Citrus Sinensis ID: 030318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MLMTSSISSSSLRTSPSSLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFLSAKVAAFINWRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccEEEEEEEcccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccccccccccccEEEEEEccccccccccccccHccccccHHHEEEEccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEEEEEEEHHHHHccc
Coil and Loop (DISEMBL)
mlmtssisssslrtspssllpclnqttfsysnstisshfistpttrkrlaplsklrisssennrtavdvasplpttsnvdgddgggAVVVRRFYAGINGRDLASVEELIAddcvyedlifprpflgrkaTLDFFKKFSDSISSDLQFVIDdisaedssangkesHFLSAKVAAFINWRL
Flexible Loop (DISEMBL)
mlmtssisssslrtspssllPCLNQTTFSYSNSTisshfistpttrkrLAPLSKlrisssennrtavdvasplpttsnvdgddgggAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSsangkeshflsakvaafinwrl
Low Complexity Region (SEG)
mlmtssisssslrtspssllpCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNvdgddgggavvvRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLdffkkfsdsissdLQFVIDDISAEDSSANGKESHFLSAKVAAFINWRL
Disordered region (IsUnstruct)
*********************CL**TTF********************************************************GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI*************FLSAKVAAFINW**
Disordered Region (DISOPRED)
*******************LPC*****************************************************************VVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFLSAKVAAFINWRL
Disordered Region (DISEMBL)
*****************SLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISA**********HFLSAKVAAFINWRL
Disordered Region (DISPRO)
***********LRTSPSSLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASP***********GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFLSAKVAAFINWRL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLMTSSISSSSLRTSPSSLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFLSAKVAAFINWRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
225460141	226	PREDICTED: uncharacterized protein LOC10	0.849	0.672	0.494	2e-30
147794044	203	hypothetical protein VITISV_035107 [Viti	0.849	0.748	0.488	2e-30
255574237	218	protein transporter, putative [Ricinus c	0.659	0.541	0.552	3e-28
449450034	218	PREDICTED: uncharacterized protein LOC10	0.709	0.582	0.592	4e-27
449483825	218	PREDICTED: uncharacterized LOC101216887	0.709	0.582	0.592	5e-27
224146286	164	predicted protein [Populus trichocarpa]	0.553	0.603	0.594	2e-25
356495768	221	PREDICTED: uncharacterized protein LOC10	0.625	0.506	0.5	8e-23
226509360	225	uncharacterized protein LOC100273387 [Ze	0.435	0.346	0.653	1e-22
356539020	227	PREDICTED: uncharacterized protein LOC10	0.452	0.356	0.617	2e-22
294461593	233	unknown [Picea sitchensis]	0.435	0.334	0.628	3e-22

>gi|225460141|ref|XP_002275923.1| PREDICTED: uncharacterized protein LOC100243104 isoform 1 [Vitis vinifera] gi|359495234|ref|XP_003634940.1| PREDICTED: uncharacterized protein LOC100243104 isoform 2 [Vitis vinifera] gi|297741015|emb|CBI31327.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 18/170 (10%)

Query: 5   SSISSSSLRTSPSSLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNR 64
           S +++S+    PS L P L         ++I++HF     T++R    + LR+SSS  N 
Sbjct: 2   SLLTNSTTLLRPSKLSPPL----LHPHTASIATHF-----TQRRSRRCNLLRVSSSPQNP 52

Query: 65  TAVDVASPLPTTSNVDGD-DGG-------GAVVVRRFYAGINGRDLASVEELIADDCVYE 116
           TA  +A P+ TT + + + DGG       G+ VVR FYAGIN  DL SVEELIA +CVYE
Sbjct: 53  TAT-IAEPVTTTQSDEANGDGGDESILLSGSSVVRAFYAGINSHDLDSVEELIAHNCVYE 111

Query: 117 DLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHF 166
           DLIFP+PF+GRKA +DFF KF D+IS +LQFVIDDIS  DSSA G   H 
Sbjct: 112 DLIFPQPFVGRKAIMDFFNKFIDTISMELQFVIDDISEADSSAVGVTWHL 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794044|emb|CAN71166.1| hypothetical protein VITISV_035107 [Vitis vinifera]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 108/170 (63%), Gaps = 18/170 (10%)

Query: 5   SSISSSSLRTSPSSLLPCLNQTTFSYSNSTISSHFISTPTTRKRLAPLSKLRISSSENNR 64
           S +++S+    PS L P L         ++I++HF     T++R    + LR+SSS  N 
Sbjct: 2   SLLTNSTTLLRPSKLSPPL----LHPHTASIATHF-----TQRRSRRCNLLRVSSSPQNP 52

Query: 65  TAVDVASPLPTTSNVDGD-DGG-------GAVVVRRFYAGINGRDLASVEELIADDCVYE 116
           TA  +A P+ TT + + + DGG       G+ VVR FYAGIN  DL SVEELIA +CVYE
Sbjct: 53  TAT-IAEPVTTTQSDEANGDGGDESILLSGSSVVRAFYAGINSHDLDSVEELIAHNCVYE 111

Query: 117 DLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHF 166
           DLIFP+PF+GRKA +DFF KF D+IS +LQFVIDBIS  DSSA G   H 
Sbjct: 112 DLIFPQPFVGRKAIMDFFNKFIDTISMELQFVIDBISEADSSAVGVTWHL 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574237|ref|XP_002528033.1| protein transporter, putative [Ricinus communis] gi|223532563|gb|EEF34351.1| protein transporter, putative [Ricinus communis]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 82/123 (66%), Gaps = 5/123 (4%)

Query: 44  TTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLA 103
           + RK     + + +SSS+N        +P P T +   D    + +VRRFY GIN  DLA
Sbjct: 35  SKRKAWTLRTPVSVSSSDNQ-----TVTPSPATKDDAADTQLASDIVRRFYEGINDHDLA 89

Query: 104 SVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKE 163
           SVE+LIA++CVYEDLIFP PF+GRKA L+FFKKF DSIS DLQFVIDDIS EDS A G  
Sbjct: 90  SVEDLIAENCVYEDLIFPHPFVGRKAILEFFKKFIDSISKDLQFVIDDISTEDSLAVGVT 149

Query: 164 SHF 166
            H 
Sbjct: 150 WHL 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450034|ref|XP_004142769.1| PREDICTED: uncharacterized protein LOC101216887 [Cucumis sativus]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 37  SHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAG 96
           SH  ++P+  K  AP S LR+SSS ++  AV V SP PT + +D       VV R FY G
Sbjct: 27  SHSFTSPSIPKP-APYSPLRVSSSSSDNPAVTVPSP-PTDAPLDTLRSASNVV-RDFYDG 83

Query: 97  INGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAED 156
           +N  DLASVE LIA++CVYEDLIF RPF+GRK  L FFKKF+DSIS DLQFVIDDIS ED
Sbjct: 84  VNRHDLASVEPLIAENCVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTED 143

Query: 157 SSANGKESHF 166
           SSA G   H 
Sbjct: 144 SSALGVLWHL 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483825|ref|XP_004156703.1| PREDICTED: uncharacterized LOC101216887 [Cucumis sativus]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 37  SHFISTPTTRKRLAPLSKLRISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAG 96
           SH  ++P+  K  AP S LR+SSS ++  AV V SP PT + +D       VV R FY G
Sbjct: 27  SHSFTSPSIPKP-APYSPLRVSSSSSDNPAVTVPSP-PTDAPLDTLRSASNVV-RDFYDG 83

Query: 97  INGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAED 156
           +N  DLASVE LIA++CVYEDLIF RPF+GRK  L FFKKF+DSIS DLQFVIDDIS ED
Sbjct: 84  VNRHDLASVEPLIAENCVYEDLIFSRPFVGRKDILLFFKKFNDSISKDLQFVIDDISTED 143

Query: 157 SSANGKESHF 166
           SSA G   H 
Sbjct: 144 SSALGVLWHL 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146286|ref|XP_002325950.1| predicted protein [Populus trichocarpa] gi|222862825|gb|EEF00332.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 76/111 (68%), Gaps = 12/111 (10%)

Query: 56  RISSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVY 115
           + SSSEN    V VA  + + S+V          VR FY GING DL SVEELIA++CVY
Sbjct: 1   KASSSENQ--TVTVAPSVESASDV----------VRSFYEGINGHDLDSVEELIAENCVY 48

Query: 116 EDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHF 166
           EDLIFPRPF+GRKA L+FF KF D++S DLQFVIDDIS EDS A G   H 
Sbjct: 49  EDLIFPRPFVGRKAILEFFNKFIDTVSKDLQFVIDDISNEDSFAVGVTWHL 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495768|ref|XP_003516745.1| PREDICTED: uncharacterized protein LOC100802494 [Glycine max]

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 77/116 (66%), Gaps = 4/116 (3%)

Query: 53  SKLRISSSENNRTAVDVASPLPTTSNVDGDD--GGGAVVVRRFYAGINGRDLASVEELIA 110
           SK R+      + +V   +   TT++ D +D     + VVR FY GIN  D+ SVE L+A
Sbjct: 43  SKWRVVDGVGEKQSVTTLAA--TTTSFDDNDVVDSNSAVVRNFYGGINAHDVDSVEYLMA 100

Query: 111 DDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHF 166
           ++CVYEDL+FPRPF+GRK  L+FFKKF++S S  LQFVIDD+S EDSS+ G   H 
Sbjct: 101 ENCVYEDLVFPRPFVGRKEILEFFKKFTNSTSKGLQFVIDDLSTEDSSSVGVIWHL 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226509360|ref|NP_001141296.1| uncharacterized protein LOC100273387 [Zea mays] gi|194703844|gb|ACF86006.1| unknown [Zea mays] gi|414876798|tpg|DAA53929.1| TPA: hypothetical protein ZEAMMB73_536788 [Zea mays]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           VVR+FY G+N RDLA+VE LIA+ CVYEDL+FPRPF+GR+  + FF +F  +IS DLQFV
Sbjct: 72  VVRQFYDGVNRRDLAAVEPLIAEGCVYEDLVFPRPFVGRERVVGFFGEFMGTISPDLQFV 131

Query: 149 IDDISAEDSSANGKESHF 166
           IDDISAEDS+A G   H 
Sbjct: 132 IDDISAEDSAAVGVTWHL 149

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539020|ref|XP_003537998.1| PREDICTED: uncharacterized protein LOC100813246 [Glycine max]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 86  GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDL 145
            + V++ FY GIN  D+ SVE LIA++CVYEDL+FPRPF+GRK  L+FFKKF++S S DL
Sbjct: 82  ASAVLKNFYGGINAHDVDSVEYLIAENCVYEDLVFPRPFVGRKEILEFFKKFTNSTSKDL 141

Query: 146 QFVIDDISAEDSSANGKESHF 166
           QFVIDD+S EDSS+ G   H 
Sbjct: 142 QFVIDDLSTEDSSSVGVIWHL 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461593|gb|ADE76357.1| unknown [Picea sitchensis]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 64/78 (82%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +VR FY+ IN R+L  V ELIA++CVY+DL+FP+PF+GRK  +DFFKKF+D+ S+DLQFV
Sbjct: 91  IVREFYSRINSRELEFVGELIAENCVYDDLVFPQPFVGRKDIIDFFKKFTDATSTDLQFV 150

Query: 149 IDDISAEDSSANGKESHF 166
           IDDI++EDSSA G   H 
Sbjct: 151 IDDITSEDSSAVGITWHL 168

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2825304	216	AT1G71480 [Arabidopsis thalian	0.407	0.337	0.575	2.3e-16

TAIR|locus:2825304 AT1G71480 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 42/73 (57%), Positives = 47/73 (64%)

Query:    93 FYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLXXXXXXXXXXXXXLQFVIDDI 152
             FYA +N  DL+SV +LIA DCVYEDL+F  PF+GRKA L             LQFVIDDI
Sbjct:    78 FYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDFFGKFIESTSTDLQFVIDDI 137

Query:   153 SAEDSSANGKESH 165
             S EDSSA G   H
Sbjct:   138 STEDSSAVGVSWH 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       133   0.00091  102 3  11 22  0.40    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  119 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.17u 0.18s 12.35t   Elapsed:  00:00:00
  Total cpu time:  12.17u 0.18s 12.35t   Elapsed:  00:00:00
  Start:  Fri May 10 19:28:50 2013   End:  Fri May 10 19:28:50 2013

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam12680	101	pfam12680, SnoaL_2, SnoaL-like domain	1e-11
pfam07366	126	pfam07366, SnoaL, SnoaL-like polyketide cyclase	4e-08
pfam02136	116	pfam02136, NTF2, Nuclear transport factor 2 (NTF2)	7e-07
TIGR02096	129	TIGR02096, TIGR02096, conserved hypothetical prote	2e-06
cd00781	122	cd00781, ketosteroid_isomerase, ketosteroid isomer	0.003

>gnl|CDD|221707 pfam12680, SnoaL_2, SnoaL-like domain

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 90  VRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVI 149
           VRRFY  +N  DL ++ EL+A D V+ D     P  GR+A   F      +   DL+F I
Sbjct: 1   VRRFYEALNAGDLDALAELLAPDVVFHDP--GGPLRGREALRAFLAALFAAF-PDLRFEI 57

Query: 150 DDISAED 156
           + + A+ 
Sbjct: 58  ERVIADG 64

This family contains a large number of proteins that share the SnoaL fold. Length = 101

>gnl|CDD|219387 pfam07366, SnoaL, SnoaL-like polyketide cyclase

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 87  AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQ 146
           A+V+R +    N  DL ++ E +A+D V+          G +    F + F  +   DL+
Sbjct: 1   ALVLRFYDEVWNTGDLDALGEFVAEDVVHHTPPPGVAR-GLEGFRAFAEDFFRAF-PDLR 58

Query: 147 FVIDDISAED 156
           F ++D+ AE 
Sbjct: 59  FEVEDLVAEG 68

This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation. Length = 126

>gnl|CDD|216894 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
            V+R+YA ++  D   +  L  DD   ED     P  GR+A  +FF        + +Q +
Sbjct: 5   FVQRYYAALDAGDPEGLAALYYDDASVEDPPGQSPVTGREAINEFFDSL---PFTRIQHL 61

Query: 149 IDDISAEDSSANG 161
           I  + A+ +S + 
Sbjct: 62  ITSVDAQPASHSD 74

This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. Length = 116

>gnl|CDD|233725 TIGR02096, TIGR02096, conserved hypothetical protein, steroid delta-isomerase-related

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 90  VRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVI 149
            + +    N  D+ +V  L+A+D +Y+D    R   G+     F   +  +   DL   +
Sbjct: 4   AQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAF-PDLLVDV 62

Query: 150 DDISAEDSSANGKES 164
                ++      E 
Sbjct: 63  VVCRNDEGVRVAAEW 77

This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes. Length = 129

>gnl|CDD|238404 cd00781, ketosteroid_isomerase, ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFF 134
            V+R+   +N  D   +  L ADD   ED +   P  GR A   F+
Sbjct: 8   AVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFY 53

Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
cd00781	122	ketosteroid_isomerase ketosteroid isomerase: Many	99.4
TIGR02096	129	conserved hypothetical protein, steroid delta-isom	99.4
PF12680	102	SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8	99.35
PF07366	126	SnoaL: SnoaL-like polyketide cyclase; InterPro: IP	99.25
PRK08241	339	RNA polymerase factor sigma-70; Validated	99.01
PF07858	125	LEH: Limonene-1,2-epoxide hydrolase catalytic doma	98.91
TIGR02246	128	conserved hypothetical protein. This family consis	98.87
TIGR02960	324	SigX5 RNA polymerase sigma-70 factor, TIGR02960 fa	98.86
PF13474	121	SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE	98.68
PRK09636	293	RNA polymerase sigma factor SigJ; Provisional	98.61
COG4319	137	Ketosteroid isomerase homolog [Function unknown]	98.44
PF14534	107	DUF4440: Domain of unknown function (DUF4440); PDB	98.39
cd00531	124	NTF2_like Nuclear transport factor 2 (NTF2-like) s	98.35
TIGR02957	281	SigX4 RNA polymerase sigma-70 factor, TIGR02957 fa	98.24
COG3631	133	Ketosteroid isomerase-related protein [General fun	98.07
PF13577	127	SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RF	98.05
PRK09635	290	sigI RNA polymerase sigma factor SigI; Provisional	97.72
PF02136	118	NTF2: Nuclear transport factor 2 (NTF2) domain; In	97.58
COG4922	129	Uncharacterized protein conserved in bacteria [Fun	97.56
PF10184	113	DUF2358: Uncharacterized conserved protein (DUF235	97.56
COG4308	130	LimA Limonene-1,2-epoxide hydrolase [Secondary met	97.35
PF07080	143	DUF1348: Protein of unknown function (DUF1348); In	97.28
PF08332	128	CaMKII_AD: Calcium/calmodulin dependent protein ki	97.22
COG5485	131	Predicted ester cyclase [General function predicti	97.1
COG4538	112	Uncharacterized conserved protein [Function unknow	96.8
PF09150	159	Carot_N: Orange carotenoid protein, N-terminal ; I	96.47
cd00667	160	ring_hydroxylating_dioxygenases_beta Ring hydroxyl	96.44
PF12893	116	Lumazine_bd_2: Putative lumazine-binding; PDB: 3BL	96.08
cd00780	119	NTF2 Nuclear transport factor 2 (NTF2) domain play	95.96
PF05223	118	MecA_N: NTF2-like N-terminal transpeptidase domain	95.72
PF11533	125	DUF3225: Protein of unknown function (DUF3225); In	95.52
COG4875	156	Uncharacterized protein conserved in bacteria with	94.89
PF12870	111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	94.77
PRK10069	183	3-phenylpropionate dioxygenase subunit beta; Provi	93.39
COG3558	154	Uncharacterized protein conserved in bacteria [Fun	92.8
PF03284	162	PHZA_PHZB: Phenazine biosynthesis protein A/B; Int	90.35
KOG4457	202	consensus Uncharacterized conserved protein [Funct	82.18
TIGR03231	155	anthran_1_2_B anthranilate 1,2-dioxygenase, small	80.94

>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon

Probab=99.40  E-value=2.6e-12  Score=95.25  Aligned_cols=88  Identities=22%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~egD~~aV~v  162 (179)
                      ...++++++|+++||++|++.+.+||+||++|++|..+.|++|++++++++..+.+..+ ++++.+.. +..|+..++.+
T Consensus         3 ~~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~   81 (122)
T cd00781           3 QEMKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAK-RLELTGPVRASHGGEAAFAF   81 (122)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCc-eEEecCceeeecCCEEEEEE
Confidence            34788999999999999999999999999999998766689999999999999987754 56665544 34566445555


Q ss_pred             EEEEEeCCce
Q 030318          163 ESHFLSAKVA  172 (179)
Q Consensus       163 ~w~lew~~~~  172 (179)
                      +|+...++..
T Consensus        82 ~~~~~~~g~~   91 (122)
T cd00781          82 RVEFEWEGQP   91 (122)
T ss_pred             EEEEEeCCce
Confidence            6666666543

Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.

>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related

Probab=99.40  E-value=3e-12  Score=95.43  Aligned_cols=79  Identities=18%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEEEEEE
Q 030318           88 VVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFL  167 (179)
Q Consensus        88 ~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~w~le  167 (179)
                      +++++||++||++|++.+.++|+||++|++|+.+.++.|++++++++..+++.++ ++++++.++..++...+.+.|+++
T Consensus         2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~v~~~~~~~   80 (129)
T TIGR02096         2 ELAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFP-DLLVDVVVCRNDEGVRVAAEWTVH   80 (129)
T ss_pred             HHHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCc-hhhceeEEEEecCCcEEEEEEEEe
Confidence            6899999999999999999999999999998877778889999999999999997 789999987544333666666654

This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.

>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A

Probab=99.35  E-value=5.7e-12  Score=88.06  Aligned_cols=74  Identities=35%  Similarity=0.527  Sum_probs=64.4

Q ss_pred             HHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEEEEEEe
Q 030318           90 VRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKESHFLS  168 (179)
Q Consensus        90 VrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~w~lew  168 (179)
                      |++||++||++|++.+.++|+||++|++| .+ ++.|+++++++++.++..++ +.++++.++. +||  .+.+.|++..
T Consensus         1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~-~~-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gd--~v~~~~~~~~   75 (102)
T PF12680_consen    1 VRRFFEAWNAGDLDAIAALFAPDAVFHDP-GG-TLRGREAIREFFEEFFESFP-DIRFEIHDIFADGD--RVVVEWTVTG   75 (102)
T ss_dssp             HHHHHHHHHTTHHHHHHHTEEEEEEEEET-TS-EEESHHHHHHHHHHHHHHEE-EEEEEEEEEEEETT--EEEEEEEEEE
T ss_pred             CHHHHHHHHcCCHHHHHHHcCCCEEEEeC-CC-cccCHHHHHHHHHHHHhcCC-ceEEEEEEEEEcCC--EEEEEEEEEE
Confidence            78999999999999999999999999988 44 58999999999999999886 7899999965 555  6666777764

...

>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis

Probab=99.25  E-value=2.5e-11  Score=91.00  Aligned_cols=78  Identities=33%  Similarity=0.546  Sum_probs=62.9

Q ss_pred             HHHHHH-HHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEEEEE
Q 030318           89 VVRRFY-AGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKESHF  166 (179)
Q Consensus        89 vVrrfy-eA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~w~l  166 (179)
                      +|+++| ++||++|++.+.++++||+++++++. ++..|++++++++..++.+|| |++++++++. +||  .|.++|++
T Consensus         2 ~v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~-~~~~G~~~~~~~~~~~~~afP-D~~~~i~~~~~~gd--~v~~~~~~   77 (126)
T PF07366_consen    2 IVRRFYEEVWNRGDLDALDELVAPDVVFHDPGP-GPPVGREGFKEFLKELRAAFP-DLRFEIEDVVAEGD--RVAVRWTF   77 (126)
T ss_dssp             HHHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTT-TEEEHHHHHHHHHHHHHHHST-TTEEEEEEEEEETT--EEEEEEEE
T ss_pred             HHHHHHHHHHhCCCHHHHHHhcCCCEEEEecCC-CCCCCHHHHHHHHHHHHHHCC-CCEEEEEEEEEECC--EEEEEEEE
Confidence            455555 57899999999999999999998766 578899999999999999998 8999999964 666  55566655


Q ss_pred             EeCC
Q 030318          167 LSAK  170 (179)
Q Consensus       167 ew~~  170 (179)
                      +-.+
T Consensus        78 ~Gth   81 (126)
T PF07366_consen   78 TGTH   81 (126)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            4443

This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.

>PRK08241 RNA polymerase factor sigma-70; Validated

Probab=99.01  E-value=2.5e-09  Score=93.23  Aligned_cols=74  Identities=19%  Similarity=0.306  Sum_probs=60.4

Q ss_pred             CCCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcC-CCeEEEEEeeecCC
Q 030318           82 DDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS-SDLQFVIDDISAED  156 (179)
Q Consensus        82 ~~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp-~dl~~~I~ev~egD  156 (179)
                      ....++++|++||+||++||++++.+||+||++|++|++++|++|++++++||..+..... .+.++... +..|+
T Consensus       212 ~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~-~~~g~  286 (339)
T PRK08241        212 DDPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPT-RANGQ  286 (339)
T ss_pred             CChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEe-ecCCC
Confidence            3478999999999999999999999999999999999988889999999999999754432 24444333 33444

>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism

Probab=98.91  E-value=2.9e-09  Score=82.99  Aligned_cols=68  Identities=38%  Similarity=0.665  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHHHHhCCCHHH-HHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeec
Q 030318           85 GGAVVVRRFYAGINGRDLAS-VEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISA  154 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~da-l~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~e  154 (179)
                      .+.++|++|+++|...|+++ +..++++|++||+.|++ |++|+++++++++.+...+. .+++.++.++.
T Consensus         2 ~~~~vV~~F~~a~~~~D~~~a~~~~~~~d~vy~Nvplp-~i~G~~~~~~~l~~~~~~~~-~~e~~i~~iaa   70 (125)
T PF07858_consen    2 TPEEVVRAFLAALEDRDVDAALASLFDDDAVYHNVPLP-PIRGRDAIRAFLRGFLDSLS-GFEFDIHRIAA   70 (125)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHCEECC-EEEETTTE-EEESHHHHHHHHHCCHCCCE-EEEEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHhcCCCcEEEeCCCC-CcccHHHHHHHHHHHhcccc-eeEEEEEEEee
Confidence            47899999999999999875 56799999999999999 79999999999999965553 67777777653

Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.

>TIGR02246 conserved hypothetical protein

Probab=98.87  E-value=3.2e-08  Score=73.02  Aligned_cols=84  Identities=12%  Similarity=0.108  Sum_probs=62.1

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCC--eEEEEEeee-cCCCc-eE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSD--LQFVIDDIS-AEDSS-AN  160 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~d--l~~~I~ev~-egD~~-aV  160 (179)
                      ..++++.+|+++||++|.+.+.++|++|++|..++ +.++.|+++++++|+.++..++..  +++++.++. .|+.. .+
T Consensus         5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~-g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~   83 (128)
T TIGR02246         5 AIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVP-GQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIV   83 (128)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCC-CCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEE
Confidence            46789999999999999999999999999998543 347899999999999988777644  455544543 45422 23


Q ss_pred             EEEEEEEeC
Q 030318          161 GKESHFLSA  169 (179)
Q Consensus       161 ~v~w~lew~  169 (179)
                      ...+++...
T Consensus        84 ~~~~~~~~~   92 (128)
T TIGR02246        84 HAIQTITAP   92 (128)
T ss_pred             EEEEEEEcC
Confidence            334445443

This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.

>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family

Probab=98.86  E-value=2.1e-08  Score=86.51  Aligned_cols=65  Identities=17%  Similarity=0.388  Sum_probs=56.4

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHH--HHhcCCCeEEE
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF--SDSISSDLQFV  148 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~--~~afp~dl~~~  148 (179)
                      ...+.+++.+||++|++||++++.+|++||++|++|+..+|+.|++++.+||..+  ...++ +.++.
T Consensus       203 ~~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~-~~~~~  269 (324)
T TIGR02960       203 SPEEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAA-GMRLL  269 (324)
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCC-ceeEE
Confidence            3567899999999999999999999999999999998888999999999999998  44443 44443

This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.

>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B

Probab=98.68  E-value=2.1e-07  Score=67.63  Aligned_cols=65  Identities=17%  Similarity=0.318  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee
Q 030318           87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI  152 (179)
Q Consensus        87 ~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev  152 (179)
                      ++++.+|+++|+++|++.+.++|+||+++-++.-++...|+++++++++..++.++ .+++++.++
T Consensus         2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~   66 (121)
T PF13474_consen    2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFR-PISIEFEDV   66 (121)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHS-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCc-eEEEEEEEE
Confidence            57899999999999999999999999999886666667899999999999998774 788888774

>PRK09636 RNA polymerase sigma factor SigJ; Provisional

Probab=98.61  E-value=2.7e-07  Score=79.36  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=51.4

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEee------CCCCCCccCHHHHHHHHHHHHHhcC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYED------LIFPRPFLGRKATLDFFKKFSDSIS  142 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~d------p~~~~Pi~Greav~~ff~~~~~afp  142 (179)
                      ..+.+++++|++|+++||++++.+|++||++|+.      ++..+|+.|++++.+||..+...++
T Consensus       171 ~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~  235 (293)
T PRK09636        171 EEGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYG  235 (293)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhcc
Confidence            4578899999999999999999999999999995      2334578999999999999987654

>COG4319 Ketosteroid isomerase homolog [Function unknown]

Probab=98.44  E-value=1.8e-06  Score=68.39  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee---cCC
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS---AED  156 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~---egD  156 (179)
                      ..++++..|-+|+|++|++++.++|+||+++-+++ +-+..|++++++.|+..+..+...++|+.+++.   .||
T Consensus        11 ~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~-~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD   84 (137)
T COG4319          11 AIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPP-GLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGD   84 (137)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCC-CCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCC
Confidence            45677788888999999999999999999999776 446899999999999999887778899998864   455

>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A

Probab=98.39  E-value=1.4e-06  Score=61.47  Aligned_cols=83  Identities=20%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEEEE
Q 030318           87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKESH  165 (179)
Q Consensus        87 ~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~w~  165 (179)
                      .++.++|.+|++++|++++.++|+||+++..+. + +..|++++.+.+....... ..++++..++. .||...+..+|+
T Consensus         2 ~a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~-g-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~v~~~gd~a~~~~~~~   78 (107)
T PF14534_consen    2 RALEEQYEDAFNAGDIDALASLYADDFVFVGPG-G-TILGKEAILAAFKSGFARF-SSIKFEDVEVRVLGDTAVVRGRWT   78 (107)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHTTEEEEEEEEETT-S-EEEEHHHHHHHHHHHCEEE-EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCHHHHHhhhCCCEEEECCC-C-CEeCHHHHHHHHhhccCCC-ceEEEEEEEEEEECCEEEEEEEEE
Confidence            478899999999999999999999999998654 3 4569999998888743222 24555555542 477666667888


Q ss_pred             EEeCCce
Q 030318          166 FLSAKVA  172 (179)
Q Consensus       166 lew~~~~  172 (179)
                      +++.+..
T Consensus        79 ~~~~~~g   85 (107)
T PF14534_consen   79 FTWRGDG   85 (107)
T ss_dssp             EEETTTT
T ss_pred             EEEecCC
Confidence            8887643

>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily

Probab=98.35  E-value=5.1e-06  Score=58.78  Aligned_cols=84  Identities=18%  Similarity=0.101  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC---CCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eecCCC---ce
Q 030318           87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIF---PRPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISAEDS---SA  159 (179)
Q Consensus        87 ~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~---~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~egD~---~a  159 (179)
                      ++++.+|+++++.+|.+.+..+|+||++++.+..   ..+..|+++++++++.+....+...|+.... +...+.   ..
T Consensus         2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~   81 (124)
T cd00531           2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV   81 (124)
T ss_pred             HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence            5789999999999999999999999999997664   2568999999999998875322233442222 222221   34


Q ss_pred             EEEEEEEEeCC
Q 030318          160 NGKESHFLSAK  170 (179)
Q Consensus       160 V~v~w~lew~~  170 (179)
                      +.+.|.++..+
T Consensus        82 ~~~~~~~~~~~   92 (124)
T cd00531          82 VSVFGVLRTRG   92 (124)
T ss_pred             EEEEEEEEEcc
Confidence            55566776665

This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea

>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family

Probab=98.24  E-value=4.9e-06  Score=71.50  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=53.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEee------CCCCCCccCHHHHHHHHHHHHHhcCCCeEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYED------LIFPRPFLGRKATLDFFKKFSDSISSDLQFVI  149 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~d------p~~~~Pi~Greav~~ff~~~~~afp~dl~~~I  149 (179)
                      ...+++.+|.+|+++||++++.+|++||+++.-      ++...|++|++.|.+|+......+..+.++..
T Consensus       165 ~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~  235 (281)
T TIGR02957       165 ESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDP  235 (281)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEE
Confidence            456899999999999999999999999999985      56677899999999999887654433444443

This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.

>COG3631 Ketosteroid isomerase-related protein [General function prediction only]

Probab=98.07  E-value=2.2e-05  Score=61.67  Aligned_cols=81  Identities=22%  Similarity=0.256  Sum_probs=61.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC----CCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF----PRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~----~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~  158 (179)
                      +.+.++|+++|+++.+||.+.+.+|+++|++|.-|..    +....|++..+.+|..+-..+. ...++++.+ .+||.+
T Consensus         4 ~~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~-~~~~~~~~~~~~gD~~   82 (133)
T COG3631           4 MDNTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIE-DGRFTVETVYVSGDPV   82 (133)
T ss_pred             chhhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcc-cccccceEEEEcCCce
Confidence            5789999999999999999999999999999985332    2334577777888888877763 567888775 467744


Q ss_pred             eEEEEEEE
Q 030318          159 ANGKESHF  166 (179)
Q Consensus       159 aV~v~w~l  166 (179)
                      . .+.|..
T Consensus        83 ~-~v~~~~   89 (133)
T COG3631          83 G-AVFRTR   89 (133)
T ss_pred             E-EEEEec
Confidence            4 344443

>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B

Probab=98.05  E-value=2.3e-05  Score=57.52  Aligned_cols=83  Identities=18%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC-CCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-PRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKES  164 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~-~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~w  164 (179)
                      .++++.+|..++..+|++.+.++|++|+++.-+++ .+.+.|++++.+++...........|+....+++-|+..+.++|
T Consensus         9 I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~~~   88 (127)
T PF13577_consen    9 IRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATVRS   88 (127)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEEEE
Confidence            56788899999999999999999999999987765 34689999999999999876654445544443322233566666


Q ss_pred             EEEe
Q 030318          165 HFLS  168 (179)
Q Consensus       165 ~lew  168 (179)
                      .+..
T Consensus        89 ~~~~   92 (127)
T PF13577_consen   89 YVLA   92 (127)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional

Probab=97.72  E-value=0.00013  Score=63.43  Aligned_cols=55  Identities=16%  Similarity=0.063  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC-CCCCCccCHHHHHHHHHHHHH
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDL-IFPRPFLGRKATLDFFKKFSD  139 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp-~~~~Pi~Greav~~ff~~~~~  139 (179)
                      ...+++.+|.+|+++||++++.+|++||++.-.+ +.+.|++|++.|.+||.....
T Consensus       175 ~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~~~~~~~~~~~~~G~~~v~~~~~~~~~  230 (290)
T PRK09635        175 QHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWS  230 (290)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHhhhhhcCCCcCCCCccccCHHHHHHHHHHhhc
Confidence            4578999999999999999999999999986544 456789999999999987653

>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein

Probab=97.58  E-value=0.00016  Score=53.36  Aligned_cols=84  Identities=20%  Similarity=0.353  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee--e----cCCCce
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI--S----AEDSSA  159 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev--~----egD~~a  159 (179)
                      ....|++||++++++|.+.|..+|++|+.+..+....+++|+++|.++|..+-..   ..++.+..+  .    .++...
T Consensus         2 ~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~---~~~~~i~~~d~qp~~~~~~~i~   78 (118)
T PF02136_consen    2 ANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPAT---GVQHRITSVDCQPSPSSDGSIL   78 (118)
T ss_dssp             HHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTS---SEEEEEEEEEEEEEEECCSEEE
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCc---ccEEEecccccccccccCCcEE
Confidence            4678999999999999999999999888887655444799999999999988543   135555443  2    234567


Q ss_pred             EEEEEEEEeCCce
Q 030318          160 NGKESHFLSAKVA  172 (179)
Q Consensus       160 V~v~w~lew~~~~  172 (179)
                      +.|.+.++..+..
T Consensus        79 i~v~G~~~~~~~~   91 (118)
T PF02136_consen   79 ITVTGQFKEDDNP   91 (118)
T ss_dssp             EEEEEEEEETTSE
T ss_pred             EEEEeEEEecCCC
Confidence            7778888887775

NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....

>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.56  E-value=0.00055  Score=53.18  Aligned_cols=82  Identities=17%  Similarity=0.289  Sum_probs=65.3

Q ss_pred             CcHHHHHHHHHH-HHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eecCCCceEE
Q 030318           84 GGGAVVVRRFYA-GINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISAEDSSANG  161 (179)
Q Consensus        84 ~~~~~vVrrfye-A~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~egD~~aV~  161 (179)
                      ..|++++-.||. +|++|.++.+.+++.|-..=|+|..+.   ||+++.+||.+++..-| ..+..|-. +++||  -|.
T Consensus         5 ~~N~~~v~~~y~~~~~~g~veka~a~~vd~YiQHnp~vpd---Gk~~fv~fFt~ffk~~P-~~~~kiVr~iadGd--LV~   78 (129)
T COG4922           5 HANKQVVIQFYRTLFEAGEVEKADAYLVDRYIQHNPMVPD---GKDGFVRFFTEFFKEKP-RISTKIVRVIADGD--LVT   78 (129)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHhhhhhhhHHHhcCCCCCC---chHHHHHHHHHHHHhCc-cccceeeEEeccCC--EEE
Confidence            357888999998 689999999999999888878887774   99999999999998776 45555555 55666  666


Q ss_pred             EEEEEEeCCc
Q 030318          162 KESHFLSAKV  171 (179)
Q Consensus       162 v~w~lew~~~  171 (179)
                      +..|=.|+..
T Consensus        79 vh~hqt~~~p   88 (129)
T COG4922          79 VHYHQTVSEP   88 (129)
T ss_pred             EEEeeeeCCC
Confidence            7777777763

>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins

Probab=97.56  E-value=0.00056  Score=51.73  Aligned_cols=66  Identities=17%  Similarity=0.171  Sum_probs=50.1

Q ss_pred             CCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHH---HHHHHHhcCCCeEEEEEeeecCCCceEEEEEEEEe
Q 030318           99 GRDLASVEELIADDCVYEDLIFPRPFLGRKATLDF---FKKFSDSISSDLQFVIDDISAEDSSANGKESHFLS  168 (179)
Q Consensus        99 a~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~f---f~~~~~afp~dl~~~I~ev~egD~~aV~v~w~lew  168 (179)
                      .++.+  .++|+|||+|.||-..  +.|++.+++.   ++-+...+-.++++++.++...+...+.++|++.+
T Consensus        16 ~~~~~--~~iY~~dv~F~Dp~~~--f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~~~g   84 (113)
T PF10184_consen   16 TGDLD--YSIYDEDVVFIDPIVS--FKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWRLRG   84 (113)
T ss_pred             cCCCC--hhhcCCCeEEECCCCc--eecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEEEEE
Confidence            44444  4599999999997654  8999999988   55555534358999999987544349999999965

The function is unknown.

>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.35  E-value=0.00049  Score=53.72  Aligned_cols=69  Identities=22%  Similarity=0.263  Sum_probs=56.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHh-hhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeec
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEE-LIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISA  154 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~e-LfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~e  154 (179)
                      ..+.++|+.|+.||..-|.+++.. |+.+|-+|.+++++. ++|+++..++++..+... ...+|.|+.++.
T Consensus         6 ~~pi~~V~aF~aA~~~~d~~~avr~~~~~d~v~~n~gis~-i~G~~~~ia~l~~~~~~~-~~~ef~I~riAa   75 (130)
T COG4308           6 PEPIRTVEAFLAALQEDDGDAAVRRLGTPDTVYNNVGIST-IHGPAETIALLRPRMAGI-LGFEFKILRIAA   75 (130)
T ss_pred             CCcHHHHHHHHHHHHhcCccHHHHHhcCCCeeeccCCccc-ccchhhhhhhhccccCCc-ceeEEEEEEEec
Confidence            458899999999999999987775 666999999999985 899999999999654443 257888887754

>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length

Probab=97.28  E-value=0.0017  Score=51.63  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      .++.+-|+.--++||.+|.+.+.--|++|++|.+=.  +=+.|+++|.+|+.+=.+.= .+.+. +.++ +-. ...++|
T Consensus        10 etA~~KVr~AEdaWNsrdP~~ValaYT~Ds~WRNR~--eF~~GR~~I~~FLtrKW~rE-~~YrL-iKELwaf~-~nRIAV   84 (143)
T PF07080_consen   10 ETAIQKVRAAEDAWNSRDPEKVALAYTPDSVWRNRD--EFLTGREEIVAFLTRKWERE-LDYRL-IKELWAFT-DNRIAV   84 (143)
T ss_dssp             HHHHHHHHHHHHHHTTT-HHHHHTTEEEEEEEEETT--EEE-SHHHHHHHHHHHHHHS-EEEEE-EEEEEEEE-TTEEEE
T ss_pred             HHHHHHHHHHHhccccCChhHheeccCCCCcccCcc--cccCcHHHHHHHHHHHHHHh-hhhhh-HHhhhhcc-CCeEEE
Confidence            457778888889999999999999999999999732  23789999999999887542 23333 3454 322 259999


Q ss_pred             EEEEEeCCce
Q 030318          163 ESHFLSAKVA  172 (179)
Q Consensus       163 ~w~lew~~~~  172 (179)
                      +..-||.+.+
T Consensus        85 RF~YE~~d~~   94 (143)
T PF07080_consen   85 RFAYEWHDDS   94 (143)
T ss_dssp             EEEEEEE-TT
T ss_pred             EEeEEEEcCC
Confidence            9999998865

The function of this family is unknown.; PDB: 2IMJ_B.

>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.22  E-value=0.0017  Score=50.78  Aligned_cols=65  Identities=20%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhCCCHHHHHhhhccC-ceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe
Q 030318           87 AVVVRRFYAGINGRDLASVEELIADD-CVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD  151 (179)
Q Consensus        87 ~~vVrrfyeA~Na~D~dal~eLfApD-~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e  151 (179)
                      .++..++.++++.||++...+|++|| .+++...-+.+..|.+.++.||..++..=|...+..|.+
T Consensus         6 ~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~   71 (128)
T PF08332_consen    6 AALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILN   71 (128)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecC
Confidence            45677888899999999999999999 777744446788999999999999987766566556655

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.

>COG5485 Predicted ester cyclase [General function prediction only]

Probab=97.10  E-value=0.0021  Score=50.45  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eecCCCceEEEEEEE
Q 030318           88 VVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISAEDSSANGKESHF  166 (179)
Q Consensus        88 ~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~egD~~aV~v~w~l  166 (179)
                      +..+.|++.+|..+.+.+-. +-+|++.++   + ...|.++++++..+.+.++| |+.|+++. |+++|.++...+..+
T Consensus        10 ~~y~Ay~d~ln~q~~~~l~~-fv~~~v~~n---g-~~~glsgyr~ml~~df~aiP-dl~f~ie~lvae~~~vaarl~Fdc   83 (131)
T COG5485          10 DRYRAYLDCLNRQAWDELGS-FVDGNVMHN---G-RLQGLSGYREMLVRDFSAIP-DLSFEIERLVAEGDRVAARLTFDC   83 (131)
T ss_pred             HHHHHHHHhhhhhhhhhccc-CCcCeeeeC---C-ceechHHHHHHHHhhHhhCC-CcceEEEEEeecCCceEEEEEEcc
Confidence            78899999999999887754 445666664   3 25699999999999999998 89999999 567875555555544


Q ss_pred             Ee
Q 030318          167 LS  168 (179)
Q Consensus       167 ew  168 (179)
                      +-
T Consensus        84 tp   85 (131)
T COG5485          84 TP   85 (131)
T ss_pred             Cc
Confidence            43

>COG4538 Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.015  Score=44.20  Aligned_cols=63  Identities=17%  Similarity=0.086  Sum_probs=48.1

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVI  149 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I  149 (179)
                      .++.++++=.+|.|++|+++....|++||++...+.-----|.+++++++.+.+.. | +++..+
T Consensus         4 e~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv~~f~a~~~~gg~aaira~y~e~FaE-p-~~~~~l   66 (112)
T COG4538           4 EPEDVVQRQLAAYNAGDVDAFAAEFDDDAVVTTFDALDGDGGTAAIRAAYGEQFAE-P-APEISL   66 (112)
T ss_pred             chhHHHHHHHHhhccccHHHHHhhcccceEEEecccccccCcHHHHHHHHHHHhcC-C-Ccccee
Confidence            36789999999999999999999999999998533211123889999999888865 3 444443

>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection

Probab=96.47  E-value=0.00012  Score=59.27  Aligned_cols=23  Identities=13%  Similarity=0.041  Sum_probs=19.2

Q ss_pred             cccCCCCCcEEEecccccccccc
Q 030318           46 RKRLAPLSKLRISSSENNRTAVD   68 (179)
Q Consensus        46 ~~~l~~~qqi~v~~~~~~~~~~~   68 (179)
                      .|+||.+|||||+||.|++||||
T Consensus       136 I~~Ldf~QQItvlR~~V~~MG~d  158 (159)
T PF09150_consen  136 IKQLDFEQQITVLRNIVVDMGFD  158 (159)
T ss_dssp             HHCS-HHHHHHHHHHHHHT-SS-
T ss_pred             HHcCChhhHHHHHHHHHHHcCCC
Confidence            39999999999999999999996

They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.

>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit

Probab=96.44  E-value=0.029  Score=43.81  Aligned_cols=55  Identities=16%  Similarity=0.055  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCC---------------ccCHHHHHHHHHHHHHh
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP---------------FLGRKATLDFFKKFSDS  140 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~P---------------i~Greav~~ff~~~~~a  140 (179)
                      ..+++-+|..+++.+|++...+||++|++|.-|+.+..               ..|++.+++.+..+...
T Consensus         6 I~~ll~~ya~~LD~~~~~~w~~lft~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~   75 (160)
T cd00667           6 VEQFLYREARLLDDRRWDEWLALFAEDCHYWVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRTG   75 (160)
T ss_pred             HHHHHHHHHHHhcccCHHHHHHhhccccEEEcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhcC
Confidence            35677777788999999999999999999986554321               14788888887777653

This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.

>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C

Probab=96.08  E-value=0.019  Score=42.71  Aligned_cols=87  Identities=10%  Similarity=0.098  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCC--ccCHHHHHHHHHHHH--HhcCCCeEEEEEeee-cCCCceE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP--FLGRKATLDFFKKFS--DSISSDLQFVIDDIS-AEDSSAN  160 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~P--i~Greav~~ff~~~~--~afp~dl~~~I~ev~-egD~~aV  160 (179)
                      -+++|..|++++..+|.+.+.++|+||+.+.... .++  ....+++.+++....  ..........+..+. .|+  ..
T Consensus         6 I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~--~A   82 (116)
T PF12893_consen    6 IEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-KGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGD--VA   82 (116)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-TTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETT--EE
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-CCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECC--EE
Confidence            4689999999999999999999999999987533 221  235566666666542  233346777777764 454  44


Q ss_pred             EEEEEEEeCCceeeee
Q 030318          161 GKESHFLSAKVAAFIN  176 (179)
Q Consensus       161 ~v~w~lew~~~~~~~~  176 (179)
                      .+..++++. ..-|++
T Consensus        83 ~a~v~~~~~-~~~~~d   97 (116)
T PF12893_consen   83 SAKVEYEFP-GFWFVD   97 (116)
T ss_dssp             EEEEEEEEE-TEEEEE
T ss_pred             EEEEEEEEC-CCceEE
Confidence            455555544 334443

>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus

Probab=95.96  E-value=0.16  Score=37.96  Aligned_cols=81  Identities=10%  Similarity=0.143  Sum_probs=57.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee----ecCCCceE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI----SAEDSSAN  160 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev----~egD~~aV  160 (179)
                      ...+.|+.||..++ .|.+.|..+|+++..+...+ ..++.|+++|.+++..+-.   ...++.+..+    ..++..-+
T Consensus         5 v~~~Fv~~YY~~l~-~~~~~L~~fY~~~s~~~~~~-~~~~~g~~~I~~~l~~lp~---~~~~~~i~~~d~q~~~~~~ili   79 (119)
T cd00780           5 VAKAFVQQYYSIFD-NNREGLHRLYGDTSMLSREG-MKQVTGRDAIVEKLSSLPF---QKTKHKITTVDSQPTPSGGVIV   79 (119)
T ss_pred             HHHHHHHHHHHHHh-cCHHHHHhhcCCCcEEEECC-ceEecCHHHHHHHHHhCCC---cceEEEEEEEeeeEcCCCCEEE
Confidence            35678999999998 88999999999999997654 3468899999998876531   1345555443    23344566


Q ss_pred             EEEEEEEeCC
Q 030318          161 GKESHFLSAK  170 (179)
Q Consensus       161 ~v~w~lew~~  170 (179)
                      .|...+..++
T Consensus        80 ~V~G~~~~~~   89 (119)
T cd00780          80 MVTGSLKLDE   89 (119)
T ss_pred             EEEEEEEECC
Confidence            6666666554

This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.

>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide

Probab=95.72  E-value=0.032  Score=42.07  Aligned_cols=77  Identities=10%  Similarity=0.226  Sum_probs=47.6

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCC-CeEEEEEeeec--CCCceEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISS-DLQFVIDDISA--EDSSANG  161 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~-dl~~~I~ev~e--gD~~aV~  161 (179)
                      .+++++.+|+++|+++|++++-++.+++.        +--.+++.+.+.++.+++++.. ++++....+..  ++...+.
T Consensus         2 ~p~~~~~~f~~aw~~~dy~~m~~~~~~~~--------k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~~   73 (118)
T PF05223_consen    2 SPEETAEAFLEAWEKGDYAAMYELTSDPS--------KSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATVP   73 (118)
T ss_dssp             ---HHHHHHHHHHHTT-HHHHHHTB-HHH--------HHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhhchhh--------hccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEEE
Confidence            46889999999999999999999888775        1134677888888888887763 34553344433  3323444


Q ss_pred             EEEEEEeC
Q 030318          162 KESHFLSA  169 (179)
Q Consensus       162 v~w~lew~  169 (179)
                      ++..+++.
T Consensus        74 ~~~~~~t~   81 (118)
T PF05223_consen   74 YTVTMDTP   81 (118)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEeC
Confidence            44444443

Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.

>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function

Probab=95.52  E-value=0.12  Score=40.62  Aligned_cols=52  Identities=15%  Similarity=0.124  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHH
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF  137 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~  137 (179)
                      -.+...+|.+|+.++|++.|++||.+|-.--.-+..+.+.|.++|++|-..-
T Consensus        12 v~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~E~LyG~~aI~aFR~~R   63 (125)
T PF11533_consen   12 VTAAFDRYERALMANDVDALDALFWDDPRTVRYGAGENLYGHDAIRAFRAAR   63 (125)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETTEEEESHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCCccccCHHHHHHHHhcC
Confidence            4567889999999999999999999886554445566799999999765554

; PDB: 2OWP_A 2RCD_B.

>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]

Probab=94.89  E-value=0.3  Score=38.79  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             cHHHHHHHHHHH----HhCCCHHHHHhhhccCceEeeCCCC-CCccCHHHHHHHHHHHHHhcC
Q 030318           85 GGAVVVRRFYAG----INGRDLASVEELIADDCVYEDLIFP-RPFLGRKATLDFFKKFSDSIS  142 (179)
Q Consensus        85 ~~~~vVrrfyeA----~Na~D~dal~eLfApD~v~~dp~~~-~Pi~Greav~~ff~~~~~afp  142 (179)
                      ..++-|...++.    +..||.+.+.+.++||+|.- |-+. ++-.-+.+++.||..|+..=|
T Consensus        34 ~t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLL-PT~Sn~vR~s~~ei~DYF~~FLk~KP   95 (156)
T COG4875          34 VTEREVAALFDRWNAALTTGDPNKVAANYAPDAVLL-PTMSNQVRSSRSEILDYFSHFLKLKP   95 (156)
T ss_pred             ccHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEee-cccccccccCHHHHHHHHHHHhccCC
Confidence            344444455554    55799999999999999987 5554 344578889999999986544

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria

Probab=94.77  E-value=0.11  Score=37.06  Aligned_cols=32  Identities=13%  Similarity=0.289  Sum_probs=24.0

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCce
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCV  114 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v  114 (179)
                      ...+++++..||+|++.||++.+.+++.++..
T Consensus         6 ~~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~   37 (111)
T PF12870_consen    6 SSTPEEVVKNFFDALKNGDYEKAYAYLSPESR   37 (111)
T ss_dssp             ---HHHHHHHHHHHHCTT-HHHHHHTB--TT-
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHhhCcccc
Confidence            36789999999999999999999999998855

Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.

>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional

Probab=93.39  E-value=0.88  Score=36.92  Aligned_cols=55  Identities=9%  Similarity=-0.039  Sum_probs=39.6

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccC--------------------HHHHHHHHHHHHH
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLG--------------------RKATLDFFKKFSD  139 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~G--------------------reav~~ff~~~~~  139 (179)
                      ...+++-++-.+++.+|++...+||+|||.|.-|..+.+..|                    ++.+++.+..+..
T Consensus        21 eI~~~l~~eA~lLD~~d~~~Wl~lft~D~~Y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Rv~rl~~   95 (183)
T PRK10069         21 EISQFLYREARLLDEWRYDDWLALLAEDIHYTMPMRTTVNAQRRDRREGVQTPPTMAWFDDNKDQLERRVARLET   95 (183)
T ss_pred             HHHHHHHHHHHHhchhhHHHHHHhhccccEEEccccccccccccccccccCCCcccEEEcCCHhHHHHHHHHHhC
Confidence            345566666668999999999999999999985433333443                    4667777777653

>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.80  E-value=0.019  Score=45.30  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      ....+-|+---++||++|.+.+.=.|++|-.|.+-.  +=++|+|.+.+|+.+-.+.= .+.+. |.++ +-+ +..++|
T Consensus        12 eta~~kvr~aed~wnsrdp~kv~layt~ds~wrnra--ef~~gre~i~~fl~rkw~re-~~yrl-ikelwaf~-gnriav   86 (154)
T COG3558          12 ETAIQKVRMAEDAWNSRDPAKVALAYTEDSFWRNRA--EFFQGREKIQEFLTRKWDRE-LEYRL-IKELWAFT-GNRIAV   86 (154)
T ss_pred             HHHHHHHHHhHhccccCChhheeeeeccchhhhhHH--HHHccHHHHHHHHHhhhhHH-HHHHH-HHHHHhhc-CCeEEE
Confidence            456677777778999999999999999999998632  23679999999998765421 11111 2332 222 358999


Q ss_pred             EEEEEeCCcee
Q 030318          163 ESHFLSAKVAA  173 (179)
Q Consensus       163 ~w~lew~~~~~  173 (179)
                      ++.-||.+++.
T Consensus        87 rfayew~dd~g   97 (154)
T COG3558          87 RFAYEWHDDSG   97 (154)
T ss_pred             EEeEeeecccc
Confidence            99999998864

>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic

Probab=90.35  E-value=0.91  Score=36.84  Aligned_cols=81  Identities=16%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEee----CCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYED----LIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~d----p~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~  158 (179)
                      ..|.++|..||. .+..|--.=.+||++|..--.    .+.|--++|++.++++.....+-|| |++|.--.+. ..|..
T Consensus        18 ~~NR~~Ve~Ym~-t~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFP-DWeW~nv~ifeT~DP~   95 (162)
T PF03284_consen   18 RINRATVEQYMN-TKGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFP-DWEWYNVRIFETQDPN   95 (162)
T ss_dssp             HHHHHHHHHHHC---GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHST-T-EEEEEEEEEBSSTT
T ss_pred             HhhHHHHHHHHH-cCchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCC-CcEEEEEEeecccCCC
Confidence            567888888876 333343344589999998642    2333336899999999999999997 8888866664 35555


Q ss_pred             eEEEEEEE
Q 030318          159 ANGKESHF  166 (179)
Q Consensus       159 aV~v~w~l  166 (179)
                      .+-|...+
T Consensus        96 ~fwVEcdG  103 (162)
T PF03284_consen   96 HFWVECDG  103 (162)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEecC
Confidence            55555444

Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....

>KOG4457 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.18  E-value=5  Score=33.45  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=45.2

Q ss_pred             hhhccCceEeeCCCCCCccCHHHHHHHHHHHH---HhcCCCeEEEEEeeec-CCCceEEEEEEEEeCC
Q 030318          107 ELIADDCVYEDLIFPRPFLGRKATLDFFKKFS---DSISSDLQFVIDDISA-EDSSANGKESHFLSAK  170 (179)
Q Consensus       107 eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~---~afp~dl~~~I~ev~e-gD~~aV~v~w~lew~~  170 (179)
                      .+|++|++|+|--+....+|++-+..-|....   ..+=..+++++-.++. -|...|..||++.--.
T Consensus        57 S~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~~Tvr~RWRv~gvs  124 (202)
T KOG4457|consen   57 SFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDEGTVRCRWRVKGVS  124 (202)
T ss_pred             eeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCCceEEEEEEEecce
Confidence            58999999999888877789887765554432   2222367888877652 3446899999987554

>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit

Probab=80.94  E-value=2.3  Score=33.91  Aligned_cols=32  Identities=13%  Similarity=0.083  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHhhhccCceEeeCC
Q 030318           88 VVVRRFYAGINGRDLASVEELIADDCVYEDLI  119 (179)
Q Consensus        88 ~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~  119 (179)
                      +.+-++-..+++++++...+||++||.|+-|.
T Consensus         3 ~~l~~ea~llD~~~~~~W~~lf~~d~~Y~vP~   34 (155)
T TIGR03231         3 QFLYRKAELCDAQDWDAYLDLFDEDSEFHLPQ   34 (155)
T ss_pred             hHHHHHHHHhcccCHHHHHHHhCcCceEEeec
Confidence            45556666789999999999999999999654

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
3fh1_A	129	Uncharacterized NTF2-like protein; structural geno	1e-13
3k0z_A	159	Putative polyketide cyclase; structural genomics,	1e-11
1oh0_A	131	Steroid delta-isomerase; ketosteroid isomerase, KS	6e-11
2gey_A	158	ACLR protein; alpha+beta barrel, oxidoreductase; H	6e-10
2gex_A	152	SNOL; alpha+beta barrel, oxidoreductase; 2.50A {St	2e-09
2f99_A	153	Aklanonic acid methyl ester cyclase, AKNH; anthrac	3e-09
3i0y_A	140	Putative polyketide cyclase; cystatin-like fold, s	9e-09
2bng_A	149	MB2760; epoxide hydrolase, limonene, hydrolase, st	2e-08
1nww_A	149	Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {R	2e-08
1ohp_A	125	Steroid delta-isomerase; inhibitor; HET: ESR; 1.53	2e-08
3f9s_A	146	Putative polyketide cyclase; structural genomics,	8e-08
3rga_A	283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	1e-07
1tuh_A	156	BAL32A, hypothetical protein EGC068; unknown funct	1e-07
1s5a_A	150	Hypothetical protein YESE; structural genomics, PS	2e-07
3mso_A	143	Steroid delta-isomerase; structural genomics, join	2e-07
1z1s_A	163	Hypothetical protein PA3332; beta barrel, conserve	3e-07
3fgy_A	135	Uncharacterized NTF2-like protein; structural geno	3e-07
3g8z_A	148	Protein of unknown function with cystatin-like FO;	3e-07
1sjw_A	144	Nogalonic acid methyl ester cyclase; anthracycline	4e-07
3f8h_A	150	Putative polyketide cyclase; structural genomics,	4e-07
3ebt_A	132	Uncharacterized NTF2-like protein; structural geno	2e-06
3f7s_A	142	Uncharacterized NTF2-like protein; structural geno	3e-06
3ec9_A	140	Uncharacterized NTF2-like protein; structural geno	5e-06
3ehc_A	128	Snoal-like polyketide cyclase; structural genomics	5e-06
3dm8_A	143	Uncharacterized protein RPA4348; siras, putative i	5e-06
3f7x_A	151	Putative polyketide cyclase; structural genomics,	8e-06
3hx8_A	129	MLR2180 protein, putative ketosteroid isomerase; s	2e-05
3rob_A	139	Uncharacterized conserved protein; structural geno	4e-05
3grd_A	134	Uncharacterized NTF2-superfamily protein; NP_97724	4e-05
2a15_A	139	Hypothetical protein RV0760C; beta-alpha-barrel, s	7e-05
3g16_A	156	Uncharacterized protein with cystatin-like fold; Y	9e-05
3d9r_A	135	Ketosteroid isomerase-like protein; YP_049581.1, s	1e-04
3mg1_A	323	OCP, orange carotenoid protein; carotenoid binding	4e-04
3f8x_A	148	Putative delta-5-3-ketosteroid isomerase; structur	4e-04

>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti} Length = 129

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLI---FPRPFLGRKATLDFFKKFSDSISSDL 145
           ++RRF       D A++ ELIA++CV E+ +         GR+A +  +   +       
Sbjct: 22  IMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIAT--QPGT 79

Query: 146 QFVIDDISAEDSSA 159
           +F +++       A
Sbjct: 80  RFDLEETFVAGDRA 93

>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus} Length = 159

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 58  SSSENNRTAVDVASPLPTTSNVDGDDGGGA-------VVVRRFYAGINGRDLASVEELIA 110
                 +T V +   +P    +  D               +RFYA  +      + + + 
Sbjct: 1   GCGVEEKTEVQLLKEMPKPKAMTIDPSLSQKEATEMVHAAQRFYAFWDTGKEELIPQTVT 60

Query: 111 DDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAED 156
           ++     L       G +      + F   +  ++   I+D+    
Sbjct: 61  ENFFDHTL-PKGRPQGTEGLKFAAQNFRKIV-PNIHCEIEDLLVVG 104

>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ... Length = 131

 Score = 56.5 bits (136), Expect = 6e-11
 Identities = 11/68 (16%), Positives = 28/68 (41%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           ++ R+   ++  D+ ++ ++ ADD   ED     P  GR+    F+++            
Sbjct: 12  LMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLT 71

Query: 149 IDDISAED 156
               ++ +
Sbjct: 72  GPVRASHN 79

>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9 Length = 158

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +     A  N  DL+ + +  + D V+         +     +   +    +   DLQ  
Sbjct: 9   LCLEMVAAWNRWDLSGIIKHWSPDIVHYS---EDNEVSSADMVKLMEGGLKAF-PDLQLE 64

Query: 149 IDDISAED 156
           +  I AE+
Sbjct: 65  VKSIMAEE 72

>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9 Length = 152

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
                 A  N  D++ V    A D V+ D       +  +  +       ++   DL+  
Sbjct: 9   RCLEMVAAWNRWDVSGVVAHWAPDVVHYD--DEDKPVSAEEVVRRMNSAVEAF-PDLRLD 65

Query: 149 IDDISAED 156
           +  I  E 
Sbjct: 66  VRSIVGEG 73

>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A* Length = 153

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 9/68 (13%), Positives = 17/68 (25%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
            VRR     N      V + I  + +    +      G +           + S + +  
Sbjct: 16  AVRRMVEAYNTGKTDDVADYIHPEYMNPGTLEFTSLRGPELFAINVAWVKKTFSEEARLE 75

Query: 149 IDDISAED 156
              I    
Sbjct: 76  EVGIEERA 83

>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV} Length = 140

 Score = 50.7 bits (121), Expect = 9e-09
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +V+ +Y   N  D  ++   +A+D  + DL      +GR A   F ++ +DS    L+ +
Sbjct: 13  LVQAYYEAFNRGDWDAMLAFLAEDVAH-DLNQGPREIGRAAFASFLQRMNDSYREQLRDI 71

Query: 149 IDDISAEDSSA 159
           +   + E +  
Sbjct: 72  VVTANDEGTRV 82

>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8 Length = 149

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
            V  F   +   D  +V+  + DD VYE++ F     G + T    ++         +  
Sbjct: 20  AVEAFLNALQNEDFDTVDAALGDDLVYENVGFS-RIRGGRRTATLLRRMQG--RVGFEVK 76

Query: 149 IDDISAEDS 157
           I  I A+ +
Sbjct: 77  IHRIGADGA 85

>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A* Length = 149

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 58  SSSENNRTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYED 117
              +    + D A+   +T +          +V  F   +   D A + E  A+D +Y++
Sbjct: 4   KIEQPRWASKDSAAGAASTPDEK--------IVLEFMDALTSNDAAKLIEYFAEDTMYQN 55

Query: 118 LIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAN 160
           +  P P  GR A          ++ S        I + +    
Sbjct: 56  MPLP-PAYGRDAVEQTLAGL-FTVMSIDAVETFHIGSSNGLVY 96

>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A Length = 125

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           VV+R+ A +N  DL  +  L ADD   E+ +   P  G  A  +F+          ++  
Sbjct: 10  VVQRYVAALNAGDLDGIVALFADDATVENPVGSEPRSGTAAIREFYANSLKL-PLAVELT 68

Query: 149 IDDISAEDSSANGKESHF 166
            +  +  + +A      F
Sbjct: 69  QEVRAVANEAAFAFIVSF 86

>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23} Length = 146

 Score = 48.3 bits (115), Expect = 8e-08
 Identities = 11/72 (15%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 89  VVRRFYAGI-NGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS---SD 144
           ++ +F   + +  ++ + ++ IA            P+ GR+  +  +K+   ++     D
Sbjct: 11  ILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGD-PWEGRELDVAGYKERVKTLRAAFPD 69

Query: 145 LQFVIDDISAED 156
             F I  + A+ 
Sbjct: 70  QCFDIQGLFADG 81

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis} Length = 283

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 13/78 (16%), Positives = 20/78 (25%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           V   +   +N  +L  V +L A D    D +   P +GR A              +    
Sbjct: 11  VALEYCRRVNAGELEGVLQLFAPDARLVDPLGTEPVVGRAALAARLAPALRGAVHEEPGR 70

Query: 149 IDDISAEDSSANGKESHF 166
                   S         
Sbjct: 71  PYAAHDGTSVVLPATVTV 88

>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11 Length = 156

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYE---DLIFPRPFLGRKATLDFFKKFSDSISSDL 145
            VRR YA  N  D+ ++ EL  ++  +             GR+A    F ++        
Sbjct: 34  TVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTF 93

Query: 146 QFVIDDISAEDS 157
           + V+  +   D 
Sbjct: 94  KAVLLHVLKSDD 105

>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10 Length = 150

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLI----FPRPFLGRKATLDFFKKFSDSISSD 144
            +R+F A +  +D+ S  EL  ++ V+E        P+   G+ A  D+ K +   I   
Sbjct: 15  TLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQI-HL 73

Query: 145 LQFVIDDI 152
             F    +
Sbjct: 74  SSFTAPTV 81

>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa} Length = 143

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
            +  ++  I  RDL+ +  L+  D V+   +  +P+ G                 D  + 
Sbjct: 14  TLAEWHGLIARRDLSGLPRLLHPDAVFRSPMAHKPYAGAPVVSMILNTVLTVF-EDFAYH 72

Query: 149 IDDISAEDSSA 159
               SA+  S 
Sbjct: 73  RQLASADGRSV 83

>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10 Length = 163

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYE----DLIFPRPFLGRKATLDFFKKFSDSISSD 144
           ++      +   D     +L   + V E       +   F GR+      + F + ++  
Sbjct: 28  ILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVR 87

Query: 145 LQFVIDDISAEDSSA 159
              V    +A+   A
Sbjct: 88  FTDVQFYETADPDLA 102

>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} Length = 135

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYE---DLIFPRPFLGRKATLDFFKKFSDSISSDL 145
           +V+ F+A +   D   +  + A+D  +    +        G  A     +K S+ +    
Sbjct: 10  IVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKASEMV-EIS 68

Query: 146 QFVIDDISAEDSSA 159
                +  A+    
Sbjct: 69  YPEPPEFVAQGERV 82

>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV} Length = 148

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYE---DLIFPRPFLGRKATLDFFKKFSDSISSDL 145
           + + +   I   D A++  +I+ D ++    +  F     G         K  +  +   
Sbjct: 25  IAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKMMEVSNGTF 84

Query: 146 QFVIDDISAED 156
                D     
Sbjct: 85  AISRADDYMAS 95

>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9 Length = 144

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 13/68 (19%), Positives = 21/68 (30%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +VRR  +  N      V+E I  D +    +      G KA          + S + +  
Sbjct: 7   IVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLE 66

Query: 149 IDDISAED 156
              I    
Sbjct: 67  EVRIEERG 74

>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP} Length = 150

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
            + R++   N  D   +   +++D  +         +G++    F    S     +L  +
Sbjct: 23  TIARYFDAFNAGDTDGMLACLSEDVAHHVNEGNI-RVGKEKFAAFCAHMSHCYKEELTDM 81

Query: 149 IDDISAEDSSA 159
           +   + + + A
Sbjct: 82  VIFATPDATRA 92

>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9 Length = 132

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVY------EDLIFPRPFLGRKATLDFFKKFSDSIS 142
            VR  Y   + RDL  V   +A D  +                G    + F +     I 
Sbjct: 8   TVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHI- 66

Query: 143 SDLQFVIDDISAEDSSA 159
           ++++   D+        
Sbjct: 67  AEMRLAPDEFIESGERI 83

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440} Length = 142

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           ++ R+   +  RD+  +    ADD V  D I    F G+ A    ++      +  + F 
Sbjct: 13  LIERWMQAVRDRDIPGIIAPYADDIVAFDAIQALQFKGKSAYTAHWEMCMGMCTGPMVFE 72

Query: 149 IDDI 152
           +  +
Sbjct: 73  LAQL 76

>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10 Length = 140

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 3/74 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVY---EDLIFPRPFLGRKATLDFFKKFSDSISSDL 145
           +V   YA  +  D A++   IA    +           +      +    +         
Sbjct: 17  IVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGY 76

Query: 146 QFVIDDISAEDSSA 159
            F +D +     + 
Sbjct: 77  TFKLDALHDAGDTV 90

>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str} Length = 128

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +   +   +N +    +   + D+  +          G     D   K    I  DL+F 
Sbjct: 8   IYLAYLDSLNHQAFDELGTFVDDNVEHNG-----RPFGLSGYRDMLVKDFADI-PDLRFE 61

Query: 149 IDDISAED 156
            + + ++ 
Sbjct: 62  AEILVSDA 69

>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20 Length = 143

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDL----IFP--RPFLGRKATLDFFKKFSDSIS 142
             R  +  +N R    +  +I D+  +       +FP      G+ A L+  ++ +DS+ 
Sbjct: 9   FSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSV- 67

Query: 143 SDLQFVIDDISAEDSSA 159
              ++  + +     SA
Sbjct: 68  RIYRYHRESVMLGIDSA 84

>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440} Length = 151

 Score = 42.7 bits (100), Expect = 8e-06
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +V  +YA  N  D+ +   L+++D +++     R  +G+     F +K +      L  +
Sbjct: 25  LVNAYYAAFNAGDMPAFLALLSEDVIHDINQGER-QMGKARFAAFMEKMNRCYRERLADI 83

Query: 149 IDDISAEDSSA 159
           +   +A+ S A
Sbjct: 84  VVMQNADGSRA 94

>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti} Length = 129

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 5/73 (6%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFP--RPFLGRKATLDFFKKFSDSISSDLQ 146
               F    N +D A V     DD        P      GR+     ++   D   S+L+
Sbjct: 11  ANADFVKAYNSKDAAGVASKYMDDAA---AFPPDMARVDGRQNIQKLWQGAMDMGISELK 67

Query: 147 FVIDDISAEDSSA 159
               D+      A
Sbjct: 68  LTTLDVQESGDFA 80

>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus} Length = 139

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           V  R+       D   +  L+ DD V+  L   R   G++  L   ++    +  +    
Sbjct: 22  VQYRWLEATRKFDRQVLSSLMTDDVVF--LTPGRLPFGKEEFLAACEQNDQRVIIEASAT 79

Query: 149 IDDIS 153
            ++I 
Sbjct: 80  FEEIV 84

>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} Length = 134

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 9/72 (12%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCV---YEDLIFPRPFLGRKATLDFFKKFSDSISSDL 145
           ++R  Y G    +   + E +++       E   +   ++G +A ++       S  +D 
Sbjct: 9   IIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDY 68

Query: 146 QFVIDDISAEDS 157
           +  ++       
Sbjct: 69  KASVNMYHEVSG 80

>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A Length = 139

 Score = 40.0 bits (93), Expect = 7e-05
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 7/78 (8%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFL-------GRKATLDFFKKFSDSI 141
             +  +  +   D      L+ADD V ED I             G++A   FF     + 
Sbjct: 12  ASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN 71

Query: 142 SSDLQFVIDDISAEDSSA 159
              +       S+     
Sbjct: 72  RLTVTCEETFPSSSPDEI 89

>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1} Length = 156

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVY--EDLIFPRPFLGRKATLDFFKKFSDSISSDLQ 146
           V+R +Y G N  D A +      + V+     ++   F G       ++   +++ S   
Sbjct: 15  VIRTYYDGCNEADEAKMIACFVPEAVHYFPAGMYGGAFRGAAQIAHRWRTAVETLGS--Y 72

Query: 147 FVIDDISAEDSSA 159
           + ID +  +  +A
Sbjct: 73  WTIDALVIDAETA 85

>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27 Length = 135

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
               +    N  D+ +V     DD V      P   +G+    + +    +++  D+ + 
Sbjct: 16  AAIAYLTAFNRADIPAVIATYTDDGVLMGPGRP-AAVGKDELAEVYLSVFETVGFDMAYE 74

Query: 149 IDDI 152
           I ++
Sbjct: 75  IKEV 78

>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A* Length = 323

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
            V  +   +N  D  ++ EL   D   +   F RP +G++  L FF++   ++    +  
Sbjct: 197 TVLNYMDNLNANDFDTLIELFTSDGALQPP-FQRPIVGKENVLRFFREECQNLKLIPERG 255

Query: 149 IDDISAEDSS---ANGK-ESHFLSAKVAAFINWR 178
           + + + +  +     GK ++ +    V   I WR
Sbjct: 256 VTEPAEDGFTQIKVTGKVQTPWFGGNVGMNIAWR 289

>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043} Length = 148

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFK 135
            ++ ++  I   D   + +L+A+D V+ +     P+ G+   +    
Sbjct: 25  GLQEWHRIIAEADWERLPDLLAEDVVFSNPSTFDPYHGKGPLMVILP 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3mg1_A	323	OCP, orange carotenoid protein; carotenoid binding	99.89
4h3u_A	158	Hypothetical protein; structural genomics, PSI-bio	99.65
3ff2_A	117	Uncharacterized cystatin fold protein (YP_497570.	99.59
3fh1_A	129	Uncharacterized NTF2-like protein; structural geno	99.51
3f9s_A	146	Putative polyketide cyclase; structural genomics,	99.49
3ebt_A	132	Uncharacterized NTF2-like protein; structural geno	99.49
3k0z_A	159	Putative polyketide cyclase; structural genomics,	99.49
3kkg_A	146	Putative snoal-like polyketide cyclase; structural	99.47
2gex_A	152	SNOL; alpha+beta barrel, oxidoreductase; 2.50A {St	99.46
2k54_A	123	Protein ATU0742; protein of unknown function, stru	99.45
2f99_A	153	Aklanonic acid methyl ester cyclase, AKNH; anthrac	99.45
3h3h_A	122	Uncharacterized snoal-like protein; structural gen	99.44
1sjw_A	144	Nogalonic acid methyl ester cyclase; anthracycline	99.44
3ec9_A	140	Uncharacterized NTF2-like protein; structural geno	99.43
3g8z_A	148	Protein of unknown function with cystatin-like FO;	99.43
3g16_A	156	Uncharacterized protein with cystatin-like fold; Y	99.42
3ehc_A	128	Snoal-like polyketide cyclase; structural genomics	99.41
2a15_A	139	Hypothetical protein RV0760C; beta-alpha-barrel, s	99.41
3dm8_A	143	Uncharacterized protein RPA4348; siras, putative i	99.41
3f14_A	112	Uncharacterized NTF2-like protein; YP_680363.1, NT	99.41
3fgy_A	135	Uncharacterized NTF2-like protein; structural geno	99.4
1oh0_A	131	Steroid delta-isomerase; ketosteroid isomerase, KS	99.4
2gey_A	158	ACLR protein; alpha+beta barrel, oxidoreductase; H	99.37
1ohp_A	125	Steroid delta-isomerase; inhibitor; HET: ESR; 1.53	99.36
1nww_A	149	Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {R	99.34
3grd_A	134	Uncharacterized NTF2-superfamily protein; NP_97724	99.34
3g0k_A	148	Putative membrane protein; snoal-like polyketide c	99.33
3mso_A	143	Steroid delta-isomerase; structural genomics, join	99.33
3hk4_A	136	MLR7391 protein; NTF2-like protein, structural gen	99.32
3dxo_A	121	Uncharacterized snoal-like protein; putative isome	99.32
3i0y_A	140	Putative polyketide cyclase; cystatin-like fold, s	99.31
1s5a_A	150	Hypothetical protein YESE; structural genomics, PS	99.29
3dmc_A	134	NTF2-like protein; structural genomics, joint cent	99.29
3f8h_A	150	Putative polyketide cyclase; structural genomics,	99.27
2bng_A	149	MB2760; epoxide hydrolase, limonene, hydrolase, st	99.26
3d9r_A	135	Ketosteroid isomerase-like protein; YP_049581.1, s	99.24
1tuh_A	156	BAL32A, hypothetical protein EGC068; unknown funct	99.24
3f7x_A	151	Putative polyketide cyclase; structural genomics,	99.23
3flj_A	155	Uncharacterized protein conserved in bacteria WIT	99.22
3rga_A	283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	99.21
3en8_A	128	Uncharacterized NTF-2 like protein; YP_553245.1, N	99.2
3er7_A	131	Uncharacterized NTF2-like protein; YP_001812677.1,	99.19
1z1s_A	163	Hypothetical protein PA3332; beta barrel, conserve	99.19
3f8x_A	148	Putative delta-5-3-ketosteroid isomerase; structur	99.16
3hx8_A	129	MLR2180 protein, putative ketosteroid isomerase; s	99.15
3rga_A	283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	99.14
3f40_A	114	Uncharacterized NTF2-like protein; YP_677363.1, NT	99.12
3lyg_A	120	NTF2-like protein of unknown function; structural	98.98
3f7s_A	142	Uncharacterized NTF2-like protein; structural geno	98.96
2gxf_A	142	Hypothetical protein YYBH; alpha-beta protein., st	98.96
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	98.94
3h51_A	156	Putative calcium/calmodulin dependent protein KIN	98.89
3jum_A	185	Phenazine biosynthesis protein A/B; chirality, dru	98.85
3rob_A	139	Uncharacterized conserved protein; structural geno	98.82
3ff0_A	163	Phenazine biosynthesis protein PHZB 2; cystatin-li	98.76
2ux0_A	143	Calcium-calmodulin dependent protein kinase (CAM I	98.7
3cu3_A	172	Domain of unknown function with A cystatin-like F;	98.65
4i4k_A	143	Uncharacterized protein SGCJ; structural genomics,	98.62
3gzr_A	146	Uncharacterized protein with A NTF2-like fold; str	98.6
3bb9_A	148	Putative orphan protein; structural genomics, join	98.45
1tp6_A	128	Hypothetical protein PA1314; structural genomics,	98.41
2chc_A	170	Protein RV3472; hypothetical protein; 1.69A {Mycob	98.36
3b7c_A	122	Uncharacterized protein; NTF-2 like protein, struc	98.33
2rgq_A	144	Domain of unknown function with A cystatin-like F;	98.3
3cnx_A	170	Uncharacterized protein; putative dehydratase, NTF	98.29
3b8l_A	163	Uncharacterized protein; putative aromatic ring hy	98.26
3ke7_A	134	Putative ketosteroid isomerase; structural genomic	98.23
2rcd_A	129	Uncharacterized protein; structural genomics, join	98.23
2rfr_A	155	Uncharacterized protein; structural genomics, join	98.18
3a76_A	176	Gamma-hexachlorocyclohexane dehydrochlorinase; bar	98.11
3ef8_A	150	Putative scyalone dehydratase; YP_496742.1, struct	98.04
3ejv_A	179	Uncharacterized protein with cystatin-like fold; s	97.99
2owp_A	129	Hypothetical protein BXE_B1374; cystatin-like fold	97.89
3gzb_A	154	Putative snoal-like polyketide cyclase; YP_0011826	97.59
2imj_A	166	Hypothetical protein DUF1348; alpha beta protein,	97.58
2r4i_A	123	Uncharacterized protein; NTF2-like protein, struct	97.33
4gb5_A	159	Uncharacterized protein; structural genomics, PSI-	97.26
2f86_B	143	Hypothetical protein K11E8.1D; UNC-43, oligomeriza	97.24
3fsd_A	134	NTF2-like protein of unknown function in nutrient;	97.08
3blz_A	128	NTF2-like protein of unknown function; structural	96.93
3ecf_A	130	NTF2-like protein; structural genomics, joint cent	96.73
3soy_A	145	NTF2-like superfamily protein; structural genomics	96.69
3duk_A	125	NTF2-like protein of unknown function; structural	95.89
2gbw_B	174	Biphenyl 2,3-dioxygenase beta subunit; rieske oxyg	95.46
3eby_A	163	Beta subunit of A putative aromatic-ring-hydroxyl	94.87
1uli_B	187	Biphenyl dioxygenase small subunit; alpha3 BETA3 h	94.84
2b1x_B	172	Naphthalene dioxygenase small subunit; rieske non-	94.6
3fka_A	120	Uncharacterized NTF-2 like protein; structural gen	94.44
3ujm_A	120	Rasputin; NTF2-like fold, RAS signaling, signaling	94.25
2qiy_A	154	UBP3-associated protein BRE5; deubiquitylation, ub	93.69
1wql_B	186	Ethylbenzene dioxygenase small subunit; biphenyl d	93.34
3ksp_A	129	Calcium/calmodulin-dependent kinase II associatio;	93.16
3e99_A	164	Benzoate 1,2-dioxygenase beta subunit; structural	92.45
1zo2_A	129	NTF2, nuclear transport factor 2; structural genom	92.15
1idp_A	172	Scytalone dehydratase; lyase, melanine biosynthesi	91.81
1gy6_A	127	Nuclear transport factor 2; 1.6A {Rattus norvegicu	90.86
3nv0_B	154	NTF2-related export protein; NTF2-like domain, bet	90.55
1gy7_A	125	Nuclear transport factor 2; protein transport; 1.6	89.98
1jkg_A	140	P15; NTF2-like domain, transport protein; 1.90A {H	89.34
3gzx_B	186	Biphenyl dioxygenase subunit beta; rieskie, non-he	89.12
2bmo_B	194	Oxygenase-beta NBDO; nitrobenzene dioxygenase, nit	88.84
3q90_A	140	RAS GTPase-activating protein-binding protein 1; s	88.54
1vqq_A	646	Saupbp2A, penicillin-binding protein MECA, low-aff	84.3

>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*

Probab=99.89  E-value=1.4e-24  Score=188.35  Aligned_cols=127  Identities=14%  Similarity=0.234  Sum_probs=109.3

Q ss_pred             cccCCCCCcEEEecccccccccc-------ccCC-CCCCCCCCCC----CCcHHHHHHHHHHHHhCCCHHHHHhhhccCc
Q 030318           46 RKRLAPLSKLRISSSENNRTAVD-------VASP-LPTTSNVDGD----DGGGAVVVRRFYAGINGRDLASVEELIADDC  113 (179)
Q Consensus        46 ~~~l~~~qqi~v~~~~~~~~~~~-------v~~p-~~~t~~~~~~----~~~~~~vVrrfyeA~Na~D~dal~eLfApD~  113 (179)
                      .|+||.+|||||+||.|++||||       |+|| |+||++++|.    .|..+.+|++|++++|++|++++.+||++|+
T Consensus       142 I~~Ldf~QQItvlR~~V~~MG~dp~~~~~~~~~~~~~~~~~~~~~~~~i~gi~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg  221 (323)
T 3mg1_A          142 IQGLESGQQITVLRNAVVDMGFTAGKDGKRIAEPVVPPQDTASRTKVSIEGVTNATVLNYMDNLNANDFDTLIELFTSDG  221 (323)
T ss_dssp             HHTSCHHHHHHHHHHHHHTCCC-------CBCCCCCCCCCGGGCCCCCBBTBCCHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred             HHcCChhhhHHHHHHHHHHcCCCCCcccccccCCccCCCCcccccccCccCcchHHHHHHHHHhcccCHHHHHHHccCCC
Confidence            39999999999999999999999       8999 9999999983    3888999999999999999999999999999


Q ss_pred             eEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEEEEEE--eCCcee
Q 030318          114 VYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESHFL--SAKVAA  173 (179)
Q Consensus       114 v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~w~le--w~~~~~  173 (179)
                      +.+ |||+.|++|+|+|++||++.++++...++-.+.+..++++.+++++..++  |-++..
T Consensus       222 ~Le-pPf~~PIvGreAI~~y~~~eaq~~~l~P~~g~~ep~e~g~~qi~vtGkVqTpwfGv~v  282 (323)
T 3mg1_A          222 ALQ-PPFQRPIVGKENVLRFFREECQNLKLIPERGVTEPAEDGFTQIKVTGKVQTPWFGGNV  282 (323)
T ss_dssp             EEE-CTTSCCEESHHHHHHHHHHHCTTCEEEEEEEEEEECGGGCEEEEEEEEEECTTTGGGC
T ss_pred             eeC-CCCCCCccCHHHHHHHHHHHhccCEEeeccCccccccCCCceEEEEEEEEcccCCccc
Confidence            999 68889999999999999999998776777777777666667766655544  444433

>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}

Probab=99.65  E-value=3e-16  Score=120.64  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=72.1

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEE
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANG  161 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~  161 (179)
                      .+.+.++|++|++|||++|++++.+||+||++|+||+++++++|++++++|++.+..+++ ++++++.++. +||  .+.
T Consensus        24 ~mt~~eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~g~~~~Greai~~~~~~~~~~~~-d~~~~v~~~~~~gd--~v~  100 (158)
T 4h3u_A           24 AMTTPEIVTAWAAAWTGTNPNALGTLFAADGTYVDHAIGATMTGREQISGWKARTDAMIE-NVHVTITKAYRAGD--HVT  100 (158)
T ss_dssp             -CCCCHHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTTTEEEESHHHHHHHHHHHHHHEE-EEEEEEEEEEEETT--EEE
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHhcccceEeccCCCceEecchhhhhhhhhhhccCC-ccceeEeEEeecCc--eEE
Confidence            366789999999999999999999999999999999998889999999999999999997 8999999864 666  555


Q ss_pred             EEEEEEe
Q 030318          162 KESHFLS  168 (179)
Q Consensus       162 v~w~lew  168 (179)
                      ++|+++.
T Consensus       101 ~~~~~~g  107 (158)
T 4h3u_A          101 IEAVYGG  107 (158)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555543

>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.59  E-value=7.4e-15  Score=107.24  Aligned_cols=83  Identities=12%  Similarity=0.017  Sum_probs=72.7

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      ++++++|++|+++||++|++++.++++||+++|+|+.+....|+++++++++.++.++| +++++++.+ .+||  .|.+
T Consensus         2 m~~~~~v~~~~~a~n~~D~~~~~~~~a~D~v~h~~~~~~~~~G~~~~~~~~~~~~~~~p-~~~~~i~~~~~~Gd--~V~~   78 (117)
T 3ff2_A            2 MSNLETAKAMIAAYNAQDVDTYVSYMTDDACEANYRGDVVREGKEGTRSGLAAAFARWP-QNHAEIKDAQQVGT--YVLM   78 (117)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTSCEEECHHHHHHHHHHHHHHHCT-TCEEEEEEEEEETT--EEEE
T ss_pred             cCHHHHHHHHHHHHcccCHHHHHHhcCCcEEEEeCCCCccccCHHHHHHHHHHHHhhCC-CceEEEEEEEEECC--EEEE
Confidence            57899999999999999999999999999999998776668999999999999999997 789999985 5676  6666


Q ss_pred             EEEEEeC
Q 030318          163 ESHFLSA  169 (179)
Q Consensus       163 ~w~lew~  169 (179)
                      +|+++..
T Consensus        79 ~~~~~~~   85 (117)
T 3ff2_A           79 REHVTRG   85 (117)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            7776653

>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.51  E-value=4.9e-14  Score=104.65  Aligned_cols=81  Identities=23%  Similarity=0.346  Sum_probs=69.6

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC---CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCce
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI---FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSA  159 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~---~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~a  159 (179)
                      ..++++|++||++||++|++++.+||+||++|++|.   .+.+++|++++++++.. +.+++ +++++++++. +||  .
T Consensus        17 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~-~~~~~-~~~~~i~~~~~~gd--~   92 (129)
T 3fh1_A           17 EQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSA-IATQP-GTRFDLEETFVAGD--R   92 (129)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHH-HHHCT-TCEEEEEEEEEETT--E
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHH-HhcCC-CceEEEeEEEEcCC--E
Confidence            468899999999999999999999999999999874   34567999999999999 88897 7899998864 565  6


Q ss_pred             EEEEEEEEe
Q 030318          160 NGKESHFLS  168 (179)
Q Consensus       160 V~v~w~lew  168 (179)
                      +.++|+++-
T Consensus        93 v~~~~~~~~  101 (129)
T 3fh1_A           93 ATIRWRYWM  101 (129)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            777887754

>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}

Probab=99.49  E-value=1.1e-13  Score=104.19  Aligned_cols=83  Identities=13%  Similarity=0.103  Sum_probs=70.9

Q ss_pred             CcHHHHHHHHHH-HHhCCCHHHHHhhhccCce-EeeCC--CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCc
Q 030318           84 GGGAVVVRRFYA-GINGRDLASVEELIADDCV-YEDLI--FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfye-A~Na~D~dal~eLfApD~v-~~dp~--~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~  158 (179)
                      ..++++|++||+ +||++|++++.++|+||++ +|+|.  ++++..|+++++++++.+..++| +++++++++. +||  
T Consensus         6 ~~~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~~~~g~~~G~~~~~~~~~~~~~~~p-d~~~~i~~~~~~gd--   82 (146)
T 3f9s_A            6 SKAKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFP-DQCFDIQGLFADGD--   82 (146)
T ss_dssp             TTHHHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTCTTTTCEECHHHHHHHHHHHHHHST-TCEEEEEEEEEETT--
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCCCCCCCcCCHHHHHHHHHHHHhhCC-CcEEEEEEEEEeCC--
Confidence            569999999996 8999999999999999999 89884  45678999999999999999997 7999999965 566  


Q ss_pred             eEEEEEEEEeC
Q 030318          159 ANGKESHFLSA  169 (179)
Q Consensus       159 aV~v~w~lew~  169 (179)
                      .|.++|+++..
T Consensus        83 ~v~~~~~~~gt   93 (146)
T 3f9s_A           83 AVVMTWLWTAT   93 (146)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            56666666543

>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9

Probab=99.49  E-value=5.1e-14  Score=103.44  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC----CCC--CCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL----IFP--RPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AED  156 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp----~~~--~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD  156 (179)
                      ..++++|++||++||++|++++.++|+||++|++|    |++  ++++|+++++++++.+.+.++ +++++++++. +||
T Consensus         3 ~~~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gd   81 (132)
T 3ebt_A            3 SNNMQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIA-EMRLAPDEFIESGE   81 (132)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEE-EEEEEEEEEEEETT
T ss_pred             chHHHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCC-ceEEEEeEEEEeCC
Confidence            35899999999999999999999999999999987    333  678999999999999999997 7899998864 666


Q ss_pred             CceEEEEEEEE
Q 030318          157 SSANGKESHFL  167 (179)
Q Consensus       157 ~~aV~v~w~le  167 (179)
                        .|.++|+.+
T Consensus        82 --~v~v~~~~~   90 (132)
T 3ebt_A           82 --RIVVLGTRR   90 (132)
T ss_dssp             --EEEEEEEEE
T ss_pred             --EEEEEEEEE
Confidence              555666654

>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}

Probab=99.49  E-value=1.2e-13  Score=107.11  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v  162 (179)
                      ..++++|++||++||++|++++.++|+||+++|+|+.+ +..|+++++++++.++.+|| +++++++++. +||  .|.+
T Consensus        34 ~~n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~g-~~~G~e~~~~~~~~~~~~~p-d~~~~i~~~~~~gd--~v~~  109 (159)
T 3k0z_A           34 TEMVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPKG-RPQGTEGLKFAAQNFRKIVP-NIHCEIEDLLVVGD--KVTA  109 (159)
T ss_dssp             HHHHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCTT-CCSSHHHHHHHHHHHHTTCC-SEEEEEEEEEEETT--EEEE
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCCC-CCCCHHHHHHHHHHHHHhCC-CcEEEEEEEEEECC--EEEE
Confidence            56899999999999999999999999999999987644 68999999999999999997 8999999964 666  5555


Q ss_pred             EEEEEe
Q 030318          163 ESHFLS  168 (179)
Q Consensus       163 ~w~lew  168 (179)
                      +|+++.
T Consensus       110 ~~~~~g  115 (159)
T 3k0z_A          110 RLSFTG  115 (159)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555543

>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}

Probab=99.47  E-value=8.5e-14  Score=104.97  Aligned_cols=84  Identities=13%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CCcHHHHHHHHHH-HHhCCC--HHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCc
Q 030318           83 DGGGAVVVRRFYA-GINGRD--LASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSS  158 (179)
Q Consensus        83 ~~~~~~vVrrfye-A~Na~D--~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~  158 (179)
                      ...++++|++||+ +||++|  ++++.++|+||+++|+++. ++..|++++++++..++.+|| +++++++++. +||  
T Consensus         8 ~~~n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~-~~~~G~~~~~~~~~~~~~~~p-d~~~~i~~~~~~gd--   83 (146)
T 3kkg_A            8 ETQNVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN-QAVEGIEQAIAFNAVLFEGFP-RLEVVVENVTVEGD--   83 (146)
T ss_dssp             C-CHHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS-CCEESHHHHHHHHHHHHHHST-TCEEEEEEEEEETT--
T ss_pred             hHHHHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC-CCCCCHHHHHHHHHHHHHhCC-CceeEEEEEEEeCC--
Confidence            3679999999999 899999  9999999999999997655 568999999999999999997 7999999965 565  


Q ss_pred             eEEEEEEEEeCC
Q 030318          159 ANGKESHFLSAK  170 (179)
Q Consensus       159 aV~v~w~lew~~  170 (179)
                      .|.++|+++..+
T Consensus        84 ~v~~~~~~~gt~   95 (146)
T 3kkg_A           84 NVVVQARLTGAQ   95 (146)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEe
Confidence            666777766544

>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9

Probab=99.46  E-value=3.3e-13  Score=102.57  Aligned_cols=79  Identities=15%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      .++++|++||++||++|++++.++|+||+++++|  +++.+|+++++++++.++.++| ++++++.++. +||  .|.++
T Consensus         5 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~--~~~~~G~~~~~~~~~~~~~~~~-~~~~~i~~~~~~gd--~v~~~   79 (152)
T 2gex_A            5 ANKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDD--EDKPVSAEEVVRRMNSAVEAFP-DLRLDVRSIVGEGD--RVMLR   79 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECT--TSCEECHHHHHHHHHHHHHHCT-TCEEEEEEEEEETT--EEEEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCC--CCCCCCHHHHHHHHHHHHHhCC-CcEEEEEEEEEeCC--EEEEE
Confidence            4789999999999999999999999999999987  4578999999999999999997 7999999864 666  55566


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |+++.
T Consensus        80 ~~~~g   84 (152)
T 2gex_A           80 ITCSA   84 (152)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66553

>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29

Probab=99.45  E-value=2.4e-13  Score=99.52  Aligned_cols=81  Identities=14%  Similarity=-0.005  Sum_probs=68.2

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v~  163 (179)
                      .+++++++||+|||++|++++.++|+||+++++++.+.+++|++++++|++.++.+ | ++++++.++ .+||  .|.++
T Consensus         4 ~~~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~g~~~~~G~~ai~~~~~~~~~~-~-~~~~~~~~~~~~gd--~v~~~   79 (123)
T 2k54_A            4 EIELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRHIERFKE-P-DLYGELLTRVIVGN--VVIDH   79 (123)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETTTEEEEESHHHHHHHHHHHTTC-T-TCEEEEEEEEEETT--EEEEE
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCCCCcccCCHHHHHHHHHHHcCC-C-CcEEEEEEEEEECC--EEEEE
Confidence            47889999999999999999999999999999876433589999999999998877 5 789999885 4565  66667


Q ss_pred             EEEEeC
Q 030318          164 SHFLSA  169 (179)
Q Consensus       164 w~lew~  169 (179)
                      |+++..
T Consensus        80 ~~~~g~   85 (123)
T 2k54_A           80 ETVTRN   85 (123)
T ss_dssp             EEEECC
T ss_pred             EEEEeE
Confidence            777653

>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*

Probab=99.45  E-value=9.4e-14  Score=106.30  Aligned_cols=84  Identities=12%  Similarity=0.045  Sum_probs=72.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v  162 (179)
                      ..++++|++||++||++|++++.++|+||+++++|+.+.++.|+++++++++.+..++|.+++++++++. +||  .|.+
T Consensus        11 ~~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~~~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~~~gd--~v~~   88 (153)
T 2f99_A           11 SEQIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLEFTSLRGPELFAINVAWVKKTFSEEARLEEVGIEERAD--WVRA   88 (153)
T ss_dssp             CHHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTTTCCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEEEETT--EEEE
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEEEeCC--EEEE
Confidence            6789999999999999999999999999999999876644689999999999999999647899999964 565  6667


Q ss_pred             EEEEEeC
Q 030318          163 ESHFLSA  169 (179)
Q Consensus       163 ~w~lew~  169 (179)
                      +|+++..
T Consensus        89 ~~~~~gt   95 (153)
T 2f99_A           89 RLVLYGR   95 (153)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7776654

>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}

Probab=99.44  E-value=8.4e-14  Score=102.45  Aligned_cols=79  Identities=15%  Similarity=0.155  Sum_probs=66.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC-------CCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCC
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-------PRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDS  157 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~-------~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~  157 (179)
                      .+++++++|+++||++|++++.+||+||++|++|+.       +++++|++++++||+.+++++| ++++++.++..+ .
T Consensus         9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~-~~~~~~~~~~~~-~   86 (122)
T 3h3h_A            9 FAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIP-DLHFEWIATLAG-V   86 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCT-TCCCEEEEEEEC-S
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCC-CcEEEEEEEEec-C
Confidence            357899999999999999999999999999998742       2578999999999999999997 789999886554 2


Q ss_pred             ceEEEEEE
Q 030318          158 SANGKESH  165 (179)
Q Consensus       158 ~aV~v~w~  165 (179)
                      ..+.++|+
T Consensus        87 ~~~~~~~~   94 (122)
T 3h3h_A           87 DSVAIHYR   94 (122)
T ss_dssp             SEEEEEEE
T ss_pred             cEEEEEEE
Confidence            45555665

>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9

Probab=99.44  E-value=8.3e-14  Score=103.95  Aligned_cols=84  Identities=15%  Similarity=0.089  Sum_probs=71.1

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      .++++|++||++||++|++.+.++|+||+++++|+.+.+..|+++++++++.+.++++.+++++++++. +||  .|.++
T Consensus         3 ~~~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gd--~v~~~   80 (144)
T 1sjw_A            3 RQTEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLEEVRIEERGP--WVKAY   80 (144)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGGGTCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEEEETT--EEEEE
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEEEeCC--EEEEE
Confidence            578999999999999999999999999999998765543489999999999999999647899999865 565  66677


Q ss_pred             EEEEeCC
Q 030318          164 SHFLSAK  170 (179)
Q Consensus       164 w~lew~~  170 (179)
                      |+++..+
T Consensus        81 ~~~~gt~   87 (144)
T 1sjw_A           81 LVLYGRH   87 (144)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            7776544

>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10

Probab=99.43  E-value=5.5e-13  Score=99.42  Aligned_cols=82  Identities=15%  Similarity=0.245  Sum_probs=68.4

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC---CCCCccCHHHHH-HHHHHHHHhcCCCeEEEEEeee-cCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI---FPRPFLGRKATL-DFFKKFSDSISSDLQFVIDDIS-AEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~---~~~Pi~Greav~-~ff~~~~~afp~dl~~~I~ev~-egD~~  158 (179)
                      ..++++|++||++++++|++++.+||+||++|++|+   ++++++|+++++ +||+.+...++ +++++++++. +||  
T Consensus        12 ~~~~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~gd--   88 (140)
T 3ec9_A           12 RTPYQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWD-GYTFKLDALHDAGD--   88 (140)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEE-EEEEEEEEEEEETT--
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHHhhCC-cceeEEEEEEEcCC--
Confidence            568999999999999999999999999999999874   335689999995 79999999996 7899999865 565  


Q ss_pred             eEEEEEEEEe
Q 030318          159 ANGKESHFLS  168 (179)
Q Consensus       159 aV~v~w~lew  168 (179)
                      .|.++|++..
T Consensus        89 ~v~v~~~~~~   98 (140)
T 3ec9_A           89 TVIGVGRYSG   98 (140)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5555555544

>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}

Probab=99.43  E-value=9.4e-13  Score=100.55  Aligned_cols=89  Identities=15%  Similarity=0.120  Sum_probs=70.0

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC---CCCccCHHHHHHHHHHHHHhcCCCeEEEE-Eee-ecCCC
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF---PRPFLGRKATLDFFKKFSDSISSDLQFVI-DDI-SAEDS  157 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~---~~Pi~Greav~~ff~~~~~afp~dl~~~I-~ev-~egD~  157 (179)
                      ...++++|++||+++|++|++++.+||+||++|++|+.   +++++|+++++++++.+...++..++++. +++ .+||.
T Consensus        19 ~~~n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~gd~   98 (148)
T 3g8z_A           19 GMNTIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKMMEVSNGTFAISRADDYMASGDW   98 (148)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHHTTTCCEEEEEEEEEEETTE
T ss_pred             CcchHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHHHHHhcCCceEEEecceEEecCCE
Confidence            36799999999999999999999999999999998753   24579999999999999999975577764 664 56764


Q ss_pred             ceEEEEEEEEeCCc
Q 030318          158 SANGKESHFLSAKV  171 (179)
Q Consensus       158 ~aV~v~w~lew~~~  171 (179)
                      +.+..+|+++..+.
T Consensus        99 v~v~~~~~~~~~G~  112 (148)
T 3g8z_A           99 VAITLEFSGQANGV  112 (148)
T ss_dssp             EEEEEEEEEEETTE
T ss_pred             EEEEEEEEEEeCCc
Confidence            44444555554443

>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}

Probab=99.42  E-value=8.9e-13  Score=104.55  Aligned_cols=84  Identities=15%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC-C-CCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI-F-PRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSAN  160 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~-~-~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV  160 (179)
                      ..++++|++||++||++|++++.+||+|||++|.|+ . +++++|+|+++++|+.+...+  +.+++++.+. +.|+..+
T Consensus        10 ~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~~~p~~~~~Greai~~~f~~~~~~~--d~~~~~e~i~v~~dG~~a   87 (156)
T 3g16_A           10 AAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPAGMYGGAFRGAAQIAHRWRTAVETL--GSYWTIDALVIDAETAEA   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBTTSTTSCEESHHHHHHHHHHHHHHH--CEEEEEEEEEEETTTTEE
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCCCCCCCCccCHHHHHHHHHHHHhhc--CceEEEEEEEEecCCCEE
Confidence            468999999999999999999999999999999765 2 557899999999999999887  4799988853 4223466


Q ss_pred             EEEEEEEeC
Q 030318          161 GKESHFLSA  169 (179)
Q Consensus       161 ~v~w~lew~  169 (179)
                      .+.|++...
T Consensus        88 v~Ewt~~~T   96 (156)
T 3g16_A           88 AIEWTHFKT   96 (156)
T ss_dssp             EEEEEEEEG
T ss_pred             EEEEEEEEe
Confidence            788887643

>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}

Probab=99.41  E-value=2.6e-13  Score=100.23  Aligned_cols=81  Identities=12%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v  162 (179)
                      ..++++|++||++||++|++.+.++++||+++++     +..|+++++++++.++.++| +++++++++. +||  .|.+
T Consensus         3 ~~~~~~v~~~~~~~~~~d~~~~~~~~a~d~~~~~-----~~~G~~~~~~~~~~~~~~~p-d~~~~i~~~~~~gd--~v~~   74 (128)
T 3ehc_A            3 QTLNDIYLAYLDSLNHQAFDELGTFVDDNVEHNG-----RPFGLSGYRDMLVKDFADIP-DLRFEAEILVSDAT--RLAA   74 (128)
T ss_dssp             CCHHHHHHHHHHHHHTTCGGGGGGTEEEEEEETT-----BCCHHHHHHHHHHHHHHHCT-TCCCCEEEEEECSS--EEEE
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHhcCcceEeCC-----CCCCHHHHHHHHHHHHhhCC-CceEEEEEEEEECC--EEEE
Confidence            3589999999999999999999999999999983     46899999999999999997 7999999965 555  7777


Q ss_pred             EEEEEeCCce
Q 030318          163 ESHFLSAKVA  172 (179)
Q Consensus       163 ~w~lew~~~~  172 (179)
                      +|+++..+..
T Consensus        75 ~~~~~gt~~g   84 (128)
T 3ehc_A           75 RLFFDCTPKS   84 (128)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEEEcC
Confidence            8887766543

>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A

Probab=99.41  E-value=1.4e-12  Score=96.91  Aligned_cols=82  Identities=20%  Similarity=0.208  Sum_probs=68.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCC-------ccCHHHHHHHHHHHHHhcCCCeEEEEEe-e--
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP-------FLGRKATLDFFKKFSDSISSDLQFVIDD-I--  152 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~P-------i~Greav~~ff~~~~~afp~dl~~~I~e-v--  152 (179)
                      ...+++++++|+++||++|++++.+||+||+++++|..+.|       ++|++++++||+.+++.+  ++++++++ .  
T Consensus         6 ~~~~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~--~~~~~~~~~~i~   83 (139)
T 2a15_A            6 QSPALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN--RLTVTCEETFPS   83 (139)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTT--TCEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhcccc--eeEEeccCceEe
Confidence            35688999999999999999999999999999998765545       799999999999999887  68888764 3  


Q ss_pred             ecCCCceEEEEEEEEe
Q 030318          153 SAEDSSANGKESHFLS  168 (179)
Q Consensus       153 ~egD~~aV~v~w~lew  168 (179)
                      ..|  ..+.++|+++.
T Consensus        84 ~~g--~~~~~~~~~~~   97 (139)
T 2a15_A           84 SSP--DEIAHILVLHS   97 (139)
T ss_dssp             SST--TEEEEEEEEEE
T ss_pred             ecC--CEEEEEEEEEE
Confidence            344  46778888764

>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20

Probab=99.41  E-value=5.8e-13  Score=100.98  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC------CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI------FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AED  156 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~------~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD  156 (179)
                      .+..+++++||+|||++|++++.+||+||++|++|+      +.++++|++++++||+.+.+.++ +.+++++++. +||
T Consensus         4 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~-~~~~~~~~~~~~gd   82 (143)
T 3dm8_A            4 HSLWRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVR-IYRYHRESVMLGID   82 (143)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEE-EEEEEEEEEEECSS
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHHHhcC-cceEEEEEEEEcCC
Confidence            457899999999999999999999999999999864      23568999999999999999996 7899999865 566


Q ss_pred             CceEEEEEEEE
Q 030318          157 SSANGKESHFL  167 (179)
Q Consensus       157 ~~aV~v~w~le  167 (179)
                      .+++..+++..
T Consensus        83 ~v~v~~~~~~~   93 (143)
T 3dm8_A           83 SAASMVRYSLT   93 (143)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEEEEE
Confidence            43434455544

>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}

Probab=99.41  E-value=4.1e-13  Score=98.13  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEEEE
Q 030318           87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKESH  165 (179)
Q Consensus        87 ~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~w~  165 (179)
                      .++|++||+|||++|++++.++++||++|+.++.+ ++.||++++++++.+...++ +++++++.+. +||  .|.+.++
T Consensus         3 ~~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~~-~~~G~~~~~~~~~~~~~~~~-~~~~~i~~~i~~Gd--~Vvv~~~   78 (112)
T 3f14_A            3 ETTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGNQ-VVKGKADVIDFCNKMLPEMK-GAVLTNDNVIQNEN--QIVIEGK   78 (112)
T ss_dssp             HHHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTTE-EEESHHHHHHHHHHHHHHHH-TSEEEEEEEEECSS--EEEEEEE
T ss_pred             hHHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCCc-cEecHHHHHHHHHHHHhhcC-CcEEEEEEEEEeCC--EEEEEEE
Confidence            47899999999999999999999999999976654 68999999999999998886 5799999965 565  6777777


Q ss_pred             EEe
Q 030318          166 FLS  168 (179)
Q Consensus       166 lew  168 (179)
                      +.+
T Consensus        79 ~~~   81 (112)
T 3f14_A           79 CRY   81 (112)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0

Probab=99.40  E-value=1.9e-13  Score=100.96  Aligned_cols=82  Identities=12%  Similarity=0.068  Sum_probs=68.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC---CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCce
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI---FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSA  159 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~---~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~a  159 (179)
                      ..++++|++||++||++|++++.+||+||++|++|+   ++++++|++++++||+.+...++ ++++++.++ .+||  .
T Consensus         5 ~~~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~gd--~   81 (135)
T 3fgy_A            5 QENVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKASEMVE-ISYPEPPEFVAQGE--R   81 (135)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHHHHHEE-EECSSCCEEEEETT--E
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHHHHhhC-cceeeeEEEEEcCC--E
Confidence            468999999999999999999999999999999875   34567999999999999999986 667787775 4565  5


Q ss_pred             EEEEEEEEe
Q 030318          160 NGKESHFLS  168 (179)
Q Consensus       160 V~v~w~lew  168 (179)
                      |.+.|+++.
T Consensus        82 v~v~~~~~~   90 (135)
T 3fgy_A           82 VLVVGFATG   90 (135)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEeE
Confidence            566666554

>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...

Probab=99.40  E-value=5.2e-13  Score=97.42  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=69.4

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceE-E
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSAN-G  161 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV-~  161 (179)
                      ...++++++|+++||++|++++.+||+||++|++|..+.+++|++++++|++.++..++ ++++++.++. +||  .+ .
T Consensus         7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~g~--~~~~   83 (131)
T 1oh0_A            7 QEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGK-VRACLTGPVRASHN--GCGA   83 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTTSCCEEHHHHHHHHHHHHHSSSC-CEEEESSCCEECSS--SEEE
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCCCCCcccHHHHHHHHHHHhhccc-eeEeecceEEECCC--eEEE
Confidence            34778999999999999999999999999999987655589999999999999999886 6888887754 454  55 6


Q ss_pred             EEEEEEe
Q 030318          162 KESHFLS  168 (179)
Q Consensus       162 v~w~lew  168 (179)
                      ++|+++.
T Consensus        84 ~~~~~~~   90 (131)
T 1oh0_A           84 MPFRVEM   90 (131)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777665

>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9

Probab=99.37  E-value=2.3e-12  Score=98.84  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=68.1

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      .++++|++||++||++|++.+.++|+||+++++|   ++..|+++++++++.++.+++ ++++++.++. +||  .|.++
T Consensus         5 ~~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p---~~~~G~~~~~~~~~~~~~~~~-~~~~~i~~~~~~gd--~v~~~   78 (158)
T 2gey_A            5 ERKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSE---DNEVSSADMVKLMEGGLKAFP-DLQLEVKSIMAEED--RVALR   78 (158)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEET---TEEECHHHHHHHHHHHHHHST-TCEEEEEEEEEETT--EEEEE
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCC---CCCCCHHHHHHHHHHHHHhCC-CcEEEEEEEEEeCC--EEEEE
Confidence            4789999999999999999999999999999994   357899999999999999997 7999999965 565  66677


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |+++.
T Consensus        79 ~~~~g   83 (158)
T 2gey_A           79 ITVTA   83 (158)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A

Probab=99.36  E-value=2.2e-12  Score=91.98  Aligned_cols=79  Identities=20%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEE-eee-cCCCceEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVID-DIS-AEDSSANGK  162 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~-ev~-egD~~aV~v  162 (179)
                      .+++++++|+++||++|++++.+||+||++|++|+.+++++|+++++++++.++..++   ++++. .+. +||  .+.+
T Consensus         6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~--~~~~   80 (125)
T 1ohp_A            6 HMTAVVQRYVAALNAGDLDGIVALFADDATVENPVGSEPRSGTAAIREFYANSLKLPL---AVELTQEVRAVAN--EAAF   80 (125)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTTSCCEESHHHHHHHHHHHTSSCC---EEEECSCCEEETT--EEEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCCCCCccCHHHHHHHHHHhcccCc---eEEEeeeEEEeCC--EEEE
Confidence            4678999999999999999999999999999987656689999999999999988775   45576 754 555  6666


Q ss_pred             EEEEEe
Q 030318          163 ESHFLS  168 (179)
Q Consensus       163 ~w~lew  168 (179)
                      +|+++.
T Consensus        81 ~~~~~~   86 (125)
T 1ohp_A           81 AFIVSF   86 (125)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777664

>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*

Probab=99.34  E-value=8e-12  Score=93.78  Aligned_cols=79  Identities=20%  Similarity=0.281  Sum_probs=66.3

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCe-EEEEEeee-cCCCceEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDL-QFVIDDIS-AEDSSANG  161 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl-~~~I~ev~-egD~~aV~  161 (179)
                      ..+++++++||++||++|++++.+||+||++|++++.+ +++|++++++|++.+...++  + ++++..+. +||  .+.
T Consensus        22 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~~-~~~G~~~i~~~~~~~~~~~~--~~~~~~~~~~~~gd--~v~   96 (149)
T 1nww_A           22 TPDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLP-PAYGRDAVEQTLAGLFTVMS--IDAVETFHIGSSNG--LVY   96 (149)
T ss_dssp             SHHHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTSC-CEESHHHHHHHHHHHHHHEE--EEEEEEEEEEEETT--EEE
T ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCCC-CccCHHHHHHHHHHHHhhCC--cceEEEEEEEecCC--EEE
Confidence            56889999999999999999999999999999997654 68999999999999999886  7 88887754 565  444


Q ss_pred             EEEEEE
Q 030318          162 KESHFL  167 (179)
Q Consensus       162 v~w~le  167 (179)
                      +.|...
T Consensus        97 ~~~~~~  102 (149)
T 1nww_A           97 TERVDV  102 (149)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455443

>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0

Probab=99.34  E-value=4.5e-13  Score=99.00  Aligned_cols=82  Identities=12%  Similarity=0.302  Sum_probs=66.9

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC---CCCCccCHHHHH-HHHHHHHHhcCCCeEEEEEee--e-cCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI---FPRPFLGRKATL-DFFKKFSDSISSDLQFVIDDI--S-AED  156 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~---~~~Pi~Greav~-~ff~~~~~afp~dl~~~I~ev--~-egD  156 (179)
                      ..++++|++||++++++|++++.+||+||++|++|+   ++++++|+++++ +||+.+..+++ +++++++++  . +||
T Consensus         4 ~~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gd   82 (134)
T 3grd_A            4 KANLEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWN-DYKASVNMYHEVSGKD   82 (134)
T ss_dssp             CCHHHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHHHHEE-EEEEEEEEEEEBTTSS
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHHhhcc-ccccchhheeeecCCC
Confidence            468999999999999999999999999999999874   335689999998 59999999997 688888875  5 455


Q ss_pred             CceEEEEEEEEe
Q 030318          157 SSANGKESHFLS  168 (179)
Q Consensus       157 ~~aV~v~w~lew  168 (179)
                        .|.++|+++.
T Consensus        83 --~v~v~~~~~~   92 (134)
T 3grd_A           83 --VIIAEGMYSG   92 (134)
T ss_dssp             --EEEEEEEEEE
T ss_pred             --EEEEEEEEee
Confidence              4445555443

>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}

Probab=99.33  E-value=2.4e-12  Score=99.33  Aligned_cols=78  Identities=17%  Similarity=0.122  Sum_probs=68.6

Q ss_pred             CcHHHHHHHHHH-HHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEE
Q 030318           84 GGGAVVVRRFYA-GINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANG  161 (179)
Q Consensus        84 ~~~~~vVrrfye-A~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~  161 (179)
                      ..++++|++||+ +||++|++++.++++||+++|+|..   ..|+++++++++.++.++| +++++++.+. +||  .|.
T Consensus        27 ~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~h~P~~---~~G~e~~~~~~~~~~~~~p-d~~~~i~~iiaeGD--~V~  100 (148)
T 3g0k_A           27 QANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSLA---EPSVEALKGFLDRVRAESP-DARQTIHRSFVDGD--HVI  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEECCSSS---CSSHHHHHHHHHHHHHHCC-SCEEEEEEEEEETT--EEE
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEEcCCCC---CCCHHHHHHHHHHHHHhCC-CceEEEEEEEEECC--EEE
Confidence            578999999999 8999999999999999999998654   3799999999999999997 7999999964 666  677


Q ss_pred             EEEEEE
Q 030318          162 KESHFL  167 (179)
Q Consensus       162 v~w~le  167 (179)
                      ++|+++
T Consensus       101 ~~~~~~  106 (148)
T 3g0k_A          101 THTHVE  106 (148)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777766

>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}

Probab=99.33  E-value=3.5e-12  Score=98.03  Aligned_cols=84  Identities=15%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      ....+++++||++++++|++++.+||+||++|++|..+.|++|++++++||..++..++   .|.++.. ..+|+..+.+
T Consensus         9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~~~~G~~~v~~~~~~~~~~~~---~f~~~~~~~~~dg~~~~~   85 (143)
T 3mso_A            9 ANAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMAHKPYAGAPVVSMILNTVLTVFE---DFAYHRQLASADGRSVVL   85 (143)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSCSSCEESHHHHHHHHHHHHHHCE---EEEEEEEEEETTSSEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCCCccCHHHHHHHHHHHHhhCC---ceEEEEEEEccCCCEEEE
Confidence            34788999999999999999999999999999998888899999999999999999986   4566554 3344567777


Q ss_pred             EEEEEeCC
Q 030318          163 ESHFLSAK  170 (179)
Q Consensus       163 ~w~lew~~  170 (179)
                      +|+++.++
T Consensus        86 ~f~~~~~g   93 (143)
T 3mso_A           86 EFSARVGE   93 (143)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            77776544

>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}

Probab=99.32  E-value=8.3e-12  Score=95.83  Aligned_cols=85  Identities=13%  Similarity=-0.001  Sum_probs=69.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCH-HHHHhhhccCceEeeCCCC--CCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCc
Q 030318           83 DGGGAVVVRRFYAGINGRDL-ASVEELIADDCVYEDLIFP--RPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSS  158 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~-dal~eLfApD~v~~dp~~~--~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~  158 (179)
                      ...+++++++|+++++++|. +++.+||+|||++++|..+  ++.+|+++++++++.+.++++ ..+++++++ ++||  
T Consensus        19 ~~~~kevv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~~~~~~~~G~eai~~~~~~~~~~~~-~~~~~i~~~~v~gd--   95 (136)
T 3hk4_A           19 GMTIAEIAKDFTELLKQGDNAGAAEKYNADDIASYEAMEGPMAVSHGKEALRQKSQWWQENHE-VHGGSVEGPYVNGD--   95 (136)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSCSTTSEEESHHHHHHHHHHHHHTEE-EEEEEEEEEEEETT--
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCCCCccccCCHHHHHHHHHHHHhcCC-eeeeeecceEEcCC--
Confidence            47899999999999999997 6789999999999997532  147999999999998888876 667899874 5676  


Q ss_pred             eEEEEEEEEeCC
Q 030318          159 ANGKESHFLSAK  170 (179)
Q Consensus       159 aV~v~w~lew~~  170 (179)
                      .+.++|+++..+
T Consensus        96 ~v~v~~~~~gth  107 (136)
T 3hk4_A           96 QFALRFKFDVTP  107 (136)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            677777776543

>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19

Probab=99.32  E-value=8.1e-12  Score=92.78  Aligned_cols=81  Identities=14%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             cHHHHHHHHHHHHhCCCHH----HHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEE-eeecCCCce
Q 030318           85 GGAVVVRRFYAGINGRDLA----SVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVID-DISAEDSSA  159 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~d----al~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~-ev~egD~~a  159 (179)
                      ..++++++|+++||+.|.+    ++.++|+||++|+||+.  +++|++++.+|+..++++++ ++++++. ++.. .+..
T Consensus         4 ~~~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~--~~~G~~ai~~~~~~~~~~~~-~~~f~~~~~~~~-~~~~   79 (121)
T 3dxo_A            4 QHLTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM--QGEGQQGIAAMIEAARQKFP-GYRFVLAGTPDG-HGNF   79 (121)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC--EEEHHHHHHHHHHHHHHHST-TCEEEEEEEEEE-ETTE
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCC--CcCCHHHHHHHHHHHHHHCC-CcEEEEccCcce-eCCE
Confidence            3678999999999999985    79999999999999875  49999999999999999997 8999998 5432 2347


Q ss_pred             EEEEEEEEeC
Q 030318          160 NGKESHFLSA  169 (179)
Q Consensus       160 V~v~w~lew~  169 (179)
                      +.++|++..+
T Consensus        80 ~~~~w~~~~~   89 (121)
T 3dxo_A           80 TRFSWRLISP   89 (121)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEeCC
Confidence            8899998754

>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}

Probab=99.31  E-value=4.3e-12  Score=93.93  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=61.7

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      +.++++|++||++||++|++++.+||+||++|+.|. +.+++|++++++|++.+...++..++..+..+ .+||  .|.+
T Consensus         8 m~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd--~v~~   84 (140)
T 3i0y_A            8 QRATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQ-GPREIGRAAFASFLQRMNDSYREQLRDIVVTANDEGT--RVGA   84 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT-SCEEESHHHHHHHHHHHHHHEEEEEEEEEEEECTTSS--EEEE
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCC-CCceEcHHHHHHHHHHHhhhcchhhhheeeeecccCC--EEEE
Confidence            568899999999999999999999999999998654 45799999999999999877642211111112 2344  6666


Q ss_pred             EEEEEe
Q 030318          163 ESHFLS  168 (179)
Q Consensus       163 ~w~lew  168 (179)
                      +|+++.
T Consensus        85 ~~~~~g   90 (140)
T 3i0y_A           85 EYVVHG   90 (140)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666643

>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10

Probab=99.29  E-value=5.4e-12  Score=94.19  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=65.7

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC----CCCCccCHHHHHHHHHHHHHhcCCCeEE--EEEee-ecCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI----FPRPFLGRKATLDFFKKFSDSISSDLQF--VIDDI-SAED  156 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~----~~~Pi~Greav~~ff~~~~~afp~dl~~--~I~ev-~egD  156 (179)
                      +.++++|++||++||++|++++.+||+||++|++|.    .+.+++|+++++++++.+.+.++ ++++  .+..+ .+||
T Consensus        10 m~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~gd   88 (150)
T 1s5a_A           10 EKACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIH-LSSFTAPTVYRSADSN   88 (150)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTHHHHEE-EEEECCCEEEEBSSSS
T ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHhhhcCC-cccceeEEEEEecCCC
Confidence            368899999999999999999999999999999862    23358999999999999999886 5666  33333 3454


Q ss_pred             CceEEEEEEEEe
Q 030318          157 SSANGKESHFLS  168 (179)
Q Consensus       157 ~~aV~v~w~lew  168 (179)
                        .+.++|+++.
T Consensus        89 --~v~~~~~~~~   98 (150)
T 1s5a_A           89 --TVIAEFQCDG   98 (150)
T ss_dssp             --EEEEEEEEEE
T ss_pred             --EEEEEEEEEE
Confidence              6677777764

>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10

Probab=99.29  E-value=5.2e-12  Score=95.67  Aligned_cols=87  Identities=14%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC--CCCccCHHHHHHHHHHHHHhcCCCeEEE-EEeee-cCCCce
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF--PRPFLGRKATLDFFKKFSDSISSDLQFV-IDDIS-AEDSSA  159 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~--~~Pi~Greav~~ff~~~~~afp~dl~~~-I~ev~-egD~~a  159 (179)
                      ...++++++|++|+++||++++.+||+||++|+.|+-  +++++|++++++|++.+...++..++++ ++.+. +|+.+.
T Consensus        12 ~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~~~~g~~~G~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~G~~vv   91 (134)
T 3dmc_A           12 KVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMGEFHGLNVGKERAKEFFTYVSESFHTGIQISSLDRVTSNETTVV   91 (134)
T ss_dssp             HHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSGGGBEEEESHHHHHHHHHHHHHTCTTCEEEEEEEEEEECSSEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCCCCCccchhHHHHHHHHHHHHHhhcCCceeEEEEEEEecCCEEE
Confidence            5667788889999999999999999999999997653  2568999999999999998887568888 88754 566334


Q ss_pred             EEEEEEEEeCC
Q 030318          160 NGKESHFLSAK  170 (179)
Q Consensus       160 V~v~w~lew~~  170 (179)
                      +..+.+++..+
T Consensus        92 ve~~~~g~~~g  102 (134)
T 3dmc_A           92 FEFRDEGLFLG  102 (134)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEEEcC
Confidence            44445566665

>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}

Probab=99.27  E-value=3.9e-12  Score=97.75  Aligned_cols=83  Identities=12%  Similarity=0.139  Sum_probs=63.3

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKE  163 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~  163 (179)
                      ..++++|++||++||++|++++.++|+||++++ ++.+++++|++++++|++.+..+|+ +....+..+...++..|.++
T Consensus        18 ~~~~~~v~~~~~a~n~~D~~~l~~l~a~D~v~~-~~~~~~~~G~e~i~~~~~~~~~~~~-~~~~~~~~~~~~~gd~v~~~   95 (150)
T 3f8h_A           18 QGMNDTIARYFDAFNAGDTDGMLACLSEDVAHH-VNEGNIRVGKEKFAAFCAHMSHCYK-EELTDMVIFATPDATRAAAE   95 (150)
T ss_dssp             ECCCCHHHHHHHHHHHTCHHHHHTTEEEEEEEE-EETTEEEESHHHHHHHHHHHHHHEE-EEEEEEEEEECTTSSEEEEE
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHcCCCeEEe-CCCCcceeCHHHHHHHHHHHHHhCC-ccccceEEEEecCCCEEEEE
Confidence            457889999999999999999999999999954 5555578999999999999999997 33333333321223466667


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |+++-
T Consensus        96 ~~~~g  100 (150)
T 3f8h_A           96 YTVNG  100 (150)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76653

>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8

Probab=99.26  E-value=1.2e-11  Score=93.49  Aligned_cols=77  Identities=21%  Similarity=0.372  Sum_probs=63.7

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v  162 (179)
                      ..++++|++||++||++|++++.+||+||++|++++.+ +++|++++++|++.+...+  +.++++.++. +||  .+.+
T Consensus        15 ~~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~~-~~~G~~~i~~~~~~~~~~~--~~~~~i~~~~~~g~--~vv~   89 (149)
T 2bng_A           15 TEAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFS-RIRGGRRTATLLRRMQGRV--GFEVKIHRIGADGA--AVLT   89 (149)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTTE-EEECHHHHHHHHHTTTTTC--EEEEEEEEEEEETT--EEEE
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCCC-CccCHHHHHHHHHHHHhhc--CcEEEEEEEEEeCC--EEEE
Confidence            46789999999999999999999999999999976654 6899999999999987766  5788888864 565  3444


Q ss_pred             EEE
Q 030318          163 ESH  165 (179)
Q Consensus       163 ~w~  165 (179)
                      .|.
T Consensus        90 ~~~   92 (149)
T 2bng_A           90 ERT   92 (149)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27

Probab=99.24  E-value=3.4e-11  Score=87.91  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=63.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCceEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSANG  161 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~--egD~~aV~  161 (179)
                      ...++++.+|+++||++|++++.+||+||++++.++.+ +++|+++++++|+.++..++.+++++++++.  .||  .+.
T Consensus        11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~~-~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~~gd--~a~   87 (135)
T 3d9r_A           11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRP-AAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSAD--WAF   87 (135)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSC-CEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETT--EEE
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCC-cccCHHHHHHHHHHHHhhcCCceeEEEEEEEEecCC--EEE
Confidence            34678999999999999999999999999999976544 6789999999999998776546788888863  465  333


Q ss_pred             EEEE
Q 030318          162 KESH  165 (179)
Q Consensus       162 v~w~  165 (179)
                      ++|+
T Consensus        88 ~~~~   91 (135)
T 3d9r_A           88 VRSA   91 (135)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11

Probab=99.24  E-value=5e-11  Score=90.74  Aligned_cols=79  Identities=20%  Similarity=0.282  Sum_probs=62.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC---CCccCHHHHHHHHHHHHHhcCC-CeEEEEEeee-cCCCce
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP---RPFLGRKATLDFFKKFSDSISS-DLQFVIDDIS-AEDSSA  159 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~---~Pi~Greav~~ff~~~~~afp~-dl~~~I~ev~-egD~~a  159 (179)
                      .++++|++||++||++|++++.+||+||++|++|+.+   ++++|++++++|++.+. +++. ++++++.++. +|| ..
T Consensus        30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~~-~~~~~~~~~~i~~~~~~gd-~~  107 (156)
T 1tuh_A           30 QNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYG-GETGGTFKAVLLHVLKSDD-GR  107 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHH-HTTTTCCEEEEEEEEECTT-SC
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHHH-hhcCCceEEEEEEEEEcCC-CE
Confidence            5789999999999999999999999999999987643   23699999999999964 5543 6899998864 555 13


Q ss_pred             EEEEEE
Q 030318          160 NGKESH  165 (179)
Q Consensus       160 V~v~w~  165 (179)
                      +.+.|+
T Consensus       108 v~~~~~  113 (156)
T 1tuh_A          108 VIGIHR  113 (156)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444444

>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}

Probab=99.23  E-value=2.9e-11  Score=92.85  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      ...+++|++||++||++|++++.+||+||++|+.| .++++.|++++++|++.+..++...++..+..+ .+||  .|.+
T Consensus        20 ~~~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p-~g~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~~~~~gd--~v~~   96 (151)
T 3f7x_A           20 MTATELVNAYYAAFNAGDMPAFLALLSEDVIHDIN-QGERQMGKARFAAFMEKMNRCYRERLADIVVMQNADGS--RAAA   96 (151)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECT-TSCEEESHHHHHHHHHHHHHHEEEEEEEEEEEECTTSS--EEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECC-CCCCcCCHHHHHHHHHHHHHhhccceeEEEEEEecCCC--EEEE
Confidence            45789999999999999999999999999999753 446799999999999999887632222222121 3454  6666


Q ss_pred             EEEEEeC
Q 030318          163 ESHFLSA  169 (179)
Q Consensus       163 ~w~lew~  169 (179)
                      +|+++..
T Consensus        97 ~~~~~gt  103 (151)
T 3f7x_A           97 EFTVHGQ  103 (151)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6666643

>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}

Probab=99.22  E-value=3.7e-11  Score=95.15  Aligned_cols=83  Identities=12%  Similarity=0.184  Sum_probs=68.8

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKE  163 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~  163 (179)
                      ..+.+++++|+++|++||++++.+||+|||++++|...+|++|++++++||......++ ++++..+ ...|+  .+.+.
T Consensus        18 ~~~~~~v~~f~~A~~~gD~~aL~~LlA~Dvv~~sP~~~~p~~Gr~av~~~l~~~~~~~~-df~~~~~-~v~G~--~avl~   93 (155)
T 3flj_A           18 QGMHPTIARMQEVVAKGDESLIHALLAEDVRFMPPTYYKTWTGRDPVAAVLGHVGQVFS-EFRYRRI-MGEGK--DWALE   93 (155)
T ss_dssp             TTCCHHHHHHHHHHTTTCHHHHHTTEEEEEEEECSSSSCCEESHHHHHHHHHHHHHHEE-EEEEEEE-EEETT--EEEEE
T ss_pred             hhHHHHHHHHHHHHHhCCHHHHHHhcCCCEEEECCCCCCCcCCHHHHHHHHHHHHhhCC-CcEEEEE-EEcCC--EEEEE
Confidence            45778999999999999999999999999999999888899999999999999999886 6655533 34555  56667


Q ss_pred             EEEEeCC
Q 030318          164 SHFLSAK  170 (179)
Q Consensus       164 w~lew~~  170 (179)
                      |+++..+
T Consensus        94 f~~~~~g  100 (155)
T 3flj_A           94 FQCKVGE  100 (155)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            7765554

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}

Probab=99.21  E-value=6.1e-11  Score=100.66  Aligned_cols=83  Identities=13%  Similarity=0.017  Sum_probs=69.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v  162 (179)
                      ...++++++|+++||++|++++.+||+||+++++|..++|++|++++++||+.++++ . . ++.+.++. ..++..+.+
T Consensus       138 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~~~~G~~ai~~~~~~~~~~-~-~-~~~~~~~~~~~~g~~aa~  214 (283)
T 3rga_A          138 ERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVGSWTRTGLEALRAHATMAVGS-N-V-RETAGLTVAGQDGRHAAV  214 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTTSCEEESHHHHHHHHHHHHHT-T-C-EEEEEEEEECTTSSEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCCCCcccCHHHHHHHHHHhhcc-C-c-EEEEeeEEecCCCCEEEE
Confidence            467889999999999999999999999999999987777899999999999999987 3 3 66666643 233457888


Q ss_pred             EEEEEeC
Q 030318          163 ESHFLSA  169 (179)
Q Consensus       163 ~w~lew~  169 (179)
                      +|+++..
T Consensus       215 ~~~~~~~  221 (283)
T 3rga_A          215 TVSATMD  221 (283)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888864

>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20

Probab=99.20  E-value=4.1e-11  Score=90.08  Aligned_cols=80  Identities=11%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCC-eEEEEEeee-cCCCceEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSD-LQFVIDDIS-AEDSSANGK  162 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~d-l~~~I~ev~-egD~~aV~v  162 (179)
                      .++++|++||++||++|++++.+||+||++++.|+.+.+++|++++++|++.+    +.. ..++++.+. +|+  .+.+
T Consensus         6 ~~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~~~~~~Gr~~~~~~~~~~----~~~~~~~~i~~~~a~G~--~vv~   79 (128)
T 3en8_A            6 KIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRMNLQALRSHH----PGKPAGFEVRRIQGEGN--LWIT   79 (128)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTTTEEEESHHHHHHHHHHT----TCSCSEEEEEEEEEETT--EEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCCCCEEECHHHHHHHHHHC----CCCCcceEEEEEEECCC--EEEE
Confidence            47899999999999999999999999999999988777899999999887654    332 237888764 555  6667


Q ss_pred             EEEEEeCC
Q 030318          163 ESHFLSAK  170 (179)
Q Consensus       163 ~w~lew~~  170 (179)
                      .+++...+
T Consensus        80 ~~~~~~~g   87 (128)
T 3en8_A           80 EYSISYNG   87 (128)
T ss_dssp             EEEEEETT
T ss_pred             EEEEecCC
Confidence            77776544

>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24

Probab=99.19  E-value=1.5e-11  Score=94.43  Aligned_cols=81  Identities=11%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             CcHHHHHHHHHHHHh-----CCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee--ecCC
Q 030318           84 GGGAVVVRRFYAGIN-----GRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI--SAED  156 (179)
Q Consensus        84 ~~~~~vVrrfyeA~N-----a~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev--~egD  156 (179)
                      +.|+++|++||++++     .+|++.+.+||+||+++ .++. .++.|++++++||+.++.+++ ++++.++..  .++ 
T Consensus         2 ~~n~~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~-~~~~-~~~~G~~ai~~F~~~~~~a~~-~~~~~~~~~v~~~~-   77 (131)
T 3er7_A            2 MMNTTTLDRYFDLFDASRTDEKAFDDLISLFSDEITF-VLNG-QEQHGIDAWKQFVRMVFTANQ-DIKHMYAGWVPSET-   77 (131)
T ss_dssp             ----CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEE-EETT-EEEESHHHHHHHHHHHHHHEE-EEEEEECCCEECSS-
T ss_pred             CcHHHHHHHHHHHHhhccCCccCHHHHHHHhCCCeEe-cCCC-CCcCChHHHHHHHHHHHhhCc-CceEEEEEEEEecC-
Confidence            458899999999986     35699999999999999 3333 368999999999999999997 788777663  333 


Q ss_pred             CceEEEEEEEEe
Q 030318          157 SSANGKESHFLS  168 (179)
Q Consensus       157 ~~aV~v~w~lew  168 (179)
                      +..+.++|++.-
T Consensus        78 gd~~~~~w~~~g   89 (131)
T 3er7_A           78 GDTMETRWAVCG   89 (131)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            235566666544

>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10

Probab=99.19  E-value=1.7e-11  Score=94.69  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC----CCCCccCHHHHHHHHHHHHHhcCCCeEEE-EEeeecCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI----FPRPFLGRKATLDFFKKFSDSISSDLQFV-IDDISAEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~----~~~Pi~Greav~~ff~~~~~afp~dl~~~-I~ev~egD~~  158 (179)
                      ..++++|++||++|+++|++++.+||+||++|++|.    ++..++|++++++|++.+...++ +. +. +......++.
T Consensus        23 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~~~~~-~~-~~~~~~~~~~~g~  100 (163)
T 1z1s_A           23 MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLT-VR-FTDVQFYETADPD  100 (163)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGGGTEE-EE-ECCCEEECCSSTT
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHHHHhCc-cc-eeeeEEEEEeCCC
Confidence            468999999999999999999999999999999863    23347999999999999988876 43 21 1111113334


Q ss_pred             eEEEEEEEEe
Q 030318          159 ANGKESHFLS  168 (179)
Q Consensus       159 aV~v~w~lew  168 (179)
                      .+.++|+++.
T Consensus       101 ~vv~~~~~~g  110 (163)
T 1z1s_A          101 LAIGEFHGDG  110 (163)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            6777777764

>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}

Probab=99.16  E-value=6.4e-11  Score=92.35  Aligned_cols=81  Identities=12%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v~  163 (179)
                      ...+++++|+++++++|++++.+||+||+++++|..+.|++|++++++||..++..++ ++  .+... ..|+..  .+.
T Consensus        21 ~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~~~~~~G~~av~~~~~~~~~~~~-~f--~~~~~~~~g~~~--~l~   95 (148)
T 3f8x_A           21 AVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPSTFDPYHGKGPLMVILPAVFSVLE-NF--QYARHFSSKSGY--VLE   95 (148)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSCSSCEESHHHHHHHHHHHHHHCE-EE--EEEEEEECSSEE--EEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCCCCCcCCHHHHHHHHHHHHhhCC-CE--EEEEEEEeCCeE--EEE
Confidence            4678999999999999999999999999999999888899999999999999999884 44  44443 345533  566


Q ss_pred             EEEEeCC
Q 030318          164 SHFLSAK  170 (179)
Q Consensus       164 w~lew~~  170 (179)
                      |+++.++
T Consensus        96 f~~~~~g  102 (148)
T 3f8x_A           96 FNANMGD  102 (148)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            6665544

>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}

Probab=99.15  E-value=2e-10  Score=82.97  Aligned_cols=83  Identities=17%  Similarity=0.108  Sum_probs=63.5

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      ...+++.+|+++||++|++++.+||+||+++.+|+ +.+++|+++++++|+.++..-...+++...++. .||...+..+
T Consensus         7 ~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~-~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~gd~A~~~~~   85 (129)
T 3hx8_A            7 AIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPD-MARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESGDFAFESGS   85 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT-SCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCC-CCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCEEEEEEE
Confidence            35789999999999999999999999999998653 446899999999999998742234566655554 5653344456


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |++..
T Consensus        86 ~~~~~   90 (129)
T 3hx8_A           86 FSLKA   90 (129)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77765

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}

Probab=99.14  E-value=9.3e-11  Score=99.51  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=66.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee---cCCCceEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS---AEDSSANG  161 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~---egD~~aV~  161 (179)
                      .++++|++|++++|++|++++.+||+||+++++|..++|++|++++++||+.+++.+.   ++++.++.   +|+  .+.
T Consensus         7 ~~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~~~~~~Gr~ai~~~~~~~~~~~~---~~~~~~~~~~~~G~--~v~   81 (283)
T 3rga_A            7 VRKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLGTEPVVGRAALAARLAPALRGAV---HEEPGRPYAAHDGT--SVV   81 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSSSCCEESHHHHHHHHHHHHHTTC---EEEECCCBCCSSSS--EEE
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCCCcCcHHHHHHHHHHHHhhcC---ceEEEEEEeeeeCC--EEE
Confidence            4788999999999999999999999999999998767789999999999999998873   56666643   444  566


Q ss_pred             EEEEEEeC
Q 030318          162 KESHFLSA  169 (179)
Q Consensus       162 v~w~lew~  169 (179)
                      ++|+++..
T Consensus        82 ~~~~~~~~   89 (283)
T 3rga_A           82 LPATVTVG   89 (283)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            66655543

>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}

Probab=99.12  E-value=3e-10  Score=83.98  Aligned_cols=78  Identities=8%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEE
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANG  161 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~  161 (179)
                      ...++++|++||+|||+||++++.+|++||++|+.|.  ++++|++++.+|+..+..      +++++.+ .+|+  .+.
T Consensus         5 ~~~~~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~--g~~~G~~~v~~~~~~~~~------~~~~~~~~~~G~--~v~   74 (114)
T 3f40_A            5 QITTRDLVLEFIHALNTENFPAAKKRLNENFTFNGPM--GHREGSERYMNDMEKMKF------KYVVHKMFEEGN--DVC   74 (114)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETT--EEEESHHHHHHHHHHHCC------EEEEEEEEEETT--EEE
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCC--CcccCHHHHHHHHHHHHh------heEEEEEEecCC--cEE
Confidence            3678999999999999999999999999999999753  368999999999987653      6777775 4555  555


Q ss_pred             EEEEEEeCC
Q 030318          162 KESHFLSAK  170 (179)
Q Consensus       162 v~w~lew~~  170 (179)
                      +.|+....+
T Consensus        75 ~~~~~~~~g   83 (114)
T 3f40_A           75 LIYDINMNG   83 (114)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEecCC
Confidence            667665544

>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}

Probab=98.98  E-value=3.4e-09  Score=80.50  Aligned_cols=73  Identities=10%  Similarity=0.081  Sum_probs=65.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAED  156 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD  156 (179)
                      |...++|++.+++++++|+|.+.++|+||.+++.|.-.+-++||+++++-|..+.+.+|++..++.-.+++|+
T Consensus         2 M~~~~iVqrlW~al~AgD~D~l~adyaeDaV~i~P~sa~vl~GR~~~r~a~~~L~~~lP~g~~It~lR~i~gg   74 (120)
T 3lyg_A            2 MNLANIVQRGWEALGAGDFDTLVTDYVEKMIFIMPGQADVLKGRQAFRSALDNLGEILPPGFEITGLRQLEGE   74 (120)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEECSSTTCEEESHHHHHHHHTTHHHHSCTTCEEEEEEEEECS
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHhcccCeEEEccCccceeecHHHHHHHHHHHHhhCCCCceeeeEEEecCC
Confidence            5678899999999999999999999999999998877778999999999999999999999888877765543

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}

Probab=98.96  E-value=5.8e-09  Score=77.75  Aligned_cols=67  Identities=19%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI  152 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev  152 (179)
                      ..+++.+|++||+++|++++.++|+||+++.+++.+..+.|+++++++|+.++..++..+++++.++
T Consensus        10 I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~~~~~~G~~air~~~~~~~~~~~~~~~~~~~~~   76 (142)
T 3f7s_A           10 IRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQALQFKGKSAYTAHWEMCMGMCTGPMVFELAQL   76 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSSSSCEESHHHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCHHHHHHHHHHHHHhCCCceEEEEeee
Confidence            5678899999999999999999999999998765554568999999999999988876788888874

>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22

Probab=98.96  E-value=6.1e-10  Score=83.61  Aligned_cols=82  Identities=11%  Similarity=0.032  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEE--Eee-ecCCCceEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVI--DDI-SAEDSSANGK  162 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I--~ev-~egD~~aV~v  162 (179)
                      ..+++.+|++|||++|++++.+||+||+++...+ +.+++|+++|+++|+.++..++...++++  ..+ ..||...+..
T Consensus         5 I~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~-g~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~gd~A~~~~   83 (142)
T 2gxf_A            5 LKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKP-GMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGDTVLVLS   83 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSS-SCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCC-CCcccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcCCEEEEEE
Confidence            5689999999999999999999999999995444 55799999999999998875543334433  333 3565334455


Q ss_pred             EEEEEe
Q 030318          163 ESHFLS  168 (179)
Q Consensus       163 ~w~lew  168 (179)
                      .|++..
T Consensus        84 ~~~~~~   89 (142)
T 2gxf_A           84 QTLLDS   89 (142)
T ss_dssp             EEECCC
T ss_pred             EEEEEE
Confidence            666543

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}

Probab=98.94  E-value=1.1e-08  Score=78.65  Aligned_cols=85  Identities=14%  Similarity=0.185  Sum_probs=66.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccC--ceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee--e-cCCC
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADD--CVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI--S-AEDS  157 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD--~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev--~-egD~  157 (179)
                      -..++++..+||+|||++|++++.++|++|  +++.+|+.+ +++|++++++.|+.++...+ .+++++.++  . .||.
T Consensus         7 ~~~~~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~-~l~G~~ai~~~w~~~f~~~~-~~~i~~~~v~v~~~gd~   84 (144)
T 3gwr_A            7 FPTPEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAA-PLNGRAAVAAGWRSMFGAAG-RFRLQVKAVHEIRQADH   84 (144)
T ss_dssp             CSSHHHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCC-CEESHHHHHHHHHHHHHHHC-CEEEEEEEEEEEECSSE
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCC-CcccHHHHHHHHHHHHcCCC-cEEEEEEEEEEEecCCE
Confidence            356999999999999999999999999999  666666544 69999999999999998764 578887774  2 3443


Q ss_pred             ceEEEEEEEEeC
Q 030318          158 SANGKESHFLSA  169 (179)
Q Consensus       158 ~aV~v~w~lew~  169 (179)
                      --+..++++...
T Consensus        85 A~v~~~e~~~~~   96 (144)
T 3gwr_A           85 VIRIVDEFLTIG   96 (144)
T ss_dssp             EEEEEEEEEEET
T ss_pred             EEEEEEEEEEec
Confidence            334446677664

>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}

Probab=98.89  E-value=1.3e-08  Score=77.58  Aligned_cols=84  Identities=15%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCceEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSANG  161 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~--egD~~aV~  161 (179)
                      ....+++.+|+++||++|++++.+||+||+++.++..+.++.|+++++++|+.++...+ ...+.++++.  .||.-.+.
T Consensus        20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~~~~~~G~~~i~~~~~~~~~~~~-~~~i~~~~i~~~~gd~A~~~   98 (156)
T 3h51_A           20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASREQIENYFEMFLTKKP-KGVINYRTVRLLDDDSAVDA   98 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSHHHHHHHHHHHGGGCC-EEEEEEEEEEECSSSEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCHHHHHHHHHHHHhhCC-CCcccceEEEEecCCeEEEE
Confidence            55778899999999999999999999999999864445568999999999999998775 3455555542  35422333


Q ss_pred             EEEEEEe
Q 030318          162 KESHFLS  168 (179)
Q Consensus       162 v~w~lew  168 (179)
                      .+|+++.
T Consensus        99 ~~~~~~~  105 (156)
T 3h51_A           99 GVYTFTL  105 (156)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4566665

>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*

Probab=98.85  E-value=3.7e-09  Score=85.93  Aligned_cols=82  Identities=13%  Similarity=-0.037  Sum_probs=65.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC----CCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL----IFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp----~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~  158 (179)
                      ..++++|++|++++++ |.+.+.+|||||++|+.|    +++..++||+++++||..+.+.|+ +.++....+. .+|..
T Consensus        41 ~~nr~vV~~yl~~~~~-D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~-d~~~~~~~v~~taDpd  118 (185)
T 3jum_A           41 QHNRKIVEQYMHTRGE-ARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFP-DWVWTDIQIFETQDPN  118 (185)
T ss_dssp             HHHHHHHHHHHHCCGG-GGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHST-TCEEEEEEEECCSSTT
T ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCC-CCeeeEEEEEEecCCC
Confidence            5788999999999877 999999999999999974    234458999999999999999997 6787765542 34455


Q ss_pred             eEEEEEEEE
Q 030318          159 ANGKESHFL  167 (179)
Q Consensus       159 aV~v~w~le  167 (179)
                      .|.+.|+++
T Consensus       119 ~VvvE~~~~  127 (185)
T 3jum_A          119 WFWVECRGE  127 (185)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            666666654

>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}

Probab=98.82  E-value=1.7e-08  Score=77.22  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v~  163 (179)
                      .-.+++.+|++|+|++|++++.+||+||++|..++  +|..|+++++++|...+..++....++++++ ..||.--+...
T Consensus        18 aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g--~~~~Gr~ai~a~~~~~~~~~~~~~~~~~~~i~v~GD~A~~~~~   95 (139)
T 3rob_A           18 AIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPG--RLPFGKEEFLAACEQNDQRVIIEASATFEEIVIVEPMAYTRTH   95 (139)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTT--SCCBCHHHHHHHHHHHHHHEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCC--CCccCHHHHHHHHHHHHHhcCCCCceEEEEEEEcCCeEEEEEE
Confidence            45678999999999999999999999999986433  3556999999999988877665677888886 46763344445


Q ss_pred             EEEEeC
Q 030318          164 SHFLSA  169 (179)
Q Consensus       164 w~lew~  169 (179)
                      |++...
T Consensus        96 ~~~~~t  101 (139)
T 3rob_A           96 LHIKVT  101 (139)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            665544

>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}

Probab=98.76  E-value=7e-09  Score=82.85  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCce---Ee-eCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCV---YE-DLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v---~~-dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~  158 (179)
                      ..|+++|++|++ +..+|.+.+.+||+||++   |+ +++++..++||+++++|+..+.+.|+ +.+|....+. .+|..
T Consensus        19 ~~Nr~vV~~~l~-~~~~D~~~~~~LfAeD~v~~~~e~~~G~P~~~~Gre~l~~~~~~~~~~~~-~~~~~~~~i~~t~Dpd   96 (163)
T 3ff0_A           19 RKNRETVVKYMN-TKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFP-DWEWYNIKVFETDDPN   96 (163)
T ss_dssp             HHHHHHHHHHHT-CCGGGGGGGGGGEEEEEEEEESSCSSSSCEEEESHHHHHHHHHHHHHHST-TCEEEEEEEEEBSSTT
T ss_pred             HHHHHHHHHHHH-HhcCCHHHHHHhcCCcccceeeEECCCCCcceecHHHHHHHHHHHHhhCC-CceeeeEEEEEcCCCC
Confidence            688999999995 457899999999999999   98 34566668999999999999999997 6777755543 45566


Q ss_pred             eEEEEEEEE
Q 030318          159 ANGKESHFL  167 (179)
Q Consensus       159 aV~v~w~le  167 (179)
                      .+.+.|+++
T Consensus        97 ~vvvE~~~~  105 (163)
T 3ff0_A           97 HFWVECDGH  105 (163)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            777777764

>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*

Probab=98.70  E-value=5.2e-08  Score=72.57  Aligned_cols=83  Identities=10%  Similarity=0.053  Sum_probs=64.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC-CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe--ee-cCCCceE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI-FPRPFLGRKATLDFFKKFSDSISSDLQFVIDD--IS-AEDSSAN  160 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~-~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e--v~-egD~~aV  160 (179)
                      ...++..+|++||+++|++++.++|+||+++-++. .+..+.|+++++++|+.++...+..+++++.+  +. .||..++
T Consensus        14 ~I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aav   93 (143)
T 2ux0_A           14 EIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAAC   93 (143)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCcEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEEE
Confidence            35678899999999999999999999999998653 23468899999999999987665567888877  33 4543454


Q ss_pred             EEEEEEE
Q 030318          161 GKESHFL  167 (179)
Q Consensus       161 ~v~w~le  167 (179)
                      ...|+++
T Consensus        94 ~~~~~~~  100 (143)
T 2ux0_A           94 IAYIRLT  100 (143)
T ss_dssp             EEEEEEE
T ss_pred             EEEeEee
Confidence            5565555

>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28

Probab=98.65  E-value=1.2e-07  Score=73.26  Aligned_cols=56  Identities=13%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHh
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDS  140 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~a  140 (179)
                      ....+++.+|+++||++|++.+.++|+||++|.+++ +.++.|+++|+++++..+..
T Consensus        16 ~aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~-g~~~~Gr~aI~~~~~~~~~~   71 (172)
T 3cu3_A           16 SAIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFE-GTHLKGRKEIAAFHQQAFDT   71 (172)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT-CCEEEHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCC-CCeEECHHHHHHHHHHHhhc
Confidence            346788999999999999999999999999999753 35799999999999999876

>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}

Probab=98.62  E-value=1.4e-07  Score=71.63  Aligned_cols=66  Identities=14%  Similarity=-0.056  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCe--EEEEEee
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDL--QFVIDDI  152 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl--~~~I~ev  152 (179)
                      ...+++.+|++|||++|++++.+||+||+++..+  +.+++|+++|+++++..+..+..+.  ++++.++
T Consensus        20 ~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~--g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i   87 (143)
T 4i4k_A           20 AVAALPARIVAAWADHDADRFADVFAEDGTMILP--GLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDA   87 (143)
T ss_dssp             HHHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEET--TEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeC--CCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEE
Confidence            4567899999999999999999999999999843  3568999999999999987662233  4444444

>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}

Probab=98.60  E-value=1.2e-07  Score=72.56  Aligned_cols=81  Identities=12%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCC--CeEEEEEeee--cCCCceEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISS--DLQFVIDDIS--AEDSSANG  161 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~--dl~~~I~ev~--egD~~aV~  161 (179)
                      -.+++.+|.+|||++|++++.+||+||++|.+.+ +.+++|+++|+++++..+..+..  .+++.+.++.  .+|.-.+.
T Consensus         8 I~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~-G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A~v~   86 (146)
T 3gzr_A            8 IQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVV-GMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSALAV   86 (146)
T ss_dssp             HHHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTT-CCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCC-CCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEEEEE
Confidence            4678999999999999999999999999998543 35789999999999998875432  3455555653  45533333


Q ss_pred             EEEEEE
Q 030318          162 KESHFL  167 (179)
Q Consensus       162 v~w~le  167 (179)
                      .+|++.
T Consensus        87 ~~~~l~   92 (146)
T 3gzr_A           87 VTLIQD   92 (146)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            456553

>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16

Probab=98.45  E-value=8e-07  Score=66.97  Aligned_cols=65  Identities=12%  Similarity=0.029  Sum_probs=54.3

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHH-HHHHHHHhcCCCeEEEEEe
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLD-FFKKFSDSISSDLQFVIDD  151 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~-ff~~~~~afp~dl~~~I~e  151 (179)
                      ....+++.+|++||+++|++++.+||+||+++.+++ + +.+|++++++ .+...+..++ .+++++.+
T Consensus        30 ~~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~-g-~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~   95 (148)
T 3bb9_A           30 SAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGG-K-VERSLTEYANHHMLADMAYLK-GLTITPKE   95 (148)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETT-E-EECSHHHHHHTHHHHHHHHHH-TEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCC-C-ccCCHHHHHHHhHHHHHHhcc-CceEEeee
Confidence            467889999999999999999999999999987554 3 3889999999 8888776554 47777766

>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12

Probab=98.41  E-value=4.7e-07  Score=68.10  Aligned_cols=72  Identities=15%  Similarity=0.088  Sum_probs=55.8

Q ss_pred             HHHHHHHHhC---C--CHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeec---CCCceEE
Q 030318           90 VRRFYAGING---R--DLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISA---EDSSANG  161 (179)
Q Consensus        90 VrrfyeA~Na---~--D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~e---gD~~aV~  161 (179)
                      ++.+++.|++   +  |++.++++|+||+++..| . +...|+++++++|+..++.+| +++++++++..   |+ ..+.
T Consensus        12 ~~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p-~-G~~~g~~~~~~~~~~~~g~~p-gl~i~i~~l~~~~~~~-d~~v   87 (128)
T 1tp6_A           12 AHVAIRDWLAGDSRADALDALMARFAEDFSMVTP-H-GVVLDKTALGELFRSKGGTRP-GLRIEIDGESLLASGV-DGAT   87 (128)
T ss_dssp             HHHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECT-T-SCEEEHHHHHHHHHHHTTCST-TCEEEEEEEEEEEEET-TEEE
T ss_pred             HHHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECC-C-CeECCHHHHHHHHHHhhCCCC-CeEEEEEEEEEEeecC-CEEE
Confidence            4556666654   4  899999999999999854 3 358899999999999999997 79999999532   33 3555


Q ss_pred             EEEE
Q 030318          162 KESH  165 (179)
Q Consensus       162 v~w~  165 (179)
                      ++|.
T Consensus        88 v~y~   91 (128)
T 1tp6_A           88 LAYR   91 (128)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25

Probab=98.36  E-value=1.8e-06  Score=66.13  Aligned_cols=77  Identities=16%  Similarity=0.081  Sum_probs=57.5

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-e-ecCCCceEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD-I-SAEDSSANGK  162 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v-~egD~~aV~v  162 (179)
                      ...+++.+|+.+++++|++.+.++|+||+++..|+  .++.|+++++++++..+.. +...|+.-.. | ..||  .+.+
T Consensus        15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g--~~~~G~~~i~~~~~~~~~~-~~~~h~~~~~~i~~~gd--~A~~   89 (170)
T 2chc_A           15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDG--WVIRGRPALREYADAHARV-VRGRHLTTDLLYEVDGD--VATG   89 (170)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETT--EEEESHHHHHHHHHHHHHH-CCCCEEEEEEEEEEETT--EEEE
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCC--CCcCCHHHHHHHHHHhhcc-cceEEecCCeEEEEeCC--EEEE
Confidence            35688999999999999999999999999998653  4688999999999998766 4334443222 2 2454  4555


Q ss_pred             EEEE
Q 030318          163 ESHF  166 (179)
Q Consensus       163 ~w~l  166 (179)
                      +|.+
T Consensus        90 ~~~~   93 (170)
T 2chc_A           90 RSAS   93 (170)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16

Probab=98.33  E-value=3.3e-06  Score=61.81  Aligned_cols=82  Identities=17%  Similarity=0.077  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhh--ccCceEeeCCCCCCccCHHHHHHHHHHHHHh-cC-CCeEEEEEeee-cCCCceE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELI--ADDCVYEDLIFPRPFLGRKATLDFFKKFSDS-IS-SDLQFVIDDIS-AEDSSAN  160 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLf--ApD~v~~dp~~~~Pi~Greav~~ff~~~~~a-fp-~dl~~~I~ev~-egD~~aV  160 (179)
                      ..+++.+|++|||++|++++.++|  +||+++-++.  +..+|++++++.++..+.. +. ..+++++.++. .++..++
T Consensus         7 I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~--~~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~a~   84 (122)
T 3b7c_A            7 IVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNG--KFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYAAM   84 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSS--CEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCC--ccccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCCCEEE
Confidence            567899999999999999999999  8999998654  3689999999988876543 11 23667666643 2332444


Q ss_pred             E-EEEEEEeC
Q 030318          161 G-KESHFLSA  169 (179)
Q Consensus       161 ~-v~w~lew~  169 (179)
                      . .+|++...
T Consensus        85 v~~~~~~~~~   94 (122)
T 3b7c_A           85 VVGRWDLKRL   94 (122)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEEEcc
Confidence            3 35776544

>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25

Probab=98.30  E-value=3.8e-06  Score=63.06  Aligned_cols=65  Identities=12%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD  151 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e  151 (179)
                      ...+++.+|..+++.+|++.+.+||+||++|..|.  ++..|+++++++++.....++...+..+..
T Consensus        11 ~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--g~~~g~~~i~~~~~~~~~~~~~~t~H~i~n   75 (144)
T 2rgq_A           11 EIMELAARFEMSLDKEDVENYLATFASDGALQGFW--GIAKGKEELRQGFYAMLDTFARGKRHCSSN   75 (144)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--EEEESHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--CCCCCHHHHHHHHHHHHhhCCCCcEEecCC
Confidence            35678889999999999999999999999998653  456899999999998876665333333443

>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17

Probab=98.29  E-value=3.3e-06  Score=67.32  Aligned_cols=82  Identities=16%  Similarity=0.184  Sum_probs=60.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCce-----------------EeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCV-----------------YEDLIFPRPFLGRKATLDFFKKFSDSISSDLQF  147 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v-----------------~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~  147 (179)
                      ...++..+||+||+++|++++.++|++|..                 +-.|+ ..++.|+++|+++|+.++.+.+ .+++
T Consensus        13 ~I~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg-~~~l~G~~~I~~~~~~~f~~~~-~~~~   90 (170)
T 3cnx_A           13 QVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPG-WPVLSGRGEVLRSYALIMANTE-YIQF   90 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTT-CCEEEHHHHHHHHHHHHHHTCS-EEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCC-CccccCHHHHHHHHHHHHccCC-eeEE
Confidence            356789999999999999999999999953                 22233 3468999999999999998764 4777


Q ss_pred             EEEee---ecCCCceEEEEEEEEe
Q 030318          148 VIDDI---SAEDSSANGKESHFLS  168 (179)
Q Consensus       148 ~I~ev---~egD~~aV~v~w~lew  168 (179)
                      ++.++   ..||.-.+...+++..
T Consensus        91 ~~~dv~v~~~gD~A~v~~~~~~~~  114 (170)
T 3cnx_A           91 FLTDVHVSVTGDTALVTCTENILS  114 (170)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEEeCCEEEEEEEEEEec
Confidence            76664   2455333334555554

>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=98.26  E-value=2.5e-06  Score=64.97  Aligned_cols=59  Identities=15%  Similarity=0.282  Sum_probs=49.3

Q ss_pred             CcHHHHHHHHHHHHhC-CCHHHHHhhhccCceEeeCCCC-CCccCHHHHHHHHHHHHHhcC
Q 030318           84 GGGAVVVRRFYAGING-RDLASVEELIADDCVYEDLIFP-RPFLGRKATLDFFKKFSDSIS  142 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na-~D~dal~eLfApD~v~~dp~~~-~Pi~Greav~~ff~~~~~afp  142 (179)
                      ....+++.+|+.++++ +|++.+.+||+||++|..++.+ .++.|+++++++++..+..++
T Consensus        28 ~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~g~~~~~G~~~i~~~~~~~~~~~~   88 (163)
T 3b8l_A           28 LAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGIGLTPQVGHAGIREFFTNVFANMS   88 (163)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGGTCCCEEHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCCCCCCccCHHHHHHHHHHhhccCC
Confidence            3466889999999999 9999999999999999854432 268999999999998876654

>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}

Probab=98.23  E-value=4.6e-06  Score=63.98  Aligned_cols=79  Identities=13%  Similarity=0.082  Sum_probs=58.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee---ecCCCceEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI---SAEDSSANG  161 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev---~egD~~aV~  161 (179)
                      ...+++.---++++++|++++.++|+||+++.||..+..+.|++++++||..+...  ...++++.+.   ..||  ...
T Consensus        15 ~~~~i~~~~~~~L~~gD~~~~~~lyapDvt~fDp~~~~~~~G~~a~r~yf~~~~~~--~~~~~ei~~p~V~v~gD--~A~   90 (134)
T 3ke7_A           15 IPEMIISLEKEALASTDPMAFVELSDTDVIYFDPSLETKIEGLEQLRTYYKGMQLP--PADHFDMIRPVVQVAQN--IAV   90 (134)
T ss_dssp             HHHHHHHHHHHHHHCSCTTHHHHHEEEEEEEECTTCSSCEESHHHHHHHHHHHCCC--CCSEEEEEEEEEEEETT--EEE
T ss_pred             HHHHHHHHhHHHHhCCCHHHHHHhcCCCEEEEcCCCccccCCHHHHHHHHHhcccC--CcceEEEeCCeEEEeCc--eEE
Confidence            34555555555889999999999999999999987666789999999999885433  2368888774   3444  444


Q ss_pred             EEEEEE
Q 030318          162 KESHFL  167 (179)
Q Consensus       162 v~w~le  167 (179)
                      ++|.++
T Consensus        91 ~~y~l~   96 (134)
T 3ke7_A           91 LTFNLD   96 (134)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            566554

>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18

Probab=98.23  E-value=5.4e-06  Score=61.09  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCce--EeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCV--YEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGK  162 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v--~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v  162 (179)
                      ..+++.+|.+||+++|++++.++|++|..  ...  .++.+.|++++++ |+..+...+...+.....+. -|+ ..+.+
T Consensus        16 i~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~--~~~~~~G~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-d~A~~   91 (129)
T 2rcd_A           16 VTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYG--AGENLYGIEEIRA-FRLARPSAGLDRALRNTVITTYGH-DMAVA   91 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEE--TTEEEESHHHHHH-HHHHSCCTTCCCEEEEEEEEEBTT-SEEEE
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEEC--CCCccCCHHHHHH-HHHhcCCCCCceEEEEEEEEEecC-cEEEE
Confidence            34455555599999999999999999953  232  2346889999999 88887665444454333333 343 33334


Q ss_pred             EEEEEeC
Q 030318          163 ESHFLSA  169 (179)
Q Consensus       163 ~w~lew~  169 (179)
                      ..++...
T Consensus        92 ~~~~~~~   98 (129)
T 2rcd_A           92 STEFTRT   98 (129)
T ss_dssp             EEEEECS
T ss_pred             EEEEEEc
Confidence            5555544

>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=98.18  E-value=3.5e-06  Score=63.05  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCc-cCHHHHHHHHHHHH
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPF-LGRKATLDFFKKFS  138 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi-~Greav~~ff~~~~  138 (179)
                      ...+++.+|..+++++|++.+.++|+||++|..++  +++ .|+++++++++...
T Consensus        20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~--g~~~~G~~~i~~~~~~~~   72 (155)
T 2rfr_A           20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVG--FATAKGRAAIAALIDGQT   72 (155)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETT--SCCEESHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCC--CccccCHHHHHHHHHhcc
Confidence            35678899999999999999999999999998764  356 89999999998774

>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}

Probab=98.11  E-value=5.3e-06  Score=64.70  Aligned_cols=57  Identities=11%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHH-HHHHHhcC
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFF-KKFSDSIS  142 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff-~~~~~afp  142 (179)
                      ...+++.+|..+++++|++.+.+||+||++|.-++.+ ++.|++++++++ +..+..++
T Consensus        32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~~g-~~~G~~~i~~~~~~~~~~~~~   89 (176)
T 3a76_A           32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEGIG-TYKGPEGALDLANNVLWPMFH   89 (176)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTTE-EEEHHHHHHHHHHHTHHHHEE
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCCCc-cccCHHHHHHHHHHhhhcccC
Confidence            4567888999999999999999999999999755533 689999999999 66665554

>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28

Probab=98.04  E-value=5.5e-06  Score=62.81  Aligned_cols=80  Identities=10%  Similarity=0.026  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCceEEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSANGKE  163 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~--egD~~aV~v~  163 (179)
                      ..+++.+|..+++.+|++.+.+||+||+++..++.. .+.|++++++++......++...|+.-...+  .|| ..+.++
T Consensus        13 I~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~~-~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gd-d~A~~~   90 (150)
T 3ef8_A           13 IERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNF-GATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSE-TEANVR   90 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETTE-EEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEET-TEEEEE
T ss_pred             HHHHHHHHHHHhcCCCHHHHHhhccCceEEEccCCC-CCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCC-CEEEEE
Confidence            467889999999999999999999999998754433 4789999999998876655433344333322  343 355555


Q ss_pred             EEEE
Q 030318          164 SHFL  167 (179)
Q Consensus       164 w~le  167 (179)
                      |.+.
T Consensus        91 ~~~~   94 (150)
T 3ef8_A           91 SVVL   94 (150)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28

Probab=97.99  E-value=6.6e-06  Score=65.16  Aligned_cols=80  Identities=15%  Similarity=0.079  Sum_probs=57.3

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC-CC------CCCccCHHHHHHHHHHHHHh---cCCCeEEEEEe-e-
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDL-IF------PRPFLGRKATLDFFKKFSDS---ISSDLQFVIDD-I-  152 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp-~~------~~Pi~Greav~~ff~~~~~a---fp~dl~~~I~e-v-  152 (179)
                      ...+++.+|..+++.+|++.+.+||+||+++.-+ ..      .++++|+++|+++++..+..   ++...|+.-.. | 
T Consensus        27 ~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~I~  106 (179)
T 3ejv_A           27 IILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPIIV  106 (179)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCEEE
Confidence            4678899999999999999999999999997632 11      13689999999999998766   44223433333 2 


Q ss_pred             ecCCCceE--EEEEEE
Q 030318          153 SAEDSSAN--GKESHF  166 (179)
Q Consensus       153 ~egD~~aV--~v~w~l  166 (179)
                      ..||  .+  .++|.+
T Consensus       107 vdgD--~A~~~~~~y~  120 (179)
T 3ejv_A          107 IEGD--HAVLDAQFMV  120 (179)
T ss_dssp             EETT--EEEEEEEEEE
T ss_pred             EcCC--eeEEEEEEEE
Confidence            2455  34  566654

>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18

Probab=97.89  E-value=6.5e-05  Score=56.54  Aligned_cols=54  Identities=7%  Similarity=0.011  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHH
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSD  139 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~  139 (179)
                      -.+++.+|++||+++|++++.+||++|..+-..+.++.+.|.++|++|...+..
T Consensus        13 I~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~g~~l~G~~~I~a~r~~~~~   66 (129)
T 2owp_A           13 VQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEVQHGGEAIRAWRERCEP   66 (129)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSSCEEESHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCCCCccCCHHHHHHHHHhcCC
Confidence            456778889999999999999999999753222335678999999996555544

>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*

Probab=97.59  E-value=0.00045  Score=53.86  Aligned_cols=73  Identities=14%  Similarity=0.311  Sum_probs=65.0

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCC
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AED  156 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD  156 (179)
                      ....++++.+|++||..+|...+..+|..|-||.|-..++...|++.|.+|+++..+.+ ....|-+++.. .|-
T Consensus        19 mP~EqqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta~~~YtG~r~Ii~Fl~RaH~gv-Ley~fnieHmfnsGs   92 (154)
T 3gzb_A           19 MPQEQQLAVKYMDALTEHDYKTLITFYNRDSIFFDKTANRKYTGGRFIIDFLERAHQGV-LEYDFNIEHMYNAGS   92 (154)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTTTEEEESHHHHHHHHHHHTTTC-CCCEEEEEEEEEETT
T ss_pred             CcHHHHHHHHHHHHHhccCHHHHHHHhCccceeeeeccCcceeCcHHHHHHHHHHhhhh-eeeccChhhhccCCc
Confidence            35677899999999999999999999999999999888888999999999999999887 47889999975 453

>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23

Probab=97.58  E-value=0.00036  Score=55.31  Aligned_cols=85  Identities=12%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      .++.+-|+.--++||.+|.+.+.-.|++|++|.+-.  +-+.|+++|.+|+.+-.+.= .+.+.. .++ +-. ...++|
T Consensus        17 EtA~~KVr~AEDaWNsrdP~rValAYT~Ds~WRNR~--eF~~GR~eI~~FLtrKW~rE-~dYrLi-KELwaf~-~nRIAV   91 (166)
T 2imj_A           17 ESAIEKIRLAEDGWNSRDPERVSLAYTLDTQWRNRA--EFAHNREEAKAFLTRKWAKE-LDYRLI-KELWAFT-DNRIAV   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETT--EEECSHHHHHHHHHHHHHHS-EEEEEE-EEEEEEE-TTEEEE
T ss_pred             HHHHHHHHHHHhhhcccChHHHhhccCCCCceeccc--cccCcHHHHHHHHHHHHHhh-ccchhh-hhhheec-CCeEEE
Confidence            567788888889999999999999999999999743  34789999999999987542 244433 443 322 259999


Q ss_pred             EEEEEeCCcee
Q 030318          163 ESHFLSAKVAA  173 (179)
Q Consensus       163 ~w~lew~~~~~  173 (179)
                      ++.-||.+...
T Consensus        92 RFaYEw~D~~g  102 (166)
T 2imj_A           92 RYAYEWHDDSG  102 (166)
T ss_dssp             EEEEEEECTTS
T ss_pred             EEEeEEecCCC
Confidence            99999988764

>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15

Probab=97.33  E-value=0.00056  Score=48.42  Aligned_cols=48  Identities=15%  Similarity=0.229  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHH
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFK  135 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~  135 (179)
                      -.++.++|++|++++|++.+.+|++||+++-.+.  +...|++++.+.++
T Consensus         8 i~~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--G~~~~~~~~i~~~~   55 (123)
T 2r4i_A            8 ILDCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--GETVTKETDIAAYS   55 (123)
T ss_dssp             HTHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--SCEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--CCCccHHHHHHHHh
Confidence            3467889999999999999999999999998764  34679987665554

>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}

Probab=97.26  E-value=0.00045  Score=52.11  Aligned_cols=80  Identities=8%  Similarity=0.029  Sum_probs=56.2

Q ss_pred             cHHHHHHHHHHHHhCCCHHHH-HhhhccCceEeeCC---CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCc
Q 030318           85 GGAVVVRRFYAGINGRDLASV-EELIADDCVYEDLI---FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSS  158 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal-~eLfApD~v~~dp~---~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~--egD~~  158 (179)
                      ...+++.+|..++..+|++.+ .+||+||+++.-.+   ......|++++.+++...+..++...|+.-..++  .||  
T Consensus        12 ~I~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~t~H~~~n~~I~vdgD--   89 (159)
T 4gb5_A           12 EIIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAITGHVVTIDSD--   89 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHHCCCCEEECHHHHHHHHHHHHTTCSEEEEEEEEEEEEEETT--
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCCCCcccccHHHHHHHHHHHhccCCceEEEecCCceEEEcCC--
Confidence            456889999999999998765 68999999986322   2234679999999999988877644444444333  454  


Q ss_pred             eEEEEEEE
Q 030318          159 ANGKESHF  166 (179)
Q Consensus       159 aV~v~w~l  166 (179)
                      ....++.+
T Consensus        90 ~A~~~~~~   97 (159)
T 4gb5_A           90 RATIHAHV   97 (159)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44455443

>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7

Probab=97.24  E-value=0.00044  Score=52.93  Aligned_cols=74  Identities=9%  Similarity=0.031  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC-CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee---ecCCCceEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLI-FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI---SAEDSSANG  161 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~-~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev---~egD~~aV~  161 (179)
                      ..+++.+|.+|++++|++++.+|++||+++-+|. .+.-+.|.+.++.||...  .. ..+++++.++   ..|+..++.
T Consensus        14 I~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~~~~g~~~~r~~f~~~--~~-~~~~~~~~~~~V~~~g~d~Av~   90 (143)
T 2f86_B           14 IVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRFYFDGN--RK-NQVHTTMLNPNVHIIGEDAACV   90 (143)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCCEETTHHHHTTSSSC--SC-CSCEEEEEEEEEEEETTTEEEE
T ss_pred             HHHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCccccCHHHHHHHHhcc--cC-CcceeEEEcceEEEeCCCEEEE
Confidence            4578899999999999999999999999998762 344588999888554321  12 2456776662   245335554


Q ss_pred             E
Q 030318          162 K  162 (179)
Q Consensus       162 v  162 (179)
                      .
T Consensus        91 ~   91 (143)
T 2f86_B           91 A   91 (143)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0

Probab=97.08  E-value=0.0019  Score=47.58  Aligned_cols=51  Identities=24%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHH
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFK  135 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~  135 (179)
                      ...-.++.++|++|++++|++++.+|++||+++-.+. + ...+++++.+.++
T Consensus        13 ~~~I~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~-G-~~~~~~~~l~~~~   63 (134)
T 3fsd_A           13 ADDIAFYEERLRAAMLTGDLKGLETLLADDLAFVDHT-G-CVKTKQTHLEPYR   63 (134)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT-S-CEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC-C-cCccHHHHHHHHH
Confidence            3568899999999999999999999999999987643 3 4667776655544

>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14

Probab=96.93  E-value=0.0024  Score=46.85  Aligned_cols=79  Identities=11%  Similarity=0.121  Sum_probs=51.2

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhc--CCCeEEEEEee-ecCCCceEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSI--SSDLQFVIDDI-SAEDSSANG  161 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~af--p~dl~~~I~ev-~egD~~aV~  161 (179)
                      ...+++.+|+++++.+|.+.+.++|+||+.+......+++.+ ..+.+|+..+...|  .+..+..+..+ ..||  ...
T Consensus        13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~gd--~A~   89 (128)
T 3blz_A           13 AIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTG-GPIQGLFDVIDNVFHPSPEAKAAIARIDIVGT--AAS   89 (128)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEE-EETHHHHHHHHHTCCCCTTCEEEEEEEEEETT--EEE
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcEEe-cCHHHHHHHHHhcCCCCccccCeEEEEEEECC--EEE
Confidence            467899999999999999999999999999864321223222 23566666665553  12334446665 3565  444


Q ss_pred             EEEEE
Q 030318          162 KESHF  166 (179)
Q Consensus       162 v~w~l  166 (179)
                      +++.+
T Consensus        90 a~~~~   94 (128)
T 3blz_A           90 ARIDT   94 (128)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            45555

>3ecf_A NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Anabaena variabilis atcc 29413} SCOP: d.17.4.21

Probab=96.73  E-value=0.0032  Score=47.79  Aligned_cols=83  Identities=10%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eecCCCceEEEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISAEDSSANGKES  164 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~egD~~aV~v~w  164 (179)
                      ..++|..|+.+|..+|+..+-  |++|+.|..|--..++.|++.+..|+........   .+.+.+ +++++  .+.-.|
T Consensus         7 ~v~iieqYl~aF~TgdfS~Vq--Fs~~~~F~sPir~~~l~G~~tV~gFlt~V~trVa---~V~i~~hiVeyp--~as~vf   79 (130)
T 3ecf_A            7 YHEILKKYFLSFETGDFSQVQ--FSCNLEFLSPISGNTLKGTEEVIPFLKGVTTRVA---EVNIMSTTVEYP--RASGVW   79 (130)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSC--EEEEEEECCTTCSSCEESHHHHHHHHHHHHTTEE---EEEEEEEEEETT--EEEEEE
T ss_pred             HHHHHHHHHHHHhcCCeeecc--cccCcEEecCccCCCccCchhHHHHHhhhhhhhh---eeeeeEEEeccC--ccceeE
Confidence            457899999999999998764  9999999977445589999999999999875543   455555 55665  788889


Q ss_pred             EEEeCCceeee
Q 030318          165 HFLSAKVAAFI  175 (179)
Q Consensus       165 ~lew~~~~~~~  175 (179)
                      .|+..+-.-|+
T Consensus        80 ~m~TtkG~~~~   90 (130)
T 3ecf_A           80 QMRTTKGTLYT   90 (130)
T ss_dssp             EEEETTSCEEE
T ss_pred             EEEeccceEEE
Confidence            99887665544

>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}

Probab=96.69  E-value=0.0012  Score=50.05  Aligned_cols=48  Identities=13%  Similarity=0.024  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccC--ceEeeCCCCCCccCHHHHHHHHH
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADD--CVYEDLIFPRPFLGRKATLDFFK  135 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD--~v~~dp~~~~Pi~Greav~~ff~  135 (179)
                      ..++..+|++||+++|++++.+||++|  +++-.|. + ..+|++++++.|.
T Consensus        12 i~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~-g-~~~G~~~i~~~~~   61 (145)
T 3soy_A           12 ITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPR-G-HERGWSQIAENFY   61 (145)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETT-E-EEESHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCC-C-cccCHHHHHHHHH
Confidence            567889999999999999999999876  5664443 2 4789999987774

>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0

Probab=95.89  E-value=0.031  Score=41.28  Aligned_cols=86  Identities=10%  Similarity=0.071  Sum_probs=52.3

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCC-cc--CHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP-FL--GRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSAN  160 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~P-i~--Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV  160 (179)
                      .-.+++.+|++++.++|.+.+.++|+||+.+.... .++ +.  ..+++.++...- ...+ ..+..|..+. .||  ..
T Consensus        13 aI~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~-~G~~l~~~~~~e~~~~v~~~-~p~~-~~~~~I~~I~i~gd--~A   87 (125)
T 3duk_A           13 GITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV-GDKLAFNGPIKDLYDWHNSN-GPAK-NVQSRITNIDIVGT--VA   87 (125)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE-TTEEEEEEETHHHHHHHHHH-CCCT-TCEEEEEEEEEETT--EE
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc-CCCEEeeCCHHHHHHHHhcc-CCCC-cccceEEEEEEECC--EE
Confidence            35678999999999999999999999999986321 223 22  224444443322 2233 4566776653 555  44


Q ss_pred             EEEEEEE-eCCceeeee
Q 030318          161 GKESHFL-SAKVAAFIN  176 (179)
Q Consensus       161 ~v~w~le-w~~~~~~~~  176 (179)
                      .++..++ +.+ ..|++
T Consensus        88 ~a~v~~~~~~~-~~f~D  103 (125)
T 3duk_A           88 HARVEAENWTN-FKFSD  103 (125)
T ss_dssp             EEEEEEECSSS-CCEEE
T ss_pred             EEEEEEEEcCC-CeEEE
Confidence            4444444 443 24443

>2gbw_B Biphenyl 2,3-dioxygenase beta subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_B* 2ckf_B

Probab=95.46  E-value=0.074  Score=41.17  Aligned_cols=56  Identities=9%  Similarity=-0.059  Sum_probs=42.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHH-hhhccCceEeeCCCCC--------C---------ccCHHHHHHHHHHHHHh
Q 030318           85 GGAVVVRRFYAGINGRDLASVE-ELIADDCVYEDLIFPR--------P---------FLGRKATLDFFKKFSDS  140 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~-eLfApD~v~~dp~~~~--------P---------i~Greav~~ff~~~~~a  140 (179)
                      ...+++-+|..+++.+|++... +||+||++|.-|..+.        .         ..|++.++.....+...
T Consensus        15 ~I~~~l~rya~~lD~~d~d~w~~~lfteD~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~   88 (174)
T 2gbw_B           15 DIEAHYRAEVRMFQTGQYREWLQGMVAEDIHYWMPIYEQRLTRDRRPDPTPDDAAIYNDDFGELKQRVERLYSG   88 (174)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTEEEEEEEEEECCCCCCTTCCCCCCCTTSCEEEEECHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHhccccHHHHHHhhccCCEEEEeeccccccccccccCCCcccceeEcCCHHHHHHHHHHHhcC
Confidence            3456677777789999999999 9999999997544321        0         24788888888877654

>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4

Probab=94.87  E-value=0.04  Score=42.28  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC-----CC-----ccCHHHHHHHHHHHHH
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP-----RP-----FLGRKATLDFFKKFSD  139 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~-----~P-----i~Greav~~ff~~~~~  139 (179)
                      ..+++-+|-.++..+|++...+||+|||+|.-|+..     .|     ..|++.++.....+..
T Consensus        16 I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~   79 (163)
T 3eby_A           16 IDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRK   79 (163)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHhhcCCEEEEeeccccCCCCCCcEEEEcCCHHHHHHHHHHhhc
Confidence            456677777789999999999999999999754321     11     1588888887777654

>1uli_B Biphenyl dioxygenase small subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 1ulj_B* 3en1_B* 3eqq_B

Probab=94.84  E-value=0.21  Score=39.31  Aligned_cols=56  Identities=14%  Similarity=-0.017  Sum_probs=40.5

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCC-------------C-----ccCHHHHHHHHHHHHHh
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPR-------------P-----FLGRKATLDFFKKFSDS  140 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~-------------P-----i~Greav~~ff~~~~~a  140 (179)
                      ...+++-+|-.+++.+|++...+||+|||+|.-|....             +     ..|++.++.....+...
T Consensus        25 eI~~~l~r~A~lLD~~d~d~w~~lfteD~~y~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~Rv~rl~~~   98 (187)
T 1uli_B           25 EIEQFYYWEAKLLNDRRFQEWFDLLAEDIHYFMPIRTTRIMRETAQEYSGAREYAHFDDNAQMMRGRLRKITSD   98 (187)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEEEECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHcccCEEEEeeccccccccccccccCCccceeeecCCHHHHHHHHHHHhcc
Confidence            34556666667899999999999999999997554321             0     14777888777776543

>2b1x_B Naphthalene dioxygenase small subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 2b24_B

Probab=94.60  E-value=0.14  Score=39.27  Aligned_cols=55  Identities=7%  Similarity=-0.155  Sum_probs=41.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCC--------C-------ccCHHHHHHHHHHHHH
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPR--------P-------FLGRKATLDFFKKFSD  139 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~--------P-------i~Greav~~ff~~~~~  139 (179)
                      ...+++-+|..+++.+|++...+||+||++|.-|..+.        +       ..|++.++.....+..
T Consensus        14 ~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~d~~~~~~~~~~~~~~l~~rv~~l~~   83 (172)
T 2b1x_B           14 EITEWLYMEAELLDAGKYREWLALVTEDLSYVVPIRVTREREAVTDVVEGMTHMDDDADSMEMRVLRLET   83 (172)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEEEECCCCTTSSCCEEEEEEEEEECHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHhccCCEEEEEEeecccccccccCCCcccEEEeCCHHHHHHHHHHHhc
Confidence            35667777778899999999999999999997543221        0       1388999887776653

>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}

Probab=94.44  E-value=0.16  Score=37.08  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHH--hcC-CCeEEEEEeee-cCCCceEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSD--SIS-SDLQFVIDDIS-AEDSSANG  161 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~--afp-~dl~~~I~ev~-egD~~aV~  161 (179)
                      -.+++.+|++++..+|.+.+.+.|+||+.+.... .+++... .+.+|+. +..  +.. ...+.+|..+. .||  ...
T Consensus        11 I~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~~~~-~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~gd--~A~   85 (120)
T 3fka_A           11 LTALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGELLWN-SRDAFIA-MCEDAADAETDPFWAISSVSVQGD--IAM   85 (120)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEEEEE-EHHHHHH-HHHHHCCSSCCCCEEEEEEEEETT--EEE
T ss_pred             HHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcEEEc-CHHHHHh-hcCCccCCCCCceEEEEEEEEECC--EEE
Confidence            5678999999999999999999999999986322 2222211 2445555 432  111 12345566653 454  444


Q ss_pred             EEEEEEeCCceeeee
Q 030318          162 KESHFLSAKVAAFIN  176 (179)
Q Consensus       162 v~w~lew~~~~~~~~  176 (179)
                      ++..+.|.+ ..|++
T Consensus        86 a~v~~~~~~-~~f~D   99 (120)
T 3fka_A           86 LHVENDWAG-MRFDD   99 (120)
T ss_dssp             EEEEEEETT-EEEEE
T ss_pred             EEEEEEcCC-CceEE
Confidence            555566654 23443

>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}

Probab=94.25  E-value=0.15  Score=37.64  Aligned_cols=84  Identities=11%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee----ecCCCc
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI----SAEDSS  158 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev----~egD~~  158 (179)
                      +...++-|+.||..++. |.+.|..+|.++..+-.. -+.++.|+++|.+.+..+-  +. +.+..|..+    ..+++.
T Consensus         4 ~~vg~~Fv~~YY~~ld~-~r~~L~~~Y~~~s~~~~~-~~~~~~G~~~I~~~l~~Lp--f~-~~~~~I~t~D~Qp~~~~gi   78 (120)
T 3ujm_A            4 MSVGREFVRQYYTLLNK-APNHLHRFYNHNSSYIHG-ESKLVVGQREIHNRIQQLN--FN-DCHAKISQVDAQATLGNGV   78 (120)
T ss_dssp             CCHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEET-TCCCEESHHHHHHHHHHHC--CC-SCEEEEEEEEEEEEGGGEE
T ss_pred             HHHHHHHHHHHHHHHhc-CHHHHhhhecccceEEEc-CCcEecCHHHHHHHHHcCC--Cc-ceEEEEecccceEcCCCCE
Confidence            35678899999999984 788899999999754322 1346899999999998762  32 566666443    234456


Q ss_pred             eEEEEEEEEeCCc
Q 030318          159 ANGKESHFLSAKV  171 (179)
Q Consensus       159 aV~v~w~lew~~~  171 (179)
                      -|.|...+..++.
T Consensus        79 li~V~G~l~~~~~   91 (120)
T 3ujm_A           79 VVQVTGELSNDGQ   91 (120)
T ss_dssp             EEEEEEEEESTTC
T ss_pred             EEEEEEEEEeCCC
Confidence            6677777776664

>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A

Probab=93.69  E-value=0.15  Score=39.16  Aligned_cols=85  Identities=13%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC-------------CCCccCHHHHHHHHHHHHHhcCCCeEEEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-------------PRPFLGRKATLDFFKKFSDSISSDLQFVID  150 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~-------------~~Pi~Greav~~ff~~~~~afp~dl~~~I~  150 (179)
                      ....+.|+.||..++. |-+.|..+|.++..+.....             +..+.|+++|.+++..+...|. +.++.|.
T Consensus        13 ~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~-~~~h~I~   90 (154)
T 2qiy_A           13 DICFAFLQNYYERMRT-DPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVR-SLKLKLD   90 (154)
T ss_dssp             HHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHT-TEEEEEE
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCC-ceEEEEE
Confidence            5678889999999987 78899999999987743321             3468899999999998843343 4566665


Q ss_pred             ee----e-cC-CCceEEEEEEEEeCC
Q 030318          151 DI----S-AE-DSSANGKESHFLSAK  170 (179)
Q Consensus       151 ev----~-eg-D~~aV~v~w~lew~~  170 (179)
                      .+    . .+ ++.-|.|...+...+
T Consensus        91 s~D~q~~~~~~~~ilI~V~G~~~~~~  116 (154)
T 2qiy_A           91 TIDFQYTGHLHKSILIMATGEMFWTG  116 (154)
T ss_dssp             EEEEEEESGGGCEEEEEEEEEEEETT
T ss_pred             EEEEEEccCCCCEEEEEEEEEEEECC
Confidence            53    2 21 445566666666544

>1wql_B Ethylbenzene dioxygenase small subunit; biphenyl dioxygenase, cumene dioxygenase; 2.20A {Pseudomonas fluorescens} SCOP: d.17.4.4

Probab=93.34  E-value=0.68  Score=36.28  Aligned_cols=55  Identities=11%  Similarity=-0.073  Sum_probs=39.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC-----C------CCc-------cCHHHHHHHHHHHHH
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-----P------RPF-------LGRKATLDFFKKFSD  139 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~-----~------~Pi-------~Greav~~ff~~~~~  139 (179)
                      ...+++-+|-.+++.+|++...+||+|||+|.-|..     +      .|.       .|++.++.-...+..
T Consensus        24 eI~~~l~r~A~lLD~~d~~~w~~lfteD~~y~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~Rv~rl~~   96 (186)
T 1wql_B           24 AVEQFYYREAQLLDYQNYEAWLALLTQDIQYWMPIRTTHTSRNKAMEYVPPGGNAHFDETYESMRARIRARVS   96 (186)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTBCTTCCEEEECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCcCHHHHHHHhhCCEEEEeeccccccccccccccCCccceEEEeCCHHHHHHHHHHHhc
Confidence            445566666678999999999999999999975543     1      122       466777766665543

>3ksp_A Calcium/calmodulin-dependent kinase II associatio; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}

Probab=93.16  E-value=0.13  Score=38.71  Aligned_cols=46  Identities=13%  Similarity=0.088  Sum_probs=38.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHH
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLD  132 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~  132 (179)
                      .-.++.+++++|+-++|.++|.+|++||.++-.+. + -...|+.+.+
T Consensus        10 ~~~~le~~~~~A~~~~D~~~L~~LL~ddf~~v~~s-G-~~~~K~~~L~   55 (129)
T 3ksp_A           10 QLQTLLSERHAYLMEGNREAMHQLLSSDFSFIDGQ-G-RQFDAETYLD   55 (129)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT-C-CEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC-C-CCcCHHHHHH
Confidence            34678889999999999999999999999998543 3 3679987666

>3e99_A Benzoate 1,2-dioxygenase beta subunit; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Burkholderia mallei atcc 23344} SCOP: d.17.4.4

Probab=92.45  E-value=0.87  Score=35.22  Aligned_cols=53  Identities=11%  Similarity=0.075  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC-------CC--------ccCHHHHHHHHHHHH
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP-------RP--------FLGRKATLDFFKKFS  138 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~-------~P--------i~Greav~~ff~~~~  138 (179)
                      ..+++-+|-.+++.+|++...+||+|||.|.-|...       .|        ..+++.++.-..++.
T Consensus        10 i~~~l~~~a~~lD~~~~~~w~~lf~~D~~Y~~p~~~~~~~~~~d~~~~~~~i~~~~~~~L~~RV~rl~   77 (164)
T 3e99_A           10 IQAFLYRESRLLDDKAWDAWLDCYRADAVFWMPSWDDADALVTDPQREISLIYYPNRQGLEDRVFRIK   77 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEECCCC-----------CEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHhcCCCEEEEEeccccccccccCCCCcceEEEcCCHHHHHHHHHHHh
Confidence            456677777789999999999999999999866542       12        256777765555553

>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2

Probab=92.15  E-value=0.45  Score=35.48  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCC-CeEEEEEee----ecCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISS-DLQFVIDDI----SAEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~-dl~~~I~ev----~egD~~  158 (179)
                      ....+.|+.||..|+. |.+.|..+|.++..+...  +..+.|+++|.+.+..+    |. +.++.|..+    ..+++.
T Consensus        13 ~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~ls~~--g~~~~G~~~I~~~l~~L----p~~~~~h~i~t~D~qp~~~~gi   85 (129)
T 1zo2_A           13 QIGKQFVQHYYQTFQT-NRPALGGLYGPQSMLTWE--DTQFQGQANIVNKFNSL----NFQRVQFEITRVDCQPSPNNGS   85 (129)
T ss_dssp             HHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEET--TEEEESHHHHHHHHHHH----CCSCEEEEEEEEEEEECTBSSE
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHhhCCCcEEEEC--CceeccHHHHHHHHHhC----CCcceEEEEEEEEEEEeCCCcE
Confidence            5677889999999987 688999999999888744  34689999999998875    32 356666553    233456


Q ss_pred             eEEEEEEEEeCCc
Q 030318          159 ANGKESHFLSAKV  171 (179)
Q Consensus       159 aV~v~w~lew~~~  171 (179)
                      .|.|...+..++.
T Consensus        86 lI~V~G~~~~~~~   98 (129)
T 1zo2_A           86 IVFVTGDVRIDDG   98 (129)
T ss_dssp             EEEEEEEEEETTC
T ss_pred             EEEEEEEEEECCC
Confidence            6777777766553

>1idp_A Scytalone dehydratase; lyase, melanine biosynthesis; 1.45A {Magnaporthe grisea} SCOP: d.17.4.1 PDB: 2std_A* 1std_A* 3std_A* 6std_A* 4std_A* 5std_A* 7std_A*

Probab=91.81  E-value=0.069  Score=42.26  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=40.8

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCC---CccCHHHHHHHHHH
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPR---PFLGRKATLDFFKK  136 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~---Pi~Greav~~ff~~  136 (179)
                      ...+++.-+|..++..+|++.+.++|+||++..=..+.+   ...|++++.++++.
T Consensus        17 ~~I~~l~~rY~Ra~DtkDwd~lr~~fapd~~~Dy~~~~~~~~~~~~~d~~v~~~~~   72 (172)
T 1idp_A           17 LGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSS   72 (172)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECHHHHSCEEEEEEHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHhCCCEEEEcccccCcccccCCHHHHHHHHhh
Confidence            346778889999999999999999999999875111111   24578988888885

>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A

Probab=90.86  E-value=0.51  Score=35.07  Aligned_cols=80  Identities=11%  Similarity=0.192  Sum_probs=57.8

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCC-CeEEEEEee----ecCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISS-DLQFVIDDI----SAEDSS  158 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~-dl~~~I~ev----~egD~~  158 (179)
                      ...++.|+.||..++. |.+.|..+|.++..+...  +..+.|+++|.+.+..+    |. +.++.|..+    ..+++.
T Consensus         9 ~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~ls~~--g~~~~G~~~I~~~l~~L----p~~~~~h~i~t~d~qp~~~~~i   81 (127)
T 1gy6_A            9 QIGSSFIQHYYQLFDN-DRTQLGAIYIDASCLTWE--GQQFQGKAAIVEKLSSL----PFQKIQHSITAQDHQPTPDSCI   81 (127)
T ss_dssp             HHHHHHHHHHHHHHHH-HGGGGGGGEEEEEEEEET--TEEEESHHHHHHHHHHC----SCSCEEEEEEEEEEEECTTSCE
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHhhCCCcEEEEC--CccccCHHHHHHHHHhC----CCcceEEEEEEEEEEEeCCCcE
Confidence            4567889999999987 688899999999888654  34689999999988764    43 366676553    233456


Q ss_pred             eEEEEEEEEeCC
Q 030318          159 ANGKESHFLSAK  170 (179)
Q Consensus       159 aV~v~w~lew~~  170 (179)
                      .|.|...+...+
T Consensus        82 li~V~G~~~~~~   93 (127)
T 1gy6_A           82 ISMVVGQLKADE   93 (127)
T ss_dssp             EEEEEEEEEETT
T ss_pred             EEEEEEEEEECC
Confidence            666666666554

>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}

Probab=90.55  E-value=0.73  Score=35.71  Aligned_cols=80  Identities=10%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee----ec-----
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI----SA-----  154 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev----~e-----  154 (179)
                      ....+.|+.||..++. |-+.|..+|.++..+...  +.++.|+++|.+++..+    | ..+..|..+    ..     
T Consensus        35 ~vg~~FV~qYY~~~d~-~R~~L~~fY~d~S~ls~~--g~~~~G~~~I~~~l~~L----p-~~~h~I~s~D~qp~~~~~~~  106 (154)
T 3nv0_B           35 NESKKFMDVYYDVMDR-KREKIGFLYTQVSNAVWN--GNPINGYDSICEFMKAL----P-STQHDIQSLDAQRLPEGVTG  106 (154)
T ss_dssp             HHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEET--TEEEESHHHHHHHHHHS----C-CEEEEEEEEEEEECCTTCCG
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHHhcCCcEEEEC--CeecccHHHHHHHHHhC----C-CeEEEEEEEEEEEcCccccC
Confidence            4567889999999987 888999999999888643  34689999999988754    4 356666442    22     


Q ss_pred             --CCCceEEEEEEEEeCCc
Q 030318          155 --EDSSANGKESHFLSAKV  171 (179)
Q Consensus       155 --gD~~aV~v~w~lew~~~  171 (179)
                        +++.-|.|...+...+.
T Consensus       107 q~~~~ilI~V~G~l~~~~~  125 (154)
T 3nv0_B          107 DMSGGMLLNVAGAVTVDGD  125 (154)
T ss_dssp             GGTTCEEEEEEEEEEETTS
T ss_pred             CCCCeEEEEEEEEEEECCC
Confidence              23466777777777665

>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A

Probab=89.98  E-value=0.76  Score=33.99  Aligned_cols=80  Identities=10%  Similarity=0.110  Sum_probs=57.6

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCC-CeEEEEEee----e-cCCCc
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISS-DLQFVIDDI----S-AEDSS  158 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~-dl~~~I~ev----~-egD~~  158 (179)
                      ...+.|+.||..++. |.+.|..+|.++..+...  +....|+++|.+.+..+    |. +.+..|..+    . .+++.
T Consensus         8 v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~~s~~--g~~~~G~~~I~~~l~~L----p~~~~~h~i~t~D~qp~~~~~gi   80 (125)
T 1gy7_A            8 LAQNFTQFYYNQFDT-DRSQLGNLYRNESMLTFE--TSQLQGAKDIVEKLVSL----PFQKVQHRITTLDAQPASPYGDV   80 (125)
T ss_dssp             HHHHHHHHHHHHHHH-HGGGGGGGEEEEEEEEET--TEEEESHHHHHHHHHHS----CCSCEEEEEEEEEEEESSTTSCE
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHhhCCCcEEEEC--CcEecCHHHHHHHHHhC----CCcceEEEEEEEEEEEecCCCeE
Confidence            457789999999977 688899999999887643  34689999999988754    32 566776553    1 22456


Q ss_pred             eEEEEEEEEeCCc
Q 030318          159 ANGKESHFLSAKV  171 (179)
Q Consensus       159 aV~v~w~lew~~~  171 (179)
                      -|.|...+..+++
T Consensus        81 li~V~G~~~~~~~   93 (125)
T 1gy7_A           81 LVMITGDLLIDEE   93 (125)
T ss_dssp             EEEEEEEEEETTC
T ss_pred             EEEEEEEEEECCC
Confidence            6677777766654

>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A

Probab=89.34  E-value=0.98  Score=33.98  Aligned_cols=51  Identities=12%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHH
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF  137 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~  137 (179)
                      ....+.|+.||..++. |-+.|..+|.++..+...  +.++.|+++|.+++..+
T Consensus        15 ~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~ls~~--g~~~~G~~~I~~~l~~L   65 (140)
T 1jkg_A           15 RAAEEFVNVYYTTMDK-RRRLLSRLYMGTATLVWN--GNAVSGQESLSEFFEML   65 (140)
T ss_dssp             HHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEET--TEEEESHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHhcCCCcEEEEC--CeeecCHHHHHHHHHhC
Confidence            3467889999999987 788899999999887643  35689999999988744

>3gzx_B Biphenyl dioxygenase subunit beta; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} SCOP: d.17.4.4 PDB: 3gzy_B* 2yfi_B 2xr8_B* 2xrx_B* 2xsh_B 2xso_B 2yfj_B* 2yfl_B*

Probab=89.12  E-value=2.8  Score=33.04  Aligned_cols=54  Identities=11%  Similarity=-0.082  Sum_probs=39.3

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCC------------------ccCHHHHHHHHHHHH
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP------------------FLGRKATLDFFKKFS  138 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~P------------------i~Greav~~ff~~~~  138 (179)
                      ...+.+-++..+++.+|++...+||+|||.|+-|.....                  ..|+..++.-..++.
T Consensus        24 ~i~~~l~~~a~llD~~~~~~w~~lft~D~~Y~~p~~~~~~~~d~~~~~~~~~~~~~~~d~r~~L~~RV~rl~   95 (186)
T 3gzx_B           24 QVEQFYYREAQLLDHHAFQAWFALLAEDIHYWMPIRTVRTAREQGLEYVPAGANAHFDDTHATMYGRIRQKT   95 (186)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccCHHHHHHhCCCCEEEEEecCCCccccccccccCccccceeeeCCHHHHHHHHHHHh
Confidence            344556666668999999999999999999986654321                  136777777776664

>2bmo_B Oxygenase-beta NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: d.17.4.4 PDB: 2bmq_B 2bmr_B* 1o7n_B 1ndo_B 1o7g_B* 1o7h_B 1o7m_B 1eg9_B 1o7p_B* 1o7w_B 1uuv_B 1uuw_B 2hmj_B 2hmk_B* 2hml_B* 2hmm_B* 2hmn_B* 2hmo_B*

Probab=88.84  E-value=2.1  Score=34.00  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHh-hhccCceEeeCC
Q 030318           86 GAVVVRRFYAGINGRDLASVEE-LIADDCVYEDLI  119 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~e-LfApD~v~~dp~  119 (179)
                      ..+++-+|-.+++.+|++...+ ||+|||+|+-|.
T Consensus        34 I~~fl~reA~lLD~~~~d~W~~~lfteD~~y~~p~   68 (194)
T 2bmo_B           34 VTTLLTREAHLLDIQAYKAWLEHFVAPEIKYQVIS   68 (194)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcccCHHHHHHhhcCCCEEEEEec
Confidence            3445555557899999999999 999999997543

>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0

Probab=88.54  E-value=0.84  Score=34.47  Aligned_cols=84  Identities=12%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC---C---CCccCHHHHHHHHHHHHHhcCCCeEEEEEee----e
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF---P---RPFLGRKATLDFFKKFSDSISSDLQFVIDDI----S  153 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~---~---~Pi~Greav~~ff~~~~~afp~dl~~~I~ev----~  153 (179)
                      ....+-|+.||..++. |.+.|..+|.++..+.-...   +   ..+.|+++|.+.+..+-  + .+.+..|..+    .
T Consensus        11 ~vg~~Fv~~YY~~ld~-~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp--~-~~~~~~I~tvD~Qps   86 (140)
T 3q90_A           11 LVGREFVRQYYTLLNQ-APDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQN--F-TNCHTKIRHVDAHAT   86 (140)
T ss_dssp             HHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTC--C-CSCEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhc-CHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCC--C-ccceEEEEeEEEEEe
Confidence            4567889999999984 77789999999986642111   1   25789999999888651  2 1456666543    2


Q ss_pred             cCCCceEEEEEEEEeCCc
Q 030318          154 AEDSSANGKESHFLSAKV  171 (179)
Q Consensus       154 egD~~aV~v~w~lew~~~  171 (179)
                      .+++.-|.|...+.+++.
T Consensus        87 ~~~gilI~V~G~l~~~~~  104 (140)
T 3q90_A           87 LNDGVVVQVMGLLSNNNQ  104 (140)
T ss_dssp             GGGCEEEEEEEEEECTTC
T ss_pred             CCCCEEEEEEEEEecCCC
Confidence            344577777777777664

>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwu_A* 1mwr_A 1mws_A* 1mwt_A*

Probab=84.30  E-value=1.4  Score=41.12  Aligned_cols=76  Identities=9%  Similarity=0.026  Sum_probs=48.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcC-CCeEEEEEeee--cCCCceEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS-SDLQFVIDDIS--AEDSSANG  161 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp-~dl~~~I~ev~--egD~~aV~  161 (179)
                      ++++.+++|+++|+++|++++.++.+++..-        -..++++.+-++.+++++. .++++++..+.  +++...+.
T Consensus         3 ~~~~~~~~f~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   74 (646)
T 1vqq_A            3 SKDKEINNTIDAIEDKNFKQVYKDSSYISKS--------DNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVD   74 (646)
T ss_dssp             --CHHHHHHHHHHHTTCHHHHHHTBCHHHHH--------HHCHHHHHTHHHHHHHHHTCCCEEEEEEEEEEEETTEEEEE
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHhhchhhhh--------cCCHHHHHHHHHHHHhhhccCCceEEeccccccCCCeEEEE
Confidence            3567899999999999999999988764211        1244566666666666553 46777777653  23323455


Q ss_pred             EEEEEEe
Q 030318          162 KESHFLS  168 (179)
Q Consensus       162 v~w~lew  168 (179)
                      +++.++|
T Consensus        75 ~~~~~~~   81 (646)
T 1vqq_A           75 AQYKIKT   81 (646)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1oh0a_	125	d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, ste	1e-09
d1m98a2	142	d.17.4.6 (A:176-317) Orange carotenoid protein, C-	2e-09
d2f99a1	140	d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyc	4e-07
d1ohpa1	125	d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase	8e-07
d1tuha_	131	d.17.4.11 (A:) Hypothetical protein egc068 from a	1e-06
d1s5aa_	139	d.17.4.10 (A:) Hypothetical protein YesE {Bacillus	4e-06
d2a15a1	132	d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {M	2e-05
d3ec9a1	130	d.17.4.10 (A:10-139) Uncharacterized protein BTHI0	3e-05
d2k54a1	123	d.17.4.29 (A:1-123) Uncharacterized protein Atu074	5e-05
d1nwwa_	145	d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhod	6e-05
d1z1sa1	129	d.17.4.10 (A:1-129) Uncharacterized protein PA3332	8e-05
d3en8a1	127	d.17.4.20 (A:1-127) Uncharacterized protein BxeB20	2e-04
d1sjwa_	142	d.17.4.9 (A:) Nogalonic acid methyl ester cyclase	2e-04
d3ebta1	131	d.17.4.9 (A:1-131) Uncharacterized protein BPSS013	3e-04
d3dm8a1	135	d.17.4.20 (A:1-135) Uncharacterized protein Rpa434	4e-04
d2gexa1	138	d.17.4.9 (A:2-139) Nogalamycin biosynthesis protei	6e-04
d2bnga1	132	d.17.4.8 (A:13-144) Uncharacterized protein Mb2760	7e-04
d2geya1	144	d.17.4.9 (A:2-145) Putative hydroxylase AclR {Stre	0.001
d3dmca1	133	d.17.4.10 (A:1-133) Uncharacterized protein Ava226	0.004

>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]} Length = 125

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Pseudomonas putida [TaxId: 303]

 Score = 51.7 bits (123), Expect = 1e-09
 Identities = 11/71 (15%), Positives = 28/71 (39%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           ++ R+   ++  D+ ++ ++ ADD   ED     P  GR+    F+++            
Sbjct: 10  LMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLT 69

Query: 149 IDDISAEDSSA 159
               ++ +   
Sbjct: 70  GPVRASHNGCG 80

>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]} Length = 142

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Orange carotenoid protein, C-terminal domain
domain: Orange carotenoid protein, C-terminal domain
species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 69  VASPLPTTSNVD-GDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGR 127
           V  P   +       +G     V ++   +N  D  ++  L A+D   +   F +P +G+
Sbjct: 3   VVPPQEMSQRTKVQIEGVTNSTVLQYMDNLNANDFDNLISLFAEDGALQP-PFQKPIVGK 61

Query: 128 KATLDFFKKFSDSISSDLQFVIDDISAEDSSA 159
           + TL FF++   ++    +  + + + +  + 
Sbjct: 62  ENTLRFFREECQNLKLIPERGVSEPTEDGYTQ 93

>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase, AknH {Streptomyces galilaeus [TaxId: 33899]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Aklanonic acid methyl ester cyclase, AknH
species: Streptomyces galilaeus [TaxId: 33899]

 Score = 44.8 bits (105), Expect = 4e-07
 Identities = 9/64 (14%), Positives = 17/64 (26%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
            VRR     N      V + I  + +    +      G +           + S + +  
Sbjct: 6   AVRRMVEAYNTGKTDDVADYIHPEYMNPGTLEFTSLRGPELFAINVAWVKKTFSEEARLE 65

Query: 149 IDDI 152
              I
Sbjct: 66  EVGI 69

>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]} Length = 125

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]

 Score = 44.1 bits (103), Expect = 8e-07
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           VV+R+ A +N  DL  +  L ADD   E+ +   P  G  A  +F+          ++  
Sbjct: 10  VVQRYVAALNAGDLDGIVALFADDATVENPVGSEPRSGTAAIREFYANSLKLP-LAVELT 68

Query: 149 IDDI 152
            +  
Sbjct: 69  QEVR 72

>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a soil-derived mobile gene cassette {uncultured organism [TaxId: 155900]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Hypothetical protein egc068 from a soil-derived mobile gene cassette
domain: Hypothetical protein egc068 from a soil-derived mobile gene cassette
species: uncultured organism [TaxId: 155900]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYED---LIFPRPFLGRKATLDFFKKFSDSISSDL 145
            VRR YA  N  D+ ++ EL  ++  +             GR+A    F ++        
Sbjct: 9   TVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTF 68

Query: 146 QFVIDDISAED 156
           + V+  +   D
Sbjct: 69  KAVLLHVLKSD 79

>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Hypothetical protein YesE
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGR 127
            +R+F A +  +D+ S  EL  ++ V+E    P     R
Sbjct: 10  TLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKR 48

>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 132

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Hypothetical protein Rv0760c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPR-------PFLGRKATLDFFKKFSDSI 141
             +  +  +   D      L+ADD V ED I             G++A   FF     + 
Sbjct: 8   ASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN 67

Query: 142 SSDLQFVIDDISAED 156
              +       S+  
Sbjct: 68  RLTVTCEETFPSSSP 82

>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein BTHI0051
species: Burkholderia thailandensis [TaxId: 57975]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYED---LIFPRPFLGRKATLDFFKKFSDSISSDL 145
           +V   YA  +  D A++   IA    + +         +      +    +         
Sbjct: 7   IVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGY 66

Query: 146 QFVIDDISAED 156
            F +D +    
Sbjct: 67  TFKLDALHDAG 77

>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]} Length = 123

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0742-like
domain: Uncharacterized protein Atu0742
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 9/49 (18%), Positives = 14/49 (28%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF 137
            V++     N RD+ +     ADDC Y                    + 
Sbjct: 8   PVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRHIER 56

>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 145

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Limonene-1,2-epoxide hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 64  RTAVDVASPLPTTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP 123
             + D A+   +T +          +V  F   +   D A + E  A+D +Y+++  P P
Sbjct: 6   WASKDSAAGAASTPDEK--------IVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLP-P 56

Query: 124 FLGRKATLDFFKKF 137
             GR A        
Sbjct: 57  AYGRDAVEQTLAGL 70

>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein PA3332
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 8e-05
 Identities = 8/64 (12%), Positives = 16/64 (25%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           ++      +   D     +L   + V E    P  +  R    +            L   
Sbjct: 6   ILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVR 65

Query: 149 IDDI 152
             D+
Sbjct: 66  FTDV 69

>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein BxeB2092
species: Burkholderia xenovorans [TaxId: 36873]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 6/51 (11%), Positives = 13/51 (25%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSD 139
            +   +      D  +  ++  DD + +        LGR            
Sbjct: 9   ALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRMNLQALRSHHPG 59

>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL {Streptomyces nogalater [TaxId: 38314]} Length = 142

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalonic acid methyl ester cyclase SnoaL
species: Streptomyces nogalater [TaxId: 38314]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 21/68 (30%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +VRR  +  N      V+E I  D +    +      G KA          + S + +  
Sbjct: 6   IVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLE 65

Query: 149 IDDISAED 156
              I    
Sbjct: 66  EVRIEERG 73

>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Uncharacterized protein BPSS0132
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPF 124
            VR  Y   + RDL  V   +A D  +       P+
Sbjct: 7   TVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPY 42

>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein Rpa4348
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPF 124
             R  +  +N R    +  +I D+  +        F
Sbjct: 9   FSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMF 44

>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]} Length = 138

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalamycin biosynthesis protein SnoL
species: Streptomyces nogalater [TaxId: 38314]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 11/81 (13%)

Query: 75  TTSNVDGDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFF 134
           TT+N +              A  N  D++ V    A D V+ D       +  +  +   
Sbjct: 2   TTANKE--------RCLEMVAAWNRWDVSGVVAHWAPDVVHYD--DEDKPVSAEEVVRRM 51

Query: 135 KKFSDSISSDLQFVIDDISAE 155
               ++   DL+  +  I  E
Sbjct: 52  NSAVEAF-PDLRLDVRSIVGE 71

>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 132

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Uncharacterized protein Mb2760
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.1 bits (82), Expect = 7e-04
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS 142
            V  F   +   D  +V+  + DD VYE++ F     G + T    ++    + 
Sbjct: 8   AVEAFLNALQNEDFDTVDAALGDDLVYENVGFS-RIRGGRRTATLLRRMQGRVG 60

>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]} Length = 144

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Putative hydroxylase AclR
species: Streptomyces galilaeus [TaxId: 33899]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           +     A  N  DL+ + +  + D V+         +     +   +    +       V
Sbjct: 8   LCLEMVAAWNRWDLSGIIKHWSPDIVH---YSEDNEVSSADMVKLMEGGLKAFPDLQLEV 64

Query: 149 IDDISAED 156
              ++ ED
Sbjct: 65  KSIMAEED 72

>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]} Length = 133

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein Ava2261
species: Anabaena variabilis [TaxId: 1172]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
               F  G+   +     +++ +D  +   +    F G     +  K+F   +S      
Sbjct: 16  GFEFFTQGLATGEWQKFLDMLTEDFTFWFPM--GEFHGLNVGKERAKEFFTYVSESFHTG 73

Query: 149 IDDISAEDSSANGKESHF 166
           I   S +  ++N     F
Sbjct: 74  IQISSLDRVTSNETTVVF 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1m98a2	142	Orange carotenoid protein, C-terminal domain {Cyan	99.68
d1nwwa_	145	Limonene-1,2-epoxide hydrolase {Rhodococcus erythr	99.49
d2gexa1	138	Nogalamycin biosynthesis protein SnoL {Streptomyce	99.43
d3dxoa1	117	Uncharacterized protein Atu0744 {Agrobacterium tum	99.43
d1oh0a_	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	99.43
d2f99a1	140	Aklanonic acid methyl ester cyclase, AknH {Strepto	99.41
d2geya1	144	Putative hydroxylase AclR {Streptomyces galilaeus	99.4
d2k54a1	123	Uncharacterized protein Atu0742 {Agrobacterium tum	99.39
d3ebta1	131	Uncharacterized protein BPSS0132 {Burkholderia pse	99.38
d1ohpa1	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	99.37
d1z1sa1	129	Uncharacterized protein PA3332 {Pseudomonas aerugi	99.34
d1tuha_	131	Hypothetical protein egc068 from a soil-derived mo	99.33
d3dm8a1	135	Uncharacterized protein Rpa4348 {Rhodopseudomonas	99.32
d2a15a1	132	Hypothetical protein Rv0760c {Mycobacterium tuberc	99.32
d3en8a1	127	Uncharacterized protein BxeB2092 {Burkholderia xen	99.32
d2bnga1	132	Uncharacterized protein Mb2760 {Mycobacterium tube	99.3
d1sjwa_	142	Nogalonic acid methyl ester cyclase SnoaL {Strepto	99.29
d1s5aa_	139	Hypothetical protein YesE {Bacillus subtilis [TaxI	99.28
d3dmca1	133	Uncharacterized protein Ava2261 {Anabaena variabil	99.26
d3ec9a1	130	Uncharacterized protein BTHI0051 {Burkholderia tha	99.21
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	98.99
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	98.81
d3cu3a1	162	Uncharacterized protein NpunR1993 {Nostoc punctifo	98.65
d3b7ca1	121	Uncharacterized protein SO0125 {Shewanella oneiden	98.51
d2owpa1	128	Hypothetical protein BxeB1374 {Burkholderia xenovo	98.44
d3cnxa1	153	Uncharacterized protein SAV4671 {Streptomyces aver	98.43
d2rcda1	127	Uncharacterized protein ECA3500 {Pectobacterium at	98.4
d2rgqa1	133	Uncharacterized protein NpunR3134 {Nostoc punctifo	98.38
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	98.35
d2ux0a1	135	Association domain of calcium/calmodulin-dependent	98.21
d3b8la1	144	Uncharacterized protein Saro3538 {Novosphingobium	98.05
d3ef8a1	149	Uncharacterized protein Saro1465 {Novosphingobium	97.98
d3ejva1	159	Uncharacterized protein Saro2766 {Novosphingobium	97.88
d2chca1	167	Uncharacterized protein Rv3472 {Mycobacterium tube	97.84
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	97.48
d2f86b1	129	Association domain of calcium/calmodulin-dependent	97.4
d2imja1	155	Hypothetical protein PFL3262 {Pseudomonas fluoresc	97.39
d2rfra1	153	Uncharacterized protein Saro3722 {Novosphingobium	97.34
d3ebya1	157	Putative hydroxylase subunit Saro3860 {Novosphingo	96.72
d1m98a1	174	Orange carotenoid protein, N-terminal domain {Cyan	96.63
d3blza1	124	Uncharacterized protein Sbal0622 {Shewanella balti	96.6
d3er7a1	118	Uncharacterized protein Exig0174 {Exiguobacterium	96.05
d3e99a1	163	Benzoate 1,2-dioxygenase beta subunit BenB {Burkho	95.82
d1idpa_	147	Scytalone dehydratase {Fungus (Magnaporthe grisea)	95.47
d2qiya1	139	UBP3-associated protein BRE5 {Baker's yeast (Sacch	94.89
d3ecfa1	128	Uncharacterized protein Ava4193 {Anabaena variabil	94.77
d1wqlb1	182	Small subunit of cumene dioxygenase CumA2 {Pseudom	94.46
d1zo2a1	117	Nuclear transport factor-2 (NTF2) {Cryptosporidium	94.36
d1ulib_	177	Biphenyl dioxygenase small subunit BphA2 {Rhodococ	93.79
d1gy6a_	125	Nuclear transport factor-2 (NTF2) {Rat (Rattus nor	93.18
d1tp6a_	126	Hypothetical protein PA1314 {Pseudomonas aeruginos	92.85
d1jkga_	139	NTF2-related export protein 1 (p15) {Human (Homo s	91.23
d1gy7a_	121	Nuclear transport factor-2 (NTF2) {Baker's yeast (	90.97
d2b1xb1	167	Naphthalene 1,2-dioxygenase beta subunit {Rhodococ	90.9
d1vqqa1	112	Penicillin binding protein 2a (PBP2A), N-terminal	87.53

>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Orange carotenoid protein, C-terminal domain
domain: Orange carotenoid protein, C-terminal domain
species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]

Probab=99.68  E-value=1.9e-17  Score=128.13  Aligned_cols=96  Identities=17%  Similarity=0.322  Sum_probs=80.6

Q ss_pred             CC-CCCCCCCCCCC----CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCe
Q 030318           71 SP-LPTTSNVDGDD----GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDL  145 (179)
Q Consensus        71 ~p-~~~t~~~~~~~----~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl  145 (179)
                      || +||++++++.+    +..+.+|++||+++|++|++++.+||++|+++++| +++|++|++++++||++.++++....
T Consensus         1 ~~~~~p~~~~~r~~~~~~~i~~~~V~~Y~~a~na~D~d~~~~lFa~Dav~~~P-~~~p~~G~eaI~~f~~~~~~~~~~~p   79 (142)
T d1m98a2           1 EPVVPPQEMSQRTKVQIEGVTNSTVLQYMDNLNANDFDNLISLFAEDGALQPP-FQKPIVGKENTLRFFREECQNLKLIP   79 (142)
T ss_dssp             CCCCCCCCGGGCCCCCBBTBCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECT-TSCCEESHHHHHHHHHHHCTTCEEEE
T ss_pred             CCcCCCCCCCcccccccccccHHHHHHHHHHHhcCCHHHHHHHcCCCeEEeCC-CCccccCHHHHHHHHHHhcccceecc
Confidence            67 88888888733    67888999999999999999999999999999975 56799999999999999998886555


Q ss_pred             EEEEEeeecCCCceEEEEEEEE
Q 030318          146 QFVIDDISAEDSSANGKESHFL  167 (179)
Q Consensus       146 ~~~I~ev~egD~~aV~v~w~le  167 (179)
                      +.++.+..++++.++.++++++
T Consensus        80 ~~g~~~~~~~g~~~v~vtgkV~  101 (142)
T d1m98a2          80 ERGVSEPTEDGYTQIKVTGKVQ  101 (142)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEE
T ss_pred             cceeeEeecCCcEEEEEEEEEe
Confidence            5666666666677888887654

>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Limonene-1,2-epoxide hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.49  E-value=1.1e-13  Score=103.45  Aligned_cols=89  Identities=19%  Similarity=0.241  Sum_probs=73.1

Q ss_pred             CCCCCCCCC-CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee
Q 030318           74 PTTSNVDGD-DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI  152 (179)
Q Consensus        74 ~~t~~~~~~-~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev  152 (179)
                      ..+.++.+. +..++++|++||+|||++|++++.++|+||++|++++.+ ++.|++++++++..++..++ +.++++..+
T Consensus         7 ~~~~~~~~~~~~~~~~lv~~~~~A~~~~D~~~~~~~~~~D~~~~~~~~~-~~~G~e~~~~~~~~~~~~~~-~~~~~i~~~   84 (145)
T d1nwwa_           7 ASKDSAAGAASTPDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLP-PAYGRDAVEQTLAGLFTVMS-IDAVETFHI   84 (145)
T ss_dssp             SCCCTTTTCCCSHHHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTSC-CEESHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHhccceEecCCcc-cccCHHHHHHHHHhhhhhcc-cccceEEEE
Confidence            333344443 478999999999999999999999999999999998876 79999999999999999997 789999886


Q ss_pred             e-cCCCceEEEEEEE
Q 030318          153 S-AEDSSANGKESHF  166 (179)
Q Consensus       153 ~-egD~~aV~v~w~l  166 (179)
                      . +||  .+.+.|+.
T Consensus        85 ~~~~~--~v~~~~~~   97 (145)
T d1nwwa_          85 GSSNG--LVYTERVD   97 (145)
T ss_dssp             EEETT--EEEEEEEE
T ss_pred             EecCc--eEEEEEee
Confidence            5 555  55555543

>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalamycin biosynthesis protein SnoL
species: Streptomyces nogalater [TaxId: 38314]

Probab=99.43  E-value=3.3e-13  Score=99.45  Aligned_cols=82  Identities=15%  Similarity=0.073  Sum_probs=67.9

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      .++++|++||+|||++|++.+.++|+||++|++|+ .. ..|++++++++..++.+|+ +++++++++. +||.+.+..+
T Consensus         4 an~e~~~~~~~a~~~~D~~~~~~~~a~D~~~~~~~-~~-~~G~~~~~~~~~~~~~~~~-d~~~~~~~~~~~gd~v~~~~~   80 (138)
T d2gexa1           4 ANKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDE-DK-PVSAEEVVRRMNSAVEAFP-DLRLDVRSIVGEGDRVMLRIT   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT-SC-EECHHHHHHHHHHHHHHCT-TCEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHhCccccccCCC-CC-ccCHHHHHHHHHHHHHhcc-Cceeeeeeeeeccccceeeec
Confidence            58899999999999999999999999999999864 33 4699999999999999997 8999999965 5664444444


Q ss_pred             EEEEeC
Q 030318          164 SHFLSA  169 (179)
Q Consensus       164 w~lew~  169 (179)
                      |++...
T Consensus        81 ~~~~~~   86 (138)
T d2gexa1          81 CSATHQ   86 (138)
T ss_dssp             EEEECC
T ss_pred             cccccc
Confidence            444443

>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0744-like
domain: Uncharacterized protein Atu0744
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.43  E-value=3e-13  Score=97.97  Aligned_cols=85  Identities=13%  Similarity=0.172  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHhCCC----HHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEE
Q 030318           86 GAVVVRRFYAGINGRD----LASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANG  161 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D----~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~  161 (179)
                      +..++++|+++||+.|    .+++.++|+||++|+||..  |+.|++++++|++.+++++| ++++.+...+.+++..+.
T Consensus         4 ~~~~~~~y~~awn~~d~~~~~~~l~~~~a~d~~~~dP~~--~~~G~~ai~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~   80 (117)
T d3dxoa1           4 HLTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM--QGEGQQGIAAMIEAARQKFP-GYRFVLAGTPDGHGNFTR   80 (117)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC--EEEHHHHHHHHHHHHHHHST-TCEEEEEEEEEEETTEEE
T ss_pred             hHHHHHHHHHHHhccCchhhHHHHHHHccCCEEEECCCC--CcccHHHHHHHHHHHHHhCC-CcEEEEEEEEecCCCEEE
Confidence            5789999999999999    5679999999999999753  68999999999999999997 789987653333345889


Q ss_pred             EEEEEEeCCcee
Q 030318          162 KESHFLSAKVAA  173 (179)
Q Consensus       162 v~w~lew~~~~~  173 (179)
                      ++|++..++...
T Consensus        81 ~~w~~~~~~~~~   92 (117)
T d3dxoa1          81 FSWRLISPDGDD   92 (117)
T ss_dssp             EEEEEECTTSCE
T ss_pred             EEEEEecCCCCe
Confidence            999999887643

>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Pseudomonas putida [TaxId: 303]

Probab=99.43  E-value=1.5e-13  Score=99.05  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKES  164 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~w  164 (179)
                      ...++|++|+++||++|++++.+||+||++|++|..+++++|++++++||..++..++ ...+.+..+...+...+.+.|
T Consensus         6 ~~~~~v~~y~~a~~~~D~d~~~~l~~~d~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (125)
T d1oh0a_           6 EVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGK-VRACLTGPVRASHNGCGAMPF   84 (125)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTTSCCEEHHHHHHHHHHHHHSSSC-CEEEESSCCEECSSSEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCCCcccccHHHHHHHHHHHHHhcc-cceEEEEEEEEcCCCEEEEEE
Confidence            4678999999999999999999999999999998777789999999999999998886 556666554433334555555


Q ss_pred             EEE
Q 030318          165 HFL  167 (179)
Q Consensus       165 ~le  167 (179)
                      +..
T Consensus        85 ~~~   87 (125)
T d1oh0a_          85 RVE   87 (125)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase, AknH {Streptomyces galilaeus [TaxId: 33899]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Aklanonic acid methyl ester cyclase, AknH
species: Streptomyces galilaeus [TaxId: 33899]

Probab=99.41  E-value=1.2e-13  Score=103.07  Aligned_cols=81  Identities=12%  Similarity=0.048  Sum_probs=69.3

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeec-CCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISA-EDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~e-gD~~aV~v~  163 (179)
                      .+.++|++||++||++|++.+.++++||++++++..+++++|+++++++++.++.+||+.+++++..+.+ ||  .|.++
T Consensus         2 e~~a~vr~~~~a~~~gd~d~~~~~~~~D~~~~~~~~~~~~~G~e~~~~~~~~~~~~fpd~~~~~~~~~~~~gd--~V~~~   79 (140)
T d2f99a1           2 EQIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLEFTSLRGPELFAINVAWVKKTFSEEARLEEVGIEERAD--WVRAR   79 (140)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTTTCCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEEEETT--EEEEE
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHhcCceEEEecCCCCCCccCHHHHHHHHHHHhhcCCcceEEEEEEEecCCC--EEEEE
Confidence            4789999999999999999999999999999988777789999999999999999998667888777654 66  55555


Q ss_pred             EEEE
Q 030318          164 SHFL  167 (179)
Q Consensus       164 w~le  167 (179)
                      |+++
T Consensus        80 ~~~~   83 (140)
T d2f99a1          80 LVLY   83 (140)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Putative hydroxylase AclR
species: Streptomyces galilaeus [TaxId: 33899]

Probab=99.40  E-value=5.2e-13  Score=99.56  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      .+++++++||+|||++|++++.++|+||++|++++  . ..|+++++++++.++.+|| +++++++++. +|+  .|.++
T Consensus         4 ~~~~l~~~~~~A~n~~D~~~~~~~~a~d~v~~~~~--~-~~G~~~~~~~~~~~~~~~p-d~~~~~~~~~~~g~--~v~~~   77 (144)
T d2geya1           4 ERKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSED--N-EVSSADMVKLMEGGLKAFP-DLQLEVKSIMAEED--RVALR   77 (144)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEETT--E-EECHHHHHHHHHHHHHHST-TCEEEEEEEEEETT--EEEEE
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHhCcccccccCC--c-ccCHHHHHHHHHHHHHhcc-cccceeeeEEeccc--cceeE
Confidence            47899999999999999999999999999999863  3 3599999999999999997 8999999965 565  45555


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |+++.
T Consensus        78 ~~~~g   82 (144)
T d2geya1          78 ITVTA   82 (144)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            55443

>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0742-like
domain: Uncharacterized protein Atu0742
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.39  E-value=3.5e-13  Score=98.37  Aligned_cols=80  Identities=14%  Similarity=-0.004  Sum_probs=67.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v~  163 (179)
                      ..+.+|++||+|||++|+|++.++|+||++|++++.+++..|++++++++...++. + ++++++..+ .+||  .|.+.
T Consensus         4 ~~~~~V~~~~~A~~~~D~e~~~~~~aeD~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~-~~~~~~~~~~~~gd--~vv~~   79 (123)
T d2k54a1           4 EIELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRHIERFKE-P-DLYGELLTRVIVGN--VVIDH   79 (123)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETTTEEEEESHHHHHHHHHHHTTC-T-TCEEEEEEEEEETT--EEEEE
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEEcCCCcceechHHHHHHHHHhhhcc-c-cceeeeEEEEecCC--EEEEE
Confidence            35679999999999999999999999999999999888899999999999988764 3 689999885 4666  55566


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |+..+
T Consensus        80 ~~~~~   84 (123)
T d2k54a1          80 ETVTR   84 (123)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            66555

>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Uncharacterized protein BPSS0132
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.38  E-value=6.9e-13  Score=95.87  Aligned_cols=84  Identities=15%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC------CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCC
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI------FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDS  157 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~------~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~  157 (179)
                      .+.++|++||++|+++|++++.++++||++|+.|.      +.++.+|+++++++++.+...++ +.++++.++. +|+.
T Consensus         3 ~n~~~v~~~~~a~~~~D~~~~~~~~a~D~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~   81 (131)
T d3ebta1           3 NNMQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIA-EMRLAPDEFIESGER   81 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEE-EEEEEEEEEEEETTE
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHhCcceEEEEcCCCcccCccccccchHHHHHhhhhhccccC-cceeeEEEEEeccce
Confidence            48899999999999999999999999999998763      34568999999999999998885 7899988864 5664


Q ss_pred             ceEEEEEEEEeC
Q 030318          158 SANGKESHFLSA  169 (179)
Q Consensus       158 ~aV~v~w~lew~  169 (179)
                      +.+..+++++.+
T Consensus        82 v~~~~~~~~~~~   93 (131)
T d3ebta1          82 IVVLGTRRVTAV   93 (131)
T ss_dssp             EEEEEEEEEEET
T ss_pred             EEEEEEEEEEec
Confidence            455455555543

>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]

Probab=99.37  E-value=5.8e-13  Score=94.92  Aligned_cols=85  Identities=21%  Similarity=0.241  Sum_probs=66.6

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKES  164 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~w  164 (179)
                      ...+++++|+++||++|++++.+||+||++|++|+.+.|+.|+++++++|..+++.++ ++++.......++...+..++
T Consensus         6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (125)
T d1ohpa1           6 HMTAVVQRYVAALNAGDLDGIVALFADDATVENPVGSEPRSGTAAIREFYANSLKLPL-AVELTQEVRAVANEAAFAFIV   84 (125)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTTSCCEESHHHHHHHHHHHTSSCC-EEEECSCCEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCceEEecCccCcccccHHHHHHHHHHHhhcCC-ceEEEEEEEEecceEEEEEEE
Confidence            3567999999999999999999999999999998888889999999999999998875 556544334555534443444


Q ss_pred             EEEeCC
Q 030318          165 HFLSAK  170 (179)
Q Consensus       165 ~lew~~  170 (179)
                      ++...+
T Consensus        85 ~~~~~g   90 (125)
T d1ohpa1          85 SFEYQG   90 (125)
T ss_dssp             EEEETT
T ss_pred             EEecCC
Confidence            444444

>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein PA3332
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.34  E-value=5.5e-13  Score=95.73  Aligned_cols=84  Identities=13%  Similarity=0.048  Sum_probs=64.5

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC----CCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCce
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL----IFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSA  159 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp----~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~a  159 (179)
                      |.++++|++||++++++|++++.+||+||++|+.|    ++++.++||++++++++.+...++ .....+......|...
T Consensus         1 M~~~eiv~~~~~~~~~gD~~~~~~l~a~D~v~~~p~~~~~~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~d~~~   79 (129)
T d1z1sa1           1 MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLT-VRFTDVQFYETADPDL   79 (129)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGGGTEE-EEECCCEEECCSSTTE
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHhcCceEEEEecCCcccceEEeCHHHHHHHHHhhhhccc-cccceeEEEEEecCCE
Confidence            57899999999999999999999999999999976    345568999999999999988875 2233333333334456


Q ss_pred             EEEEEEEEe
Q 030318          160 NGKESHFLS  168 (179)
Q Consensus       160 V~v~w~lew  168 (179)
                      +.+.|+.+.
T Consensus        80 v~~~~~~~~   88 (129)
T d1z1sa1          80 AIGEFHGDG   88 (129)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            666666654

>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a soil-derived mobile gene cassette {uncultured organism [TaxId: 155900]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Hypothetical protein egc068 from a soil-derived mobile gene cassette
domain: Hypothetical protein egc068 from a soil-derived mobile gene cassette
species: uncultured organism [TaxId: 155900]

Probab=99.33  E-value=4e-12  Score=91.56  Aligned_cols=79  Identities=22%  Similarity=0.366  Sum_probs=64.9

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC---CCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI---FPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSAN  160 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~---~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV  160 (179)
                      .|.++|++||+|||++|++++.+|++||++|+.|+   ++++.+|++++.+++....+.++...++.+..+ ..|+...+
T Consensus         5 ~n~~vv~~~~~a~~~~D~~~~~~l~~~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   84 (131)
T d1tuha_           5 QNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHVLKSDDGRVI   84 (131)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEEEECTTSCEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEEecCCCCcccccccHHHHHHHHHhhhhhcCCCceEEEEEEEecCCEEEE
Confidence            58899999999999999999999999999999874   344578999999999999998876678888774 45554444


Q ss_pred             EEE
Q 030318          161 GKE  163 (179)
Q Consensus       161 ~v~  163 (179)
                      ...
T Consensus        85 ~~~   87 (131)
T d1tuha_          85 GIH   87 (131)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein Rpa4348
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.32  E-value=2e-12  Score=94.82  Aligned_cols=84  Identities=17%  Similarity=0.201  Sum_probs=68.6

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC------CCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL------IFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AED  156 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp------~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD  156 (179)
                      ....+++++||+|+|++|++.+.+|++||++|..|      |+.++..|++++++||+.+...++ +.+++++.+. +||
T Consensus         4 ~~~~~~~~~~y~A~~~~d~d~~~~l~~~D~~~~~~g~~~~~P~~G~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d   82 (135)
T d3dm8a1           4 HSLWRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVR-IYRYHRESVMLGID   82 (135)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEE-EEEEEEEEEEECSS
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHhcCcceEEEccccccccccccccccchhhhhhhhhcccccc-ceeeeeeeEEecCc
Confidence            35788999999999999999999999999999865      345678999999999999999996 7899998865 455


Q ss_pred             CceEEEEEEEEe
Q 030318          157 SSANGKESHFLS  168 (179)
Q Consensus       157 ~~aV~v~w~lew  168 (179)
                      ...+..+|+++-
T Consensus        83 ~v~v~~~~~~~~   94 (135)
T d3dm8a1          83 SAASMVRYSLTA   94 (135)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             eEEEEEEEeEEe
Confidence            444444555544

>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Hypothetical protein Rv0760c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=6.6e-12  Score=90.25  Aligned_cols=84  Identities=18%  Similarity=0.204  Sum_probs=66.0

Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC-------CCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eec
Q 030318           83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP-------RPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISA  154 (179)
Q Consensus        83 ~~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~-------~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~e  154 (179)
                      +.+..+++++||+|+|++|++++.+||+||++|++|..+       ++.+|+++++++|..+....+  ..+.+.. ...
T Consensus         2 ~~p~~~~~~~~~~a~~~~D~~~~~~l~a~D~~~~~P~~~~~~~~~~~~~~G~~ai~~~~~~~~~~~~--~~~~~~~~~~~   79 (132)
T d2a15a1           2 QSPALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAANR--LTVTCEETFPS   79 (132)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTTT--CEEEEEEEEEC
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHcCCCeEEEccCCccccCccchheehHHHHHHhhhhhhcccc--ceEEEEEEEEe
Confidence            356789999999999999999999999999999987543       457999999999999877664  3444444 344


Q ss_pred             CCCceEEEEEEEEe
Q 030318          155 EDSSANGKESHFLS  168 (179)
Q Consensus       155 gD~~aV~v~w~lew  168 (179)
                      ++...+.+.|+.++
T Consensus        80 ~~~~~v~~~~~~~~   93 (132)
T d2a15a1          80 SSPDEIAHILVLHS   93 (132)
T ss_dssp             SSTTEEEEEEEEEE
T ss_pred             cCCcEEEEEEEEee
Confidence            45567777776665

>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein BxeB2092
species: Burkholderia xenovorans [TaxId: 36873]

Probab=99.32  E-value=1.8e-12  Score=95.32  Aligned_cols=82  Identities=11%  Similarity=0.070  Sum_probs=67.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      ..+++|++||+|+|++|++++.+||+||++|++|+.+.++.|++++++|++.+...   ..++.++.+. +|+  .|.+.
T Consensus         5 ~~~~~v~~~~~A~~~gD~da~~~l~adD~v~~~p~~~~~~~G~e~i~~~~~~~~~~---~~~~~~~~~~~~g~--~vv~~   79 (127)
T d3en8a1           5 KIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRMNLQALRSHHPGK---PAGFEVRRIQGEGN--LWITE   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTTTEEEESHHHHHHHHHHTTCS---CSEEEEEEEEEETT--EEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhcCCEEEEcCCcccccchHHHHHHHHHHHhcc---CccceeEEEecCCC--EEEEE
Confidence            46789999999999999999999999999999988877899999999998876432   3577787764 554  66677


Q ss_pred             EEEEeCCc
Q 030318          164 SHFLSAKV  171 (179)
Q Consensus       164 w~lew~~~  171 (179)
                      |++..++.
T Consensus        80 ~~~t~~~~   87 (127)
T d3en8a1          80 YSISYNGR   87 (127)
T ss_dssp             EEEEETTE
T ss_pred             EEECCCCc
Confidence            77765543

>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Uncharacterized protein Mb2760
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=2.3e-12  Score=94.68  Aligned_cols=79  Identities=20%  Similarity=0.335  Sum_probs=65.9

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      .+.++|++||+|||++|++++.++|++|++|++|+.+ ++.|+++++++++.+...+  +.++++..+. +||  .|...
T Consensus         4 e~~~~V~~f~~A~~~~D~d~~~~~~a~D~v~~~~~~~-~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~gd--~v~~~   78 (132)
T d2bnga1           4 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFS-RIRGGRRTATLLRRMQGRV--GFEVKIHRIGADGA--AVLTE   78 (132)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTTE-EEECHHHHHHHHHTTTTTC--EEEEEEEEEEEETT--EEEEE
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHhccchheeccccC-CcchHHHHHHHHHhccccc--CcceEEEEeeccCC--ceEEE
Confidence            4789999999999999999999999999999998876 6999999999999876554  5789988864 555  55555


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |+...
T Consensus        79 ~~~~~   83 (132)
T d2bnga1          79 RTDAL   83 (132)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55444

>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL {Streptomyces nogalater [TaxId: 38314]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalonic acid methyl ester cyclase SnoaL
species: Streptomyces nogalater [TaxId: 38314]

Probab=99.29  E-value=1.1e-12  Score=96.47  Aligned_cols=85  Identities=16%  Similarity=0.101  Sum_probs=70.5

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee-cCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~-egD~~aV~v~  163 (179)
                      .++++|++||++||++|++.+.++++||++|++|...++..|++++++++..+..+++.....++..+. +||  .|.++
T Consensus         2 k~~eiv~~~~~a~~~gd~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd--~v~~~   79 (142)
T d1sjwa_           2 RQTEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLEEVRIEERGP--WVKAY   79 (142)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGGGTCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEEEETT--EEEEE
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHhhhhEEEeccccccccchhHHHHHHHHHHHhhhcccccceEEEEEecCC--EEEEE
Confidence            478999999999999999999999999999998776667788999999999999999865677776654 555  66666


Q ss_pred             EEEEeCCc
Q 030318          164 SHFLSAKV  171 (179)
Q Consensus       164 w~lew~~~  171 (179)
                      |+++..+.
T Consensus        80 ~~~~gt~~   87 (142)
T d1sjwa_          80 LVLYGRHV   87 (142)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEcCc
Confidence            66665443

>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Hypothetical protein YesE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.28  E-value=3.1e-12  Score=93.39  Aligned_cols=83  Identities=23%  Similarity=0.318  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC----CCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCce
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF----PRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSA  159 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~----~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~a  159 (179)
                      .++++|++|++|++++|++.+.+||+||++|+.|..    +++++|++++++++..+++.++ +.++++..+ ..+|...
T Consensus         6 ~~~e~v~~~~~a~~~~D~~~~~~l~~eD~v~~~p~~~~~~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~   84 (139)
T d1s5aa_           6 KACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIH-LSSFTAPTVYRSADSNT   84 (139)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTHHHHEE-EEEECCCEEEEBSSSSE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhCCceEEEEccCCccccceecchHHHHHhhhhchhhcc-cceeeEEEeeeeecCcc
Confidence            578999999999999999999999999999987543    3568999999999999999996 677887664 3455567


Q ss_pred             EEEEEEEEe
Q 030318          160 NGKESHFLS  168 (179)
Q Consensus       160 V~v~w~lew  168 (179)
                      +.++|+++.
T Consensus        85 v~~~~~~~~   93 (139)
T d1s5aa_          85 VIAEFQCDG   93 (139)
T ss_dssp             EEEEEEEEE
T ss_pred             ceeEEEeec
Confidence            777776654

>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein Ava2261
species: Anabaena variabilis [TaxId: 1172]

Probab=99.26  E-value=3.3e-12  Score=94.25  Aligned_cols=84  Identities=13%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCC--CCCCccCHHHHHHHHHHHHHhcCCC-eEEEEEeeecCCCceE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI--FPRPFLGRKATLDFFKKFSDSISSD-LQFVIDDISAEDSSAN  160 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~--~~~Pi~Greav~~ff~~~~~afp~d-l~~~I~ev~egD~~aV  160 (179)
                      ...++++.+|++||+++|++++.+||+||++|+.|+  +.++.+|++++++|++.+...++.. ++++++.+++++ ..|
T Consensus        11 ~~a~~~~e~f~~a~~~gD~d~~~~l~~~D~~~~~p~~~~~g~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v   89 (133)
T d3dmca1          11 KVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMGEFHGLNVGKERAKEFFTYVSESFHTGIQISSLDRVTSNE-TTV   89 (133)
T ss_dssp             HHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSGGGBEEEESHHHHHHHHHHHHHTCTTCEEEEEEEEEEECS-SEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhccceEEEecCCCcccchhhHHHHHHHhhhcccccccccceeeEEEEecCC-CEE
Confidence            445677778888889999999999999999999765  2345789999999999999998743 688888865432 356


Q ss_pred             EEEEEEEe
Q 030318          161 GKESHFLS  168 (179)
Q Consensus       161 ~v~w~lew  168 (179)
                      .+.|+.+-
T Consensus        90 vve~~~~~   97 (133)
T d3dmca1          90 VFEFRDEG   97 (133)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            66676543

>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein BTHI0051
species: Burkholderia thailandensis [TaxId: 57975]

Probab=99.21  E-value=2.5e-11  Score=87.11  Aligned_cols=84  Identities=14%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC---CCCccCHHH-HHHHHHHHHHhcCCCeEEEEEeee-cCCCce
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF---PRPFLGRKA-TLDFFKKFSDSISSDLQFVIDDIS-AEDSSA  159 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~---~~Pi~Grea-v~~ff~~~~~afp~dl~~~I~ev~-egD~~a  159 (179)
                      .+.++|++||+|+|++|++++.++++||++|++++.   .+..+|.++ ++.+++.+...++ +.+++++.+. .||...
T Consensus         3 t~~~iv~~~~~A~~~~D~d~~~~~~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~   81 (130)
T d3ec9a1           3 TPYQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWD-GYTFKLDALHDAGDTVI   81 (130)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEE-EEEEEEEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHhcCcccEEEecCCceecccEEcchhHHhHHhhhhhcccc-cceeeeEEEEecCCeeE
Confidence            578999999999999999999999999999987643   233456665 5678999988886 7889998864 566555


Q ss_pred             EEEEEEEEeC
Q 030318          160 NGKESHFLSA  169 (179)
Q Consensus       160 V~v~w~lew~  169 (179)
                      +..+|++..+
T Consensus        82 ~~~~~~~~~~   91 (130)
T d3ec9a1          82 GVGRYSGTYR   91 (130)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEEEe
Confidence            5566666554

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=98.99  E-value=8.3e-10  Score=79.12  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCceEEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSANGKE  163 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~--egD~~aV~v~  163 (179)
                      -++++.+|.+|||++|++++.+||++|+++..++.+ ++.|+++++++|..+++..+...++.+.++.  .||...+..+
T Consensus        10 I~~~~~~y~~A~~~~D~~~~~~l~t~Dav~~~~~~~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~A~~~~~   88 (132)
T d3d9ra1          10 IEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRP-AAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSADWAFVRSA   88 (132)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSC-CEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEccCCc-ceehHHHHHHHHHHHhhcCCcceeeeccceeeecCCceEEEEE
Confidence            568899999999999999999999999999865544 6899999999999999887766777776643  4553333345


Q ss_pred             EEEE
Q 030318          164 SHFL  167 (179)
Q Consensus       164 w~le  167 (179)
                      |++.
T Consensus        89 ~~~~   92 (132)
T d3d9ra1          89 TEGT   92 (132)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=2.1e-09  Score=77.74  Aligned_cols=81  Identities=10%  Similarity=0.044  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe--ee-cCCCceEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD--IS-AEDSSANGK  162 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e--v~-egD~~aV~v  162 (179)
                      .++++.+|.+|||++|++++.++|+||+++..++ +.+++|+++++++|..++..++..+++...+  +. .||.-.+..
T Consensus         5 I~~l~~~~~~A~~~~D~d~~~~l~~~Da~~~~~~-g~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~~~v~~~gD~A~~~~   83 (128)
T d2gxfa1           5 LKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKP-GMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGDTVLVLS   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSS-SCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhccCCcEecCC-CcceeehHHHHHHHHHHHHhcccccceeecceeEeecCCceEEEE
Confidence            5688999999999999999999999999998544 4468999999999999988776566666655  33 455333344


Q ss_pred             EEEEE
Q 030318          163 ESHFL  167 (179)
Q Consensus       163 ~w~le  167 (179)
                      +|++.
T Consensus        84 ~~~~~   88 (128)
T d2gxfa1          84 QTLLD   88 (128)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            55553

>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein NpunR1993
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.65  E-value=6.2e-08  Score=72.74  Aligned_cols=84  Identities=8%  Similarity=0.037  Sum_probs=62.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe--ee--cCCCceE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD--IS--AEDSSAN  160 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e--v~--egD~~aV  160 (179)
                      .-.+++.+|++|||++|++++.+||++|++|..+. ++...|+++++++++..+.......++.+..  +.  .+|...+
T Consensus         8 aI~al~~~~~~A~~~~D~d~~~~l~a~D~~~~~~~-g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~d~Avv   86 (162)
T d3cu3a1           8 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFE-GTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQLALM   86 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT-CCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHhhccCeeeeccc-ccccCCHHHHHHHHHHHHhhcccceeEEeeceEEEEecCCEEEE
Confidence            35688999999999999999999999999998654 4468899999999999987765555555544  32  4553344


Q ss_pred             EEEEEEEeC
Q 030318          161 GKESHFLSA  169 (179)
Q Consensus       161 ~v~w~lew~  169 (179)
                      ...+++...
T Consensus        87 ~~~~~~~~~   95 (162)
T d3cu3a1          87 LVVIRVILP   95 (162)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEeec
Confidence            445555443

>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein SO0125
species: Shewanella oneidensis [TaxId: 70863]

Probab=98.51  E-value=1.7e-07  Score=65.93  Aligned_cols=66  Identities=14%  Similarity=-0.086  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD  151 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e  151 (179)
                      ..+++.+|.+|||++|++++.+||++|.++.....+++..|++++++++...+.+.....++.+..
T Consensus         6 I~~~i~~~~~A~~~gD~d~~~~~~~~d~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~   71 (121)
T d3b7ca1           6 IVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTI   71 (121)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSCEEECHHHHHHHHHHHCSSGGGSCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhccCcceEecCCcceecHHHHHHHHHHhhcccccccEEEEee
Confidence            467899999999999999999999999887654445678999999999988875543345655544

>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Hypothetical protein BxeB1374
species: Burkholderia xenovorans [TaxId: 36873]

Probab=98.44  E-value=4.3e-07  Score=65.48  Aligned_cols=57  Identities=7%  Similarity=-0.010  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcC
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS  142 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp  142 (179)
                      -.+++.+|++||+++|++++.+||++|..+-....+++..|+++++++++..+...+
T Consensus        12 I~a~~~~~~~A~~~~D~~~l~~l~a~d~~~v~~~~~~~~~g~~~i~~~~~~~~~~~~   68 (128)
T d2owpa1          12 VQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEVQHGGEAIRAWRERCEPVPK   68 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSSCEEESHHHHHHHHHHSCCCCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhccCCcEEEeeccceecchhHHHHHHHHhhccCc
Confidence            567889999999999999999999999655433334568999999999999876654

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

Probab=98.43  E-value=4.4e-07  Score=67.57  Aligned_cols=84  Identities=15%  Similarity=0.163  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEee----------------CCCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYED----------------LIFPRPFLGRKATLDFFKKFSDSISSDLQFV  148 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~d----------------p~~~~Pi~Greav~~ff~~~~~afp~dl~~~  148 (179)
                      ...++..+||+|||++|++++.+++++|..+.+                .|...++.|++++++.|+..+.... .++++
T Consensus         8 ~v~aa~~af~~A~~~~D~~a~~~~w~~d~~~~~~~~~~~~~~~d~v~~~hpg~~~l~G~~ai~~~~~~~~~~~~-~~~~~   86 (153)
T d3cnxa1           8 QVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMANTE-YIQFF   86 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHHTCS-EEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcccccccccccccccccccceeeecCCCccccCHHHHHHHHHHHhcccC-cccce
Confidence            356788999999999999999999987654321                2334479999999999999998764 56777


Q ss_pred             EEee---ecCCCceEEEEEEEEeC
Q 030318          149 IDDI---SAEDSSANGKESHFLSA  169 (179)
Q Consensus       149 I~ev---~egD~~aV~v~w~lew~  169 (179)
                      +.++   ..||.--+...|++...
T Consensus        87 ~~~~~v~v~gD~A~v~~~~~v~~~  110 (153)
T d3cnxa1          87 LTDVHVSVTGDTALVTCTENILSG  110 (153)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EEEeEEEEeCcEEEEEEEEEEEee
Confidence            7663   35663334446666543

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Uncharacterized protein ECA3500
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=98.40  E-value=5.4e-07  Score=64.35  Aligned_cols=83  Identities=14%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v~  163 (179)
                      .-.++..+|++||+++|++++.+||+||+.+-..+.++++.|+++++++++......+ .......++ .-|+ ....++
T Consensus        14 eI~a~~~~~~~A~~~~D~~~l~~l~a~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g~-d~a~~~   91 (127)
T d2rcda1          14 DVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGENLYGIEEIRAFRLARPSAGL-DRALRNTVITTYGH-DMAVAS   91 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTEEEESHHHHHHHHHHSCCTTC-CCEEEEEEEEEBTT-SEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcCCCcEEEeCCCcccccHHHHHHHHHhcccccc-ceEeeeeEEEEeec-chhhhe
Confidence            3567889999999999999999999999755433345578999999999998876554 334433333 3344 344445


Q ss_pred             EEEEeC
Q 030318          164 SHFLSA  169 (179)
Q Consensus       164 w~lew~  169 (179)
                      +.....
T Consensus        92 ~~~~~~   97 (127)
T d2rcda1          92 TEFTRT   97 (127)
T ss_dssp             EEEECS
T ss_pred             eeeccc
Confidence            544433

>d2rgqa1 d.17.4.25 (A:1-133) Uncharacterized protein NpunR3134 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rv3472-like
domain: Uncharacterized protein NpunR3134
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.38  E-value=8.4e-07  Score=64.52  Aligned_cols=82  Identities=13%  Similarity=0.112  Sum_probs=61.1

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eecCCCceEEEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISAEDSSANGKE  163 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~egD~~aV~v~  163 (179)
                      ...+++.+|..+++.+|++.+.++|+||++|+.+.  ++..|++++++++...+.......+..+.. +++.++..+.++
T Consensus        10 ~I~~L~~ry~~~~D~~d~~~~~~~FteDa~~~~~~--~~~~G~~~i~~~~~~~~~~~~~~~~H~~~n~~i~~~gd~A~~~   87 (133)
T d2rgqa1          10 EIMELAARFEMSLDKEDVENYLATFASDGALQGFW--GIAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGNYDEATME   87 (133)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--EEEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHhhccCCcEEEcCC--cccCCHHHHHHHHHHHhhhcccccceecCCeEEEEcCCEEEEE
Confidence            35789999999999999999999999999999643  368899999999998876654345545544 333333456666


Q ss_pred             EEEEe
Q 030318          164 SHFLS  168 (179)
Q Consensus       164 w~lew  168 (179)
                      |.+..
T Consensus        88 ~~~~~   92 (133)
T d2rgqa1          88 SYLTV   92 (133)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66543

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.35  E-value=9.5e-07  Score=61.66  Aligned_cols=82  Identities=13%  Similarity=0.041  Sum_probs=57.4

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHH-HHHHHHhcCCCeEEEEEee---ecCCCce
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDF-FKKFSDSISSDLQFVIDDI---SAEDSSA  159 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~f-f~~~~~afp~dl~~~I~ev---~egD~~a  159 (179)
                      ....+++++|++|++++|.+++.+||+||+++..++  +...|++++++. +......++ ..++++.++   ..||.-.
T Consensus         3 ~a~~~v~~~~~~A~~~~D~~~~~~l~a~D~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~v~~~gd~A~   79 (121)
T d3bb9a1           3 SAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGG--KVERSLTEYANHHMLADMAYLK-GLTITPKEHQITITGDIAI   79 (121)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETT--EEECSHHHHHHTHHHHHHHHHH-TEEEEEEEEEEEEETTEEE
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEEeCC--CccCcHHHHHHHHHhhhhhccc-CceEEEEEEEEEEcCCeeE
Confidence            456789999999999999999999999999988543  346798888764 444444443 567777663   2455333


Q ss_pred             EEEEEEEEe
Q 030318          160 NGKESHFLS  168 (179)
Q Consensus       160 V~v~w~lew  168 (179)
                      +..++++.-
T Consensus        80 ~~~~~~~~~   88 (121)
T d3bb9a1          80 STSISHAQG   88 (121)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            333554443

>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.4e-06  Score=60.06  Aligned_cols=67  Identities=10%  Similarity=0.053  Sum_probs=53.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC-CCCccCHHHHHHHHHHHHHhcCCCeEEEEEe
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-PRPFLGRKATLDFFKKFSDSISSDLQFVIDD  151 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~-~~Pi~Greav~~ff~~~~~afp~dl~~~I~e  151 (179)
                      ...+++++|++||+++|++++.++|+||+++-.+.. +....|.++++.+++.++...+...++.+.+
T Consensus        12 eI~~l~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T d2ux0a1          12 EIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILN   79 (135)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhCcCCCcEEEeccCCceechHHHHHHHHHHHhccCCcccEEEecc
Confidence            356788999999999999999999999999986533 4456799999999999887666556666544

>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro3538
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=98.05  E-value=6.1e-06  Score=60.21  Aligned_cols=82  Identities=11%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             cHHHHHHHHHHHHhC-CCHHHHHhhhccCceEeeCCC-CCCccCHHHHHHHHHHHHHhcCCCeEEEEEe-eecCCCceEE
Q 030318           85 GGAVVVRRFYAGING-RDLASVEELIADDCVYEDLIF-PRPFLGRKATLDFFKKFSDSISSDLQFVIDD-ISAEDSSANG  161 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na-~D~dal~eLfApD~v~~dp~~-~~Pi~Greav~~ff~~~~~afp~dl~~~I~e-v~egD~~aV~  161 (179)
                      ..++++.+|..+++. +|++.+.+||+||+++.-+++ +.+..|++++++++...+..++.-.|+.... |...++..+.
T Consensus        10 aI~~L~~~Y~~~~D~~~d~d~~~~lFt~D~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~H~~~n~~i~~~~~~~A~   89 (144)
T d3b8la1          10 AIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGIGLTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEGDTAS   89 (144)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGGTCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECSSEEE
T ss_pred             HHHHHHHHHHHHHCcCCCHHHHHhhccCCEEEEecCccCcccccHHHHHHHHHHHhccCccEEEEeecccceecCCCEEE
Confidence            356789999999976 799999999999999975444 3467899999999999988776445555544 3222334555


Q ss_pred             EEEEE
Q 030318          162 KESHF  166 (179)
Q Consensus       162 v~w~l  166 (179)
                      ++|.+
T Consensus        90 ~~~~~   94 (144)
T d3b8la1          90 MRAYV   94 (144)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>d3ef8a1 d.17.4.28 (A:1-149) Uncharacterized protein Saro1465 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro1465
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=97.98  E-value=5.1e-06  Score=60.70  Aligned_cols=79  Identities=9%  Similarity=0.010  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCceEEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSANGKE  163 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~--egD~~aV~v~  163 (179)
                      -++++.+|..+++.+|++.+.+||+||+++...+.. +..|++++++++...+..++...|+....+.  .++ ..+.++
T Consensus        12 I~~l~~~Y~~~~D~~d~~~~~~lFt~Da~~~~~~~~-~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~v~~~~~-~~a~~~   89 (149)
T d3ef8a1          12 IERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPNF-GATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSE-TEANVR   89 (149)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETTE-EEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEET-TEEEEE
T ss_pred             HHHHHHHHHHHHcCCCHHHHHhhCCCceEEEEecCc-ccccHHHHHHHHHHHhccCCeEEEEecCceEEecCC-ceeEEE
Confidence            467888999999999999999999999999754444 5889999999999988877534444433322  233 355555


Q ss_pred             EEE
Q 030318          164 SHF  166 (179)
Q Consensus       164 w~l  166 (179)
                      |.+
T Consensus        90 ~~~   92 (149)
T d3ef8a1          90 SVV   92 (149)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d3ejva1 d.17.4.28 (A:2-160) Uncharacterized protein Saro2766 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro2766
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=97.88  E-value=9.5e-06  Score=60.39  Aligned_cols=80  Identities=16%  Similarity=0.099  Sum_probs=56.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCC-------CCCccCHHHHHHHHHHHHHhcCC---CeEEEEEeee-
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-------PRPFLGRKATLDFFKKFSDSISS---DLQFVIDDIS-  153 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~-------~~Pi~Greav~~ff~~~~~afp~---dl~~~I~ev~-  153 (179)
                      .-.+++.+|..+++.+|++.+.+||+||+++.-.++       .+++.|+++++++++......+.   ..|+.-..++ 
T Consensus         7 aI~~l~~rY~~~~D~~d~d~~~~lFteDa~~~~~~~~g~~~~~~~~~~Gr~~i~~~~~~~~~~~~~~~~~~H~~~n~~I~   86 (159)
T d3ejva1           7 IILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPIIV   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHhhcCCCeEEEEecCCCCcccccchhhhHHHHHHHHHhhhhccCccceeEeccCCeEEE
Confidence            356889999999999999999999999999863222       13589999999999988654432   1244444433 


Q ss_pred             -cCCCceEEEEEEE
Q 030318          154 -AEDSSANGKESHF  166 (179)
Q Consensus       154 -egD~~aV~v~w~l  166 (179)
                       +||  .+.++|++
T Consensus        87 v~gd--~A~~~~~~   98 (159)
T d3ejva1          87 IEGD--HAVLDAQF   98 (159)
T ss_dssp             EETT--EEEEEEEE
T ss_pred             EeCC--eEEEEEEE
Confidence             454  55556654

>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rv3472-like
domain: Uncharacterized protein Rv3472
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=3.7e-05  Score=58.23  Aligned_cols=76  Identities=16%  Similarity=0.116  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeee--cCCCceEEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSANGKE  163 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~--egD~~aV~v~  163 (179)
                      -++++.+|..+++++|++.+.++|+||++|.-++  ++..|++++.++++.+.... .-.|+....++  .||  ...++
T Consensus        14 I~~Li~~Ya~aiD~~d~d~~~~lFteDa~~~~~~--~~~~g~~~I~~~~~~~~~~~-~~~H~~~n~~i~i~gd--~A~~~   88 (167)
T d2chca1          14 IQALCARYCLTINTQDGEGWAGCFTEDGAFEFDG--WVIRGRPALREYADAHARVV-RGRHLTTDLLYEVDGD--VATGR   88 (167)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETT--EEEESHHHHHHHHHHHHHHC-CCCEEEEEEEEEEETT--EEEEE
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHhccCCeEEEeCC--cccccHHHHHHHHHHhcccc-ceEEEccccEEEecCC--EEEEE
Confidence            5789999999999999999999999999998643  36889999999988776543 34455444433  344  44455


Q ss_pred             EEE
Q 030318          164 SHF  166 (179)
Q Consensus       164 w~l  166 (179)
                      |.+
T Consensus        89 ~~~   91 (167)
T d2chca1          89 SAS   91 (167)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=97.48  E-value=0.00012  Score=50.62  Aligned_cols=48  Identities=15%  Similarity=0.257  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHH
Q 030318           87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKK  136 (179)
Q Consensus        87 ~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~  136 (179)
                      .++.++|++|++++|++++.+|++||+++..+. + +..+++++.+.+..
T Consensus         8 ~~~~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~-G-~~~~~~~~i~~~~~   55 (122)
T d2r4ia1           8 LDCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS-G-ETVTKETDIAAYSS   55 (122)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT-S-CEECHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHhhhcccEEEEecc-c-eeccHHHHHHHHhc
Confidence            467899999999999999999999999998653 3 45688887776643

>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.40  E-value=4.8e-05  Score=52.36  Aligned_cols=53  Identities=11%  Similarity=0.033  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC-CCccCHHHHHHHHHHHH
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP-RPFLGRKATLDFFKKFS  138 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~-~Pi~Greav~~ff~~~~  138 (179)
                      -.+++..|++||+.+|++++.++|+||+.+-.+... .-..|.+.++.++....
T Consensus        11 I~~~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (129)
T d2f86b1          11 IVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRFYFDGNR   64 (129)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCCEETTHHHHTTSSSCS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhcCCceEEEecCCCceeehHHHHHHHHhhcc
Confidence            457789999999999999999999999987644332 22567777666655543

>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PFL3262-like
domain: Hypothetical protein PFL3262
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.39  E-value=0.00043  Score=52.55  Aligned_cols=84  Identities=12%  Similarity=0.075  Sum_probs=65.1

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      ..+.+-|+.--++||.+|.+.+.--|++|.+|.+-.  +=+.|+++|.+|+.+=.+.= .+.+.. .++ +-. ...++|
T Consensus        13 etA~~KVr~AEdaWNsrdP~~ValaYT~Ds~WRNR~--eF~~GR~~I~~FL~~KW~rE-~dYrL~-KELwaf~-~NRIAV   87 (155)
T d2imja1          13 ESAIEKIRLAEDGWNSRDPERVSLAYTLDTQWRNRA--EFAHNREEAKAFLTRKWAKE-LDYRLI-KELWAFT-DNRIAV   87 (155)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETT--EEECSHHHHHHHHHHHHHHS-EEEEEE-EEEEEEE-TTEEEE
T ss_pred             HHHHHHHHHHHHhhccCCchheeeccCCCCcCCCch--hhhCCHHHHHHHHHHHHHHh-hhHHHH-HHHhhcC-CCeEEE
Confidence            457778888889999999999999999999999743  23789999999999887542 244443 443 323 259999


Q ss_pred             EEEEEeCCce
Q 030318          163 ESHFLSAKVA  172 (179)
Q Consensus       163 ~w~lew~~~~  172 (179)
                      +..-||.+.+
T Consensus        88 rF~YEw~D~~   97 (155)
T d2imja1          88 RYAYEWHDDS   97 (155)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEEcCC
Confidence            9999998865

>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro3722
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=97.34  E-value=0.00027  Score=51.21  Aligned_cols=55  Identities=18%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHh
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDS  140 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~a  140 (179)
                      .-.+++.+|..+++.+|++.+.++|+||+++.-+..+ +..|++++.+++......
T Consensus        19 aI~~l~~~y~~~~D~~d~~~~~~lFt~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~   73 (153)
T d2rfra1          19 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVGFA-TAKGRAAIAALIDGQTHR   73 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTSC-CEESHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHhhccCCEEEEeeccc-cccccchHHHHHHHHHhh
Confidence            3567888999999999999999999999999865555 688999999888777543

>d3ebya1 d.17.4.4 (A:6-162) Putative hydroxylase subunit Saro3860 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Putative hydroxylase subunit Saro3860
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=96.72  E-value=0.0012  Score=47.77  Aligned_cols=56  Identities=13%  Similarity=0.108  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCC----------ccCHHHHHHHHHHHHHhc
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP----------FLGRKATLDFFKKFSDSI  141 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~P----------i~Greav~~ff~~~~~af  141 (179)
                      -++++.+|..++..+|++.+.+||+||++|.-+..+.+          ..|++.+..++..+....
T Consensus        10 I~~l~~~Ya~~lD~~~~~~~~~lFt~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   75 (157)
T d3ebya1          10 IDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKAN   75 (157)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHhcCCCeEEEccCCCCccccccceeEEechHHHHHHHHHHHhhcc
Confidence            45678888889999999999999999999875432211          258999999999887653

>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}

class: All alpha proteins
fold: Orange carotenoid protein, N-terminal domain
superfamily: Orange carotenoid protein, N-terminal domain
family: Orange carotenoid protein, N-terminal domain
domain: Orange carotenoid protein, N-terminal domain
species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]

Probab=96.63  E-value=2.9e-05  Score=60.53  Aligned_cols=27  Identities=7%  Similarity=0.073  Sum_probs=24.4

Q ss_pred             cccCCCCCcEEEeccccccccccccCC
Q 030318           46 RKRLAPLSKLRISSSENNRTAVDVASP   72 (179)
Q Consensus        46 ~~~l~~~qqi~v~~~~~~~~~~~v~~p   72 (179)
                      .|+||.+|||||+||.|++||||-++|
T Consensus       141 I~~Ldf~QQITvlR~~V~~MG~dp~~~  167 (174)
T d1m98a1         141 IQGIDPGQQITVLRNCVVDMGFDTSKL  167 (174)
T ss_dssp             HHHSCHHHHHHHHHHHHHTCSCCCTTC
T ss_pred             HHcCChhhhHHHHHHHHHHcCCCCCCC
Confidence            399999999999999999999986665

>d3blza1 d.17.4.14 (A:3-126) Uncharacterized protein Sbal0622 {Shewanella baltica [TaxId: 62322]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Sbal0622-like
domain: Uncharacterized protein Sbal0622
species: Shewanella baltica [TaxId: 62322]

Probab=96.60  E-value=0.0044  Score=43.45  Aligned_cols=79  Identities=9%  Similarity=0.044  Sum_probs=48.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCc--cCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPF--LGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANG  161 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi--~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~  161 (179)
                      .-.+++.+|++++..+|.+.+.++|+||+++.-....+.+  .+.+.+.+++........ ..+..+..+ +.||  ...
T Consensus        10 aI~~li~~Y~~~~d~~D~~~l~~~F~~da~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~I~i~gd--~A~   86 (124)
T d3blza1          10 AIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTGGPIQGLFDVIDNVFHPSP-EAKAAIARIDIVGT--AAS   86 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEEEETHHHHHHHHHTCCCCT-TCEEEEEEEEEETT--EEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeecCCCcceeccHHHHHHHHhhcCCCCc-eeEEEEEEEEEcCC--ceE
Confidence            4578999999999999999999999999998632222222  234556666555433332 233333333 2455  333


Q ss_pred             EEEEE
Q 030318          162 KESHF  166 (179)
Q Consensus       162 v~w~l  166 (179)
                      +.+..
T Consensus        87 ~~~~~   91 (124)
T d3blza1          87 ARIDT   91 (124)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Exig0174-like
domain: Uncharacterized protein Exig0174
species: Exiguobacterium sibiricum 255-15 [TaxId: 262543]

Probab=96.05  E-value=0.0048  Score=44.59  Aligned_cols=75  Identities=12%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             HHHHHHHHH--h---CCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-ecCCCceEEE
Q 030318           89 VVRRFYAGI--N---GRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-SAEDSSANGK  162 (179)
Q Consensus        89 vVrrfyeA~--N---a~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-~egD~~aV~v  162 (179)
                      ++.+|+...  .   ..+++.|..||++|+++. .. +....|++++..||+.++..=. +++.-.+.. ..+++..+..
T Consensus         2 ~Ld~YF~LsD~A~~d~~~ld~Li~LFSdd~~i~-an-G~~~~G~~ai~sFf~~FF~~N~-e~KHlwd~~~~~E~~dt~et   78 (118)
T d3er7a1           2 TLDRYFDLFDASRTDEKAFDDLISLFSDEITFV-LN-GQEQHGIDAWKQFVRMVFTANQ-DIKHMYAGWVPSETGDTMET   78 (118)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEE-ET-TEEEESHHHHHHHHHHHHHHEE-EEEEEECCCEECSSTTCEEE
T ss_pred             chHHhhhhHhhccCcHHHHHHHHHHhccCeEEE-ec-CccccChHHHHHHHHHHHhcch-HHHHHhccceeccccCeeee
Confidence            355666643  2   336788889999999999 33 4457899999999999997643 566665542 3344457777


Q ss_pred             EEEE
Q 030318          163 ESHF  166 (179)
Q Consensus       163 ~w~l  166 (179)
                      +|.+
T Consensus        79 ~WaV   82 (118)
T d3er7a1          79 RWAV   82 (118)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            7765

>d3e99a1 d.17.4.4 (A:1-163) Benzoate 1,2-dioxygenase beta subunit BenB {Burkholderia mallei [TaxId: 13373]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Benzoate 1,2-dioxygenase beta subunit BenB
species: Burkholderia mallei [TaxId: 13373]

Probab=95.82  E-value=0.0031  Score=45.36  Aligned_cols=41  Identities=7%  Similarity=-0.058  Sum_probs=34.0

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCc
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPF  124 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi  124 (179)
                      ..-++++-+|-.+++++|++.+.+||+||++|.-+..+.+.
T Consensus         7 ~eI~~ll~rya~~lD~~d~d~~~~lFteDa~~~~~~~~~~~   47 (163)
T d3e99a1           7 ADIQAFLYRESRLLDDKAWDAWLDCYRADAVFWMPSWDDAD   47 (163)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEECCCC--
T ss_pred             HHHHHHHHHHHHHHcccCHHHHHHhcCCceEEEecCCCccc
Confidence            44678999999999999999999999999999876665443

>d1idpa_ d.17.4.1 (A:) Scytalone dehydratase {Fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Scytalone dehydratase
domain: Scytalone dehydratase
species: Fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.47  E-value=0.0033  Score=45.82  Aligned_cols=80  Identities=6%  Similarity=-0.045  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC---CCCCCccCHHHHHHHHHHHHHhcCC---CeEEEEEe-ee-cCCC
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDL---IFPRPFLGRKATLDFFKKFSDSISS---DLQFVIDD-IS-AEDS  157 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp---~~~~Pi~Greav~~ff~~~~~afp~---dl~~~I~e-v~-egD~  157 (179)
                      -++++.+|..+++.+|++.+.++|+||+++.-.   +......|++.+.+++.........   ..|+.-.. |. .|| 
T Consensus        11 I~~l~~~Ya~~~D~~d~d~l~~lf~eda~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~H~~~n~~I~~~~d-   89 (147)
T d1idpa_          11 LMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTRWEKVSE-   89 (147)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECHHHHSCEEEEEEHHHHHHHHHSTTTTCCTTEEECCEEEEEEEEEEET-
T ss_pred             HHHHHHHHHHHHccCCHHHHHhhcCCceEEeccccCCcccccchhhHHHHHhhchhhcccccceEEEEecCeEEEEcCC-
Confidence            568899999999999999999999999997411   1112345777777777653221111   12333323 32 343 


Q ss_pred             ceEEEEEEE
Q 030318          158 SANGKESHF  166 (179)
Q Consensus       158 ~aV~v~w~l  166 (179)
                      ..+..+|.+
T Consensus        90 ~~A~g~~y~   98 (147)
T d1idpa_          90 DEVIGYHQL   98 (147)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            466677765

>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: UBP3-associated protein BRE5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.036  Score=39.42  Aligned_cols=85  Identities=13%  Similarity=0.192  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC-------------CCccCHHHHHHHHHHHHHhcCCCeEEEEEe
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP-------------RPFLGRKATLDFFKKFSDSISSDLQFVIDD  151 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~-------------~Pi~Greav~~ff~~~~~afp~dl~~~I~e  151 (179)
                      ....-|..||+.++. +.+.|..+|+|+..+...+..             ....|+++|.+++..+-..++ +.+..+..
T Consensus         6 ig~~Fv~~YY~~ld~-~r~~L~~~Y~~~s~~s~~~~~~~~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~-~~~~~i~~   83 (139)
T d2qiya1           6 ICFAFLQNYYERMRT-DPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVR-SLKLKLDT   83 (139)
T ss_dssp             HHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHT-TEEEEEEE
T ss_pred             HHHHHHHHHHHHHhc-CHHHHHHhhcCCcEEEEcCCCcccccccchhhhhhccccHHHHHHHHHhcCcccc-ceEEeeee
Confidence            356789999999986 778999999999998543211             235799999999999877775 66766544


Q ss_pred             ee------cCCCceEEEEEEEEeCCc
Q 030318          152 IS------AEDSSANGKESHFLSAKV  171 (179)
Q Consensus       152 v~------egD~~aV~v~w~lew~~~  171 (179)
                      +.      .++...|.|...+..+++
T Consensus        84 ~d~~~~~~~~~~i~v~V~G~~~~~~~  109 (139)
T d2qiya1          84 IDFQYTGHLHKSILIMATGEMFWTGT  109 (139)
T ss_dssp             EEEEEESGGGCEEEEEEEEEEEETTC
T ss_pred             eeeeecccCCCEEEEEEeeEEecCCC
Confidence            31      233344445555544443

>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193 {Anabaena variabilis [TaxId: 1172]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ava4193-like
domain: Uncharacterized protein Ava4193
species: Anabaena variabilis [TaxId: 1172]

Probab=94.77  E-value=0.03  Score=40.39  Aligned_cols=84  Identities=11%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEeeecCCCceEEEEEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSANGKESH  165 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev~egD~~aV~v~w~  165 (179)
                      -.+++..|+.||..||+..+  -|+++..|-.|--+.|+.|.|+++.|+......+   ..+.|.+.+-+ +.+..-.|.
T Consensus         5 yheIi~qYf~aFetGdFS~V--QFS~n~qFlSPIr~~~~~G~e~v~~Fl~~V~tRv---aeVni~s~~ve-YPrAS~v~q   78 (128)
T d3ecfa1           5 YHEILKKYFLSFETGDFSQV--QFSCNLEFLSPISGNTLKGTEEVIPFLKGVTTRV---AEVNIMSTTVE-YPRASGVWQ   78 (128)
T ss_dssp             HHHHHHHHHHHHHHCCCTTS--CEEEEEEECCTTCSSCEESHHHHHHHHHHHHTTE---EEEEEEEEEEE-TTEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCCeeeE--EeccCceEeccccCCCccChHHHHHHhhhhhhhh---eeeeeeeeeec-ccCccceEE
Confidence            35789999999999999876  4899999987777889999999999999987554   36666665432 677788888


Q ss_pred             EEeCCceeee
Q 030318          166 FLSAKVAAFI  175 (179)
Q Consensus       166 lew~~~~~~~  175 (179)
                      |...+-.-|+
T Consensus        79 ~rTTKG~ly~   88 (128)
T d3ecfa1          79 MRTTKGTLYT   88 (128)
T ss_dssp             EEETTSCEEE
T ss_pred             EEecCceEEE
Confidence            8876655443

>d1wqlb1 d.17.4.4 (B:5-186) Small subunit of cumene dioxygenase CumA2 {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Small subunit of cumene dioxygenase CumA2
species: Pseudomonas fluorescens [TaxId: 294]

Probab=94.46  E-value=0.0082  Score=45.19  Aligned_cols=38  Identities=13%  Similarity=-0.022  Sum_probs=31.6

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP  121 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~  121 (179)
                      ...++.+-++..+++++|++...+||++||+|.-|+.+
T Consensus        19 ~eIe~fl~r~A~lLD~~~~d~w~~lFt~Da~y~vp~~~   56 (182)
T d1wqlb1          19 NAVEQFYYREAQLLDYQNYEAWLALLTQDIQYWMPIRT   56 (182)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTBCTTCCEEEECBC
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEecCCC
Confidence            44566677777789999999999999999999877654

>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Cryptosporidium parvum [TaxId: 5807]

Probab=94.36  E-value=0.057  Score=37.78  Aligned_cols=80  Identities=15%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee----ecCCCceEE
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI----SAEDSSANG  161 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev----~egD~~aV~  161 (179)
                      .++-|..||..++. +.+.|..+|.++..+...+  .++.|++++.+.+..+-  + ...++.|..+    ..+++.-|.
T Consensus         5 g~~Fv~~YY~~~~~-~r~~l~~~Y~~~s~l~~~g--~~~~G~~~I~~~l~~l~--~-~~~~~~i~~~D~Qp~~~~~ili~   78 (117)
T d1zo2a1           5 GKQFVQHYYQTFQT-NRPALGGLYGPQSMLTWED--TQFQGQANIVNKFNSLN--F-QRVQFEITRVDCQPSPNNGSIVF   78 (117)
T ss_dssp             HHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEETT--EEEESHHHHHHHHHHHC--C-SCEEEEEEEEEEEECTBSSEEEE
T ss_pred             HHHHHHHHHHHHhc-CHHHHHhhccCCcEEEECC--CcccCHHHHHHHHHhCC--C-ccceEEEeeEEEEEcCCCCEEEE
Confidence            56789999999986 7789999999999987543  45889999999888752  2 2567777653    234556677


Q ss_pred             EEEEEEeCCc
Q 030318          162 KESHFLSAKV  171 (179)
Q Consensus       162 v~w~lew~~~  171 (179)
                      |...+...+.
T Consensus        79 V~G~~~~~~~   88 (117)
T d1zo2a1          79 VTGDVRIDDG   88 (117)
T ss_dssp             EEEEEEETTC
T ss_pred             EEEEEEeCCC
Confidence            7777666554

>d1ulib_ d.17.4.4 (B:) Biphenyl dioxygenase small subunit BphA2 {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Biphenyl dioxygenase small subunit BphA2
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=93.79  E-value=0.022  Score=42.41  Aligned_cols=38  Identities=18%  Similarity=-0.008  Sum_probs=32.1

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCC
Q 030318           84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP  121 (179)
Q Consensus        84 ~~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~  121 (179)
                      ...++++-+|..+++.+|++...+||++||+|+-|+.+
T Consensus        14 ~eI~~~l~r~A~~LD~~~~d~w~~lFteD~~y~~~~~~   51 (177)
T d1ulib_          14 HEIEQFYYWEAKLLNDRRFQEWFDLLAEDIHYFMPIRT   51 (177)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEEEECBC
T ss_pred             HHHHHHHHHHHHHhcccCHHHHHHhhcCCEEEEecCCC
Confidence            44667788888899999999999999999999866544

>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.18  E-value=0.081  Score=37.57  Aligned_cols=81  Identities=11%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee----ecCCCceE
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI----SAEDSSAN  160 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev----~egD~~aV  160 (179)
                      ..++-|..||..++. +.+.|..+|.++..+...+  .++.|+++|.+++..+-  + .+.++.|..+    ..++..-|
T Consensus         8 ig~~Fv~~YY~~l~~-~r~~L~~~Y~~~S~l~~~g--~~~~G~~~I~~~l~~lp--~-~~~~~~i~~~D~Q~~~~~~ili   81 (125)
T d1gy6a_           8 IGSSFIQHYYQLFDN-DRTQLGAIYIDASCLTWEG--QQFQGKAAIVEKLSSLP--F-QKIQHSITAQDHQPTPDSCIIS   81 (125)
T ss_dssp             HHHHHHHHHHHHHHH-HGGGGGGGEEEEEEEEETT--EEEESHHHHHHHHHHCS--C-SCEEEEEEEEEEEECTTSCEEE
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHcCCCcEEEECC--ccccCHHHHHHHHHcCC--C-cccEEEEeEEEEEEcCCCCEEE
Confidence            467889999999986 6899999999999987543  45899999998887552  1 2566776654    23444566


Q ss_pred             EEEEEEEeCCc
Q 030318          161 GKESHFLSAKV  171 (179)
Q Consensus       161 ~v~w~lew~~~  171 (179)
                      .|...+..++.
T Consensus        82 ~V~G~~~~~~~   92 (125)
T d1gy6a_          82 MVVGQLKADED   92 (125)
T ss_dssp             EEEEEEEETTS
T ss_pred             EEEEEEEECCC
Confidence            66666655543

>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PA1314-like
domain: Hypothetical protein PA1314
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.85  E-value=0.16  Score=36.72  Aligned_cols=48  Identities=19%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             HHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee
Q 030318          102 LASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI  152 (179)
Q Consensus       102 ~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev  152 (179)
                      ++.+.+.|+||+..--| -+ ...+++++.++|+...++-| ++++.|+++
T Consensus        27 l~~L~a~f~p~FsMV~~-~G-~~l~~~~~~~~f~~~~G~rp-Gl~I~id~~   74 (126)
T d1tp6a_          27 LDALMARFAEDFSMVTP-HG-VVLDKTALGELFRSKGGTRP-GLRIEIDGE   74 (126)
T ss_dssp             HHHHHTTEEEEEEEECT-TS-CEEEHHHHHHHHHHHTTCST-TCEEEEEEE
T ss_pred             HHHHHHhcCCCcEEECC-CC-eEcCHHHHHHHHHHhcCCCC-ccEEEEEEE
Confidence            79999999999998744 33 47799999999999998776 799999885

>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-related export protein 1 (p15)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.25  Score=35.50  Aligned_cols=79  Identities=10%  Similarity=0.091  Sum_probs=55.4

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee-----ec---C-
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI-----SA---E-  155 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev-----~e---g-  155 (179)
                      ..++.|+.||+.++. +.+.|..+|.++..+...  +.++.|+++|.+++..    +| ..+..+..+     ..   + 
T Consensus        15 ~a~~FV~~YY~~l~~-~r~~L~~fY~~~S~l~~~--g~~~~G~~~I~~~l~~----lp-~~~~~i~~~D~q~~~~~~~~~   86 (139)
T d1jkga_          15 AAEEFVNVYYTTMDK-RRRLLSRLYMGTATLVWN--GNAVSGQESLSEFFEM----LP-SSEFQISVVDCQPVHDEATPS   86 (139)
T ss_dssp             HHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEET--TEEEESHHHHHHHHHH----SC-CEEEEEEEEEEEECCTTTSTT
T ss_pred             HHHHHHHHHHHHHHh-CHHHHHHHhCCCceEEEC--CeeccCHHHHHHHHHh----CC-CceeEEEEEEEEEcCcccccC
Confidence            467899999999984 789999999999998754  3468999999998875    34 234443332     11   1 


Q ss_pred             -CCceEEEEEEEEeCCc
Q 030318          156 -DSSANGKESHFLSAKV  171 (179)
Q Consensus       156 -D~~aV~v~w~lew~~~  171 (179)
                       ++.-|.|...+..++.
T Consensus        87 ~~~ilI~V~G~v~~~~~  103 (139)
T d1jkga_          87 QTTVLVVICGSVKFEGN  103 (139)
T ss_dssp             CCEEEEEEEEEEEETTS
T ss_pred             CCeEEEEEEEEEEcCCC
Confidence             2346666677766654

>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.97  E-value=0.086  Score=37.11  Aligned_cols=79  Identities=10%  Similarity=0.131  Sum_probs=55.1

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcCCCeEEEEEee----e-cCCCce
Q 030318           85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI----S-AEDSSA  159 (179)
Q Consensus        85 ~~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp~dl~~~I~ev----~-egD~~a  159 (179)
                      ..++-|..||+.++. +.+.|..+|.++..+...  +.++.|+++|.+.+..+-  + .+.+..|..+    . .++..-
T Consensus         5 Ia~~Fv~~YY~~l~~-~r~~L~~~Y~~~s~l~~~--g~~~~G~~~I~~~l~~lp--~-~~~~~~i~~~D~Qp~~~~~~il   78 (121)
T d1gy7a_           5 LAQNFTQFYYNQFDT-DRSQLGNLYRNESMLTFE--TSQLQGAKDIVEKLVSLP--F-QKVQHRITTLDAQPASPYGDVL   78 (121)
T ss_dssp             HHHHHHHHHHHHHHH-HGGGGGGGEEEEEEEEET--TEEEESHHHHHHHHHHSC--C-SCEEEEEEEEEEEESSTTSCEE
T ss_pred             HHHHHHHHHHHHHhc-CHHHHHHHcCCCcEEEEC--CeEecCHHHHHHHHHhCC--C-cccEEEEeeEeeEEccCCCeEE
Confidence            356789999999985 778999999999998753  346899999999888662  2 2566666553    1 233345


Q ss_pred             EEEEEEEEeC
Q 030318          160 NGKESHFLSA  169 (179)
Q Consensus       160 V~v~w~lew~  169 (179)
                      |.|...+..+
T Consensus        79 i~V~G~~~~~   88 (121)
T d1gy7a_          79 VMITGDLLID   88 (121)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEEEC
Confidence            5555555443

>d2b1xb1 d.17.4.4 (B:513-679) Naphthalene 1,2-dioxygenase beta subunit {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Naphthalene 1,2-dioxygenase beta subunit
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=90.90  E-value=0.068  Score=38.99  Aligned_cols=33  Identities=9%  Similarity=-0.079  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHhhhccCceEeeC
Q 030318           86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDL  118 (179)
Q Consensus        86 ~~~vVrrfyeA~Na~D~dal~eLfApD~v~~dp  118 (179)
                      .++.+-+|..++..+|++.+.+||+||++|.-|
T Consensus        10 I~~~l~r~a~lLD~~~~d~w~~lFt~Da~y~i~   42 (167)
T d2b1xb1          10 ITEWLYMEAELLDAGKYREWLALVTEDLSYVVP   42 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCcCHHHHHHhccCCEEEEec
Confidence            456777778899999999999999999999754

>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Penicillin binding protein 2a (PBP2A), N-terminal domain
domain: Penicillin binding protein 2a (PBP2A), N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.53  E-value=0.79  Score=32.05  Aligned_cols=74  Identities=9%  Similarity=0.043  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHhhhccCceEeeCCCCCCccCHHHHHHHHHHHHHhcC-CCeEEEEEeeecCCCceEEEEEEE
Q 030318           88 VVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS-SDLQFVIDDISAEDSSANGKESHF  166 (179)
Q Consensus        88 ~vVrrfyeA~Na~D~dal~eLfApD~v~~dp~~~~Pi~Greav~~ff~~~~~afp-~dl~~~I~ev~egD~~aV~v~w~l  166 (179)
                      +.+.+|+++|+.+|++.+-++++.+.-        --.+++.+.+-.+..++++. .++++....+...+...+.+.+++
T Consensus         2 ~~~~~y~~~~~~~~y~~mY~~ls~~sk--------~~~s~~ef~~R~~~Iyegi~a~~l~v~~~~v~~~~~~~~~v~y~~   73 (112)
T d1vqqa1           2 KEINNTIDAIEDKNFKQVYKDSSYISK--------SDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQY   73 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTBCHHHH--------HHHCHHHHHTHHHHHHHHHTCCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             hhHHHHHHHHhhccHHHHHHHhCHHHH--------HhcCHHHHHHHHHHHHcccCccceEEEeeeeeecCCCeEEEEEEE
Confidence            568899999999999999988887652        12477777777777776664 478888877743222355555555


Q ss_pred             EeC
Q 030318          167 LSA  169 (179)
Q Consensus       167 ew~  169 (179)
                      .|.
T Consensus        74 ~m~   76 (112)
T d1vqqa1          74 KIK   76 (112)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554