~Glv~~v~~~~ 155 (180)
++||||+|.++.
T Consensus 182 e~GliD~I~~~~ 193 (203)
T 3qwd_A 182 EYGLIDEVMVPE 193 (203)
T ss_dssp HHTSCSEECCCC
T ss_pred HcCCcCEecCCc
Confidence 999999999764
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-10 Score=84.54 Aligned_cols=132 Identities=8% Similarity=-0.023 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|..++.++. +.|+|.=. |.|.++ ..-..++..+...++|+++.+.|.|.++|+
T Consensus 54 ~~i~~~L~~l~~~~~-k~I~l~IN-----SPGGsv---------------~a~~~I~~~i~~~~~pV~t~v~g~AAS~g~ 112 (215)
T 2f6i_A 54 DELISQLLYLDNINH-NDIKIYIN-----SPGGSI---------------NEGLAILDIFNYIKSDIQTISFGLVASMAS 112 (215)
T ss_dssp HHHHHHHHHHHHHCC-SCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCC-CcEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEeeEhHhHHH
Confidence 467778888876555 65555443 233332 122345666777889999999999999999
Q ss_pred HHHhhCCE--EEEcCCeEEeCccccccccC---Ccch----hh--------hhhhh--cCHHHHHHHHhcCCCCCHHHHH
Q 030277 83 EMALACDL--RICGEAALLGLPETGLAIIP---GAGG----TQ--------RLPRL--VGKSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 83 ~l~~~~D~--~i~~~~~~~~~~e~~~G~~p---~~~~----~~--------~l~~~--~g~~~a~~l~l~g~~~~a~ea~ 143 (180)
.++++||. |++.|++.+++.....|... +... .. .+.+. .......+++.....++++||+
T Consensus 113 ~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~ 192 (215)
T 2f6i_A 113 VILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAK 192 (215)
T ss_dssp HHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHH
T ss_pred HHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHH
Confidence 99999999 99999999998776433211 1000 00 01111 2344555555556678999999
Q ss_pred hcCccceecCCc
Q 030277 144 SLGLVNYYVPAG 155 (180)
Q Consensus 144 ~~Glv~~v~~~~ 155 (180)
++||||++.++.
T Consensus 193 e~GLiD~I~~~~ 204 (215)
T 2f6i_A 193 QYGIIDEVIETK 204 (215)
T ss_dssp HHTSCSEECCCS
T ss_pred HCCCCCEecCCc
Confidence 999999999653
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=84.47 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|..++.++..+.|+|.=. |.|.++ .....++..+...++||++.+.|.|.++|+
T Consensus 97 ~~iiaqL~~l~~ed~~k~I~L~IN-----SPGGsV---------------~ag~aIyd~I~~~k~pV~t~v~G~AASaG~ 156 (277)
T 1tg6_A 97 SLVIAQLLFLQSESNKKPIHMYIN-----SPGGVV---------------TAGLAIYDTMQYILNPICTWCVGQAASMGS 156 (277)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSCSCEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCH---------------HHHHHHHHHHHhcCCCEEEEEccEeHHHHH
Confidence 456778887766545566666443 333332 112345556667889999999999999999
Q ss_pred HHHhhCCE--EEEcCCeEEeCccccccccCCcchhh---------------hhhhh--cCHHHHHHHHhcCCCCCHHHHH
Q 030277 83 EMALACDL--RICGEAALLGLPETGLAIIPGAGGTQ---------------RLPRL--VGKSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 83 ~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~~~---------------~l~~~--~g~~~a~~l~l~g~~~~a~ea~ 143 (180)
.+++++|. |++.+++.++.....-|......-.. .+.+. .......+++..+..++++||+
T Consensus 157 ~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAl 236 (277)
T 1tg6_A 157 LLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQ 236 (277)
T ss_dssp HHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHH
T ss_pred HHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHH
Confidence 99999999 99999999988776433321100000 11111 2234455555556778999999
Q ss_pred hcCccceecCC
Q 030277 144 SLGLVNYYVPA 154 (180)
Q Consensus 144 ~~Glv~~v~~~ 154 (180)
++||||++.+.
T Consensus 237 e~GLID~I~~~ 247 (277)
T 1tg6_A 237 EFGILDKVLVH 247 (277)
T ss_dssp HHTSCSEECSS
T ss_pred HCCCCCEecCc
Confidence 99999999975
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=9.7e-10 Score=81.92 Aligned_cols=132 Identities=8% Similarity=0.003 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|..++.++..+.|+|.=. |.|.++ .....++..+...++|+++.+.|.|.++|.
T Consensus 45 ~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v---------------~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~ 104 (201)
T 3p2l_A 45 NLVIAQLLFLESEDPDKDIYFYIN-----SPGGMV---------------TAGMGVYDTMQFIKPDVSTICIGLAASMGS 104 (201)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH---------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCH---------------HHHHHHHHHHHHhCCCeEEEEcCEehhHHH
Confidence 467778888886665565555433 333332 122345666777889999999999999999
Q ss_pred HHHhhCCE--EEEcCCeEEeCccccccccCCcc---------------hhhhhhhhc--CHHHHHHHHhcCCCCCHHHHH
Q 030277 83 EMALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRLPRLV--GKSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 83 ~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~~~~--g~~~a~~l~l~g~~~~a~ea~ 143 (180)
.+++++|. |++.+++.+.++...-|...... ....+.+.. ......+++.....++|+||+
T Consensus 105 ~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~ 184 (201)
T 3p2l_A 105 LLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAK 184 (201)
T ss_dssp HHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHH
T ss_pred HHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHH
Confidence 99999998 99999999988877533211100 000111221 234444554445568999999
Q ss_pred hcCccceecCC
Q 030277 144 SLGLVNYYVPA 154 (180)
Q Consensus 144 ~~Glv~~v~~~ 154 (180)
++||||+++++
T Consensus 185 e~GliD~I~~~ 195 (201)
T 3p2l_A 185 AYGLIDHVIES 195 (201)
T ss_dssp HHTSCSEECCC
T ss_pred HcCCccEecCC
Confidence 99999999975
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7.2e-09 Score=88.89 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEec-CCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAG-ADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
.+++.+.|+.++.|+.++.|+|.-. |.| .++.. ...+++.+..+...+|||||..++ +..+
T Consensus 72 ~~~i~~~L~~a~~d~~ik~I~L~in-----spGgG~v~~------------~~~I~~~i~~~k~~gkpvva~~~~-aas~ 133 (593)
T 3bf0_A 72 LFDIVNTIRQAKDDRNITGIVMDLK-----NFAGGDQPS------------MQYIGKALKEFRDSGKPVYAVGEN-YSQG 133 (593)
T ss_dssp HHHHHHHHHHHHHCTTCCCEEEECT-----EEEECCHHH------------HHHHHHHHHHHHHTTCCEEEEESC-EEHH
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeC-----CCCCCcHHH------------HHHHHHHHHHHHhcCCeEEEEEcc-chhH
Confidence 3578889999999999999999875 334 44322 245667777777778999999875 6778
Q ss_pred hHHHHhhCCEEEEcCCeEEeCcccc
Q 030277 81 GLEMALACDLRICGEAALLGLPETG 105 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~ 105 (180)
|+-|+++||.+++.|.+.++...+.
T Consensus 134 ~y~lAsaad~i~~~P~~~vg~~g~~ 158 (593)
T 3bf0_A 134 QYYLASFANKIWLSPQGVVDLHGFA 158 (593)
T ss_dssp HHHHHTTSSEEEECTTCCEECCCCB
T ss_pred HHHHHHhCCEEEECCCceEEEeccc
Confidence 8999999999999999998887764
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.4e-08 Score=71.46 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccc-cCCcc-h--------------hhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAI-IPGAG-G--------------TQR 117 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~-~p~~~-~--------------~~~ 117 (180)
..++..+...+.||...+-|.|.+.|..|++++| .|++.|++.+.+....-|. ..... . ...
T Consensus 86 laIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~i 165 (205)
T 4gm2_A 86 ISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEI 165 (205)
T ss_dssp HHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778899999999999999999999999 5999999999888776544 11110 0 011
Q ss_pred hhhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 118 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 118 l~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+.+..| .....+.+.....++|+||+++||||+|++.|
T Consensus 166 ya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e 205 (205)
T 4gm2_A 166 ISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205 (205)
T ss_dssp HHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred HHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence 111111 33344445556689999999999999998754
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-07 Score=78.02 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=72.8
Q ss_pred HHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHH-hcCC
Q 030277 58 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII-FTGR 135 (180)
Q Consensus 58 ~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~-l~g~ 135 (180)
....+....+|+|+++.|+|.|||... ..||++|+.++ +.+++.... ++- ...-...++...+.+++ .+|+
T Consensus 173 ~~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~----~~~~~~~~d~~~A~el~~~tge 245 (587)
T 1pix_A 173 RNAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMG----GMNPKGHVDLEYANEIADMVDR 245 (587)
T ss_dssp HHHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCC----SCCSSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHh----hhccccccchhHHHHHHHHhCC
Confidence 355567789999999999999999999 99999988875 887763331 110 00011126889999999 8898
Q ss_pred CCCHHH-----H--HhcCccceecCCch-HHHHHHHHHHH
Q 030277 136 KVSGKD-----A--MSLGLVNYYVPAGQ-AQLKALEIAQE 167 (180)
Q Consensus 136 ~~~a~e-----a--~~~Glv~~v~~~~~-~~~~a~~~a~~ 167 (180)
.+++++ . .+.|++|.++++++ ..+.++++...
T Consensus 246 ~v~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~ls~ 285 (587)
T 1pix_A 246 TGKTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGM 285 (587)
T ss_dssp TCCCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHT
T ss_pred ccChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHHHh
Confidence 887665 2 36899999998865 44444444433
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.8e-05 Score=59.96 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHH-HHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
.+.++++.+.+. .+-+|.+..++| .- +++.... ..+..+...+.++.....|.|+.+.|+|.||+.
T Consensus 144 K~~r~ie~A~~~-~lPlI~l~dsgG------ar------~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~ 210 (285)
T 2f9i_B 144 KICRIIDYCTEN-RLPFILFSASGG------AR------MQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVS 210 (285)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEEECS------CC------GGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCC------cc------hhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHH
Confidence 455666766655 455666655422 21 1111111 122344456666777899999999999999985
Q ss_pred H-HHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHH
Q 030277 83 E-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 161 (180)
Q Consensus 83 ~-l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a 161 (180)
. +++.+|++++.+++.+++-..+. ....+.+.++ -.--+++.+.+.|+||.|++++++.+..
T Consensus 211 as~a~~~D~i~a~p~A~i~~aGP~v-------i~~~~~~~~~----------e~~~~Ae~~~~~G~iD~Iv~~~e~r~~l 273 (285)
T 2f9i_B 211 ASFASVGDINLSEPKALIGFAGRRV-------IEQTINEKLP----------DDFQTAEFLLEHGQLDKVVHRNDMRQTL 273 (285)
T ss_dssp TTGGGCCSEEEECTTCBEESSCHHH-------HHHHHTSCCC----------TTTTBHHHHHHTTCCSEECCGGGHHHHH
T ss_pred HHhhhCCCEEEEeCCcEEEEcCHHH-------HHHHhcccch----------HhHhhHHHHHhcCCccEEeChHHHHHHH
Confidence 4 48899999999998877633321 1111111111 0111477788999999999988877777
Q ss_pred HHHHHHH
Q 030277 162 LEIAQEI 168 (180)
Q Consensus 162 ~~~a~~~ 168 (180)
.++..-+
T Consensus 274 ~~~L~~l 280 (285)
T 2f9i_B 274 SEILKIH 280 (285)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666544
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-05 Score=62.57 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH--
Q 030277 66 PIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA-- 142 (180)
Q Consensus 66 ~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea-- 142 (180)
..|+|+.+.|+|.||+......||++|+.++ +.+++. |+...+. .+|+.+++++.
T Consensus 169 ~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~~--~~ge~v~~e~LGG 226 (530)
T 3iav_A 169 VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIKT--VTGEDVGFEELGG 226 (530)
T ss_dssp TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHB
T ss_pred CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHHH--HhCCcCChhhcch
Confidence 3899999999999999888889999999876 777653 2222222 46888888876
Q ss_pred -----HhcCccceecCCc-hHHHHHHHHHHHHh
Q 030277 143 -----MSLGLVNYYVPAG-QAQLKALEIAQEIN 169 (180)
Q Consensus 143 -----~~~Glv~~v~~~~-~~~~~a~~~a~~~~ 169 (180)
...|++|.+++++ +..+.++++..-+-
T Consensus 227 a~~h~~~sGv~d~va~de~~a~~~~r~~ls~lp 259 (530)
T 3iav_A 227 ARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLP 259 (530)
T ss_dssp HHHHHHTSCCCSEEESSHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccCceeEEecChHHHHHHHHHHHHhcc
Confidence 6899999999875 46677777766653
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=61.82 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH-
Q 030277 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA- 142 (180)
Q Consensus 65 ~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea- 142 (180)
-..|+|+++.|+|.||+......||++|+.++ +.+++. |+...+. .+|+.+++++.
T Consensus 176 ~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~E~LG 233 (531)
T 3n6r_B 176 GVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVKT--VTNEQVSAEELG 233 (531)
T ss_dssp TTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH--HHCCCCCHHHHH
T ss_pred CCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHHH--HhCCccChhhcc
Confidence 45899999999999999877778999999986 665541 2222222 46899999998
Q ss_pred ------HhcCccceecCCc-hHHHHHHHHHHHH
Q 030277 143 ------MSLGLVNYYVPAG-QAQLKALEIAQEI 168 (180)
Q Consensus 143 ------~~~Glv~~v~~~~-~~~~~a~~~a~~~ 168 (180)
.+.|++|.+++++ +..+.++++..-+
T Consensus 234 Ga~~h~~~sG~~d~v~~~e~~a~~~~r~lls~L 266 (531)
T 3n6r_B 234 GATTHTRKSSVADAAFENDVEALAEVRRLVDFL 266 (531)
T ss_dssp BHHHHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred hHHHHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence 8999999999875 3455555554443
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00046 Score=58.20 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=79.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 83 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~ 83 (180)
.+.++++.+.+. .+-+|.+..+ .|..+.+- ......+.+.+.+.. .. .-..|.|+.+.|+|.||+..
T Consensus 118 Ki~ra~e~A~~~-~lP~I~l~~S------GGARmqeg----~~sl~~~~~i~~~~~-~~-s~~iP~Isvv~gp~~GG~a~ 184 (523)
T 1on3_A 118 KVVETMEQALLT-GTPFLFFYDS------GGARIQEG----IDSLSGYGKMFFANV-KL-SGVVPQIAIIAGPCAGGASY 184 (523)
T ss_dssp HHHHHHHHHHHH-TCCEEEEEEE------CSBCGGGT----HHHHHHHHHHHHHHH-HH-TTTSCEEEEEEEEEESGGGH
T ss_pred HHHHHHHHHHHc-CCCEEEEEcC------CCCChhhH----HHHHHHHHHHHHHHH-Hh-cCCCCEEEEEcCCCchHHHH
Confidence 455666666655 4456666553 34444331 111112222222222 22 34599999999999999988
Q ss_pred HHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHH-----HHH--hcCccceecCCc-
Q 030277 84 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-----DAM--SLGLVNYYVPAG- 155 (180)
Q Consensus 84 l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----ea~--~~Glv~~v~~~~- 155 (180)
....||++|+.+++.+++.. +..... .+|+.++.+ |.+ +.|++|.+++++
T Consensus 185 s~~l~D~ii~~~~a~i~~aG--------------------P~vI~~--~~ge~~~~e~lggae~h~~~~G~vd~vv~d~~ 242 (523)
T 1on3_A 185 SPALTDFIIMTKKAHMFITG--------------------PQVIKS--VTGEDVTADELGGAEAHMAISGNIHFVAEDDD 242 (523)
T ss_dssp HHHHSSEEEEETTCEEESSC--------------------HHHHHH--HHCCCCCHHHHHSHHHHHHTTCCCSEEESSHH
T ss_pred HHhhCCeEEEeCCCEEEecC--------------------HHHHHH--HhCCcCChHhcccHHHHhhccCceEEEeCCHH
Confidence 88999999999998876542 222211 346666653 323 689999999864
Q ss_pred hHHHHHHHHHHHHh
Q 030277 156 QAQLKALEIAQEIN 169 (180)
Q Consensus 156 ~~~~~a~~~a~~~~ 169 (180)
+..+.++++..-+-
T Consensus 243 ~~~~~~r~lL~~lp 256 (523)
T 1on3_A 243 AAELIAKKLLSFLP 256 (523)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcC
Confidence 46666666655543
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0002 Score=60.59 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=62.8
Q ss_pred HHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCC
Q 030277 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV 137 (180)
Q Consensus 59 ~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~ 137 (180)
...+.....|+|+.+.|+|.|||......||++++.++ +.+++ . |+...+. .+|+.+
T Consensus 190 ~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~-------a-------------GP~vik~--~~ge~~ 247 (555)
T 3u9r_B 190 QANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL-------A-------------GPPLVKA--ATGEVV 247 (555)
T ss_dssp HHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS-------S-------------CHHHHHH--HHCCCC
T ss_pred HHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE-------c-------------cHHHHHH--HhcCcc
Confidence 33455678999999999999999999999999887754 54332 1 2222111 478999
Q ss_pred CHHHH-------HhcCccceecCCch-HHHHHHHHHHHH
Q 030277 138 SGKDA-------MSLGLVNYYVPAGQ-AQLKALEIAQEI 168 (180)
Q Consensus 138 ~a~ea-------~~~Glv~~v~~~~~-~~~~a~~~a~~~ 168 (180)
++++. .+.|++|.++++++ ..+.++++..-+
T Consensus 248 ~~e~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~L 286 (555)
T 3u9r_B 248 SAEELGGADVHCKVSGVADHYAEDDDHALAIARRCVANL 286 (555)
T ss_dssp CHHHHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHTS
T ss_pred ChhhccchhhhhhccCceeEEeCCHHHHHHHHHHHHHhC
Confidence 99998 78999999998753 334455544443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00052 Score=57.89 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=80.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 83 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~ 83 (180)
.+.++++.+.+. .+-+|.+..+ .|..+.+- ......+.+.+.+.. .. .-..|.|+.+.|+|.||+..
T Consensus 114 Ki~ra~e~A~~~-~~P~I~l~~S------GGaRmqeg----~~sl~~~~~i~~~~~-~~-s~~iP~Isvv~gp~~GG~a~ 180 (522)
T 1x0u_A 114 KIVRAYELALKV-GAPVVGINDS------GGARIQEG----ALSLEGYGAVFKMNV-MA-SGVIPQITIMAGPAAGGAVY 180 (522)
T ss_dssp HHHHHHHHHHHH-TCCEEEEECC------CSBCGGGT----HHHHHHHHHHHHHHH-HH-TTTSCEEEEECSEEEGGGGH
T ss_pred HHHHHHHHHHHc-CCCEEEEEcC------CCCChhHH----HHHHHHHHHHHHHHH-Hh-CCCCcEEEEEcCCCchHHHH
Confidence 456666666654 4556776654 24444321 111112222222222 22 34599999999999999998
Q ss_pred HHhhCCEEEEcCC-e-EEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHH-----HHH--hcCccceecCC
Q 030277 84 MALACDLRICGEA-A-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-----DAM--SLGLVNYYVPA 154 (180)
Q Consensus 84 l~~~~D~~i~~~~-~-~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----ea~--~~Glv~~v~~~ 154 (180)
....||++|+.++ + .+++. |+..... .+|+.++.+ |.+ +.|++|.++++
T Consensus 181 s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~~--~~ge~~~~e~lggae~~~~~~G~~d~vv~~ 238 (522)
T 1x0u_A 181 SPALTDFIIMIKGDAYYMFVT--------------------GPEITKV--VLGEEVSFQDLGGAVVHATKSGVVHFMVDS 238 (522)
T ss_dssp HHHHSSEEEEECSTTCEEESS--------------------CHHHHHH--TTCCCCCHHHHHBHHHHHHTTCCCSEEESC
T ss_pred HHhcCCeEEEecCCccEEEec--------------------CHHHHHH--HhCCcCChhhcchHHHHhhcCceeEEEeCC
Confidence 8899999999988 7 66552 1211111 356666653 322 68999999986
Q ss_pred -chHHHHHHHHHHHHhc
Q 030277 155 -GQAQLKALEIAQEINQ 170 (180)
Q Consensus 155 -~~~~~~a~~~a~~~~~ 170 (180)
.+..+.++++..-+-+
T Consensus 239 ~~~~~~~~~~ll~~lp~ 255 (522)
T 1x0u_A 239 EQEAINLTKRLLSYLPS 255 (522)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhccc
Confidence 4566667777665543
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00097 Score=56.50 Aligned_cols=130 Identities=22% Similarity=0.290 Sum_probs=77.8
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 83 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~ 83 (180)
.+.++++.+.+. .+-+|.|..+ .|..+.+- ......+.+.+.+.. .+ .-..|.|+.+.|+|.||+..
T Consensus 131 Ki~ra~e~A~~~-~lP~I~l~dS------GGARmqeg----~~sl~~~~~i~~~~~-~~-s~~iP~Isvv~gp~~GG~a~ 197 (548)
T 2bzr_A 131 KIVKVQELAIKT-GRPLIGINDG------AGARIQEG----VVSLGLYSRIFRNNI-LA-SGVIPQISLIMGAAAGGHVY 197 (548)
T ss_dssp HHHHHHHHHHHH-TCCEEEEECC------CSCCGGGT----THHHHHHHHHHHHHH-HT-TTTSCEEEEECSEEESGGGH
T ss_pred HHHHHHHHHHHc-CCCEEEEEcC------CCCCchhH----HHHHHHHHHHHHHHH-Hh-cCCCcEEEEecCCCchHHHH
Confidence 455666666655 4456666554 24444331 111112222222222 22 33489999999999999988
Q ss_pred HHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHH-----HH--HhcCccceecCCc
Q 030277 84 MALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-----DA--MSLGLVNYYVPAG 155 (180)
Q Consensus 84 l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----ea--~~~Glv~~v~~~~ 155 (180)
....||++|+.++ +.+++. |+...+. .+|+.++.+ |. .+.|++|.+++++
T Consensus 198 s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~lggae~h~~~sG~~d~vv~d~ 255 (548)
T 2bzr_A 198 SPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEELGGAHTHMAKSGTAHYAASGE 255 (548)
T ss_dssp HHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHHHTSSCCSEEESSH
T ss_pred HHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCChHhcccHHHHhhccCceeEEeCCH
Confidence 8889999999987 776654 2222222 346666653 32 3689999999864
Q ss_pred -hHHHHHHHHHHHH
Q 030277 156 -QAQLKALEIAQEI 168 (180)
Q Consensus 156 -~~~~~a~~~a~~~ 168 (180)
+..+.++++..-+
T Consensus 256 ~~~~~~~r~lls~l 269 (548)
T 2bzr_A 256 QDAFDYVRELLSYL 269 (548)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 4555555555444
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00013 Score=61.49 Aligned_cols=147 Identities=12% Similarity=0.065 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 83 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~ 83 (180)
...+.++.+++. .+-+|.|.-+ + .|..|.+ .+.....+.+..++..+.....|.|+.+-|.|.|||+.
T Consensus 348 K~ar~i~~a~~~-~~Plv~l~ds-~-G~~~G~~---------~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~ 415 (522)
T 1x0u_A 348 KAARFIRFCDAF-NIPLISLVDT-P-GYVPGTD---------QEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHI 415 (522)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEEE-C-CBCCSHH---------HHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred HHHHHHHHHhhC-CCCEEEEecC-C-CCCCchH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHH
Confidence 345566655544 4556666554 2 2443431 11112234555677778889999999999999999865
Q ss_pred HHhh----CCEEEEcCCeEEeCccccccccCCcchhhhhhhhc---------CHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 84 MALA----CDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV---------GKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 84 l~~~----~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~---------g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
-... +|++++.+++.+++-... +.+...+...+ -.....++-- .--++..+.+.|+||.
T Consensus 416 ~~a~~a~~~D~v~a~p~A~i~v~gpe------gaa~Il~r~~i~~~~d~~~~~~~l~~~y~~--~~~~~~~~~~~G~iD~ 487 (522)
T 1x0u_A 416 AMSIKSLGADLVYAWPTAEIAVTGPE------GAVRILYRKEIQQASNPDDVLKQRIAEYRK--LFANPYWAAEKGLVDD 487 (522)
T ss_dssp HTCCGGGTCSEEEECTTCEEESSCHH------HHHHHHTSSSSSSSSSSSSSSHHHHHHHHH--HHSSSHHHHHTTSSSE
T ss_pred HhcccccCCCEEEEeCCCEEEecCHH------HHHHHHhhhhhhcccCHHHHHHHHHHHHHH--hcCCHHHHHhcCCCcE
Confidence 4444 999999999888764332 11111111100 0111111100 0135678999999999
Q ss_pred ecCCchHHHHHHHHHHHHhc
Q 030277 151 YVPAGQAQLKALEIAQEINQ 170 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~ 170 (180)
|+++.++.+......+.+..
T Consensus 488 II~p~~tR~~L~~~L~~~~~ 507 (522)
T 1x0u_A 488 VIEPKDTRRVIVAGLEMLKT 507 (522)
T ss_dssp ECCGGGHHHHHHHHHHHHTT
T ss_pred eECHHHHHHHHHHHHHHHhh
Confidence 99998888777766666643
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=61.43 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhh----CCEEEEcCCeEEeCccccccccCCcchhhhhhhhc----
Q 030277 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV---- 122 (180)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~----~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~---- 122 (180)
..+.+..++..+.....|+|+.+-|.+.|+|+.-... +|++++.+++.++.-. |.+.+...+.+.+
T Consensus 388 ~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~Vm~------pegaa~Il~r~~~~~~~ 461 (527)
T 1vrg_A 388 IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMG------PEGAANIIFKREIEASS 461 (527)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC------HHHHHHHHTHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEecC------HHHHHHHHhhhhhhccc
Confidence 3455566777788899999999999999888644433 8999998888876322 2222222222211
Q ss_pred CHHHHHH-HHh--cCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhc
Q 030277 123 GKSVAKD-IIF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 170 (180)
Q Consensus 123 g~~~a~~-l~l--~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 170 (180)
.....++ +.- .-+.-++..+.+.|+||.|+++.+.........+.+..
T Consensus 462 d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~~ 512 (527)
T 1vrg_A 462 NPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCET 512 (527)
T ss_dssp CHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHhc
Confidence 1111111 221 01125678899999999999998887776666666543
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0028 Score=53.46 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=57.1
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHH--
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-- 140 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-- 140 (180)
.-..|+|+.+.|+|.|||......||++|+.++ +.+++. |+..... .+|+.++.+
T Consensus 168 s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~~--~~ge~v~~e~l 225 (527)
T 1vrg_A 168 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIKA--VTGEEISQEDL 225 (527)
T ss_dssp TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH--HHCCCCCHHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHHH--HhCCCCCcccc
Confidence 456999999999999999888889999999987 664431 2222211 346666653
Q ss_pred ---HHH--hcCccceecCCc-hHHHHHHHHHHHH
Q 030277 141 ---DAM--SLGLVNYYVPAG-QAQLKALEIAQEI 168 (180)
Q Consensus 141 ---ea~--~~Glv~~v~~~~-~~~~~a~~~a~~~ 168 (180)
|.+ +.|++|.+++++ +..+.++++..-+
T Consensus 226 ggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~l 259 (527)
T 1vrg_A 226 GGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYL 259 (527)
T ss_dssp HBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTTS
T ss_pred ccHHHHhhcccceEEEecCHHHHHHHHHHHHHhc
Confidence 322 689999999864 4555555554443
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00033 Score=59.78 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhh-----C--CEEEEcCCeEEeCccccccccCCcchhhhhhhhc
Q 030277 50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA-----C--DLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV 122 (180)
Q Consensus 50 ~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~-----~--D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~ 122 (180)
...+....++..+.....|+|+.|-|.++|||+ ++++ + |++++.+++.++.-. |.+.+...+....
T Consensus 428 Gi~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~Vm~------pegaa~Il~r~~~ 500 (587)
T 1pix_A 428 ELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIAVMN------GETAATAMYSRRL 500 (587)
T ss_dssp THHHHHHHHHHHHHTCCCCEEEEECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEESSC------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCccHHH-HHhcCcccCcccceeeeccCCeEecCC------HHHHHHHHHhhhh
Confidence 445677788889999999999999999998884 4444 5 999999888887422 2222222222211
Q ss_pred CH---------HH---HHHHHh-cCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhccC
Q 030277 123 GK---------SV---AKDIIF-TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 172 (180)
Q Consensus 123 g~---------~~---a~~l~l-~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 172 (180)
.. .. ..++.. --+..++..+.+.|+||.|+++.+.........+.+..++
T Consensus 501 ~~~~~~g~~~~~~~~~~~~~~~~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~ 563 (587)
T 1pix_A 501 AKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP 563 (587)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence 10 00 011110 0114789999999999999999888887777777666555
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00025 Score=59.76 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhh----CCEEEEcCCeEEeCccccccccCCcchhhhhhhh-c---
Q 030277 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-V--- 122 (180)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~----~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~-~--- 122 (180)
..+....++..+.....|+|+.|-|.++|+|+.-... +|++++.+++.++. .++-++...+.+. +
T Consensus 384 i~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~V-------m~pegaa~Il~r~~~~~~ 456 (523)
T 1on3_A 384 IIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV-------MGAEGAANVIFRKEIKAA 456 (523)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEe-------cCHHHHHHHHhhhhhhcc
Confidence 4455667777888899999999999999988654444 89988888887763 3222232222221 1
Q ss_pred -CHHHHHH-HHh--cCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhc
Q 030277 123 -GKSVAKD-IIF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 170 (180)
Q Consensus 123 -g~~~a~~-l~l--~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 170 (180)
.....++ +.- .-..-++..+.+.|+||.|+++.+.........+.+..
T Consensus 457 ~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~~ 508 (523)
T 1on3_A 457 DDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT 508 (523)
T ss_dssp SCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHhc
Confidence 1111111 221 00124678899999999999998887776666665543
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00062 Score=57.70 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCH--
Q 030277 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK-- 124 (180)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~-- 124 (180)
..+....++..+.....|+|+.|-|.++|+|+.-.. .+|++++.+++.++.-.. .+.+...+...+-.
T Consensus 405 i~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~Vmgp------egaa~Il~r~~~~~~~ 478 (548)
T 2bzr_A 405 IIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGA------SGAVGFVYRQQLAEAA 478 (548)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCH------HHHHHHHTCCC-----
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEecCH------HHHHHHHhhhHHhhhh
Confidence 344556677778889999999999999998864443 399999999888774222 22222222211110
Q ss_pred ------HHHH-HHHhc--CCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHh
Q 030277 125 ------SVAK-DIIFT--GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169 (180)
Q Consensus 125 ------~~a~-~l~l~--g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~ 169 (180)
...+ ++.-. -..-++..+.+.|+||.|+++.+.........+.+.
T Consensus 479 ~~g~~~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~ 532 (548)
T 2bzr_A 479 ANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLLE 532 (548)
T ss_dssp -----CHHHHHHHHHHHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHHHh
Confidence 0111 12110 001346779999999999999887777665555554
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.003 Score=53.87 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=63.9
Q ss_pred HHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccc--cccCCcchhhhhhhhcCHHHHHHHHhcCCCC
Q 030277 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL--AIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV 137 (180)
Q Consensus 60 ~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~--G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~ 137 (180)
..+.....|+|+.+.|.|.|||...++++|++++.+++.+++...++ |+-|.+.....-+..+......+-..+.+.+
T Consensus 176 ~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g~~~~~~~~~~~~~~~ge~~vs~eeL 255 (588)
T 3gf3_A 176 SELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAP 255 (588)
T ss_dssp HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCT
T ss_pred HHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccccccccchhhhhhhhccccccChhhc
Confidence 34556789999999999999987668888888888988887754431 2112111000000000011111111366677
Q ss_pred CHHHHH--hcCccceecCCch-HHHHHHHHHHHH
Q 030277 138 SGKDAM--SLGLVNYYVPAGQ-AQLKALEIAQEI 168 (180)
Q Consensus 138 ~a~ea~--~~Glv~~v~~~~~-~~~~a~~~a~~~ 168 (180)
.+.+.+ ..|.+|.++++++ ..+.++++..-+
T Consensus 256 GGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~L 289 (588)
T 3gf3_A 256 GSVPIHYDETGFFREVYQNDLGVIDGIKKYISYL 289 (588)
T ss_dssp TBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred cchhhhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence 777776 5899999998763 445555555444
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00054 Score=57.78 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC--
Q 030277 50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-- 123 (180)
Q Consensus 50 ~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g-- 123 (180)
...+....++..+...+.|+|+.|-|.++|+|+.-.. .+|++++.+++.++.-.. .+.+...+.+.+-
T Consensus 395 Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~Vm~p------egaa~Il~r~~~~~~ 468 (531)
T 3n6r_B 395 GVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMGA------KGATEIIHRGDLGDP 468 (531)
T ss_dssp THHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCH------HHHHHHHCCTTTTST
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEecCCH------HHHHHHHhcccccch
Confidence 3456667888889999999999999999998864433 399999998888775322 1111111221111
Q ss_pred ---HHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHH
Q 030277 124 ---KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168 (180)
Q Consensus 124 ---~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~ 168 (180)
.....++- -+.-++..|.+.|+||.|+++.+.........+.+
T Consensus 469 ~~~~~~~~~y~--~~~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~~~ 514 (531)
T 3n6r_B 469 EKIAQHTADYE--ERFANPFVASERGFVDEVIQPRSTRKRVARAFASL 514 (531)
T ss_dssp THHHHHHHHHH--HHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHTT
T ss_pred hHHHHHHHHHH--HHhcCHHHHHhcCccCcccCHHHHHHHHHHHHHHH
Confidence 11111111 11135667889999999999988876655444433
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00078 Score=56.81 Aligned_cols=114 Identities=13% Similarity=0.159 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhh-----CCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA-----CDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG 123 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~-----~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g 123 (180)
....+....++..+.....|+|+.|-|.++|||+ ++++ +|++++.+++.++.-.. .+.+...+.+.+-
T Consensus 388 ~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~Vm~~------egaa~il~r~~~~ 460 (530)
T 3iav_A 388 DGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAVMGA------QGAVNILHRRTIA 460 (530)
T ss_dssp TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEESSCH------HHHHHHHTSTTTS
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEecCCH------HHHHHHHhhhhhh
Confidence 3345666778888899999999999999998775 4443 79999999988875322 1211212221111
Q ss_pred ------HHHHHHHHhc--CCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHh
Q 030277 124 ------KSVAKDIIFT--GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169 (180)
Q Consensus 124 ------~~~a~~l~l~--g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~ 169 (180)
...-.++.-. -+.-++..|.+.|+||.|+++.+.........+.+.
T Consensus 461 ~~~~d~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~ 514 (530)
T 3iav_A 461 DAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR 514 (530)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHh
Confidence 1111112111 112367788899999999999988776555554443
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0038 Score=53.26 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhC-------CEEEEcCCeEEeCccccccccCCcchhhhhhhh
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC-------DLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 121 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~-------D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~ 121 (180)
....+....++..+....+|+|+.|-|.++|+|. +++++ |++++.+++.++.-. |.+.+...+.+.
T Consensus 429 ~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~sVm~------pEgaa~Il~~~~ 501 (588)
T 3gf3_A 429 AELLGLGQSLIYSIENSKLPSLEITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYYVMP------GETAANAMYSRK 501 (588)
T ss_dssp TTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEESSC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCCccHHHH-HHhcccccCCccceEEECCCceEEeCC------HHHHHHHHhhhH
Confidence 3445667788889999999999999999988875 44443 378888888776422 222222223221
Q ss_pred cCH------------HHHHHHHh-cCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhccC
Q 030277 122 VGK------------SVAKDIIF-TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 172 (180)
Q Consensus 122 ~g~------------~~a~~l~l-~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 172 (180)
+-. ....++.- --+..++.-|.+.|+||.|+++.+.......+.+...++|
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~~~p 565 (588)
T 3gf3_A 502 LVKAKKAGEDLQPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNP 565 (588)
T ss_dssp HHHC-------CHHHHHHHHHHHHHHHTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC
T ss_pred HhhhhccccccchHHHHHHHHHHHHHHhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHHHcCC
Confidence 110 01111110 0113578899999999999999999888777776665544
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0038 Score=54.47 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCC--CHHH-
Q 030277 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV--SGKD- 141 (180)
Q Consensus 65 ~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~--~a~e- 141 (180)
...|+|+.+.|+|.|||..+...||++|+.+++.+. +. |++.... .+|+.+ +.++
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~if-------lt-------------GP~vIk~--~tGeeV~~s~eeL 302 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII-------LT-------------GAPAINK--MLGREVYTSNLQL 302 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEE-------SS-------------CHHHHHH--HHTSCCCSCTHHH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEE-------Ee-------------CHHHHHH--HhCCccccCchhc
Confidence 567999999999999999999999999999886433 21 1111111 145544 4333
Q ss_pred -----HHhcCccceecCCchHHHHHHHHHHHHh
Q 030277 142 -----AMSLGLVNYYVPAGQAQLKALEIAQEIN 169 (180)
Q Consensus 142 -----a~~~Glv~~v~~~~~~~~~a~~~a~~~~ 169 (180)
...-|.+|.+++++. ++...++++.
T Consensus 303 GGA~vh~~sGvad~va~dd~---eal~~ir~lL 332 (758)
T 3k8x_A 303 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWM 332 (758)
T ss_dssp HSHHHHTTTTSSSEEESSHH---HHHHHHHHHH
T ss_pred chhhHHHhcCCeeEEecCHH---HHHHHHHHHH
Confidence 236899999998752 4444444443
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0073 Score=51.18 Aligned_cols=147 Identities=13% Similarity=0.069 Sum_probs=84.9
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHH
Q 030277 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 85 (180)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~ 85 (180)
.+.++.+++. ++-+|.|.-. + .|..|.+ .+.....+....++..+...+.|+|+.+-|.++|+|..-.
T Consensus 377 arfi~~c~~~-~iPlv~lvDt-p-Gf~~G~~---------~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am 444 (555)
T 3u9r_B 377 AHFIELACQR-GIPLLFLQNI-T-GFMVGQK---------YEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGM 444 (555)
T ss_dssp HHHHHHHHHH-TCCEEEEEEE-C-CBCCSHH---------HHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHT
T ss_pred HHHHHHHhcC-CCCEEEEecC-c-CCCCCHH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhh
Confidence 3444444433 4455555544 2 2554532 2223335566778888999999999999999988874332
Q ss_pred ----hhCCEEEEcCCeEEeCccccccccCCcchhhhhh---hh-c-------CHH--HH-HH-HHhc-CCCCCHHHHHhc
Q 030277 86 ----LACDLRICGEAALLGLPETGLAIIPGAGGTQRLP---RL-V-------GKS--VA-KD-IIFT-GRKVSGKDAMSL 145 (180)
Q Consensus 86 ----~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~---~~-~-------g~~--~a-~~-l~l~-g~~~~a~ea~~~ 145 (180)
+.+|++++.+++.++.- .+-++...+. +. + ... .+ ++ +.-. -+..++..+.+.
T Consensus 445 ~~~~~~~d~~~a~p~A~i~Vm-------gpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~p~~aa~r 517 (555)
T 3u9r_B 445 CGRAYDPRFLWMWPNARIGVM-------GGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQYEHQGHPYYSSAR 517 (555)
T ss_dssp TCGGGCCSEEEECTTCEEESS-------CHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHSHHHHHHT
T ss_pred cCccCCCCeEEEcCCcEEEcC-------CHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHhCCHHHHhhc
Confidence 23799999888888743 2222222221 10 0 000 00 00 1000 112467778889
Q ss_pred CccceecCCchHHHHHHHHHHHHhcc
Q 030277 146 GLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 146 Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
|+||.|+++.+.........+.+..+
T Consensus 518 ~~vD~vIdP~~TR~~l~~~l~~~~~~ 543 (555)
T 3u9r_B 518 LWDDGVIDPAQTREVLALALSAALNA 543 (555)
T ss_dssp TSSSCBCCGGGHHHHHHHHHHHHTTS
T ss_pred cccCcccChHHHHHHHHHHHHHHhcC
Confidence 99999999998877765555544443
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0087 Score=52.60 Aligned_cols=37 Identities=27% Similarity=0.150 Sum_probs=33.3
Q ss_pred CCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeC
Q 030277 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL 101 (180)
Q Consensus 65 ~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~ 101 (180)
...|+|+.+.|.|.|+|..+...||++|+.+++.+.+
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l 294 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL 294 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence 4699999999999999999999999999999876553
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.089 Score=46.33 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEE--CCccchhhHHHH---hhCCE--EEEcCCeEEeC
Q 030277 48 IHFYVNTLRSTFSFLEALPIPTIAVI--DGAALGGGLEMA---LACDL--RICGEAALLGL 101 (180)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~kp~Ia~v--~G~~~g~G~~l~---~~~D~--~i~~~~~~~~~ 101 (180)
.....+....++..+.....|+|+.| .|.+.||++... +..|+ +++.+++.++.
T Consensus 503 ~~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V 563 (793)
T 2x24_A 503 YDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV 563 (793)
T ss_dssp HTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred HhhHHHHHHHHHHHHHhcCCCEEEEEecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence 33456677788999999999999999 898877654332 34666 67777776664
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=91.15 E-value=0.33 Score=42.50 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEC--CccchhhHHHHhh----CCE--EEEcCCeEEeCc
Q 030277 48 IHFYVNTLRSTFSFLEALPIPTIAVID--GAALGGGLEMALA----CDL--RICGEAALLGLP 102 (180)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~kp~Ia~v~--G~~~g~G~~l~~~----~D~--~i~~~~~~~~~~ 102 (180)
.....+....++..+...+.|+|+.|- |.+.||++ +++. +|+ +++.+++.++.-
T Consensus 489 ~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isVM 550 (758)
T 3k8x_A 489 FNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW-VVVDPTINADQMEMYADVNARAGVL 550 (758)
T ss_dssp HTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEESS
T ss_pred HccHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEcc
Confidence 334566777889999999999999998 88988776 5554 565 778777777653
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=82.96 E-value=4 Score=31.40 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
.+.+.|+.+++||+.++|++-+.+. .| .+ ... ..+.+. ...||+|+..-|.+-
T Consensus 186 ~~~d~l~~~~~D~~t~~I~l~~E~~------~~--------~~---~~~---~~~~~~--~~~KPVv~~k~G~~~ 238 (288)
T 1oi7_A 186 TFKDLLPLFNEDPETEAVVLIGEIG------GS--------DE---EEA---AAWVKD--HMKKPVVGFIGGRSA 238 (288)
T ss_dssp CHHHHHHHHHTCTTCCEEEEEECSS------SS--------HH---HHH---HHHHHH--HCCSCEEEEESCC--
T ss_pred CHHHHHHHHhcCCCCCEEEEEEeeC------CC--------HH---HHH---HHHHHh--cCCCCEEEEEecCCC
Confidence 3568899999999999999998731 11 11 111 112222 579999999999876
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=3.2 Score=31.90 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+.+||+.++|++-+.+.+ +.++ ..+ .+.+. ...||+|+..-|.+-
T Consensus 187 ~~d~l~~l~~D~~t~~I~l~~E~~~--------------~~~~---~~~---~~~~~--~~~KPVv~~k~G~~~ 238 (288)
T 2nu8_A 187 FIDILEMFEKDPQTEAIVMIGEIGG--------------SAEE---EAA---AYIKE--HVTKPVVGYIAGVTA 238 (288)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEESSS--------------SHHH---HHH---HHHHH--HCCSCEEEEEECTTC
T ss_pred HHHHHHHHhcCCCCCEEEEEEeeCC--------------CHHH---HHH---HHHHh--cCCCCEEEEEeCCCC
Confidence 5678888899999999999886311 1111 111 12222 579999999988875
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=81.82 E-value=3.2 Score=32.84 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHh--cCCCcEEEEECCccch
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLE--ALPIPTIAVIDGAALG 79 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kp~Ia~v~G~~~g 79 (180)
+.+.|+.+++||+.++|++-|.-+ |. .+ ++ +.+.+. +..||+|+..-|.+-.
T Consensus 211 ~~D~l~~~~~Dp~T~~I~l~gEi~-----g~----------~e-~~-------~~~~~r~~~~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 211 FMDHVLRYQDTPGVKMIVVLGEIG-----GT----------EE-YK-------ICRGIKEGRLTKPIVCWCIGTCAT 264 (334)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEESS-----SS----------HH-HH-------HHHHHHTTSCCSCEEEEEECTTCC
T ss_pred HHHHHHHHhcCCCCCEEEEEEecC-----Ch----------HH-HH-------HHHHHHhhcCCCCEEEEEcCCCcc
Confidence 567889999999999999987521 11 11 22 222332 4789999999888753
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=80.96 E-value=2.6 Score=32.75 Aligned_cols=56 Identities=9% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+++||+.++|++-+.+.+ | .+.+..++++ ..++ ....||+|+..-|.+-
T Consensus 195 ~~d~l~~~~~Dp~T~~I~l~~E~~g------~-------~e~~~~~f~~----~~~~-~~~~KPVv~~k~G~s~ 250 (305)
T 2fp4_A 195 FTDCLEIFLNDPATEGIILIGEIGG------N-------AEENAAEFLK----QHNS-GPKSKPVVSFIAGLTA 250 (305)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEESSS------S-------HHHHHHHHHH----HHSC-STTCCCEEEEEECTTC
T ss_pred HHHHHHHHhcCCCCcEEEEEEecCC------c-------hhhHHHHHHH----HHHH-hcCCCCEEEEEecCCc
Confidence 5678899999999999999887311 0 1122222222 2222 3458999999988775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 180 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 5e-39 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 3e-17 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 1e-14 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 6e-13 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 6e-08 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 2e-07 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 4e-06 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 1e-05 | |
| d1ef8a_ | 261 | c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc | 1e-04 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 0.001 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 131 bits (331), Expect = 5e-39
Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
++ L A ET ED + ++ + K F AGAD+KE + + Y S +
Sbjct: 35 LIEELNQALETFEEDPAVGA-IVLTGGEKAFAAGADIKEMQNRTF--QDCYSGKFLSHWD 91
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ + P IA ++G ALGGG E+A+ CD+ GE A G PE L IPGAGGTQRL R
Sbjct: 92 HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTR 151
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLG 146
VGKS+A +++ TG ++S +DA G
Sbjct: 152 AVGKSLAMEMVLTGDRISAQDAKQAG 177
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 74.4 bits (181), Expect = 3e-17
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 3/180 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAG--ADLKERRQMSPSEIHFYVNTLRST 58
M L A + + D V++ A L+ ++ E + + +L
Sbjct: 27 MALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRL 86
Query: 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 118
F + P PT+A ++G A+ GG +ALACDL + E A LG E A + L
Sbjct: 87 FHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVK-IGFVAALVSVIL 145
Query: 119 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 178
R VG+ AKD++ TGR V ++A +LGLVN P G+A +A +A+E+ + + R+
Sbjct: 146 VRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRL 205
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 1e-14
Identities = 78/156 (50%), Positives = 113/156 (72%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+++ L A + + D ++IRS VP +FCAGADLKER +MS SE+ +V+ +R+ +
Sbjct: 34 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 93
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 94 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 153
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156
+G S+AK++IF+ R + GK+A ++GL+++ + Q
Sbjct: 154 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 189
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.2 bits (152), Expect = 6e-13
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLR---- 56
R L F+ IS+DS V++ K+F +G DL + V +
Sbjct: 32 FWRELVECFQKISKDSDCRAVVVSG-AGKMFTSGIDLMDMASDILQPPGDDVARIAWYLR 90
Query: 57 -------STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGE 95
TF+ +E P P IA I G +GGG+++ ACD+R C +
Sbjct: 91 DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQ 136
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 48.9 bits (115), Expect = 6e-08
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
L L+ A + I D+S V++ S VF GAD+ E + +
Sbjct: 36 TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANK 94
Query: 61 FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 117
+PT+A I+G ALGGGLEM LA D R+ ++A +GLPE L I PG GGT R
Sbjct: 95 IFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVR 154
Query: 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 177
LPRL+G A + I +G++ +DA+ + V+ V A + AL++ +
Sbjct: 155 LPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA 214
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.4 bits (111), Expect = 2e-07
Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 13/187 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCA----------GADLKERRQMSPSEIHF 50
L E + +I+SS G D + + +
Sbjct: 33 DYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSN 92
Query: 51 YVNTLRSTFSFLEALPIPT-IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 109
+V + A +AL + + L P L +I
Sbjct: 93 FVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLI 152
Query: 110 PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL--EIAQE 167
G T LP G + + + + G ++ + +A ++ +E
Sbjct: 153 TEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEE 212
Query: 168 INQKVQS 174
+ +KV+
Sbjct: 213 LREKVKG 219
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 43.2 bits (100), Expect = 4e-06
Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
L + F I+ D VV++ + P +P + + + +
Sbjct: 41 AHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDF-TSFNLGTPHDWDEIIFEGQRLLN 99
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
L ++ +P IA ++G ++ + A P I+PG G P
Sbjct: 100 NLLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPH 159
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171
++G + + + TG+++ + A+ G VN + + +A E+A+ I +K
Sbjct: 160 VLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.0 bits (97), Expect = 1e-05
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 17/110 (15%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL-----------------KERRQM 43
+ L + VV++ + P G
Sbjct: 48 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTAD 107
Query: 44 SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC 93
+ + + +P I +++G A GGG + + CDL +
Sbjct: 108 TVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLA 157
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 1e-04
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 1/177 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFS 60
+ L A ++ +++ S KVF AG D+ E + + + LR
Sbjct: 32 FIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYD-DPLRQITR 90
Query: 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 120
++ P P I++++G+ GG EM ++ DL I + + L + G L R
Sbjct: 91 MIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTR 150
Query: 121 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 177
G + K++IFT ++ + A+++G++N+ V + + L++A I++K
Sbjct: 151 DAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA 207
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 36.3 bits (82), Expect = 0.001
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 6/156 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFY-----VNTL 55
++ + A ED S VMI + G L+E
Sbjct: 31 AMQEVTDALNRAEEDDSVGAVMITGAEDAFCA-GFYLREIPLDKGVAGVRDHFRIAALWW 89
Query: 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115
+ + P +A I+G A GGGL ++LA D+ IC ++A + I +
Sbjct: 90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATS 149
Query: 116 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 151
L R+VG A +++ T R + ++A GLV+
Sbjct: 150 YSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRV 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 180 | |||
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.76 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.73 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.6 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 98.55 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.53 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 98.21 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.19 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.09 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.9 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.9 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.87 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.77 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.44 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.39 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.26 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.13 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 97.04 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.01 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 92.12 | |
| d2csua2 | 161 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 83.08 |
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=1e-46 Score=287.65 Aligned_cols=179 Identities=25% Similarity=0.335 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.... .+....+.+.+++++..+.++|||+||+|||+|+|
T Consensus 28 ~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~G 107 (230)
T d2a7ka1 28 LETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIG 107 (230)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeeeccccccc
Confidence 57899999999999999999999998779999999999987653 44566777888999999999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||.++|++|++|. .++++++|..++++++++|++++++||+++||||+++|++++.+
T Consensus 108 gG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 186 (230)
T d2a7ka1 108 MGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLD 186 (230)
T ss_dssp HHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHH
T ss_pred ccccchhccchhhccccchhhhccccccccccccc-cccccccccccccccccccccchHHHHHHhhhcccCCChHHHHH
Confidence 99999999999999999999999999999887765 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 187 ~a~~~a~~ia~~~~~a~~~~K 207 (230)
T d2a7ka1 187 AAITQAHVMASYPASAFINTK 207 (230)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-46 Score=292.45 Aligned_cols=179 Identities=26% Similarity=0.352 Sum_probs=169.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC--ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++... +++....+....++++..+.++||||||+|||+|+
T Consensus 37 m~~el~~~~~~~~~d~~vr~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~ 115 (263)
T d1wz8a1 37 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAV 115 (263)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecc-cccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeecccccc
Confidence 68899999999999999999999998 7999999999988653 34455666778889999999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|||++++++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.
T Consensus 116 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~ 195 (263)
T d1wz8a1 116 GAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVY 195 (263)
T ss_dssp THHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccchhHHHhcCCcccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++++++++||.+++.+|
T Consensus 196 ~~a~~~a~~la~~~~~al~~~K 217 (263)
T d1wz8a1 196 EKALEVAERLAQGPKEALHHTK 217 (263)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHH
Confidence 9999999999999999999886
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=2.8e-46 Score=288.26 Aligned_cols=180 Identities=28% Similarity=0.354 Sum_probs=171.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.+++|+++++|||+|.++++||+|.|++++..........+...+++++.++.++||||||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~Gg 110 (249)
T d1sg4a1 31 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAG 110 (249)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHH
T ss_pred HHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhccccccc
Confidence 57899999999999999999999998667899999999998777777788888999999999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEE--eCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 81 GLEMALACDLRICGEAALL--GLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~--~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|++|+++||+||++++++| ++||+++|+.|++++++++++++|+.++++++++|+++++++|+++||||+++|++++.
T Consensus 111 G~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~ 190 (249)
T d1sg4a1 111 GCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 190 (249)
T ss_dssp HHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHH
T ss_pred ccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccHHHHHhhccccccCChHHHH
Confidence 9999999999999999875 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 191 ~~a~~~a~~l~~~~~~a~~~~K 212 (249)
T d1sg4a1 191 STALSAIAQWMAIPDHARQLTK 212 (249)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998876
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-45 Score=281.39 Aligned_cols=178 Identities=20% Similarity=0.326 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH----HHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+.+ +||++|. +++||+|.|++++....... .......+++++.++.++|||+||+|||+
T Consensus 31 ~~~~l~~~l~~~~~d~~v-~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~ 108 (245)
T d2f6qa1 31 MYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGP 108 (245)
T ss_dssp HHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhcCCce-EEeecCC-CccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEEEECCc
Confidence 578999999999999887 8899997 89999999999987654332 33344556788899999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++++++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 109 a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (245)
T d2f6qa1 109 AVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188 (245)
T ss_dssp EETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTT
T ss_pred cccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhhhhcccccccccccccccccccccCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.+++++++++||.+++.+|
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K 212 (245)
T d2f6qa1 189 FQKEVWTRLKAFAKLPPNALRISK 212 (245)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999876
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-45 Score=284.03 Aligned_cols=178 Identities=21% Similarity=0.376 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.| ++++|||||. |++||+|.|++++.... ......+.+.+++++..+.++||||||+|||+
T Consensus 31 ~~~el~~al~~~~~d-~~~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~ 108 (258)
T d2fw2a1 31 VIKEMVNALNSAAAD-DSKLVLFSAA-GSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 108 (258)
T ss_dssp HHHHHHHHHHHHHHS-SCSEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEecC-ccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeeeecccc
Confidence 688999999999987 5699999998 79999999999886532 22344567778899999999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++++++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 109 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (258)
T d2fw2a1 109 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 188 (258)
T ss_dssp EETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECSTT
T ss_pred cccccccccccccccceecccceeeccccccccccccccccchhhcCccccchhhccCcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.+++++++++||.+++.+|
T Consensus 189 l~~~a~~~a~~i~~~~~~a~~~~K 212 (258)
T d2fw2a1 189 FTQEVMIQIKELASYNAIVLEECK 212 (258)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccchhhhhhhhhhHHHHHHHH
Confidence 999999999999999999998876
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-45 Score=284.14 Aligned_cols=180 Identities=47% Similarity=0.801 Sum_probs=169.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++.+..........+.+.+++++..+.++||||||+|||+|+||
T Consensus 34 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~Gg 113 (266)
T d1hzda_ 34 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG 113 (266)
T ss_dssp HHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETH
T ss_pred HHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccccccccc
Confidence 67899999999999999999999999778999999999998877777777888899999999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch----
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ---- 156 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~---- 156 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 114 G~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (266)
T d1hzda_ 114 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDA 193 (266)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCH
T ss_pred cceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhcccccccccChhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+.+.+++++++++||.+++.+|
T Consensus 194 ~~~~a~~~a~~i~~~~p~a~~~~K 217 (266)
T d1hzda_ 194 AYRKALDLAREFLPQGPVAMRVAK 217 (266)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcccCChHHHHHHH
Confidence 456677777899999999998876
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.9e-45 Score=284.91 Aligned_cols=177 Identities=36% Similarity=0.621 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++|+.+++|+++++|||||. +++||+|.|++++....... .+...+.+++..+.++||||||+|||+|+|+
T Consensus 35 ~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~kPvIaav~G~a~Gg 111 (260)
T d1mj3a_ 35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQD--CYSGKFLSHWDHITRIKKPVIAAVNGYALGG 111 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCHHH--HHHC--CCGGGGGGGCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCcceEEEecc-cccccccchhhhhhccchhh--hhHHHHHHHHHHhccCCCeEEEEEcCeEeHH
Confidence 68899999999999999999999998 89999999999886543332 2345567778899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++|||+++++++++.++
T Consensus 112 G~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~ 191 (260)
T d1mj3a_ 112 GCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEE 191 (260)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHH
T ss_pred HHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 192 a~~~a~~i~~~~~~a~~~~K 211 (260)
T d1mj3a_ 192 AIQCAEKIANNSKIIVAMAK 211 (260)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred cccccccccchhhHHHHHHH
Confidence 99999999999999999876
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=3.3e-44 Score=279.51 Aligned_cols=179 Identities=25% Similarity=0.360 Sum_probs=165.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-----hHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----SEIHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.+++|+++++|||||. ++.||+|.|++++..... +........++.++.++.++|||+||+|||
T Consensus 31 ~~~el~~~l~~~~~d~~i~~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G 109 (269)
T d1nzya_ 31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAING 109 (269)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCC-cccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchhehhhhh
Confidence 68899999999999999999999998 799999999999865432 123334455678899999999999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+|+|||++|+++||+||++++++|++||.++|+.|+++.++++++++|..++++++++|++++|+||+++||||+++|++
T Consensus 110 ~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~ 189 (269)
T d1nzya_ 110 VAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189 (269)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHH
T ss_pred hcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.++++++++.||.+++++|
T Consensus 190 ~l~~~a~~~a~~la~~~~~a~~~~K 214 (269)
T d1nzya_ 190 EFREVAWKVARELAAAPTHLQVMAK 214 (269)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999876
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=5.7e-44 Score=275.30 Aligned_cols=178 Identities=21% Similarity=0.347 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.+++|+++++|||||. +++||+|.|++++...+.+....+...++.++..+.++|||||+++||+|.|
T Consensus 41 ~~~el~~al~~~~~d~~v~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G- 118 (249)
T d1szoa_ 41 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN- 118 (249)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-
T ss_pred HHHHHHHHHHHHHhCCCcceEeeecc-cccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeecccccc-
Confidence 57899999999999999999999998 7999999999999877777788888888999999999999999999998865
Q ss_pred hHHHHhhCCEEEEcCCeEEe-CccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 81 GLEMALACDLRICGEAALLG-LPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~-~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
|++++++||+||++++++|. +||.++|++|+.++++++++++|..++++++++|++++++||+++||||+|+|++++.+
T Consensus 119 G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 198 (249)
T d1szoa_ 119 APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLP 198 (249)
T ss_dssp STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHH
T ss_pred ccccccccccccccCCcEEEEeeccccccccccccccccccccCccceeeecccCCCCCHHHHHHhCCcCcccCHHHHHH
Confidence 67899999999999999985 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++++++++||.+++.+|
T Consensus 199 ~a~~~a~~la~~~~~a~~~~K 219 (249)
T d1szoa_ 199 RAWELARGIAEKPLLARRYAR 219 (249)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.1e-43 Score=281.54 Aligned_cols=173 Identities=37% Similarity=0.547 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC---hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.... ..........+++++..+.++||||||+|||+|
T Consensus 36 ~~~el~~al~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 114 (310)
T d1wdka4 36 TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIA 114 (310)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceeeccccc
Confidence 57899999999999999999999998 78999999999986432 223334445677899999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++|++++
T Consensus 115 ~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l 194 (310)
T d1wdka4 115 LGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194 (310)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGH
T ss_pred cccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEEccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHH
Q 030277 158 QLKALEIAQEINQKVQS 174 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~ 174 (180)
.+++.++++++++.++.
T Consensus 195 ~~~a~~~a~~~~~~~~~ 211 (310)
T d1wdka4 195 GAAALDLIKRAISGELD 211 (310)
T ss_dssp HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999887654
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-44 Score=279.23 Aligned_cols=178 Identities=23% Similarity=0.437 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeC-CCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++|+.++ ++++++|||+|. ++++||+|.|++++.....+. ..+.+.++.++..+.++||||||+|||+|+|
T Consensus 32 ~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G 109 (261)
T d1ef8a_ 32 FIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP-LSYDDPLRQITRMIQKFPKPIISMVEGSVWG 109 (261)
T ss_dssp HHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CT-TCTTSHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCccc-cccccchhhhHHHHHhCchhhhhcccccccc
Confidence 6789999999998 457899999985 568999999999986643222 1233456788999999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||.++|++|+.++++++++.+|..++++++++|++++++||+++||||+++|++++.+
T Consensus 110 gG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~ 189 (261)
T d1ef8a_ 110 GAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELED 189 (261)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHH
T ss_pred hhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccccccccccCceEcHHHHHHcCCcceeeechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 190 ~a~~~a~~la~~~~~a~~~~K 210 (261)
T d1ef8a_ 190 FTLQMAHHISEKAPLAIAVIK 210 (261)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred hhHHHHHHHHhcCcHHHHHHH
Confidence 999999999999999998876
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.8e-43 Score=271.67 Aligned_cols=178 Identities=33% Similarity=0.491 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||||. ++.||+|.|++++... .......+...++.++..+.++||||||+|||+|
T Consensus 27 ~~~el~~~l~~~~~d~~v~~vvl~g~-g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a 105 (253)
T d1uiya_ 27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA 105 (253)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecc-cccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEEeCeEE
Confidence 67899999999999999999999998 7999999999877543 3344555666778889999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|||++|+++||+||++++++|++||.++|++|. ++++++++++|..++++++++|++++++||+++||||+|+|++++
T Consensus 106 ~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~ 184 (253)
T d1uiya_ 106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKA 184 (253)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCH
T ss_pred ehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCccccccccc
Confidence 9999999999999999999999999999998875 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 185 ~~~a~~~a~~~~~~~~~a~~~~K 207 (253)
T d1uiya_ 185 LEEAKALAEEVAKNAPTSLRLTK 207 (253)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred chhHHHHHHhhcccchHHHHHHH
Confidence 99999999999999999998876
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.7e-43 Score=273.07 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-----------hHHHHHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+.+|.++++++++|+++++|||||. |++||+|.|++++..... .....+...++.++..+.++||||
T Consensus 33 ~~~el~~al~~~~~d~~v~~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~ 111 (266)
T d1pjha_ 33 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL 111 (266)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecc-ccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHhcchhh
Confidence 57899999999999999999999999 799999999998865321 123445667778899999999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|+++++++++|..++++++++|++++++||+++|||
T Consensus 112 IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv 191 (266)
T d1pjha_ 112 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFI 191 (266)
T ss_dssp EEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCC
T ss_pred hhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccccccccchhhhhhccCCcCCHHHHHHCCCE
Confidence 999999999999999999999999754 7899999999999999999999999999999999999999999999999999
Q ss_pred ceecCCchHHHH------HHHHHHHHhccCHHHHHhhC
Q 030277 149 NYYVPAGQAQLK------ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 149 ~~v~~~~~~~~~------a~~~a~~~~~~~~~a~~~~K 180 (180)
|+++++++...+ +.++++.+...++.++..+|
T Consensus 192 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K 229 (266)
T d1pjha_ 192 SKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMK 229 (266)
T ss_dssp SEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eEeeCchhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999986443322 44667777778988887665
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.9e-42 Score=269.03 Aligned_cols=179 Identities=29% Similarity=0.534 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-------h----HHHHHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-------S----EIHFYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+++|.++|+.+++|+++++|||||. ++.||+|.|+.++..... . ........++.++..+.++||||
T Consensus 32 m~~el~~~l~~~~~d~~v~~vvltg~-~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 110 (275)
T d1dcia_ 32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV 110 (275)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecc-ccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHhcCCCE
Confidence 68899999999999999999999998 899999999988754211 1 12334556678888999999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCH-HHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK-SVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~-~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
||+|||+|+|||++|+++||+||++++++|++||+++|+.|++++++++++++|. ..+++++++|++++++||+++|||
T Consensus 111 Iaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv 190 (275)
T d1dcia_ 111 IAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190 (275)
T ss_dssp EEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSS
T ss_pred EEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccccccccccccccccccccccchhhhccCCCc
Confidence 9999999999999999999999999999999999999999999999999999985 455799999999999999999999
Q ss_pred ceecCCch-HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 149 NYYVPAGQ-AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 149 ~~v~~~~~-~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|+|+|+++ +.+++.++++++++++|.+++.+|
T Consensus 191 ~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K 223 (275)
T d1dcia_ 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSK 223 (275)
T ss_dssp SEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred eeeeehhhhhhhcccccccccccccHHHHHHHH
Confidence 99999765 667889999999999999999876
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.3e-41 Score=268.11 Aligned_cols=180 Identities=23% Similarity=0.369 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeC------CCCceEecCCccccccCChh-----------HHHHHHHHHHHHHHHHh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSS------VPKVFCAGADLKERRQMSPS-----------EIHFYVNTLRSTFSFLE 63 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~------~~~~F~~G~D~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 63 (180)
|+++|.+++++++.|+++++|||||. +++.||+|.|++........ ........+..++..+.
T Consensus 48 m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 127 (297)
T d1q52a_ 48 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIR 127 (297)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999997 35678888988765432111 11222334567888899
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
+++|||||+|||+|+|||++++++||+||++++ ++|++||+++|++|+++++++|++++|..++++++++|++++++||
T Consensus 128 ~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA 207 (297)
T d1q52a_ 128 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQM 207 (297)
T ss_dssp HSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHH
T ss_pred hcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccccccccccccccccCccceeeccccccccchHhh
Confidence 999999999999999999999999999999876 5799999999999999999999999999999999999999999999
Q ss_pred HhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 143 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 143 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++||||+++|++++.+++.++++++++.||.+++.+|
T Consensus 208 ~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~~~K 245 (297)
T d1q52a_ 208 HQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLK 245 (297)
T ss_dssp HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hhhccccccCchHHhhHHHHHHhhhhccCCHHHHHHHH
Confidence 99999999999999999999999999999999999876
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.76 E-value=3.1e-08 Score=70.80 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=69.9
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcchh---------------hhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~ 119 (180)
.++..+..++.|+...+.|.|.+.|..+.+++| .|++.++++|-+.+...|+.....-. ..+.
T Consensus 62 ~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a 141 (179)
T d2cbya1 62 AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNA 141 (179)
T ss_dssp HHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778999999999999999999999999 79999999999988865553221100 1111
Q ss_pred hh--cCHHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 120 RL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 120 ~~--~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+. .......+.+-.-..++|+||+++||||+|+..
T Consensus 142 ~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 142 EFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp HHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred HHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence 22 124444555667788999999999999999864
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.5e-08 Score=72.76 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcchh---------------hhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l 118 (180)
..++..+..++.|+...+.|.|.+.|..+.+++| .|++.+++.|-+.+...|......-. ..+
T Consensus 64 ~~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~ 143 (183)
T d1yg6a1 64 MSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELM 143 (183)
T ss_dssp HHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999999998 79999999999988866543211100 011
Q ss_pred hhh--cCHHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 119 PRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 119 ~~~--~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
.+. .......+++-.-..++|+||+++||||+|++.
T Consensus 144 ~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 144 ALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp HHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred HHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence 111 123344444444457899999999999999864
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.60 E-value=2.1e-07 Score=67.06 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhh--CCEEEEcCCeEEeCccccccccCCcchh-----------------h
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALA--CDLRICGEAALLGLPETGLAIIPGAGGT-----------------Q 116 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~--~D~~i~~~~~~~~~~e~~~G~~p~~~~~-----------------~ 116 (180)
..++..+..++.|+...+.|.|.+.|..+.++ +|.|++.+++.+-+.+...|........ .
T Consensus 72 lai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~ 151 (192)
T d1y7oa1 72 LAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEK 151 (192)
T ss_dssp HHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 35667777789999999999999999888776 5799999999999999877664321111 0
Q ss_pred hhhhh--cCHHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 117 RLPRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 117 ~l~~~--~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
.+.+. .......+.+-.-..++|+||+++||||+|+..
T Consensus 152 i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 152 ILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred HHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence 01111 224445566666778999999999999999854
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.55 E-value=2.9e-07 Score=66.33 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcchh---------------hhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l 118 (180)
..++..+..++.|+...+.|.|.+.|..+.+++| .|++.+++.|-+.+...|......-. ..+
T Consensus 74 ~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~ 153 (193)
T d1tg6a1 74 LAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIY 153 (193)
T ss_dssp HHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788999999999999999999999999 59999999999999876653221100 011
Q ss_pred hhh--cCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 119 PRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 119 ~~~--~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
.+. .......+.+-.-..++|+||+++||||+|+.
T Consensus 154 a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~ 190 (193)
T d1tg6a1 154 AKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV 190 (193)
T ss_dssp HHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECS
T ss_pred HHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEcc
Confidence 111 12334444454455799999999999999985
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.53 E-value=1e-06 Score=63.17 Aligned_cols=99 Identities=5% Similarity=-0.037 Sum_probs=71.2
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcchh---------------hhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l 118 (180)
..++..+..++.|+...+.|.|.+.|..+.+++| .|++.++++|-+++...|......-. ..+
T Consensus 65 ~ai~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~ 144 (190)
T d2f6ia1 65 LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYL 144 (190)
T ss_dssp HHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778999999999999999999999988 59999999999999877653211100 012
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 119 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 119 ~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
.+..| .....+.+-.-..++|+||+++||||+|++.
T Consensus 145 a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 145 SSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp HHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred HHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence 22222 2233444445567999999999999999964
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=98.21 E-value=3e-05 Score=57.78 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=57.6
Q ss_pred CCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH---
Q 030277 66 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA--- 142 (180)
Q Consensus 66 ~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea--- 142 (180)
..|+|+++.|+|.|++......||++++.+++.+++.-. .+.+ . .+|+.++.+|.
T Consensus 161 ~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP------------~vVe--------~--~~ge~~~~eelGga 218 (253)
T d1on3a1 161 VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP------------QVIK--------S--VTGEDVTADELGGA 218 (253)
T ss_dssp TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH------------HHHH--------H--HHCCCCCHHHHHSH
T ss_pred cceEEEEEecCcccceeeccchhhheeccccceEEecCc------------chhh--------h--hhCCcCChHhccCH
Confidence 589999999999999999999999999998877764322 1111 1 24566665433
Q ss_pred ----HhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 143 ----MSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 143 ----~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
.+-|.||.+++++ +++.+.++++-++
T Consensus 219 ~~h~~~sG~iD~v~~~e---~~a~~~~r~lls~ 248 (253)
T d1on3a1 219 EAHMAISGNIHFVAEDD---DAAELIAKKLLSF 248 (253)
T ss_dssp HHHHHTTCCCSEEESSH---HHHHHHHHHHHHT
T ss_pred HHhhhccccceEEECCH---HHHHHHHHHHHHh
Confidence 4579999999876 4455666555443
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=1.9e-06 Score=66.25 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHH
Q 030277 50 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKD 129 (180)
Q Consensus 50 ~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~ 129 (180)
...+.+...+..+...++|+|+.|-|.+.|||+.-...+|.++|-++++++. +.|.+.++..+...--...+.+
T Consensus 173 g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAe 246 (316)
T d2f9ya1 173 GQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAE 246 (316)
T ss_dssp THHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHH
Confidence 3455667788888999999999999999999998888999999999999983 2466655555543322222222
Q ss_pred HHhcCCCCCHHHHHhcCccceecC
Q 030277 130 IIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 130 l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
..++++++++++|+||+++|
T Consensus 247 ----alklta~dL~~lgiIDeII~ 266 (316)
T d2f9ya1 247 ----AMGIIRPRLKELKLIDSIIP 266 (316)
T ss_dssp ----HHTCSHHHHHTTTSCSCCCC
T ss_pred ----HHhhhhHHHHHcCchhhccc
Confidence 23589999999999999995
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=3.7e-05 Score=57.59 Aligned_cols=96 Identities=20% Similarity=0.307 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCcEEEEECCccchhhH-HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHh
Q 030277 54 TLRSTFSFLEALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIF 132 (180)
Q Consensus 54 ~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~-~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l 132 (180)
........+.....|+|+++.|+|.||+. .+++.+|++++.+.+.+++...+ .... .
T Consensus 157 ~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP~--------------------vve~--~ 214 (263)
T d2f9yb1 157 KTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPR--------------------VIEQ--T 214 (263)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH--------------------HHHH--H
T ss_pred hHHHHHHHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCHH--------------------HHhh--h
Confidence 33444455566889999999999999876 57888888888888877653331 1110 1
Q ss_pred cCCCC-----CHHHHHhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 133 TGRKV-----SGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 133 ~g~~~-----~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
+|+++ +++-..+.|+||.++++++..++..++.+-+...
T Consensus 215 ~ge~~~e~~g~a~~~~~~G~iD~vv~~ee~~~~l~~~l~~L~~~ 258 (263)
T d2f9yb1 215 VREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNL 258 (263)
T ss_dssp HTSCCCTTTTBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTC
T ss_pred cCCcCChhhccHHHHHhCCCCCEEECCHHHHHHHHHHHHHHhhC
Confidence 23333 3444456899999998776655555555555433
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=0.00016 Score=53.80 Aligned_cols=83 Identities=25% Similarity=0.285 Sum_probs=56.9
Q ss_pred hcCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHH
Q 030277 63 EALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 141 (180)
Q Consensus 63 ~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~e 141 (180)
..-..|+|+++.|+|.|++......||++|+.++ +.+++. |+...+. .+|+.++.+|
T Consensus 158 ~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a--------------------GP~vV~~--~~ge~~~~ee 215 (258)
T d2a7sa1 158 ASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEE 215 (258)
T ss_dssp HTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS--------------------CHHHHHH--HHCCCCCHHH
T ss_pred HcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEcc--------------------ChhHHHH--hcCCccChhh
Confidence 3457999999999999999999999999998654 544322 1222221 3677787775
Q ss_pred H-------HhcCccceecCCc-hHHHHHHHHHHH
Q 030277 142 A-------MSLGLVNYYVPAG-QAQLKALEIAQE 167 (180)
Q Consensus 142 a-------~~~Glv~~v~~~~-~~~~~a~~~a~~ 167 (180)
. .+.|.+|.+++++ +..+.++++..-
T Consensus 216 LGga~~h~~~sG~~D~v~~de~~a~~~~r~~Ls~ 249 (258)
T d2a7sa1 216 LGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSY 249 (258)
T ss_dssp HHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHH
T ss_pred ccCHhHhhhhccccceEeCCHHHHHHHHHHHHHh
Confidence 4 4579999999864 444445544443
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=0.00025 Score=52.53 Aligned_cols=83 Identities=23% Similarity=0.343 Sum_probs=58.0
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
.-..|+|+++.|+|.|++......||++|+.++ +.+.+. |+..... .+|+.++.+|.
T Consensus 156 s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a--------------------Gp~vv~~--~~ge~~~~eel 213 (251)
T d1vrga1 156 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIKA--VTGEEISQEDL 213 (251)
T ss_dssp TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH--HHCCCCCHHHH
T ss_pred CCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec--------------------Cchhhhh--hcCCcCChHHc
Confidence 457999999999999999999999999998755 433221 1111111 46788888775
Q ss_pred -------HhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 143 -------MSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 143 -------~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
.+-|.+|.+++++ +++.+.++++-++
T Consensus 214 Gga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs~ 246 (251)
T d1vrga1 214 GGAMVHNQKSGNAHFLADND---EKAMSLVRTLLSY 246 (251)
T ss_dssp HBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHTT
T ss_pred cchhhhhhccccceEEECCH---HHHHHHHHHHHHh
Confidence 4569999999875 4455555555443
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.87 E-value=0.00026 Score=52.64 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=55.4
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEcC-CeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~-~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
.-..|+|+++.|+|.||+......||++++.+ .+.+++... .+.+ ..+|+.++.+|+
T Consensus 158 s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP------------~vv~----------~~~ge~i~~eel 215 (258)
T d1xnya1 158 SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP------------DVIK----------TVTGEDVGFEEL 215 (258)
T ss_dssp TTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH------------HHHH----------HHHCCCCCHHHH
T ss_pred cCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH------------HHHH----------HHhcCccChHHh
Confidence 34689999999999999999888899888775 455543222 1111 146777887775
Q ss_pred -------HhcCccceecCCc-hHHHHHHHHHH
Q 030277 143 -------MSLGLVNYYVPAG-QAQLKALEIAQ 166 (180)
Q Consensus 143 -------~~~Glv~~v~~~~-~~~~~a~~~a~ 166 (180)
..-|++|.+++++ +..+.++++..
T Consensus 216 gga~~h~~~sG~~d~v~~de~ea~~~~r~~Ls 247 (258)
T d1xnya1 216 GGARTHNSTSGVAHHMAGDEKDAVEYVKQLLS 247 (258)
T ss_dssp HBHHHHHHTSSCCSEEESSHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeEEEeCCHHHHHHHHHHHHH
Confidence 4569999999764 44444444443
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.77 E-value=3.7e-05 Score=58.29 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=62.6
Q ss_pred HHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCcccc--ccccCCcchhhhhhhhcCHHHHHHHHhcCCCC
Q 030277 60 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETG--LAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV 137 (180)
Q Consensus 60 ~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~--~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~ 137 (180)
..+....+|+|++|.|.|.|||...+++||++++.+++.+.+.... -+..+...........+...... -.+-+.+
T Consensus 174 a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge--~~~~eeL 251 (287)
T d1pixa2 174 AELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDR--TGKTEPP 251 (287)
T ss_dssp HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHT--TCCCCCS
T ss_pred HHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhcc--ccccccc
Confidence 3456678999999999999999888888888888888887664332 22222222111111111100000 0123444
Q ss_pred CHHHH--HhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 138 SGKDA--MSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 138 ~a~ea--~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
-+.+. ..-|.+|.+++++ +++.+.++++.++
T Consensus 252 GGa~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls~ 284 (287)
T d1pixa2 252 GAVDIHYTETGFMREVYASE---EGVLEGIKKYVGM 284 (287)
T ss_dssp SBHHHHTTTSCCSCEEESSH---HHHHHHHHHHHHT
T ss_pred ccHHHhhhhcccceeecCCH---HHHHHHHHHHHhh
Confidence 44443 3569999999775 4555666665443
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.44 E-value=0.0003 Score=52.48 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhhc--
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV-- 122 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~-- 122 (180)
....+....++..+..+.+|.|+.+-|.++|+|..-.. .+|++++.+++.++.-.. .+.....+.+.+
T Consensus 123 ~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~p------e~aa~v~~~~~l~~ 196 (264)
T d1vrga2 123 GGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGP------EGAANIIFKREIEA 196 (264)
T ss_dssp TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCH------HHHHHHHTHHHHHH
T ss_pred HhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecCH------HHhhhhhhhhhhhh
Confidence 34566777889999999999999999999998763332 589999888888775333 111111111111
Q ss_pred -C--HHHHHHHH--hcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHH
Q 030277 123 -G--KSVAKDII--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 168 (180)
Q Consensus 123 -g--~~~a~~l~--l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~ 168 (180)
. .....++. ..-+.-++..+.+.|++|.|+++.+.........+.+
T Consensus 197 ~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l 247 (264)
T d1vrga2 197 SSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVC 247 (264)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred hhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence 0 00111110 1111236788899999999999998877766655544
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.0014 Score=48.87 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHH
Q 030277 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 85 (180)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~ 85 (180)
.+.++.+++. ++-+|.|.-. ..|..|. ..+.....+....++..+..+..|.|+.+-|.++|+|..-.
T Consensus 95 ~rfi~lc~~~-~iPlv~l~dt--pGf~~G~---------~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am 162 (271)
T d2a7sa2 95 ARFVRTCDCF-NIPIVMLVDV--PGFLPGT---------DQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVM 162 (271)
T ss_dssp HHHHHHHHHT-TCCEEEEEEE--CCBCCCH---------HHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHT
T ss_pred HHHHHHHHHh-CCceEEeech--hhhhhhc---------cHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhh
Confidence 3445555444 4556666443 2355443 22333356677888999999999999999999999874432
Q ss_pred ----hhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC-------------HHHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 86 ----LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-------------KSVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 86 ----~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g-------------~~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
+.+|++++.+++.++.-.. .+.....+.+.+. .....+. .-+.-++..+.+.|++
T Consensus 163 ~~~~~~~d~~~AwP~A~igvMgp------egaa~v~~~~~l~~~~~~~~~~~~~~~~~~~e~--~e~~~~p~~aa~~g~i 234 (271)
T d2a7sa2 163 GSKDMGCDVNLAWPTAQIAVMGA------SGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEY--EDTLVNPYVAAERGYV 234 (271)
T ss_dssp TCGGGTCSEEEECTTCEEESSCH------HHHHHHHTTTTTTGGGTSSCCTTSSTTHHHHHH--HTTTSBSHHHHHHTSS
T ss_pred cccccccceEEEecceeEeecCH------HHHHHHHHHHhhhhhhhcccchHHHHHHHHHHH--HHHhcCHHHHHHcCCC
Confidence 3479999998888876332 1111111111111 0111111 1223467788899999
Q ss_pred ceecCCchHHHHHHHHHHH
Q 030277 149 NYYVPAGQAQLKALEIAQE 167 (180)
Q Consensus 149 ~~v~~~~~~~~~a~~~a~~ 167 (180)
|.|+++.+..+......+-
T Consensus 235 D~VIdP~dTR~~L~~~L~~ 253 (271)
T d2a7sa2 235 DAVIPPSHTRGYIGTALRL 253 (271)
T ss_dssp SEECCGGGHHHHHHHHHHH
T ss_pred CeeECHHHHHHHHHHHHHH
Confidence 9999998876665444443
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.26 E-value=0.00044 Score=51.52 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHh----hCCEEEEcCCeEEeCccccccccCCcchhhhh-hhhcC
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRL-PRLVG 123 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l-~~~~g 123 (180)
....+...+++..+.+..+|.|+.+-|.++|+|..-.. ..|++++.+++.++. .++-++...+ .+.+.
T Consensus 123 ~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~v-------Mg~Egaa~v~~~~el~ 195 (264)
T d1on3a2 123 GGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV-------MGAEGAANVIFRKEIK 195 (264)
T ss_dssp TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhh-------ccHHHHHHHHHhhhhh
Confidence 33566778889999999999999999999998754333 467788777776664 3222222222 21110
Q ss_pred ---HHHH--HHHHh--cCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHh
Q 030277 124 ---KSVA--KDIIF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169 (180)
Q Consensus 124 ---~~~a--~~l~l--~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~ 169 (180)
.... .+.+. .-+.-++..+.+.|+||.|+++.+.........+.+.
T Consensus 196 a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~ 248 (264)
T d1on3a2 196 AADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYA 248 (264)
T ss_dssp HSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGG
T ss_pred hhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHh
Confidence 0000 11110 1112357788899999999999887776665555544
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.13 E-value=0.00053 Score=51.05 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC-
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG- 123 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g- 123 (180)
....+....++..+.++..|.|+.+-|.++|+|..... ..|++++.+++.++.-... +.....+.+...
T Consensus 121 ~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~pe------~aa~il~~~~~~~ 194 (263)
T d1xnya2 121 DGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQ------GAVNILHRRTIAD 194 (263)
T ss_dssp TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHH------HHHHHHTHHHHHS
T ss_pred HhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccCHH------HHHHHHHHHHHhh
Confidence 33566777889999999999999999999998764432 4689999988888754332 211111111110
Q ss_pred ---------HHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHh
Q 030277 124 ---------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 169 (180)
Q Consensus 124 ---------~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~ 169 (180)
.....+.. -...++..+...|++|.|+++.+.........+.+.
T Consensus 195 a~~~~~~~~~~~~~~~~--~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l~ 247 (263)
T d1xnya2 195 AGDDAEATRARLIQEYE--DALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR 247 (263)
T ss_dssp CCTTCSSSHHHHHHHHH--HHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred hccchHHHHHHHHHHHH--HHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHHh
Confidence 00111111 011346778889999999999988877666555553
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.04 E-value=0.00099 Score=50.99 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCC--CH---
Q 030277 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV--SG--- 139 (180)
Q Consensus 65 ~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~--~a--- 139 (180)
-..|+|+++.|.|.|+|.-++..||++|+.+++.+.+... ..+.+ .+|+.+ +.
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltGp-----------~~l~~-----------~lG~eVy~s~~eL 296 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGA-----------PAINK-----------MLGREVYTSNLQL 296 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSCH-----------HHHHH-----------HSSSCCCSCTHHH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeCH-----------HHHHH-----------hcCccccCChhHh
Confidence 4689999999999999999999999999998876653221 11111 134433 32
Q ss_pred ---HHHHhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 140 ---KDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 140 ---~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
+-..+-|.+|.+++++ .++.+.++++-++
T Consensus 297 GG~~i~~~nGv~h~~a~dd---~eai~~i~~~LSy 328 (333)
T d1uyra1 297 GGTQIMYNNGVSHLTAVDD---LAGVEKIVEWMSY 328 (333)
T ss_dssp HSHHHHHHHTSSSEEESSH---HHHHHHHHHHHTT
T ss_pred CCHhHHhhCCCceEEeCCH---HHHHHHHHHHHhh
Confidence 2234689999999775 5566666666554
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.01 E-value=0.0023 Score=48.32 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhh----CCEE--EEcCCeEEeCccccccccCCcchhhh-hhhhcC
Q 030277 51 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDLR--ICGEAALLGLPETGLAIIPGAGGTQR-LPRLVG 123 (180)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~----~D~~--i~~~~~~~~~~e~~~G~~p~~~~~~~-l~~~~g 123 (180)
..+....++..+..+.+|.|+.+-|.++|+|..-... .|.+ ++.+.+. +|..++.++... +.+.+.
T Consensus 141 ~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~~~~~~~~~~awP~ae-------igvMg~E~aa~vl~~~el~ 213 (299)
T d1pixa3 141 LLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATE-------IAVMNGETAATAMYSRRLA 213 (299)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTTCTTTEEEEEECTTCE-------EESSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcceeEEEEecccccccccccccCccCcccceecCCCccc-------cccccchhhheeehhhhhh
Confidence 4566678888999999999999999999988543332 3433 3344444 455433332322 222221
Q ss_pred HH------------HHHHHHhc-CCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 124 KS------------VAKDIIFT-GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 124 ~~------------~a~~l~l~-g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
.. .-+++... -+..++..+.+.|+||.|+++.+.........+.+.++
T Consensus 214 ~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~ 274 (299)
T d1pixa3 214 KDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQN 274 (299)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTS
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhC
Confidence 10 11111110 12347788899999999999998877776666655443
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.12 E-value=0.31 Score=37.64 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=48.9
Q ss_pred HHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEE--CCccchhhHHH
Q 030277 7 HAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI--DGAALGGGLEM 84 (180)
Q Consensus 7 ~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v--~G~~~g~G~~l 84 (180)
+++..+.+..++-+|+|.-. ..|+.|.+- +.....+....++..+.++..|+|..| .|...||++..
T Consensus 120 ~~i~d~cd~~~lPLi~l~D~--pGF~~G~~~---------E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~GGa~vv 188 (404)
T d1uyra2 120 QAINDFNNGEQLPMMILANW--RGFSGGQRD---------MFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVV 188 (404)
T ss_dssp HHHHHHHTTSCCCEEECCCC--CCBCC---------------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHT
T ss_pred HHHHHhhhccccceEEeecC--CcccCcHHH---------HHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccchhhhhc
Confidence 44444444446666766544 558877532 222345566778889999999999999 67777765544
Q ss_pred Hhh----CCE-EEEcCCeEEeC
Q 030277 85 ALA----CDL-RICGEAALLGL 101 (180)
Q Consensus 85 ~~~----~D~-~i~~~~~~~~~ 101 (180)
+-. .++ +++.+++.++.
T Consensus 189 ~~~~~~~~~~~~yAwP~a~~gV 210 (404)
T d1uyra2 189 VDPTINADQMEMYADVNARAGV 210 (404)
T ss_dssp TCGGGGTTTEEEEEETTCEEES
T ss_pred ccCccCCccceEEECCcccccc
Confidence 321 122 45666666554
|
| >d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.08 E-value=1.5 Score=29.09 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
..+.|+.+.+||++++|++-..+.+ | ++ .+.+..++.. ..||+|+..-|..-
T Consensus 61 ~~d~l~~l~~D~~t~~i~l~~E~~~------~--------~~-------~f~~~~r~~~-~~Kpvv~~k~G~s~ 112 (161)
T d2csua2 61 FAELMEYLADTEEDKAIALYIEGVR------N--------GK-------KFMEVAKRVT-KKKPIIALKAGKSE 112 (161)
T ss_dssp HHHHHHHHTTCSSCCEEEEEESCCS------C--------HH-------HHHHHHHHHH-HHSCEEEEECC---
T ss_pred HHHHHHHHhcCCCCcEEEEEecCCc------C--------HH-------HHHHHHHHHh-ccCCeeEEEeeccc
Confidence 5688999999999999999887321 1 11 2233444443 35999998877764
|