Citrus Sinensis ID: 030328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MAALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEcccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccEcEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MAALSFLGFLVLLLPLTLLLLLYLIvrpkpvripikdrhvfitggSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEvatysadvrdFDAVKTaldeagpvdvLVVNqgvfvpgelevqsldEVRLMIDVNIIGSFHMIKAALPLIkkrqnggpasIALMSSQAGQVG
Flexible Loop (DISEMBL)
MAALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPgelevqsldeVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG
Low Complexity Region (SEG)
MAAlsflgflvlllpltlllllylIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG
Disordered region (IsUnstruct)
***LSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA***********SIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK*********************
Disordered Region (DISOPRED)
*AALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV*
Disordered Region (DISEMBL)
MAALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLA***********VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG
Disordered Region (DISPRO)
**ALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q6GV12	332	3-ketodihydrosphingosine	yes	no	0.877	0.472	0.346	2e-18
Q2KIJ5	331	3-ketodihydrosphingosine	yes	no	0.865	0.468	0.325	3e-18
Q06136	332	3-ketodihydrosphingosine	yes	no	0.837	0.451	0.349	7e-18
P54554	259	Uncharacterized oxidoredu	yes	no	0.787	0.544	0.319	1e-12
Q5HLD8	230	Uncharacterized oxidoredu	yes	no	0.759	0.591	0.307	1e-12
Q8CN40	230	Uncharacterized oxidoredu	yes	no	0.759	0.591	0.307	1e-12
Q49WS9	246	Uncharacterized oxidoredu	no	no	0.770	0.560	0.358	1e-12
O00058	256	Probable NADP-dependent m	N/A	no	0.670	0.468	0.338	3e-12
Q7Q732	317	Dehydrogenase/reductase S	no	no	0.882	0.498	0.321	4e-11
Q92EK7	248	Uncharacterized oxidoredu	no	no	0.776	0.560	0.351	5e-11

>sp|Q6GV12|KDSR_MOUSE 3-ketodihydrosphingosine reductase OS=Mus musculus GN=Kdsr PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 103/173 (59%), Gaps = 16/173 (9%)

Query: 18  LLLLLYLI---VRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL 74
            +LLLY++   + PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL
Sbjct: 12  FVLLLYMVSPLISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKL 69

Query: 75  EEAKQSIQLATGIE---VATYSADV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGE 126
            +AK+ I+  +  +   V   S DV +D++ V+  + +A    GPVD+LV   G  + G+
Sbjct: 70  LQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGK 129

Query: 127 LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            E   +     ++ +N +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct: 130 FEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVG---RIVFVSSQAGQLG 179

Catalyzes the reduction of 3-ketodihydrosphingosine (KDS) to dihydrosphingosine (DHS).
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 2

>sp|Q2KIJ5|KDSR_BOVIN 3-ketodihydrosphingosine reductase OS=Bos taurus GN=KDSR PE=2 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 102/175 (58%), Gaps = 20/175 (11%)

Query: 18  LLLLLYLI---VRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL 74
            +LLLY++   + PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL
Sbjct: 12  FVLLLYMVSPLISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKL 69

Query: 75  EEAKQSIQ----------LATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVP 124
            +AK+ I+          L   ++V+   + V   + +K A ++ GPVD+LV   G+ + 
Sbjct: 70  LQAKKEIEKHSINDKQVVLCISVDVSQDYSQVE--NVIKQAQEKLGPVDMLVNCAGMSLS 127

Query: 125 GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           G+ E   +     ++ +N +GS +  +A +  +K+R+ G    +  +SSQAGQ+G
Sbjct: 128 GKFEDLEVSTFERLMSINYLGSVYPSRAVIATMKERRMG---RVVFVSSQAGQLG 179

Catalyzes the reduction of 3-ketodihydrosphingosine (KDS) to dihydrosphingosine (DHS).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 2

>sp|Q06136|KDSR_HUMAN 3-ketodihydrosphingosine reductase OS=Homo sapiens GN=KDSR PE=1 SV=1

 Score = 90.1 bits (222), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 99/163 (60%), Gaps = 13/163 (7%)

Query: 25  IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
           ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I++ 
Sbjct: 22  LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMH 79

Query: 85  TGIE---VATYSADV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVR 136
           +  +   V   S DV +D++ V+  + +A    GPVD+LV   G+ V G+ E   +    
Sbjct: 80  SINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEVSTFE 139

Query: 137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            ++ +N +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct: 140 RLMSINYLGSVYPSRAVITTMKERRVG---RIVFVSSQAGQLG 179

Catalyzes the reduction of 3-ketodihydrosphingosine (KDS) to dihydrosphingosine (DHS).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 2

>sp|P54554|YQJQ_BACSU Uncharacterized oxidoreductase YqjQ OS=Bacillus subtilis (strain 168) GN=yqjQ PE=3 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           I  + ++ITG S G+G  +A+  A EGA V + AR  ++L E K+ I      +   +  
Sbjct: 4   IAGKRIWITGASGGLGERIAYLCAAEGAHVLLSARREDRLIEIKRKITEEWSGQCEIFPL 63

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           DV   + +    D+ G +DVL+ N G  +   +   +LD+++ M DVN+ G     KA L
Sbjct: 64  DVGRLEDIARVRDQIGSIDVLINNAGFGIFETVLDSTLDDMKAMFDVNVFGLIACTKAVL 123

Query: 155 PLIKKRQNGGPASIALMSSQAGQV 178
           P + +++ G   +IA   SQAG++
Sbjct: 124 PQMLEQKKGHIINIA---SQAGKI 144

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5HLD8|Y2049_STAEQ Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 84/140 (60%), Gaps = 4/140 (2%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K++   +TG SSGIG A+A + +++GA + ++ R+ ++L E  Q  QL T  +V +   
Sbjct: 4   VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQ--QLNTPAKVVSADV 61

Query: 95  DVRDF--DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            V+    D +K  +D  G +D++V + G  +  ++   ++++   MIDVNI G+ H+++A
Sbjct: 62  TVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQA 121

Query: 153 ALPLIKKRQNGGPASIALMS 172
            LP + K+ +G   ++A +S
Sbjct: 122 TLPYLLKQSSGHIINLASVS 141

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8CN40|Y2036_STAES Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 84/140 (60%), Gaps = 4/140 (2%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K++   +TG SSGIG A+A + +++GA + ++ R+ ++L E  Q  QL T  +V +   
Sbjct: 4   VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQ--QLNTPAKVVSADV 61

Query: 95  DVRDF--DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            V+    D +K  +D  G +D++V + G  +  ++   ++++   MIDVNI G+ H+++A
Sbjct: 62  TVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQA 121

Query: 153 ALPLIKKRQNGGPASIALMS 172
            LP + K+ +G   ++A +S
Sbjct: 122 TLPYLLKQSSGHIINLASVS 141

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q49WS9|Y1627_STAS1 Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 10/148 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+ V ITG SSGIG    +  ++ GA++ + AR  ++LE+ +Q +   +   V+    
Sbjct: 4   VKDKVVVITGASSGIGEETVNLLSENGAKLVLGARRLDRLEKIQQKVGHDS---VSIKKT 60

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV   D V    +TA ++ G +DVL+ N G+     LE    DE   MIDVNI G  + I
Sbjct: 61  DVTKPDEVNALIETAYNDFGRIDVLINNAGLMPQSFLEKNKQDEWNQMIDVNIKGVLYGI 120

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQV 178
            A LP ++K+++G    I  ++S AG V
Sbjct: 121 GAVLPYMRKQKSG---HIINLASVAGHV 145

Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O00058|MTDH_UROFA Probable NADP-dependent mannitol dehydrogenase OS=Uromyces fabae GN=PIG8 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           I +KD+ + +TGG+ GIGLA++   A  GA V I+  S +  E+    I    G++   Y
Sbjct: 5   IDLKDQCIIVTGGNRGIGLAMSQACADAGAAVGIIYNSAKDAEDRASEISKKYGVKCKAY 64

Query: 93  SADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
             DV     VK       +E GPV  L+ N GV V  E    + D+   + DVN+ G F+
Sbjct: 65  QCDVGQQHKVKEVFKKINEELGPVTGLIANAGVSVVKEALQYNKDDFNKIFDVNVFGVFN 124

Query: 149 MIKA 152
             +A
Sbjct: 125 CAQA 128

May be involved in hexitol or pentitol metabolism.

Uromyces fabae (taxid: 55588)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 8

>sp|Q7Q732|DHRS7_ANOGA Dehydrogenase/reductase SDR family protein 7-like OS=Anopheles gambiae GN=AGAP005532 PE=3 SV=3

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 13/171 (7%)

Query: 9   FLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA 68
           FL + +P  +L LL ++   +  R  +  + V ITG SSG+G ALAH     G +V + A
Sbjct: 21  FLPIAIPGLVLKLLTMMKEQRNAR-HLNGKVVLITGASSGLGEALAHSFFLAGCKVVLAA 79

Query: 69  RSGEKLEEAKQSIQLATGIEVATYSA-----DVRDFDA----VKTALDEAGPVDVLVVNQ 119
           R  ++LE  ++ + L     V T+       D+ D ++    V++ L+  G +D+LV N 
Sbjct: 80  RRKDELERVRKDL-LELHATVPTHPPIILPLDLSDLNSIGGKVQSVLEIHGAIDILVNNG 138

Query: 120 GVFVPGELEVQSLD-EVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIA 169
           G+ V G+    ++D ++R+M+ VN  GS  + KA LP +  R+ G   SI+
Sbjct: 139 GISVRGDALSTAIDVDIRIML-VNYFGSVALTKACLPSMMARKEGRIVSIS 188

Putative oxidoreductase.

Anopheles gambiae (taxid: 7165)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q92EK7|Y452_LISIN Uncharacterized oxidoreductase Lin0452 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=lin0452 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 6/145 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           IK++ + ITG SSGIG A A   A++GA++ + AR  EKLE+  Q+I+ ++G  +   + 
Sbjct: 3   IKNKVIIITGASSGIGEATAILLAEKGAKLVLAARRVEKLEKIVQTIKASSGEAIFAKTD 62

Query: 95  DVRDFDA---VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
             +  D    V+ A++  G VD + +N G+     L     DE   MID+NI G  + I 
Sbjct: 63  VTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIA 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAG 176
           A LP    +++G    I   SS AG
Sbjct: 123 AVLPSFIAQKSG---HIIATSSVAG 144

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
297833348	326	short-chain dehydrogenase/reductase fami	1.0	0.549	0.690	2e-65
116781447	324	unknown [Picea sitchensis]	1.0	0.552	0.631	2e-64
7658344	327	unknown protein; 15741-13972 [Arabidopsi	1.0	0.547	0.701	5e-63
30679701	326	Rossmann-fold NAD(P)-binding domain-cont	1.0	0.549	0.701	6e-63
15239681	331	Rossmann-fold NAD(P)-binding domain-cont	0.916	0.495	0.713	2e-61
449515373	326	PREDICTED: 3-ketodihydrosphingosine redu	0.865	0.475	0.748	1e-60
255552283	456	short-chain dehydrogenase, putative [Ric	0.865	0.339	0.741	2e-60
449432720	326	PREDICTED: 3-ketodihydrosphingosine redu	0.865	0.475	0.748	2e-60
297807975	330	short-chain dehydrogenase/reductase fami	0.893	0.484	0.712	2e-60
356548983	326	PREDICTED: 3-ketodihydrosphingosine redu	0.888	0.487	0.679	9e-57

>gi|297833348|ref|XP_002884556.1| short-chain dehydrogenase/reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330396|gb|EFH60815.1| short-chain dehydrogenase/reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 156/181 (86%), Gaps = 2/181 (1%)

Query: 1   MAALS--FLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAA 58
           MAA+S  FL FL+ ++PL++L +L LIVRP+P++IPIK RHVFITGGSSGIGLALAH+AA
Sbjct: 1   MAAISPFFLLFLIPIVPLSILAILALIVRPRPIKIPIKSRHVFITGGSSGIGLALAHRAA 60

Query: 59  KEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN 118
            EGARVSILARS  KLEEAK+ IQLATG+EVAT+SADVRD+DAV  A+DE+GP+DVL+VN
Sbjct: 61  AEGARVSILARSAGKLEEAKKEIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVN 120

Query: 119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
           QGVF   EL   S ++V+  IDVN++GSF++IKAALP +K R++ GPASI+L+SSQAGQV
Sbjct: 121 QGVFTAKELVTHSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQV 180

Query: 179 G 179
           G
Sbjct: 181 G 181

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116781447|gb|ABK22103.1| unknown [Picea sitchensis]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 148/179 (82%)

Query: 1   MAALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKE 60
           MA  S L  L++  P+  ++ L+ IV+P+PV++PIK RHVFI+GGSSGIGLALAH AA+E
Sbjct: 1   MATHSLLWLLIISCPVLFIVFLWWIVQPRPVKVPIKGRHVFISGGSSGIGLALAHMAAQE 60

Query: 61  GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQG 120
           GARVSILAR+  +LEEAK+S++ +TG E+  YSADVR+F+ VK  +DEAGPVDVL+ NQG
Sbjct: 61  GARVSILARNASRLEEAKESVESSTGQEIKIYSADVRNFEEVKKVMDEAGPVDVLICNQG 120

Query: 121 VFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           VF P E E+QS+D +R M+D+N++G+ H+IKAALP +K+R+NG PASIALMSSQAGQVG
Sbjct: 121 VFTPQEFELQSVDTMRSMVDINLMGTIHLIKAALPYMKRRRNGPPASIALMSSQAGQVG 179

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7658344|gb|AAF66134.1| unknown protein; 15741-13972 [Arabidopsis thaliana] gi|27808568|gb|AAO24564.1| At3g06060 [Arabidopsis thaliana]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/181 (70%), Positives = 157/181 (86%), Gaps = 2/181 (1%)

Query: 1   MAALS--FLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAA 58
           MAA+S  FL FL+ ++PL+LL +L LIVRP+P++IPIK RH FITGGSSGIGLALAH+AA
Sbjct: 1   MAAISPLFLLFLIPIIPLSLLAILALIVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAA 60

Query: 59  KEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN 118
            EGARVSILARSG KLEEAK+SIQLATG+EVAT+SADVRD+DAV  A+DE+GP+DVL+VN
Sbjct: 61  SEGARVSILARSGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVN 120

Query: 119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
           QGVF   EL   S ++V+  IDVN++GSF++IKAALP +K R++ GPASI+L+SSQAGQV
Sbjct: 121 QGVFTAKELVKHSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQV 180

Query: 179 G 179
           G
Sbjct: 181 G 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679701|ref|NP_187257.2| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|110736583|dbj|BAF00257.1| hypothetical protein [Arabidopsis thaliana] gi|332640817|gb|AEE74338.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]

 Score =  245 bits (625), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 127/181 (70%), Positives = 157/181 (86%), Gaps = 2/181 (1%)

Query: 1   MAALS--FLGFLVLLLPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAA 58
           MAA+S  FL FL+ ++PL+LL +L LIVRP+P++IPIK RH FITGGSSGIGLALAH+AA
Sbjct: 1   MAAISPLFLLFLIPIIPLSLLAILALIVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAA 60

Query: 59  KEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN 118
            EGARVSILARSG KLEEAK+SIQLATG+EVAT+SADVRD+DAV  A+DE+GP+DVL+VN
Sbjct: 61  SEGARVSILARSGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVN 120

Query: 119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
           QGVF   EL   S ++V+  IDVN++GSF++IKAALP +K R++ GPASI+L+SSQAGQV
Sbjct: 121 QGVFTAKELVKHSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQV 180

Query: 179 G 179
           G
Sbjct: 181 G 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239681|ref|NP_197421.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|332005286|gb|AED92669.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/164 (71%), Positives = 142/164 (86%)

Query: 16  LTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE 75
           ++LL++L  IVRP+ V IPIK RHVFITGGSSGIGLALAH+A  EGA+VSILARS EKL 
Sbjct: 16  VSLLIILSFIVRPRSVTIPIKFRHVFITGGSSGIGLALAHRAVSEGAKVSILARSTEKLA 75

Query: 76  EAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEV 135
           EAK+SIQLATG+EVAT+SADVRD+DAV  A+DE+GP+DVL+VNQGVF+  ELE QS +EV
Sbjct: 76  EAKRSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFIGKELEKQSPEEV 135

Query: 136 RLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + MIDVN+ GSF++IKAALP +K R+  GPASI+L+SSQAGQ G
Sbjct: 136 KFMIDVNLTGSFNVIKAALPAMKAREGRGPASISLVSSQAGQAG 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515373|ref|XP_004164724.1| PREDICTED: 3-ketodihydrosphingosine reductase-like [Cucumis sativus]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/155 (74%), Positives = 137/155 (88%)

Query: 25  IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
           IVRP+PVRI +K RHVFITGGSSGIGLALAHQAA EGARVSILARS +KLEEAK +I+L+
Sbjct: 26  IVRPRPVRISLKSRHVFITGGSSGIGLALAHQAATEGARVSILARSLKKLEEAKDAIRLS 85

Query: 85  TGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
           TGI+VA Y+ADVRD+DA+  A+DEAGP+DVL+VNQGVFVP EL  Q LDEV+ M+DVN++
Sbjct: 86  TGIDVAVYAADVRDYDAILKAVDEAGPIDVLIVNQGVFVPQELAAQELDEVKFMLDVNLL 145

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           G+F+MIKAALP +K R +  PASIALMSSQAGQVG
Sbjct: 146 GTFNMIKAALPAMKNRVDRRPASIALMSSQAGQVG 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552283|ref|XP_002517186.1| short-chain dehydrogenase, putative [Ricinus communis] gi|223543821|gb|EEF45349.1| short-chain dehydrogenase, putative [Ricinus communis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 136/155 (87%)

Query: 25  IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
           IVRP+ V+IPIK+RHVFITGGSSGIGLALAH+A  EGARVSILARS +KLEEAK  I+L+
Sbjct: 28  IVRPRTVKIPIKNRHVFITGGSSGIGLALAHRAVSEGARVSILARSLDKLEEAKNYIRLS 87

Query: 85  TGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
           TG++VA + ADVRDF+++K A+ EAGP+DVLVVNQGVF P ELE Q L EV  MIDVN+I
Sbjct: 88  TGVDVAIFPADVRDFESLKKAVTEAGPIDVLVVNQGVFFPEELEKQELSEVNFMIDVNLI 147

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           GSF+MIKAALP++K R++ GPASIALMSSQAGQVG
Sbjct: 148 GSFNMIKAALPVMKNRKDSGPASIALMSSQAGQVG 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432720|ref|XP_004134147.1| PREDICTED: 3-ketodihydrosphingosine reductase-like [Cucumis sativus]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/155 (74%), Positives = 137/155 (88%)

Query: 25  IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
           IVRP+PVRI +K RHVFITGGSSGIGLALAHQAA EGARVSILARS +KLEEAK +I+L+
Sbjct: 26  IVRPRPVRISLKSRHVFITGGSSGIGLALAHQAATEGARVSILARSLKKLEEAKDAIRLS 85

Query: 85  TGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
           TGI+VA Y+ADVRD+DA+  A+DEAGP+DVL+VNQGVFVP EL  Q LDEV+ M+DVN++
Sbjct: 86  TGIDVAVYAADVRDYDAILKAVDEAGPIDVLIVNQGVFVPQELAEQELDEVKFMLDVNLL 145

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           G+F+MIKAALP +K R +  PASIALMSSQAGQVG
Sbjct: 146 GTFNMIKAALPAMKNRVDRRPASIALMSSQAGQVG 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807975|ref|XP_002871871.1| short-chain dehydrogenase/reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317708|gb|EFH48130.1| short-chain dehydrogenase/reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 138/160 (86%)

Query: 20  LLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ 79
           ++L  IVRP+ V+IPIK RHVFITGGSSGIGLALAH A  EGA+VSILARS E L EAK+
Sbjct: 20  IILAFIVRPRSVKIPIKSRHVFITGGSSGIGLALAHSAVSEGAKVSILARSTENLAEAKR 79

Query: 80  SIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMI 139
           SIQLATG+EVAT+SADVRD+DAV  A+DE+GP+DVL+VNQGVF+  ELE QS +EV+ MI
Sbjct: 80  SIQLATGVEVATFSADVRDYDAVSKAVDESGPIDVLIVNQGVFIGKELEKQSPEEVKFMI 139

Query: 140 DVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           DVN++GSF++IKAALP +K R+  GPASI+L+SSQAGQ G
Sbjct: 140 DVNLVGSFNVIKAALPAMKAREGRGPASISLVSSQAGQAG 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548983|ref|XP_003542878.1| PREDICTED: 3-ketodihydrosphingosine reductase-like isoform 1 [Glycine max]

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 138/159 (86%)

Query: 21  LLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS 80
           +LY +VRP+PV+IPIK+RHVFITGGSSGIGLALAH+AA EGARVSILARS +KLEEA+ +
Sbjct: 21  VLYFLVRPRPVKIPIKNRHVFITGGSSGIGLALAHRAAAEGARVSILARSPDKLEEARNA 80

Query: 81  IQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMID 140
           I+LATG+EVA ++ADVRDF+AVK A+D+AGP+DVL++N GVFV  EL+   L EV+  +D
Sbjct: 81  IRLATGMEVAAFAADVRDFEAVKRAVDDAGPIDVLLLNHGVFVALELDKMELSEVKFTMD 140

Query: 141 VNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           VN++G+ ++IKAALP +K R +  PASIAL+SSQAGQVG
Sbjct: 141 VNLMGTLNLIKAALPAMKNRNDPLPASIALVSSQAGQVG 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2080379	326	TSC10A "TSC10A" [Arabidopsis t	0.865	0.475	0.729	3.3e-56
TAIR|locus:2182192	331	TSC10B "TSC10B" [Arabidopsis t	0.865	0.468	0.735	3.7e-55
ZFIN|ZDB-GENE-040426-853	359	kdsr "3-ketodihydrosphingosine	0.837	0.417	0.355	6.3e-20
UNIPROTKB|Q06136	332	KDSR "3-ketodihydrosphingosine	0.837	0.451	0.349	2.5e-19
UNIPROTKB|F1NJB4	332	KDSR "Uncharacterized protein"	0.837	0.451	0.355	4e-19
UNIPROTKB|Q5ZKZ6	224	KDSR "Uncharacterized protein"	0.837	0.669	0.355	4e-19
UNIPROTKB|F1SMW5	332	KDSR "Uncharacterized protein"	0.837	0.451	0.349	1.1e-18
MGI|MGI:1918000	332	Kdsr "3-ketodihydrosphingosine	0.837	0.451	0.343	1.1e-18
UNIPROTKB|Q2KIJ5	331	KDSR "3-ketodihydrosphingosine	0.837	0.453	0.337	1.4e-18
UNIPROTKB|F1MLE5	321	KDSR "3-ketodihydrosphingosine	0.832	0.464	0.339	2.2e-18

TAIR|locus:2080379 TSC10A "TSC10A" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 113/155 (72%), Positives = 137/155 (88%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             IVRP+P++IPIK RH FITGGSSGIGLALAH+AA EGARVSILARSG KLEEAK+SIQLA
Sbjct:    27 IVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAASEGARVSILARSGSKLEEAKKSIQLA 86

Query:    85 TGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
             TG+EVAT+SADVRD+DAV  A+DE+GP+DVL+VNQGVF   EL   S ++V+  IDVN++
Sbjct:    87 TGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFTAKELVKHSPEDVKFTIDVNLV 146

Query:   145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             GSF++IKAALP +K R++ GPASI+L+SSQAGQVG
Sbjct:   147 GSFNVIKAALPAMKARKDRGPASISLVSSQAGQVG 181

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0030148 "sphingolipid biosynthetic process" evidence=IMP

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IDA

TAIR|locus:2182192 TSC10B "TSC10B" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 114/155 (73%), Positives = 135/155 (87%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             IVRP+ V IPIK RHVFITGGSSGIGLALAH+A  EGA+VSILARS EKL EAK+SIQLA
Sbjct:    25 IVRPRSVTIPIKFRHVFITGGSSGIGLALAHRAVSEGAKVSILARSTEKLAEAKRSIQLA 84

Query:    85 TGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
             TG+EVAT+SADVRD+DAV  A+DE+GP+DVL+VNQGVF+  ELE QS +EV+ MIDVN+ 
Sbjct:    85 TGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFIGKELEKQSPEEVKFMIDVNLT 144

Query:   145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             GSF++IKAALP +K R+  GPASI+L+SSQAGQ G
Sbjct:   145 GSFNVIKAALPAMKAREGRGPASISLVSSQAGQAG 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0030148 "sphingolipid biosynthetic process" evidence=IMP

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IDA

ZFIN|ZDB-GENE-040426-853 kdsr "3-ketodihydrosphingosine reductase" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 6.3e-20, P = 6.3e-20
 Identities = 58/163 (35%), Positives = 97/163 (59%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ-L 83
             ++ PKP+++     HV +TGGSSGIG  +A +  K GA ++++AR   KL +AK+ ++  
Sbjct:    49 LISPKPLKL--NGAHVVVTGGSSGIGKCIAMECYKHGAFITLVARDEHKLVQAKKEVEKF 106

Query:    84 ATGIE--VATYSADV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVR 136
             A   +  V   S DV +D+  V++ + +A    GPVD+LV   G  + G+ E   +D  +
Sbjct:   107 AINDKQVVLCISVDVAKDYSQVESVIKQAQEKLGPVDMLVNCAGTSLSGKFEEVEVDHFK 166

Query:   137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              M++VN +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct:   167 KMMEVNYLGSVYPTRAVITTMKERRMG---RIMFVSSQAGQIG 206

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q06136 KDSR "3-ketodihydrosphingosine reductase" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 57/163 (34%), Positives = 99/163 (60%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I++ 
Sbjct:    22 LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMH 79

Query:    85 TGIE---VATYSADV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVR 136
             +  +   V   S DV +D++ V+  + +A    GPVD+LV   G+ V G+ E   +    
Sbjct:    80 SINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEVSTFE 139

Query:   137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              ++ +N +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct:   140 RLMSINYLGSVYPSRAVITTMKERRVG---RIVFVSSQAGQLG 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006666 "3-keto-sphinganine metabolic process" evidence=IDA

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IDA

GO:0005615 "extracellular space" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006665 "sphingolipid metabolic process" evidence=TAS

GO:0030148 "sphingolipid biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1NJB4 KDSR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 58/163 (35%), Positives = 96/163 (58%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             ++ PKP+++P    HV +TGGSSGIG  +A +  K+GA ++++AR   KL + K+ I+  
Sbjct:    22 LISPKPLKLP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLIARDENKLLQTKKEIEKY 79

Query:    85 TGIE---VATYSADV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVR 136
             +  +   V   S DV +D++ V+  L +A    GPVD+LV   G  V G+ E   ++   
Sbjct:    80 SVNDKQVVLCISVDVSKDYEQVENVLKQAQEKLGPVDLLVNCAGTSVTGKFEDIEVNSFE 139

Query:   137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              ++ VN +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct:   140 RLMAVNYLGSVYPSRAVISTMKERRMG---RIVFVSSQAGQLG 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006666 "3-keto-sphinganine metabolic process" evidence=IEA

GO:0030148 "sphingolipid biosynthetic process" evidence=IEA

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IEA

UNIPROTKB|Q5ZKZ6 KDSR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 58/163 (35%), Positives = 96/163 (58%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             ++ PKP+++P    HV +TGGSSGIG  +A +  K+GA ++++AR   KL + K+ I+  
Sbjct:     5 LISPKPLKLP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLIARDENKLLQTKKEIEKY 62

Query:    85 TGIE---VATYSADV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVR 136
             +  +   V   S DV +D++ V+  L +A    GPVD+LV   G  V G+ E   ++   
Sbjct:    63 SVNDKQVVLCISVDVSKDYEQVENVLKQAQEKLGPVDLLVNCAGTSVTGKFEDIEVNSFE 122

Query:   137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              ++ VN +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct:   123 RLMAVNYLGSVYPSRAVISTMKERRMG---RIVFVSSQAGQLG 162

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006666 "3-keto-sphinganine metabolic process" evidence=IEA

GO:0030148 "sphingolipid biosynthetic process" evidence=IEA

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006665 "sphingolipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1SMW5 KDSR "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 57/163 (34%), Positives = 98/163 (60%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I+  
Sbjct:    22 LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKH 79

Query:    85 TGIE---VATYSADV-RDF----DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVR 136
             +  +   V   S DV +D+    + +K A ++ GPVD+LV   G+ + G+ E   +    
Sbjct:    80 SINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFE 139

Query:   137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              ++ VN +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct:   140 RLMSVNYLGSVYPSRAVITTMKERRVG---RIVFVSSQAGQLG 179

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IEA

GO:0030148 "sphingolipid biosynthetic process" evidence=IEA

GO:0006666 "3-keto-sphinganine metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1918000 Kdsr "3-ketodihydrosphingosine reductase" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 56/163 (34%), Positives = 97/163 (59%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I+  
Sbjct:    22 LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKH 79

Query:    85 TGIE---VATYSADV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVR 136
             +  +   V   S DV +D++ V+  + +A    GPVD+LV   G  + G+ E   +    
Sbjct:    80 SINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFE 139

Query:   137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              ++ +N +GS +  +A +  +K+R+ G    I  +SSQAGQ+G
Sbjct:   140 KLMSINYLGSVYPSRAVITTMKERRVG---RIVFVSSQAGQLG 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006665 "sphingolipid metabolic process" evidence=IEA

GO:0006666 "3-keto-sphinganine metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030148 "sphingolipid biosynthetic process" evidence=IGI

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q2KIJ5 KDSR "3-ketodihydrosphingosine reductase" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 55/163 (33%), Positives = 98/163 (60%)

Query:    25 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
             ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I+  
Sbjct:    22 LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKH 79

Query:    85 TGIE---VATYSADV-RDF----DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVR 136
             +  +   V   S DV +D+    + +K A ++ GPVD+LV   G+ + G+ E   +    
Sbjct:    80 SINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFE 139

Query:   137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              ++ +N +GS +  +A +  +K+R+ G    +  +SSQAGQ+G
Sbjct:   140 RLMSINYLGSVYPSRAVIATMKERRMG---RVVFVSSQAGQLG 179

GO:0006665 "sphingolipid metabolic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1MLE5 KDSR "3-ketodihydrosphingosine reductase" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 55/162 (33%), Positives = 97/162 (59%)

Query:    26 VRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT 85
             + PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I+  +
Sbjct:    12 ISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHS 69

Query:    86 GIE---VATYSADV-RDF----DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL 137
               +   V   S DV +D+    + +K A ++ GPVD+LV   G+ + G+ E   +     
Sbjct:    70 INDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFER 129

Query:   138 MIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             ++ +N +GS +  +A +  +K+R+ G    +  +SSQAGQ+G
Sbjct:   130 LMSINYLGSVYPSRAVIATMKERRMG---RVVFVSSQAGQLG 168

GO:0047560 "3-dehydrosphinganine reductase activity" evidence=IEA

GO:0030148 "sphingolipid biosynthetic process" evidence=IEA

GO:0006666 "3-keto-sphinganine metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	1e-43
cd05233	234	cd05233, SDR_c, classical (c) SDRs	2e-35
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	3e-31
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-31
cd05369	249	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta	8e-30
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	9e-30
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	3e-29
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-28
PRK07326	237	PRK07326, PRK07326, short chain dehydrogenase; Pro	3e-28
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	2e-26
PRK07109	334	PRK07109, PRK07109, short chain dehydrogenase; Pro	2e-26
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	5e-26
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	5e-26
PRK05557	248	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-25
PRK07576	264	PRK07576, PRK07576, short chain dehydrogenase; Pro	7e-25
PRK07666	239	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-24
cd05360	233	cd05360, SDR_c3, classical (c) SDR, subgroup 3	2e-23
cd05352	252	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M	3e-23
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	3e-23
PRK06180	277	PRK06180, PRK06180, short chain dehydrogenase; Pro	4e-23
cd05347	248	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena	6e-23
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-23
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	1e-22
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	1e-22
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	2e-22
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	4e-22
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	5e-22
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	1e-21
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	2e-21
PRK12429	258	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas	3e-21
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	3e-21
PRK05565	247	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein)	5e-21
PRK12827	249	PRK12827, PRK12827, short chain dehydrogenase; Pro	5e-21
PRK07454	241	PRK07454, PRK07454, short chain dehydrogenase; Pro	6e-21
PRK08226	263	PRK08226, PRK08226, short chain dehydrogenase; Pro	8e-21
PRK06125	259	PRK06125, PRK06125, short chain dehydrogenase; Pro	1e-20
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	2e-20
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	2e-20
cd08932	223	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like	5e-20
cd05364	253	cd05364, SDR_c11, classical (c) SDR, subgroup 11	6e-20
PRK07024	257	PRK07024, PRK07024, short chain dehydrogenase; Pro	8e-20
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	1e-19
cd05356	239	cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst	1e-19
PRK07677	252	PRK07677, PRK07677, short chain dehydrogenase; Pro	2e-19
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	2e-19
PRK08278	273	PRK08278, PRK08278, short chain dehydrogenase; Pro	2e-19
TIGR04316	250	TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben	2e-19
PRK07063	260	PRK07063, PRK07063, short chain dehydrogenase; Pro	2e-19
PRK05650	270	PRK05650, PRK05650, short chain dehydrogenase; Pro	2e-19
cd05341	247	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta	3e-19
PRK06181	263	PRK06181, PRK06181, short chain dehydrogenase; Pro	4e-19
cd09806	258	cd09806, type1_17beta-HSD-like_SDR_c, human estrog	4e-19
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	6e-19
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	9e-19
PRK06463	255	PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-18
TIGR01963	255	TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase	1e-18
cd05355	270	cd05355, SDR_c1, classical (c) SDR, subgroup 1	1e-18
PRK08267	260	PRK08267, PRK08267, short chain dehydrogenase; Pro	1e-18
PRK06914	280	PRK06914, PRK06914, short chain dehydrogenase; Pro	2e-18
PRK07825	273	PRK07825, PRK07825, short chain dehydrogenase; Pro	3e-18
cd05362	243	cd05362, THN_reductase-like_SDR_c, tetrahydroxynap	3e-18
cd08929	226	cd08929, SDR_c4, classical (c) SDR, subgroup 4	3e-18
cd05371	252	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr	4e-18
PRK06500	249	PRK06500, PRK06500, short chain dehydrogenase; Pro	4e-18
PRK06200	263	PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny	8e-18
PRK07890	258	PRK07890, PRK07890, short chain dehydrogenase; Pro	9e-18
PRK08213	259	PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro	1e-17
PRK07832	272	PRK07832, PRK07832, short chain dehydrogenase; Pro	1e-17
PRK06139	330	PRK06139, PRK06139, short chain dehydrogenase; Pro	2e-17
cd05338	246	cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena	3e-17
PRK06182	273	PRK06182, PRK06182, short chain dehydrogenase; Val	5e-17
PRK05876	275	PRK05876, PRK05876, short chain dehydrogenase; Pro	6e-17
TIGR02632	676	TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate	7e-17
PRK05866	293	PRK05866, PRK05866, short chain dehydrogenase; Pro	7e-17
PRK07097	265	PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro	8e-17
PRK09072	263	PRK09072, PRK09072, short chain dehydrogenase; Pro	1e-16
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	1e-16
cd05348	257	cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro	2e-16
PRK07523	255	PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro	2e-16
cd05323	244	cd05323, ADH_SDR_c_like, insect type alcohol dehyd	2e-16
cd08931	227	cd08931, SDR_c9, classical (c) SDR, subgroup 9	3e-16
cd09762	243	cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro	3e-16
PRK06482	276	PRK06482, PRK06482, short chain dehydrogenase; Pro	4e-16
PRK12939	250	PRK12939, PRK12939, short chain dehydrogenase; Pro	4e-16
cd05368	241	cd05368, DHRS6_like_SDR_c, human DHRS6-like, class	5e-16
TIGR03971	265	TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil	5e-16
cd08945	258	cd08945, PKR_SDR_c, Polyketide ketoreductase, clas	6e-16
cd05358	253	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc	6e-16
PRK08643	256	PRK08643, PRK08643, acetoin reductase; Validated	7e-16
cd05351	244	cd05351, XR_like_SDR_c, xylulose reductase-like, c	7e-16
PRK06138	252	PRK06138, PRK06138, short chain dehydrogenase; Pro	8e-16
PRK08217	253	PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein)	8e-16
PRK08263	275	PRK08263, PRK08263, short chain dehydrogenase; Pro	8e-16
PRK07062	265	PRK07062, PRK07062, short chain dehydrogenase; Pro	1e-15
PRK07069	251	PRK07069, PRK07069, short chain dehydrogenase; Val	1e-15
PRK07041	230	PRK07041, PRK07041, short chain dehydrogenase; Pro	2e-15
cd08940	258	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge	3e-15
cd05330	257	cd05330, cyclohexanol_reductase_SDR_c, cyclohexano	3e-15
cd05329	251	cd05329, TR_SDR_c, tropinone reductase-I and II (T	3e-15
PRK12824	245	PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro	7e-15
PRK12742	237	PRK12742, PRK12742, oxidoreductase; Provisional	1e-14
cd05343	250	cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c	1e-14
PRK06179	270	PRK06179, PRK06179, short chain dehydrogenase; Pro	1e-14
cd05373	238	cd05373, SDR_c10, classical (c) SDR, subgroup 10	1e-14
PRK08936	261	PRK08936, PRK08936, glucose-1-dehydrogenase; Provi	1e-14
cd05366	257	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol	1e-14
TIGR03206	250	TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy	1e-14
PRK12828	239	PRK12828, PRK12828, short chain dehydrogenase; Pro	2e-14
TIGR01829	242	TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta	2e-14
COG3967	245	COG3967, DltE, Short-chain dehydrogenase involved	2e-14
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	3e-14
PRK06398	258	PRK06398, PRK06398, aldose dehydrogenase; Validate	3e-14
PRK06701	290	PRK06701, PRK06701, short chain dehydrogenase; Pro	4e-14
TIGR03325	262	TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-	5e-14
PRK07831	262	PRK07831, PRK07831, short chain dehydrogenase; Pro	6e-14
PRK13394	262	PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas	7e-14
PRK09242	257	PRK09242, PRK09242, tropinone reductase; Provision	8e-14
PRK08220	252	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy	1e-13
PRK06841	255	PRK06841, PRK06841, short chain dehydrogenase; Pro	1e-13
PRK08219	227	PRK08219, PRK08219, short chain dehydrogenase; Pro	1e-13
PRK07775	274	PRK07775, PRK07775, short chain dehydrogenase; Pro	2e-13
cd05357	234	cd05357, PR_SDR_c, pteridine reductase (PR), class	2e-13
TIGR02415	254	TIGR02415, 23BDH, acetoin reductases	2e-13
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	2e-13
PRK06949	258	PRK06949, PRK06949, short chain dehydrogenase; Pro	3e-13
cd05367	241	cd05367, SPR-like_SDR_c, sepiapterin reductase (SP	3e-13
cd05353	250	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-	5e-13
cd08943	250	cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al	7e-13
PRK08251	248	PRK08251, PRK08251, short chain dehydrogenase; Pro	7e-13
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	8e-13
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	1e-12
PRK12937	245	PRK12937, PRK12937, short chain dehydrogenase; Pro	1e-12
PRK07478	254	PRK07478, PRK07478, short chain dehydrogenase; Pro	1e-12
PRK08589	272	PRK08589, PRK08589, short chain dehydrogenase; Val	2e-12
PRK08628	258	PRK08628, PRK08628, short chain dehydrogenase; Pro	3e-12
PRK12935	247	PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro	3e-12
cd09810	311	cd09810, LPOR_like_SDR_c_like, light-dependent pro	3e-12
PRK05786	238	PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-12
PRK07060	245	PRK07060, PRK07060, short chain dehydrogenase; Pro	5e-12
cd05349	246	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl	5e-12
PRK08085	254	PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro	5e-12
cd08933	261	cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl	6e-12
cd05331	244	cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz	6e-12
PRK06198	260	PRK06198, PRK06198, short chain dehydrogenase; Pro	6e-12
PRK06057	255	PRK06057, PRK06057, short chain dehydrogenase; Pro	7e-12
PRK12745	256	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote	7e-12
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	7e-12
cd05345	248	cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl	7e-12
PRK08945	247	PRK08945, PRK08945, putative oxoacyl-(acyl carrier	8e-12
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	1e-11
PRK06124	256	PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro	2e-11
PRK06194	287	PRK06194, PRK06194, hypothetical protein; Provisio	4e-11
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	5e-11
PRK06171	266	PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro	5e-11
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	5e-11
PRK06123	248	PRK06123, PRK06123, short chain dehydrogenase; Pro	5e-11
PRK06114	254	PRK06114, PRK06114, short chain dehydrogenase; Pro	6e-11
PRK07814	263	PRK07814, PRK07814, short chain dehydrogenase; Pro	7e-11
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	8e-11
cd08936	256	cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re	8e-11
PRK10538	248	PRK10538, PRK10538, malonic semialdehyde reductase	9e-11
cd05340	236	cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li	1e-10
cd05326	249	cd05326, secoisolariciresinol-DH_like_SDR_c, secoi	1e-10
PRK05875	276	PRK05875, PRK05875, short chain dehydrogenase; Pro	2e-10
cd08935	271	cd08935, mannonate_red_SDR_c, putative D-mannonate	3e-10
PRK06947	248	PRK06947, PRK06947, glucose-1-dehydrogenase; Provi	3e-10
PRK07102	243	PRK07102, PRK07102, short chain dehydrogenase; Pro	6e-10
cd09805	281	cd09805, type2_17beta_HSD-like_SDR_c, human 17beta	9e-10
cd05363	254	cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH),	9e-10
cd08930	250	cd08930, SDR_c8, classical (c) SDR, subgroup 8	9e-10
cd08942	250	cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy	9e-10
PRK12938	246	PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro	1e-09
PRK08063	250	PRK08063, PRK08063, enoyl-(acyl carrier protein) r	1e-09
PRK07774	250	PRK07774, PRK07774, short chain dehydrogenase; Pro	1e-09
PRK06550	235	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-09
PRK05855	582	PRK05855, PRK05855, short chain dehydrogenase; Val	2e-09
PRK05867	253	PRK05867, PRK05867, short chain dehydrogenase; Pro	2e-09
TIGR01831	239	TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote	2e-09
cd11730	206	cd11730, Tthb094_like_SDR_c, Tthb094 and related p	2e-09
PLN02253	280	PLN02253, PLN02253, xanthoxin dehydrogenase	2e-09
PRK08642	253	PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-09
PRK07856	252	PRK07856, PRK07856, short chain dehydrogenase; Pro	4e-09
PRK08703	239	PRK08703, PRK08703, short chain dehydrogenase; Pro	4e-09
pfam08659	181	pfam08659, KR, KR domain	5e-09
cd08953	436	cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup	5e-09
PRK06935	258	PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog	5e-09
PRK09135	249	PRK09135, PRK09135, pteridine reductase; Provision	6e-09
cd08937	256	cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa	6e-09
cd09808	255	cd09808, DHRS-12_like_SDR_c-like, human dehydrogen	7e-09
PRK12823	260	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1	8e-09
PRK07577	234	PRK07577, PRK07577, short chain dehydrogenase; Pro	8e-09
PRK05854	313	PRK05854, PRK05854, short chain dehydrogenase; Pro	1e-08
PRK12743	256	PRK12743, PRK12743, oxidoreductase; Provisional	1e-08
cd05337	255	cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl	1e-08
PRK06172	253	PRK06172, PRK06172, short chain dehydrogenase; Pro	2e-08
smart00822	180	smart00822, PKS_KR, This enzymatic domain is part	2e-08
PRK08339	263	PRK08339, PRK08339, short chain dehydrogenase; Pro	2e-08
cd05359	242	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c	3e-08
PRK07985	294	PRK07985, PRK07985, oxidoreductase; Provisional	3e-08
PRK07074	257	PRK07074, PRK07074, short chain dehydrogenase; Pro	4e-08
PRK07035	252	PRK07035, PRK07035, short chain dehydrogenase; Pro	4e-08
cd05322	257	cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehy	4e-08
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	6e-08
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	6e-08
PRK08340	259	PRK08340, PRK08340, glucose-1-dehydrogenase; Provi	1e-07
PRK12746	254	PRK12746, PRK12746, short chain dehydrogenase; Pro	1e-07
cd09761	242	cd09761, A3DFK9-like_SDR_c, Clostridium thermocell	2e-07
PLN02780	320	PLN02780, PLN02780, ketoreductase/ oxidoreductase	2e-07
PRK07453	322	PRK07453, PRK07453, protochlorophyllide oxidoreduc	2e-07
cd05274	375	cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt	2e-07
cd11731	198	cd11731, Lin1944_like_SDR_c, Lin1944 and related p	3e-07
PRK06113	255	PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro	3e-07
PRK07791	286	PRK07791, PRK07791, short chain dehydrogenase; Pro	7e-07
PRK12936	245	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote	8e-07
TIGR01832	248	TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena	1e-06
PRK06197	306	PRK06197, PRK06197, short chain dehydrogenase; Pro	1e-06
PLN00015	308	PLN00015, PLN00015, protochlorophyllide reductase	1e-06
TIGR01289	314	TIGR01289, LPOR, light-dependent protochlorophylli	1e-06
PRK06128	300	PRK06128, PRK06128, oxidoreductase; Provisional	2e-06
PRK06196	315	PRK06196, PRK06196, oxidoreductase; Provisional	2e-06
PRK09730	247	PRK09730, PRK09730, putative NAD(P)-binding oxidor	2e-06
PRK05993	277	PRK05993, PRK05993, short chain dehydrogenase; Pro	2e-06
cd05237	287	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l	3e-06
PRK08265	261	PRK08265, PRK08265, short chain dehydrogenase; Pro	4e-06
PRK07904	253	PRK07904, PRK07904, short chain dehydrogenase; Pro	5e-06
PRK07806	248	PRK07806, PRK07806, short chain dehydrogenase; Pro	7e-06
cd08955	376	cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase (	8e-06
PRK06077	252	PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein)	8e-06
cd08951	260	cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13	1e-05
PRK05693	274	PRK05693, PRK05693, short chain dehydrogenase; Pro	1e-05
PRK08177	225	PRK08177, PRK08177, short chain dehydrogenase; Pro	2e-05
cd05258	337	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e	2e-05
PRK09291	257	PRK09291, PRK09291, short chain dehydrogenase; Pro	4e-05
cd08954	452	cd08954, KR_1_FAS_SDR_x, beta-ketoacyl reductase (	5e-05
cd05328	250	cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de	5e-05
PRK06953	222	PRK06953, PRK06953, short chain dehydrogenase; Pro	5e-05
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	7e-05
cd01078	194	cd01078, NAD_bind_H4MPT_DH, NADP binding domain of	7e-05
PRK06101	240	PRK06101, PRK06101, short chain dehydrogenase; Pro	8e-05
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	1e-04
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	1e-04
pfam13561	239	pfam13561, adh_short_C2, Enoyl-(Acyl carrier prote	2e-04
cd09763	265	cd09763, DHRS1-like_SDR_c, human dehydrogenase/red	2e-04
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	3e-04
PRK06523	260	PRK06523, PRK06523, short chain dehydrogenase; Pro	3e-04
PRK12747	252	PRK12747, PRK12747, short chain dehydrogenase; Pro	3e-04
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	3e-04
PRK06924	251	PRK06924, PRK06924, short chain dehydrogenase; Pro	4e-04
PRK09186	256	PRK09186, PRK09186, flagellin modification protein	5e-04
pfam02719	280	pfam02719, Polysacc_synt_2, Polysaccharide biosynt	9e-04
TIGR01500	256	TIGR01500, sepiapter_red, sepiapterin reductase	9e-04
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	0.001
PRK08993	253	PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog	0.001
PRK09134	258	PRK09134, PRK09134, short chain dehydrogenase; Pro	0.002
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	0.002
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	0.002
PRK12744	257	PRK12744, PRK12744, short chain dehydrogenase; Pro	0.004
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	0.004
PRK08261	450	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein)	0.004

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score =  144 bits (366), Expect = 1e-43
 Identities = 66/150 (44%), Positives = 93/150 (62%), Gaps = 10/150 (6%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ---LATGIEVATYS 93
            +HV ITGGSSGIG ALA +  KEGA V I+ARS  KLEEA + I+    A+G +V+  S
Sbjct: 1   GKHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYIS 60

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           AD+ D++ V+ A  +A    GP D++V   G+ +PG  E  + +E    +DVN  GS ++
Sbjct: 61  ADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNV 120

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             A LPL+K+++   P  I  +SSQA  VG
Sbjct: 121 AHAVLPLMKEQR---PGHIVFVSSQAALVG 147

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score =  123 bits (311), Expect = 2e-35
 Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 9/144 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG SSGIG A+A + A+EGA+V +  R+ E L E      L  G       ADV D 
Sbjct: 1   ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAAIEAL--GGNAVAVQADVSDE 58

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           + V+  ++EA    G +D+LV N G+  PG LE  + ++   ++DVN+ G F + +AALP
Sbjct: 59  EDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAALP 118

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +KK+  G    I  +SS AG   
Sbjct: 119 HMKKQGGG---RIVNISSVAGLRP 139

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score =  112 bits (283), Expect = 3e-31
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 10/147 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   ITG SSGIG A A   A+ GA+V + AR  E+LE     I     + +A    
Sbjct: 4   LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALAL--- 60

Query: 95  DVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D  AV+ A+    +E G +D+LV N G+ +   L+   LD+   MID N+ G  +  
Sbjct: 61  DVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGT 120

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQ 177
           +A LP + +R++G    I  + S AG+
Sbjct: 121 RAVLPGMVERKSG---HIINLGSIAGR 144

Length = 246

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score =  111 bits (280), Expect = 9e-31
 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 8/148 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TG S GIG A+A + A +GA+V I   + E  E     ++ A G E      D
Sbjct: 4   QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR-AAGGEARVLVFD 62

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  AV+  ++ A    G +D+LV N G+     L   S ++   +IDVN+ G+F++++
Sbjct: 63  VSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVR 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           AALP + K + G    I  +SS +G  G
Sbjct: 123 AALPPMIKARYG---RIVNISSVSGVTG 147

Length = 246

>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR

 Score =  109 bits (274), Expect = 8e-30
 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K +  FITGG +GIG A+A   A+ GA V+I  R  E LE A + I  ATG        D
Sbjct: 2   KGKVAFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISSATGGRAHPIQCD 61

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           VRD +AV+ A+DE     G +D+L+ N         E  S +  + +ID+++ G+F+  K
Sbjct: 62  VRDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAESLSPNGFKTVIDIDLNGTFNTTK 121

Query: 152 AALPLIKKRQNGG 164
           A    + + ++GG
Sbjct: 122 AVGKRLIEAKHGG 134

TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score =  109 bits (275), Expect = 9e-30
 Identities = 57/147 (38%), Positives = 79/147 (53%), Gaps = 7/147 (4%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P+K +   ITG SSGIG  LA Q A+ G  + ++AR  +KLE   + ++  TG+EV    
Sbjct: 3   PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIP 62

Query: 94  ADVRDFDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           AD+ D +A++   DE     GP+DVLV N G    G     SLDE   MI +NI+    +
Sbjct: 63  ADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRL 122

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAG 176
            KA LP + +R  G    I  + S AG
Sbjct: 123 TKAVLPGMVERGAGH---IINIGSAAG 146

Length = 265

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score =  108 bits (271), Expect = 3e-29
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 8/147 (5%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
            ++ R   +TG + GIG A+A + A +GA V ++   G+      + ++ A G +     
Sbjct: 3   DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE-AAGGKARARQ 61

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DVRD  A+K A+       G +D+LV N G+F          ++   +IDVN+ G+F +
Sbjct: 62  VDVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLL 121

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAG 176
            +AALP +  R  GG   I L SS AG
Sbjct: 122 TQAALPAL-IRAGGG--RIVLTSSVAG 145

Length = 251

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score =  105 bits (264), Expect = 2e-28
 Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 9/147 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADV 96
           R   +TG + G+G A+A + A+ GA V +  RS  E  EE  ++++ A G       ADV
Sbjct: 7   RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVE-ALGRRAQAVQADV 65

Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            D  A++ A+  A    G +D+LV N G+F    L   S DE   +IDVN+ G FH+++A
Sbjct: 66  TDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRA 125

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            +P ++K++ G    I  +SS AG  G
Sbjct: 126 VVPPMRKQRGG---RIVNISSVAGLPG 149

Length = 249

>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional

 Score =  104 bits (262), Expect = 3e-28
 Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 10/146 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   ITGGS GIG A+A     EG +V+I AR  ++LEEA    +L     V   +A
Sbjct: 4   LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA--ELNNKGNVLGLAA 61

Query: 95  DVRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DVRD      AV   +   G +DVL+ N GV     +E  + +E RL+ID N+ G+F+ I
Sbjct: 62  DVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTI 121

Query: 151 KAALPLIKKRQNGGPASIALMSSQAG 176
           KAA+P +K+   GG   I  +SS AG
Sbjct: 122 KAAVPALKR--GGG--YIINISSLAG 143

Length = 237

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 58/153 (37%), Positives = 84/153 (54%), Gaps = 14/153 (9%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK--LEEAKQSIQLATGIEVATY 92
           +  +   +TG SSGIG A+A   A+EGARV + AR  E+   E    +I+ A G   A  
Sbjct: 3   LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAV 62

Query: 93  SADVRDF-----DAVKTALDEAGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGS 146
           +ADV D        V  A +E G +D+LV N G+  P   LE  + ++   +IDVN++G+
Sbjct: 63  AADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGA 122

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           F + +AALPL+KK+       I  +SS AG  G
Sbjct: 123 FLLTRAALPLMKKQ------RIVNISSVAGLGG 149

Length = 251

>gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional

 Score =  101 bits (255), Expect = 2e-26
 Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           PI  + V ITG S+G+G A A   A+ GA+V +LAR  E LE     I+ A G E     
Sbjct: 5   PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR-AAGGEALAVV 63

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           ADV D +AV+ A D A    GP+D  V N  V V G  E  + +E R + +V  +G  H 
Sbjct: 64  ADVADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHG 123

Query: 150 IKAALPLIKKRQNGG 164
             AAL  ++ R + G
Sbjct: 124 TLAALRHMRPR-DRG 137

Length = 334

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 99.2 bits (248), Expect = 5e-26
 Identities = 60/144 (41%), Positives = 83/144 (57%), Gaps = 11/144 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG SSGIGLALA   A +G RV   AR+ +KLE   +   L   +EV     DV D 
Sbjct: 3   VLITGCSSGIGLALALALAAQGYRVIATARNPDKLESLGEL--LNDNLEV--LELDVTDE 58

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           +++K A+ E     G +DVLV N G  + G LE  S++EVR + +VN+ G   + +A LP
Sbjct: 59  ESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLRVTRAFLP 118

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
           L++K+ +G    I  +SS AG V 
Sbjct: 119 LMRKQGSG---RIVNVSSVAGLVP 139

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score = 99.6 bits (249), Expect = 5e-26
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V ITG SSGIG  LA+  A+ GAR+ + AR  E+LEE K                
Sbjct: 1   LQGKVVIITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSECLELGAPSPHVVPL 60

Query: 95  DVRDF----DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+ D       V+ AL   G +D+L+ N G+ +       S+D  R +++VN  G   + 
Sbjct: 61  DMSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDTSIDVDRKIMEVNYFGPVALT 120

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KAALP + +R  G   SI ++SS AG++G
Sbjct: 121 KAALPHLIERSQG---SIVVVSSIAGKIG 146

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 97.2 bits (243), Expect = 3e-25
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ +   +TG S GIG A+A + A +GA V I   S E   EA  +   A G +      
Sbjct: 3   LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D ++V+ A+DEA    G VD+LV N G+     L     ++   +ID N+ G F++ 
Sbjct: 63  DVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLT 122

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KA    + K+++G   +I+ +    G  G
Sbjct: 123 KAVARPMMKQRSGRIINISSVVGLMGNPG 151

Length = 248

>gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional

 Score = 96.6 bits (241), Expect = 7e-25
 Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 5/126 (3%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           ++V + GG+SGI L +A   A+ GA V++ +RS EK++ A   +Q   G E    SADVR
Sbjct: 10  KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQ-QAGPEGLGVSADVR 68

Query: 98  DFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D+ AV+ A     DE GP+DVLV       P      S +  + ++D++++G+F+++KAA
Sbjct: 69  DYAAVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAA 128

Query: 154 LPLIKK 159
            PL+++
Sbjct: 129 YPLLRR 134

Length = 264

>gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 94.4 bits (235), Expect = 3e-24
 Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 8/149 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ ++  ITG   GIG A+A   AKEG  V +LAR+ E L+   + ++ A G++V   +A
Sbjct: 5   LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVE-AYGVKVVIATA 63

Query: 95  DVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D++ V  A+    +E G +D+L+ N G+   G+       E   +I VN++G ++  
Sbjct: 64  DVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYAT 123

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A LP + +RQ+G    I  +SS AGQ G
Sbjct: 124 RAVLPSMIERQSG---DIINISSTAGQKG 149

Length = 239

>gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3

 Score = 92.1 bits (229), Expect = 2e-23
 Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 14/150 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG SSGIG A A   A+ GA+V + ARS E L E  + ++   G E     ADV D 
Sbjct: 3   VVITGASSGIGRATALAFAERGAKVVLAARSAEALHELAREVR-ELGGEAIAVVADVADA 61

Query: 100 DAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
             V+    TA++  G +D  V N GV V G  E  + +E R + DVN +G  +   AALP
Sbjct: 62  AQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDVTPEEFRRVFDVNYLGHVYGTLAALP 121

Query: 156 LIKKRQNG---------GPASIALMSSQAG 176
            +++R  G         G  S  L ++ + 
Sbjct: 122 HLRRRGGGALINVGSLLGYRSAPLQAAYSA 151

These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233

>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs

 Score = 92.0 bits (229), Expect = 3e-23
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K +   +TGGS GIGLA+A   A+ GA V+I+  S  + EE  + +    G++   Y  D
Sbjct: 7   KGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGVKTKAYKCD 66

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   ++V+    +     G +D+L+ N G+ V       + ++   +IDVN+ G F+  +
Sbjct: 67  VSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGVFNCAQ 126

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQV 178
           AA  + KK+  G   S+ + +S +G +
Sbjct: 127 AAAKIFKKQGKG---SLIITASMSGTI 150

NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 89.9 bits (224), Expect = 3e-23
 Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILA-RSG--EKLEEAKQSIQLATGIEVATYSA 94
             V ITGG+ G+GLALA   A EGAR  +L  R G      E    ++ A G EV   + 
Sbjct: 1   GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELE-ALGAEVTVAAC 59

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D DA+   L       GP+D +V N GV   G LE  + +    ++   + G++++ 
Sbjct: 60  DVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLH 119

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +    L          +  L SS AG +G
Sbjct: 120 ELTRDL-------DLGAFVLFSSVAGVLG 141

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional

 Score = 92.3 bits (230), Expect = 4e-23
 Identities = 47/128 (36%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE-AKQSIQLATGIEVATYSADVRDF 99
            ITG SSG G ALA  A   G RV    RS     +        A    +     DV DF
Sbjct: 8   LITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLL-----DVTDF 62

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           DA+   + +A    GP+DVLV N G    G +E   L E+R   +VN+ G+  M KA LP
Sbjct: 63  DAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLP 122

Query: 156 LIKKRQNG 163
            ++ R+ G
Sbjct: 123 GMRARRRG 130

Length = 277

>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs

 Score = 91.3 bits (227), Expect = 6e-23
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TG S GIG  +A   A+ GA + I +R+ EK EEA+Q I+   G+E   ++ DV D +A
Sbjct: 10  VTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIE-KEGVEATAFTCDVSDEEA 68

Query: 102 VKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           +K A++      G +D+LV N G+      E     E R +IDVN+ G F + +A    +
Sbjct: 69  IKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNGVFFVSQAVARHM 128

Query: 158 KKRQNGGPASIALMSSQAG 176
            K+ +G   +I  + S+ G
Sbjct: 129 IKQGHGKIINICSLLSELG 147

Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 90.7 bits (226), Expect = 9e-23
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL-ATGIEVATYSAD 95
            +   +TG SSGIG  +A + A EGARV +  R+ E  E     I      I VA   +D
Sbjct: 5   GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD 64

Query: 96  VRDFDA-VKTALDEAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
             D +A V  AL+  G VD+LV N G     G L      E   +  VN+   +   +AA
Sbjct: 65  EADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAA 124

Query: 154 LPLIKKRQNGGPASIALMSSQAG 176
           +P ++  + GG  +I  ++S AG
Sbjct: 125 VPAMRG-EGGG--AIVNVASTAG 144

Length = 251

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 93.9 bits (234), Expect = 1e-22
 Identities = 54/140 (38%), Positives = 73/140 (52%), Gaps = 11/140 (7%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R P+  + V ITG SSGIG A A + A+ GA V ++AR+GE L+E    I+ A G     
Sbjct: 366 RGPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR-AKGGTAHA 424

Query: 92  YSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEV----RLMIDVNI 143
           Y+ D+ D  A    VK  L E G VD LV N G  +   +E  S D      R M  VN 
Sbjct: 425 YTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRSVE-NSTDRFHDYERTM-AVNY 482

Query: 144 IGSFHMIKAALPLIKKRQNG 163
            G+  +I   LP +++R+ G
Sbjct: 483 FGAVRLILGLLPHMRERRFG 502

Length = 657

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 8/144 (5%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
            +   +T  SSGIGLA+A   A+EGARV+I AR+ E LE A   ++ A G  V    AD+
Sbjct: 1   GKVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASELR-AGGAGVLAVVADL 59

Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            D + +   +++A    G VD+LV N G   PG     + ++     D+ ++    +++A
Sbjct: 60  TDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAELTDEDWLEAFDLKLLSVIRIVRA 119

Query: 153 ALPLIKKRQNGGPASIALMSSQAG 176
            LP +K+R  G    I  +SS   
Sbjct: 120 VLPGMKERGWG---RIVNISSLTV 140

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score = 90.1 bits (224), Expect = 2e-22
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 10/151 (6%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P+    V +TGG+SGIG A+A   A+ GARV +   S   L           G +V    
Sbjct: 8   PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA---ARLPGAKVTATV 64

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFH 148
           ADV D   V+   D A    G +DVLV N G+  P G ++  + ++    + VN+ G F+
Sbjct: 65  ADVADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFY 124

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             +AA+PL+K   +GG   I  +SS AG++G
Sbjct: 125 FARAAVPLLKASGHGG--VIIALSSVAGRLG 153

Length = 264

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 91.8 bits (229), Expect = 4e-22
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG + GIG A A + A EGA V +     E  E A    +L         + DV D 
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAA--ELGGPDRALGVACDVTDE 482

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            AV+ A +EA    G VD++V N G+ + G +E  S ++ R   DVN  G F + + A+ 
Sbjct: 483 AAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVR 542

Query: 156 LIKKRQNGG 164
           ++K +  GG
Sbjct: 543 IMKAQGLGG 551

Length = 681

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 89.6 bits (223), Expect = 5e-22
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 7/132 (5%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
            +  + V +TG + GIG  LA +    GA+++++     +L        L     V T  
Sbjct: 6   SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAE--LGGDDRVLTVV 63

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           ADV D  A++ A +EA    G +DV+V N G+   G +     D  R +IDVN++G FH 
Sbjct: 64  ADVTDLAAMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHT 123

Query: 150 IKAALP-LIKKR 160
           ++A LP LI++R
Sbjct: 124 VRATLPALIERR 135

Length = 296

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 10/145 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSADVRD 98
           V ITG SSGIG ALA + AK G  V++ AR  ++L+E K  +      +EV     DV D
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLNPNPSVEVEIL--DVTD 58

Query: 99  FDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            +  +  +     E G +D++++N GV     L   S    R  ID N++G+  +++AAL
Sbjct: 59  EERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRETIDTNLLGAAAILEAAL 118

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           P  + +  G    + L+SS A   G
Sbjct: 119 PQFRAKGRGH---LVLISSVAALRG 140

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score = 86.9 bits (216), Expect = 2e-21
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 9/145 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRD 98
             +TG S GIG A+A + AKEGA+V I  RS E+  EE  + ++ A G++      DV D
Sbjct: 1   ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELK-AYGVKALGVVCDVSD 59

Query: 99  FDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            + VK  ++E     GP+D+LV N G+     L     ++   +ID N+ G F++ +A L
Sbjct: 60  REDVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVL 119

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
            ++ K+++G    I  +SS  G +G
Sbjct: 120 RIMIKQRSG---RIINISSVVGLMG 141

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 86.9 bits (216), Expect = 3e-21
 Identities = 54/149 (36%), Positives = 79/149 (53%), Gaps = 8/149 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   +TG +SGIGL +A   AKEGA+V I   + E    A +++Q   G +    + 
Sbjct: 2   LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ-KAGGKAIGVAM 60

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D +A+   +D A    G VD+LV N G+     +E    ++ + MI + + G+F   
Sbjct: 61  DVTDEEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTT 120

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KAALP I K Q GG   I  M+S  G VG
Sbjct: 121 KAALP-IMKAQGGG--RIINMASVHGLVG 146

Length = 258

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score = 86.4 bits (215), Expect = 3e-21
 Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 8/144 (5%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG S GIG A+A + A EGA+V++  RS E   E  + I+ A G   A   ADV D 
Sbjct: 3   ALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEIK-ALGGNAAALEADVSDR 61

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           +AV+  +++     GPVD+LV N G+     L   S ++   +I+VN+ G F++ +A + 
Sbjct: 62  EAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSEEDWDAVINVNLTGVFNVTQAVIR 121

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            + KR++G    I  +SS  G +G
Sbjct: 122 AMIKRRSG---RIINISSVVGLIG 142

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 86.0 bits (214), Expect = 5e-21
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 9/143 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           +TG S GIG A+A   AKEGA+V I    + E  +E  + I+   G +     ADV   +
Sbjct: 10  VTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIK-EEGGDAIAVKADVSSEE 68

Query: 101 AVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            V+  +++     G +D+LV N G+   G +   + +E   +IDVN+ G   + + ALP 
Sbjct: 69  DVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPY 128

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           + KR++G    I  +SS  G +G
Sbjct: 129 MIKRKSG---VIVNISSIWGLIG 148

Length = 247

>gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional

 Score = 85.9 bits (213), Expect = 5e-21
 Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 11/153 (7%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSIL---ARSGEKLEEAKQSIQLATGIEVATYSA 94
           R V ITGGS G+G A+A + A +GA V +L      G    +A  +   A G +    + 
Sbjct: 7   RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAF 66

Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DVRDF A + ALD    E G +D+LV N G+         S++E   +IDVN+ G F++ 
Sbjct: 67  DVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVT 126

Query: 151 KAAL-PLIKKRQNG---GPASIALMSSQAGQVG 179
           +AAL P+I+ R+ G     AS+A +    GQV 
Sbjct: 127 QAALPPMIRARRGGRIVNIASVAGVRGNRGQVN 159

Length = 249

>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional

 Score = 85.8 bits (213), Expect = 6e-21
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 5/130 (3%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
               ITG SSGIG A A   AK G  ++++ARS + LE     ++ +TG++ A YS D+ 
Sbjct: 7   PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR-STGVKAAAYSIDLS 65

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           + +A+   + E     G  DVL+ N G+   G L    L + + +I +N+   F    A 
Sbjct: 66  NPEAIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAV 125

Query: 154 LPLIKKRQNG 163
           LP ++ R  G
Sbjct: 126 LPGMRARGGG 135

Length = 241

>gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional

 Score = 86.0 bits (213), Expect = 8e-21
 Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 9/140 (6%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            ITG   GIG  +A   A+ GA + +L  S E  + A +      G       ADVRD  
Sbjct: 10  LITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCG--RGHRCTAVVADVRDPA 67

Query: 101 AV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           +V    K A ++ G +D+LV N GV   G     S ++    ID+NI G +++ KA LP 
Sbjct: 68  SVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPE 127

Query: 157 IKKRQNGGPASIALMSSQAG 176
           +  R++G    I +MSS  G
Sbjct: 128 MIARKDG---RIVMMSSVTG 144

Length = 263

>gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional

 Score = 85.5 bits (212), Expect = 1e-20
 Identities = 40/129 (31%), Positives = 65/129 (50%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  + V ITG S GIG A A   A EG  + ++AR  + LE     ++ A G++VA ++ 
Sbjct: 5   LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHAL 64

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           D+   +A +    EAG +D+LV N G    G L+       R   ++ + G   + + A 
Sbjct: 65  DLSSPEAREQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAY 124

Query: 155 PLIKKRQNG 163
           P +K R +G
Sbjct: 125 PRMKARGSG 133

Length = 259

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score = 84.9 bits (210), Expect = 2e-20
 Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-- 98
            +TG SSGIG A A   A EGA V+I AR  ++LE     ++ A G +      DV D  
Sbjct: 7   LVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELE-AEGGKALVLELDVTDEQ 65

Query: 99  --FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
               AV+  ++  G +D+LV N G+ + G +E     +   MID N++G  +   AALP 
Sbjct: 66  QVDAAVERTVEALGRLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYTTHAALPH 125

Query: 157 IKKRQNGGPASIALMSSQAGQV 178
              R  G   +I  +SS AG+V
Sbjct: 126 HLLRNKG---TIVNISSVAGRV 144

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 10/144 (6%)

Query: 39  HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
            V ITG SSGIG A A + AK GA++ +  R  E+L+E    +     ++V     DV D
Sbjct: 2   TVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKFPVKVLPLQLDVSD 61

Query: 99  FDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQS--LDEVRLMIDVNIIGSFHMIKA 152
            ++++ AL    +E   +D+LV N G    G    Q   L++   MID N+ G  ++ + 
Sbjct: 62  RESIEAALENLPEEFRDIDILVNNAG-LALGLDPAQEADLEDWETMIDTNVKGLLNVTRL 120

Query: 153 ALPLIKKRQNGGPASIALMSSQAG 176
            LP++  R  G    I  + S AG
Sbjct: 121 ILPIMIARNQG---HIINLGSIAG 141

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR

 Score = 83.2 bits (206), Expect = 5e-20
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TG S GIG+ +A   A++G RVS+  R+ E L     S      +E   Y  D R
Sbjct: 1   KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALSASGG---DVEAVPY--DAR 55

Query: 98  DFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D +     V    D  G +DVLV N G+  P  L   S  E+     +N+I    + +A 
Sbjct: 56  DPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPAELTRAL 115

Query: 154 LPLIKKRQNGGPASIALMSSQAGQ 177
           LP +++  +G    +  ++S +G+
Sbjct: 116 LPALREAGSG---RVVFLNSLSGK 136

This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223

>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11

 Score = 83.2 bits (206), Expect = 6e-20
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 12/149 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI---EVATY 92
             +   ITG SSGIG   A   A+ GAR+++  R  E+LEE +QS  L  G+   ++   
Sbjct: 2   SGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSC-LQAGVSEKKILLV 60

Query: 93  SADVRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD+ + +     + T L + G +D+LV N G+   G  E Q ++E   ++++N+    +
Sbjct: 61  VADLTEEEGQDRIISTTLAKFGRLDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRAVIY 120

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQ 177
           + K A+P + K +      I  +SS AG 
Sbjct: 121 LTKLAVPHLIKTK----GEIVNVSSVAGG 145

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253

>gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional

 Score = 83.1 bits (206), Expect = 8e-20
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 12/144 (8%)

Query: 39  HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
            VFITG SSGIG ALA + A++GA + ++AR  + L+       L     V+ Y+ADVRD
Sbjct: 4   KVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAAR--LPKAARVSVYAADVRD 61

Query: 99  FDAVKTA----LDEAGPVDVLVVNQGVFVPGEL--EVQSLDEVRLMIDVNIIGSFHMIKA 152
            DA+  A    +   G  DV++ N G+ V G L  E + L   R ++D N  G   M+  
Sbjct: 62  ADALAAAAADFIAAHGLPDVVIANAGISV-GTLTEEREDLAVFREVMDTNYFG---MVAT 117

Query: 153 ALPLIKKRQNGGPASIALMSSQAG 176
             P I   +     ++  ++S AG
Sbjct: 118 FQPFIAPMRAARRGTLVGIASVAG 141

Length = 257

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 82.4 bits (204), Expect = 1e-19
 Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 14/145 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITGG+SGIGLALA +  + G  V I  R  E+L EAK          + T   DV D 
Sbjct: 8   VLITGGTSGIGLALARKFLEAGNTVIITGRREERLAEAK-----KELPNIHTIVLDVGDA 62

Query: 100 DAVKTALDE---AGP-VDVLVVNQGVFVPGELEV--QSLDEVRLMIDVNIIGSFHMIKAA 153
           ++V+   +      P +D+L+ N G+  P +L      LD+    ID N+IG   +IKA 
Sbjct: 63  ESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDKADTEIDTNLIGPIRLIKAF 122

Query: 154 LPLIKKRQNGGPASIALMSSQAGQV 178
           LP +KK+     A+I  +SS    V
Sbjct: 123 LPHLKKQPE---ATIVNVSSGLAFV 144

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

 Score = 82.3 bits (204), Expect = 1e-19
 Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 10/143 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV----R 97
           +TG + GIG A A + AK G  V +++R+ EKL+   + I+   G+E  T +AD      
Sbjct: 6   VTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEEKYGVETKTIAADFSAGDD 65

Query: 98  DFDAVKTALDEAGPVDVLVVNQGVF--VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            ++ ++  L E   + +LV N G+   +P        DE++ +I+VN++ +  M +  LP
Sbjct: 66  IYERIEKEL-EGLDIGILVNNVGISHSIPEYFLETPEDELQDIINVNVMATLKMTRLILP 124

Query: 156 LIKKRQNGGPASIALMSSQAGQV 178
            + KR+ G    I  +SS AG +
Sbjct: 125 GMVKRKKGA---IVNISSFAGLI 144

This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 11/121 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITGGSSG+G A+A + A+EGA V I  R+ EKLEEAK  I+   G +V T   DVR+ 
Sbjct: 4   VIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPG-QVLTVQMDVRNP 62

Query: 100 DAVKTALDEA----GPVDVLVVN-QGVFV-PGE-LEVQSLDEVRLMIDVNIIGSFHMIKA 152
           + V+  +++     G +D L+ N  G F+ P E L V   + V   ID+ + G+F+  +A
Sbjct: 63  EDVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSV---IDIVLNGTFYCSQA 119

Query: 153 A 153
            
Sbjct: 120 V 120

Length = 252

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA-D 95
            + V ITG +SGIG   A + AK GA V I  R+ EK EEA   I+  TG         D
Sbjct: 1   GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLD 60

Query: 96  VRDFDAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +    +V+      L     +D+L+ N G+  P      + D   L   VN +G F +  
Sbjct: 61  LSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRL--TKDGFELQFAVNYLGHFLLTN 118

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             LP++K      P+ I  +SS A + G
Sbjct: 119 LLLPVLKAS---APSRIVNVSSIAHRAG 143

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 12/141 (8%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE---KLE----EAKQSIQLATG 86
            +  + +FITG S GIGLA+A +AA++GA + I A++ E   KL      A + I+ A G
Sbjct: 3   SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG 62

Query: 87  IEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
             +     DVRD D V  A+ +A    G +D+ V N         E   +    LM  +N
Sbjct: 63  QALPL-VGDVRDEDQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQIN 121

Query: 143 IIGSFHMIKAALPLIKKRQNG 163
           + G+F + +A LP +KK +N 
Sbjct: 122 VRGTFLVSQACLPHLKKSENP 142

Length = 273

>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG + GIG A+A   A+ GARV+ + R+ E+L E    ++   G   ATY  DV D 
Sbjct: 1   VLVTGAAQGIGYAVARALAEAGARVAAVDRNFEQLLELVADLR-RYGYPFATYKLDVADS 59

Query: 100 DAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            AV         E GP+DVLV   G+   G ++  S ++ +    VN  G F++ +A  P
Sbjct: 60  AAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVSQAVSP 119

Query: 156 LIKKRQNGGPASIALMSSQAGQV 178
            +K+R++G   +I  + S A  V
Sbjct: 120 RMKRRRSG---AIVTVGSNAANV 139

Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250

>gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYS 93
           +  +   +TG + GIG A+A   A+EGA V++        E A  +I     G  V    
Sbjct: 5   LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVP 64

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           ADV D  +V  A+  A    GP+DVLV N G+ V  +    + ++ R    V++ G+++ 
Sbjct: 65  ADVTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNG 124

Query: 150 IKAALPLIKKRQNGGPASIA 169
            +A LP + +R  G   +IA
Sbjct: 125 CRAVLPGMVERGRGSIVNIA 144

Length = 260

>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG +SG+G A+A + A+EG R+++   + E  EE  + ++ A G +      DVRD+
Sbjct: 3   VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRDY 61

Query: 100 DAVKTALD--EA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
             +       E   G +DV+V N GV   G  E  SL++    I +N++G     KA LP
Sbjct: 62  SQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLP 121

Query: 156 LIKKRQNGGPASIALMSSQAG 176
           L K++++G   +IA   S AG
Sbjct: 122 LFKRQKSGRIVNIA---SMAG 139

Length = 270

>gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 81.3 bits (201), Expect = 3e-19
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 11/149 (7%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   +TGG+ G+GLA A     EGA+V +     + L+E  Q+     G     +  
Sbjct: 3   LKGKVAIVTGGARGLGLAHARLLVAEGAKVVL----SDILDEEGQAAAAELGDAARFFHL 58

Query: 95  DVRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D D     V TA +  G +DVLV N G+   G +E  +L+E R ++D+N+ G F   
Sbjct: 59  DVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTTLEEWRRLLDINLTGVFLGT 118

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A +P +K+    G  SI  MSS  G VG
Sbjct: 119 RAVIPPMKE---AGGGSIINMSSIEGLVG 144

This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247

>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional

 Score = 81.2 bits (201), Expect = 4e-19
 Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 10/145 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG S GIG ALA + A+ GA++ + AR+  +L    Q +    G E      DV D 
Sbjct: 4   VIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELA-DHGGEALVVPTDVSDA 62

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGEL-EVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           +A +  ++ A    G +D+LV N G+ +     E+  L     ++ VN +G+ +   AAL
Sbjct: 63  EACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAAL 122

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           P +K  +      I ++SS AG  G
Sbjct: 123 PHLKASR----GQIVVVSSLAGLTG 143

Length = 263

>gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs

 Score = 81.4 bits (201), Expect = 4e-19
 Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 14/148 (9%)

Query: 40  VFITGGSSGIGLALAHQ-AAKEGARVSILA-----RSGEKLEEAKQSIQLATGIEVATYS 93
           V ITG SSGIGL LA + A+    R  + A     +   +L EA  +     G  + T  
Sbjct: 3   VLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGA---LAGGTLETLQ 59

Query: 94  ADVRDFDAVKTALD--EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
            DV D  +V  A++      VDVLV N GV + G LE  S D +  + DVN+ G+  M++
Sbjct: 60  LDVCDSKSVAAAVERVTERHVDVLVCNAGVGLLGPLEALSEDAMASVFDVNVFGTVRMLQ 119

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A LP +K+R +G    I + SS  G  G
Sbjct: 120 AFLPDMKRRGSG---RILVTSSVGGLQG 144

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score = 80.4 bits (199), Expect = 6e-19
 Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 39  HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
            V ITGG SGIG  LA + AK GA+V IL  + +  EE   ++    G +V  Y  DV  
Sbjct: 1   IVLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNV-RKAGGKVHYYKCDVSK 59

Query: 99  FDAVKTALD----EAGPVDVLVVNQGVFVPGE--LEVQSLDEVRLMIDVNIIGSFHMIKA 152
            + V  A      E G V +L+ N GV V G+  LE+   +E+    +VN +  F   KA
Sbjct: 60  REEVYEAAKKIKKEVGDVTILINNAGV-VSGKKLLELPD-EEIEKTFEVNTLAHFWTTKA 117

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            LP + +R +G    I  ++S AG + 
Sbjct: 118 FLPDMLERNHG---HIVTIASVAGLIS 141

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 80.5 bits (199), Expect = 9e-19
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ +   +TG +SGIG A+A +   EGARV I      +   A     L  G      S 
Sbjct: 4   LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA----ALEIGPAAIAVSL 59

Query: 95  DVRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV   D     V  A++  G +D+L  N  +F    +   S D    +  VN+ G F ++
Sbjct: 60  DVTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLM 119

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A    + ++  GG   I  M+SQAG+ G
Sbjct: 120 QAVARHMVEQGRGG--KIINMASQAGRRG 146

Length = 257

>gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 79.8 bits (197), Expect = 1e-18
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
            K +   ITGG+ GIG A+A    +EGA+V++L  S E   +  +      G+   T   
Sbjct: 5   FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREK----GVF--TIKC 58

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV + D VK + +      G VDVLV N G+      E    ++   MI +N+ G+ +  
Sbjct: 59  DVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTT 118

Query: 151 KAALPLIKKRQNGGPASIALMSSQAG 176
              LPL+K  +NG   +I  ++S AG
Sbjct: 119 YEFLPLLKLSKNG---AIVNIASNAG 141

Length = 255

>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
            +   +TG +SGIGLA+A   A  GA V +     E  E A +    A G  V    ADV
Sbjct: 1   GKTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVAGDA-GGSVIYLPADV 59

Query: 97  RDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
              D +   +     E G +D+LV N G+     +E    ++   +I V +  +FH I+A
Sbjct: 60  TKEDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAVMLTSAFHTIRA 119

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
           ALP +KK+  G    I  ++S  G V 
Sbjct: 120 ALPHMKKQGWG---RIINIASAHGLVA 143

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255

>gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATY 92
           +K +   ITGG SGIG A+A   A+EGA V+I  L    +  EE K+ I+   G +    
Sbjct: 24  LKGKKALITGGDSGIGRAVAIAFAREGADVAINYLPEEEDDAEETKKLIE-EEGRKCLLI 82

Query: 93  SADVRD--F--DAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSF 147
             D+ D  F  D VK  + E G +D+LV N     P E +E  + +++      NI   F
Sbjct: 83  PGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESIEDITTEQLEKTFRTNIFSMF 142

Query: 148 HMIKAALPLIKK 159
           ++ KAALP +KK
Sbjct: 143 YLTKAALPHLKK 154

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270

>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional

 Score = 79.6 bits (197), Expect = 1e-18
 Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           +FITG +SGIG A A   A EG RV     +   L      +         T + DV D 
Sbjct: 4   IFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL---GAGNAWTGALDVTDR 60

Query: 100 DAVKTALDE-----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            A   AL +      G +DVL  N G+   G  E   L+    +ID+N+ G  +   AAL
Sbjct: 61  AAWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAAL 120

Query: 155 PLIKK 159
           P +K 
Sbjct: 121 PYLKA 125

Length = 260

>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 11/145 (7%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEK---LEEAKQSIQLATGIEVATYSADVR 97
            +TG SSG GL    + AK+G  V    R+ EK   L      + L   I+V     DV 
Sbjct: 7   IVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQ--QLDVT 64

Query: 98  DFDAVKT---ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           D +++      L E G +D+LV N G    G +E   ++E R   + N+ G+  + +A L
Sbjct: 65  DQNSIHNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVL 124

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           P ++K+++G    I  +SS +G+VG
Sbjct: 125 PYMRKQKSG---KIINISSISGRVG 146

Length = 280

>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional

 Score = 79.2 bits (196), Expect = 3e-18
 Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
             ++ + V ITGG+ GIGLA A   A  GARV+I        +E    + L  G      
Sbjct: 1   DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVG-----G 55

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
             DV D  +    LD      GP+DVLV N GV   G    +     R ++DVN+ G   
Sbjct: 56  PLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVIL 115

Query: 149 MIKAALPLIKKRQNGGPASIALMSS 173
             K A P +  R  G   ++A ++ 
Sbjct: 116 GSKLAAPRMVPRGRGHVVNVASLAG 140

Length = 273

>gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           +TG S GIG A+A + A++GA V +  A S    EE    I+ A G +     ADV D  
Sbjct: 8   VTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIE-AAGGKAIAVQADVSDPS 66

Query: 101 AVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            V    D A    G VD+LV N GV +   +   S +E   M  VN  G+F +++ A   
Sbjct: 67  QVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDRMFTVNTKGAFFVLQEAA-- 124

Query: 157 IKKRQNGGPASIALMSSQAG 176
             KR   G   I + SS   
Sbjct: 125 --KRLRDGGRIINISSSLTA 142

1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4

 Score = 78.3 bits (193), Expect = 3e-18
 Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 11/142 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG S GIG A A     EG RV I AR   +L  A           V   + DVRD 
Sbjct: 3   ALVTGASRGIGEATARLLHAEGYRVGICARDEARLAAAAA----QELEGVLGLAGDVRDE 58

Query: 100 DAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
             V+ A+D      G +D LV N GV V   +E  + +E RL++D N+ G+F+ I  A P
Sbjct: 59  ADVRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFYCIHKAAP 118

Query: 156 LIKKRQNGGPASIALMSSQAGQ 177
            + +R  G   +I  + S AG+
Sbjct: 119 ALLRRGGG---TIVNVGSLAGK 137

This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226

>gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K     +TGG+SG+GLA   +   +GA+V IL       E          G        D
Sbjct: 1   KGLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGET-----VAKLGDNCRFVPVD 55

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGEL------EVQSLDEVRLMIDVNIIG 145
           V     VK AL  A    G +D++V   G+ V  +       +  SL+  + +I+VN+IG
Sbjct: 56  VTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIG 115

Query: 146 SFHMIKAALPLIKKRQ--NGGP-------ASIALMSSQAGQVG 179
           +F++I+ A   + K +   GG        AS+A    Q GQ  
Sbjct: 116 TFNVIRLAAGAMGKNEPDQGGERGVIINTASVAAFEGQIGQAA 158

HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252

>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 51/148 (34%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   ITGG+SGIGL  A Q   EGARV+I  R    LE A+  +    G       AD
Sbjct: 5   QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL----GESALVIRAD 60

Query: 96  VRDFDAVKT---ALDEAGP-VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
             D  A K    AL EA   +D + +N GV     LE           + N+ G + +I+
Sbjct: 61  AGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQ 120

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A LPL+       PASI L  S    +G
Sbjct: 121 ALLPLLAN-----PASIVLNGSINAHIG 143

Length = 249

>gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

 Score = 77.7 bits (192), Expect = 8e-18
 Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 23/154 (14%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  +   ITGG SGIG AL  +   EGARV++L RS EKL   +Q      G  V     
Sbjct: 4   LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ----RFGDHVLVVEG 59

Query: 95  DVRDFD----AVKTALDEAGPVDVLVVNQGVF--------VPGELEVQSLDEVRLMIDVN 142
           DV  +     AV   +D  G +D  V N G++        +P E    + DE   + +VN
Sbjct: 60  DVTSYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDE---IFNVN 116

Query: 143 IIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           + G     KAALP +K        S+    S + 
Sbjct: 117 VKGYLLGAKAALPALKASG----GSMIFTLSNSS 146

Length = 263

>gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional

 Score = 77.7 bits (192), Expect = 9e-18
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K + V ++G   G+G  LA +AA+ GA V + AR+ E+L+E    I    G        D
Sbjct: 4   KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID-DLGRRALAVPTD 62

Query: 96  VRDFDA----VKTALDEAGPVDVLVVN---QGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           + D D     V  AL+  G VD LV N        P  L        R +I++N++G+  
Sbjct: 63  ITDEDQCANLVALALERFGRVDALVNNAFRVPSMKP--LADADFAHWRAVIELNVLGTLR 120

Query: 149 MIKAALPLIKKRQNG---GPASIALMSSQAGQ 177
           + +A  P + +   G      S+ L  SQ   
Sbjct: 121 LTQAFTPALAE-SGGSIVMINSMVLRHSQPKY 151

Length = 258

>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGGS G+GL +A    + GARV + AR  E+LEEA   ++ A GI+    +ADV D   
Sbjct: 17  VTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE-ALGIDALWIAADVADEAD 75

Query: 102 VK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           ++      L+  G VD+LV N G       E   ++    ++++N+ G F + +A     
Sbjct: 76  IERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRS 135

Query: 158 KKRQNGGP----ASIA 169
              +  G     AS+A
Sbjct: 136 MIPRGYGRIINVASVA 151

Length = 259

>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA-DV 96
           +  F+TG +SGIG A A + A +GA + +  R  + L +     + A G  V  + A D+
Sbjct: 1   KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR-ALGGTVPEHRALDI 59

Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            D+DAV     +     G +DV++   G+   G ++  + ++ R M+DVN++G  H+I+ 
Sbjct: 60  SDYDAVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIET 119

Query: 153 ALP-LIKKRQNGGPASIALMSSQAGQVG 179
            +P ++   + G    +  +SS AG V 
Sbjct: 120 FVPPMVAAGRGG---HLVNVSSAAGLVA 144

Length = 272

>gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 31  VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA 90
           +  P+    V ITG SSGIG A A   A+ GAR+ + AR  E L+   +  + A G EV 
Sbjct: 1   MMGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR-ALGAEVL 59

Query: 91  TYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
               DV D D VK     A    G +DV V N GV   G  E   ++    +I  N+IG 
Sbjct: 60  VVPTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGY 119

Query: 147 FHMIKAALPLIKKRQNG 163
                AALP+ KK+ +G
Sbjct: 120 MRDAHAALPIFKKQGHG 136

Length = 330

>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 76.3 bits (188), Expect = 3e-17
 Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 17/140 (12%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEK------------LEEAKQSIQLATGI 87
            F+TG S GIG A+A + AK GA V + A++  +            +EE  + I+ A G 
Sbjct: 6   AFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEAAGGQ 65

Query: 88  EVATYSADVRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
            +     DVRD D     V+  +D+ G +D+LV N G      +E        LM  VN+
Sbjct: 66  ALPI-VVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPAKRFDLMQRVNL 124

Query: 144 IGSFHMIKAALPLIKKRQNG 163
            G++ + +AALP + K   G
Sbjct: 125 RGTYLLSQAALPHMVKAGQG 144

This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 14/143 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG SSGIG A A + A +G  V   AR  +K+E+       + G+     S DV D 
Sbjct: 6   ALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-----SLGVHP--LSLDVTDE 58

Query: 100 D----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
                AV T + E G +DVLV N G    G +E   +DE R   +VN+ G+  + +  LP
Sbjct: 59  ASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLP 118

Query: 156 LIKKRQNGGPASIALMSSQAGQV 178
            ++ +++G    I  +SS  G++
Sbjct: 119 HMRAQRSG---RIINISSMGGKI 138

Length = 273

>gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional

 Score = 75.8 bits (186), Expect = 6e-17
 Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R   ITGG+SGIGLA   + A+ GARV +       L +A   ++ A G +V     DVR
Sbjct: 7   RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR-AEGFDVHGVMCDVR 65

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
             + V    DEA    G VDV+  N G+ V G +   + D+ R +IDV++ GS H ++A 
Sbjct: 66  HREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAF 125

Query: 154 LPLIKKRQNGGPASIALMSSQAGQV 178
           LP + ++  GG   +   +S AG V
Sbjct: 126 LPRLLEQGTGG--HVVFTASFAGLV 148

Length = 275

>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

 Score = 77.2 bits (190), Expect = 7e-17
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 28  PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI--QLAT 85
           PK     +  R  F+TGG+ GIG   A + A EGA V +   + E  E     I  Q   
Sbjct: 407 PKEK--TLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGA 464

Query: 86  GIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDV 141
           G  VA    DV D  AVK A  +     G VD++V N G+      E  +L E +L +D+
Sbjct: 465 GRAVAL-KMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDI 523

Query: 142 NIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
              G F + + A   ++++  GG  +I  ++S+  
Sbjct: 524 LATGYFLVAREAFRQMREQGLGG--NIVFIASKNA 556

Length = 676

>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional

 Score = 75.5 bits (186), Expect = 7e-17
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 24  LIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL 83
           LI RP    + +  + + +TG SSGIG A A Q A+ GA V  +AR  + L+     I  
Sbjct: 27  LINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI-T 85

Query: 84  ATGIEVATYSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLD---EVR 136
             G +      D+ D DA    V       G VD+L+ N G  +   L  +SLD   +V 
Sbjct: 86  RAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIRRPLA-ESLDRWHDVE 144

Query: 137 LMIDVNIIGSFHMIKAALPLIKKRQNG 163
             + +N      +I+   P + +R +G
Sbjct: 145 RTMVLNYYAPLRLIRGLAPGMLERGDG 171

Length = 293

>gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional

 Score = 75.1 bits (185), Expect = 8e-17
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   ITG S GIG A+A   AK GA +     + E +++   + +   GIE   Y  
Sbjct: 8   LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYR-ELGIEAHGYVC 66

Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D D V+  +     E G +D+LV N G+     +   S ++ R +ID+++   F + 
Sbjct: 67  DVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVS 126

Query: 151 KAALPLIKKRQNGGPASIALMSSQAG 176
           KA +P + K+ +G   +I  M S+ G
Sbjct: 127 KAVIPSMIKKGHGKIINICSMMSELG 152

Length = 265

>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+ V +TG S GIG ALA   A  GAR+ ++ R+ EKLE     +            A
Sbjct: 3   LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWV--VA 60

Query: 95  DVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           D+      +  L  A   G ++VL+ N GV     LE Q  + +  ++ +N+     + +
Sbjct: 61  DLTSEAGREAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTR 120

Query: 152 AALPLIKKRQNG 163
           A LPL++ + + 
Sbjct: 121 ALLPLLRAQPSA 132

Length = 263

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATY-SADVR 97
           V ITG S GIGL L  Q    G   V    R      E      L            DV 
Sbjct: 1   VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAA---LGASHSRLHILELDVT 57

Query: 98  DF-----DAVKTALDEAGPVDVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSFHMIK 151
           D      +AV   L +AG +DVL+ N G+        +   +++  +  VN++G   + +
Sbjct: 58  DEIAESAEAVAERLGDAG-LDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLLTQ 116

Query: 152 AALPLIKKRQNGGPASIALMSSQAG 176
           A LPL+ K   G  A I  +SS+ G
Sbjct: 117 AFLPLLLK---GARAKIINISSRVG 138

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 19/137 (13%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K     ITGG SG+G AL  +   EGA+V++L RS EK+ E +       G  V     
Sbjct: 2   LKGEVALITGGGSGLGRALVERFVAEGAKVAVLDRSAEKVAELRA----DFGDAVVGVEG 57

Query: 95  DVRDFD----AVKTALDEAGPVDVLVVNQGVF--------VPGELEVQSLDEVRLMIDVN 142
           DVR       AV   ++  G +D  + N G++        +P E   ++ DE   +  +N
Sbjct: 58  DVRSLADNERAVARCVERFGKLDCFIGNAGIWDYSTSLVDIPEEKLDEAFDE---LFHIN 114

Query: 143 IIGSFHMIKAALPLIKK 159
           + G     KAALP +  
Sbjct: 115 VKGYILGAKAALPALYA 131

cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  R   +TG S GIG ALA   A+ GA V +  R   KL  A +S++   G+     + 
Sbjct: 8   LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK-GQGLSAHALAF 66

Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D DAV+ A+D    E GP+D+LV N G+     LE    D    ++  NI   F++ 
Sbjct: 67  DVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVG 126

Query: 151 KAALPLIKKRQNGGPASIA 169
           +A    +  R  G   +IA
Sbjct: 127 QAVARHMIARGAGKIINIA 145

Length = 255

>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 7/145 (4%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   ITGG+SGIGLA A    K+GA+V+IL R+ E    A +   +   ++      DV 
Sbjct: 1   KVAIITGGASGIGLATAKLLLKKGAKVAILDRN-ENPGAAAELQAINPKVKATFVQCDVT 59

Query: 98  DFD----AVKTALDEAGPVDVLVVNQGVFVP-GELEVQSLDE-VRLMIDVNIIGSFHMIK 151
            ++    A K A+++ G VD+L+ N G+      L    L       IDVN+ G  +   
Sbjct: 60  SWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKTIDVNLTGVINTTY 119

Query: 152 AALPLIKKRQNGGPASIALMSSQAG 176
            AL  + K + G    I  + S AG
Sbjct: 120 LALHYMDKNKGGKGGVIVNIGSVAG 144

This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9

 Score = 72.9 bits (179), Expect = 3e-16
 Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 11/145 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           +FITG +SGIG   A   A+ G  V +     + L      +       V   + DV D 
Sbjct: 3   IFITGAASGIGRETALLFARNGWFVGLYDIDEDGLAALAAELG---AENVVAGALDVTDR 59

Query: 100 DAVKTALDE-----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            A   AL +      G +D L  N GV   G  E   L     M+D+N+ G  +   AAL
Sbjct: 60  AAWAAALADFAAATGGRLDALFNNAGVGRGGPFEDVPLAAHDRMVDINVKGVLNGAYAAL 119

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           P +K       A +   +S +   G
Sbjct: 120 PYLKATPG---ARVINTASSSAIYG 141

This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227

>gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE---KLE----EAKQSIQLATGI 87
           +  + +FITG S GIG A+A +AA++GA V I A++ E   KL      A + I+ A G 
Sbjct: 1   LAGKTLFITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEIEAAGGK 60

Query: 88  EVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
            +     D+RD D V+ A+++A    G +D+LV N             +    LM+ VN 
Sbjct: 61  ALPC-IVDIRDEDQVRAAVEKAVEKFGGIDILVNNASAISLTGTLDTPMKRYDLMMGVNT 119

Query: 144 IGSFHMIKAALPLIKKRQN 162
            G++   KA LP +KK +N
Sbjct: 120 RGTYLCSKACLPYLKKSKN 138

This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 11/142 (7%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           FITG SSG G  +  +    G RV+   R  + L++ K   +    + V     DV D  
Sbjct: 6   FITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA--RYGDRLWVLQL--DVTDSA 61

Query: 101 AVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           AV+  +D A    G +DV+V N G  + G  E  S  ++R  ID N+IGS  +I+AALP 
Sbjct: 62  AVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPH 121

Query: 157 IKKRQNGGPASIALMSSQAGQV 178
           + +RQ GG   I  +SS+ GQ+
Sbjct: 122 L-RRQGGG--RIVQVSSEGGQI 140

Length = 276

>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TG + G+G A A   A+ GA V+       +  E   +++ A G      +AD+ 
Sbjct: 8   KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE-AAGGRAHAIAADLA 66

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D  +V+   D A    G +D LV N G+          +D    +++VN+ G+F M++AA
Sbjct: 67  DPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAA 126

Query: 154 LPLIKKRQNGGPASIALMSSQAGQ 177
           LP +  R +G    + L S  A  
Sbjct: 127 LPHL--RDSGRGRIVNLASDTALW 148

Length = 250

>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs

 Score = 72.9 bits (179), Expect = 5e-16
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             IT  + GIG A+A   A+EGA V     + EKL+E      L  G  + T   DV D 
Sbjct: 5   ALITAAAQGIGRAIALAFAREGANVIATDINEEKLKE------LERGPGITTRVLDVTDK 58

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK 159
           + V     E G +DVL    G    G +     D+    +++N+   + MIKA LP +  
Sbjct: 59  EQVAALAKEEGRIDVLFNCAGFVHHGSILDCEDDDWDFAMNLNVRSMYLMIKAVLPKMLA 118

Query: 160 RQNGGPASIALMSSQAGQV 178
           R++G   SI  MSS A  +
Sbjct: 119 RKDG---SIINMSSVASSI 134

Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241

>gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family

 Score = 72.9 bits (179), Expect = 5e-16
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 20/156 (12%)

Query: 41  FITGGSSGIGLALAHQAAKEGAR-------------VSILARSGEKLEEAKQSIQLATGI 87
           FITG + G G A A + A EGA               +    + E L+E  + ++ A G 
Sbjct: 7   FITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETARLVE-ALGR 65

Query: 88  EVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
           +V    ADVRD   V+  +++     G +DV+V N GV   G     S ++   ++D+N+
Sbjct: 66  KVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQWDTVLDINL 125

Query: 144 IGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            G +   KA +P + +R NGG  SI + SS AG   
Sbjct: 126 TGVWRTCKAVVPHMIERGNGG--SIIITSSVAGLKA 159

Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265

>gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR

 Score = 73.0 bits (179), Expect = 6e-16
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 10/148 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
               +TG +SGIGLA+A +  KEG RV + AR  E L    + ++   G+E    + DVR
Sbjct: 4   EVALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELR-EAGVEADGRTCDVR 62

Query: 98  DFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSL-DEVRL-MIDVNIIGSFHMIK 151
                   V  A+   GP+DVLV N G    G      L DE+ L +++ N+ G F + K
Sbjct: 63  SVPEIEALVAAAVARYGPIDVLVNNAG--RSGGGATAELADELWLDVVETNLTGVFRVTK 120

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             L      +  G   I  ++S  G+ G
Sbjct: 121 EVLKAGGMLER-GTGRIINIASTGGKQG 147

Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258

>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs

 Score = 72.8 bits (179), Expect = 6e-16
 Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TG SSGIG A+A + A  GA V +  RS E   E       A G +     ADV   + 
Sbjct: 8   VTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIKAVGGKAIAVQADVSKEED 67

Query: 102 VK----TALDEAGPVDVLVVN---QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           V     +A+ E G +D+LV N   QG     E+   +L++   +IDVN+ G F   + A+
Sbjct: 68  VVALFQSAIKEFGTLDILVNNAGLQGDASSHEM---TLEDWNKVIDVNLTGQFLCAREAI 124

Query: 155 PLIKKRQNGGPASIALMSS 173
              +K +  G   I  MSS
Sbjct: 125 KRFRKSKIKG--KIINMSS 141

GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated

 Score = 72.5 bits (178), Expect = 7e-16
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-- 98
            +TG   GIG A+A +  ++G +V+I+  + E  + A   +    G  +A   ADV D  
Sbjct: 6   LVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIA-VKADVSDRD 64

Query: 99  --FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
             F AV+  +D  G ++V+V N GV     +E  + ++   + ++N+ G    I+AA   
Sbjct: 65  QVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEA 124

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
            KK  +GG   I   +SQAG VG
Sbjct: 125 FKKLGHGG--KIINATSQAGVVG 145

Length = 256

>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs

 Score = 72.1 bits (177), Expect = 7e-16
 Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
            +   +TG   GIG A     AK GARV  ++R+   L+     ++   GIE      D+
Sbjct: 7   GKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADLD---SLVRECPGIE--PVCVDL 61

Query: 97  RDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            D+DA + AL   GPVD+LV N  V +       + +      DVN+    H+ +     
Sbjct: 62  SDWDATEEALGSVGPVDLLVNNAAVAILQPFLEVTKEAFDRSFDVNVRAVIHVSQIVARG 121

Query: 157 IKKRQNGGPASIALMSSQAGQV 178
           +  R  G P SI  +SSQA Q 
Sbjct: 122 MIAR--GVPGSIVNVSSQASQR 141

Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244

>gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional

 Score = 72.5 bits (178), Expect = 8e-16
 Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  R   +TG  SGIG A A   A+EGARV +  R  E  E    +I  A G        
Sbjct: 3   LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAI--AAGGRAFARQG 60

Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV   +AV+  +D      G +DVLV N G    G +      +   ++ VN+ G F   
Sbjct: 61  DVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWA 120

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           K A+P+++++  G   SI   +SQ    G
Sbjct: 121 KYAIPIMQRQGGG---SIVNTASQLALAG 146

Length = 252

>gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 72.3 bits (178), Expect = 8e-16
 Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+ + ITGG+ G+G A+A   A++GA+++++  + EKLEEA        G EV  Y+A
Sbjct: 3   LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL-GTEVRGYAA 61

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGEL------EVQ---SLDEVRLMIDV 141
           +V D + V+    +     G ++ L+ N G+   G L      +V    SL++ + +IDV
Sbjct: 62  NVTDEEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDV 121

Query: 142 NIIGSF--------HMIKAA 153
           N+ G F         MI++ 
Sbjct: 122 NLTGVFLCGREAAAKMIESG 141

Length = 253

>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-- 98
           FITG S G G A    A + G RV   AR    L +  +      G  +   + DV D  
Sbjct: 7   FITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY----GDRLLPLALDVTDRA 62

Query: 99  --FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
             F AV+TA++  G +D++V N G  + G +E  +  E R  ID N  G+  + +A LP 
Sbjct: 63  AVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPY 122

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           ++++++G    I  +SS  G   
Sbjct: 123 LREQRSG---HIIQISSIGGISA 142

Length = 275

>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVAT 91
           I ++ R   +TGGSSGIGLA      + GA V+I  R  E+L  A+  ++    G  +  
Sbjct: 4   IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLA 63

Query: 92  YSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
              DV D   V           G VD+LV N G          + D  R  +++      
Sbjct: 64  ARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVI 123

Query: 148 HMIKAALPLIKKRQNG 163
           +  +A LPL++     
Sbjct: 124 NPTRAFLPLLRASAAA 139

Length = 265

>gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVA-TYSADVRD 98
           FITG + G+G A+A + A++GA+V +        L+     I  A G  VA     DV D
Sbjct: 3   FITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTD 62

Query: 99  FDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
               +  L +A    G + VLV N GV   G +E   LDE R ++ +N+   F   K AL
Sbjct: 63  EAQWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHAL 122

Query: 155 PLIKKRQNGGPASIALMSSQAG 176
           P ++  Q   PASI  +SS A 
Sbjct: 123 PYLRASQ---PASIVNISSVAA 141

Length = 251

>gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           + GGSSGIGLALA   A EGARV+I +RS ++L  A +++       V T + D+ D  A
Sbjct: 2   VVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAP--VRTAALDITDEAA 59

Query: 102 VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           V     EAGP D +V+       G +    L   +  +D    G++ + +AA
Sbjct: 60  VDAFFAEAGPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAA 111

Length = 230

>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDF 99
           +TG +SGIGL +A   A  GA + +L   G+  E       LA   G++V  + AD+   
Sbjct: 7   VTGSTSGIGLGIARALAAAGANI-VLNGFGDAAEIEAVRAGLAAKHGVKVLYHGADLSKP 65

Query: 100 ----DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
               D V  A  + G VD+LV N G+     +E    ++   +I +N+   FH  + ALP
Sbjct: 66  AAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDFPTEKWDAIIALNLSAVFHTTRLALP 125

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +KK+  G   +IA   S  G V 
Sbjct: 126 HMKKQGWGRIINIA---SVHGLVA 146

DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSA 94
           KD+ V ITGG SG+GLA A + AKEGA++S++  + E LE AK ++ ++A   EV    A
Sbjct: 2   KDKVVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKA 61

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSFHM 149
           DV D   V+  +D      G +D    N G+     L      DE   ++ +N+ G F+ 
Sbjct: 62  DVSDEAQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTEDFGADEFDKVVSINLRGVFYG 121

Query: 150 IKAALPLIKKRQNG 163
           ++  L +++++ +G
Sbjct: 122 LEKVLKVMREQGSG 135

Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 9/150 (6%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  ++ +   +TGG+ GIG A+  + A  GA V   AR+ ++L+E     +   G +V  
Sbjct: 1   RWNLEGKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTEWREK-GFKVEG 59

Query: 92  YSADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
              DV      +  +D       G +++LV N G  +  E +  + ++  L++  N   +
Sbjct: 60  SVCDVSSRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNFEAA 119

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           +H+ + A PL+K   NG   +I  +SS AG
Sbjct: 120 YHLSRLAHPLLKASGNG---NIVFISSVAG 146

This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251

>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional

 Score = 69.4 bits (170), Expect = 7e-15
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 4/142 (2%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF-- 99
           +TG   GIG A+A +   +G RV     SG    +        T  +V     DV D   
Sbjct: 7   VTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEE 66

Query: 100 --DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
             +A+    +E GPVD+LV N G+      +  S  E   +I+ N+   F++ +     +
Sbjct: 67  CAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAM 126

Query: 158 KKRQNGGPASIALMSSQAGQVG 179
            ++  G   +I+ ++   GQ G
Sbjct: 127 CEQGYGRIINISSVNGLKGQFG 148

Length = 245

>gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 10/132 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
               + V + GGS GIG A+  +   +GA V    A S +  E       LA        
Sbjct: 3   AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAER------LAQETGATAV 56

Query: 93  SADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
             D  D DAV   + ++G +D+LVVN G+ V G+      D++  +  +NI   +H   A
Sbjct: 57  QTDSADRDAVIDVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYH---A 113

Query: 153 ALPLIKKRQNGG 164
           ++   ++   GG
Sbjct: 114 SVEAARQMPEGG 125

Length = 237

>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + R   +TG S GIG A+A    + G +V   AR  +K+E      Q A    +  Y  D
Sbjct: 5   RGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSAGYPTLFPYQCD 64

Query: 96  VRD-------FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           + +       F A++T   +   VDV + N G+  P  L     +  + M DVN++    
Sbjct: 65  LSNEEQILSMFSAIRT---QHQGVDVCINNAGLARPEPLLSGKTEGWKEMFDVNVLALSI 121

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAG 176
             + A   +K+R N     I  ++S +G
Sbjct: 122 CTREAYQSMKER-NVDDGHIININSMSG 148

Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG SSGIG A A + A+ G RV   +R+  +       I     +E+     DV D 
Sbjct: 7   ALVTGASSGIGRATAEKLARAGYRVFGTSRNPARA----APIPGVELLEL-----DVTDD 57

Query: 100 D----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
                AV   +  AG +DVLV N GV + G  E  S+ + + + D N+ G   M +A LP
Sbjct: 58  ASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLP 117

Query: 156 LIKKRQNG 163
            ++ + +G
Sbjct: 118 HMRAQGSG 125

Length = 270

>gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             + G   G+G A+A + A EG  V++ AR   KLE     I    G        D RD 
Sbjct: 2   AAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDIIRDAGGSAKAVPTDARDE 61

Query: 100 DAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           D V    D    E GP++VLV N G  V   +   +      + ++   G F   + A  
Sbjct: 62  DEVIALFDLIEEEIGPLEVLVYNAGANVWFPILETTPRVFEKVWEMAAFGGFLAAREAAK 121

Query: 156 LIKKRQNG 163
            +  R  G
Sbjct: 122 RMLARGRG 129

This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238

>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 10/145 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVA--- 90
           ++ + V ITGGS+G+G A+A +  KE A+V I  RS E+   +  + I+ A G  +A   
Sbjct: 5   LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKG 64

Query: 91  --TYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
             T  +DV +   ++TA+ E G +DV++ N G+         SL++   +I+ N+ G+F 
Sbjct: 65  DVTVESDVVNL--IQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFL 122

Query: 149 MIKAALPLIKKRQNGGPASIALMSS 173
             + A+    +  +    +I  MSS
Sbjct: 123 GSREAIKYFVE--HDIKGNIINMSS 145

Length = 261

>gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVR 97
             ITG + GIG A+A + A +G  + +   + E+   AK +IQ  +  G       ADV 
Sbjct: 5   AIITGAAQGIGRAIAERLAADGFNIVLADLNLEEA--AKSTIQEISEAGYNAVAVGADVT 62

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D D V+  +D+A    G  DV+V N G+     L   + ++++ +  VN+ G    I+AA
Sbjct: 63  DKDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKKVYAVNVFGVLFGIQAA 122

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
               KK  +GG   I   SS AG  G
Sbjct: 123 ARQFKKLGHGG--KIINASSIAGVQG 146

2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

 Score = 68.8 bits (168), Expect = 1e-14
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+   +TGG  GIG A   + A+EGA+V++   + E  E+    I+ A G     ++ 
Sbjct: 1   LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIR-AKGGNAQAFAC 59

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+ D D+V TA+  A    GPVDVLV N G    G            +I +N+ G+ HM 
Sbjct: 60  DITDRDSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMH 119

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
            A LP + +R  G   +IA   S A +VG
Sbjct: 120 HAVLPGMVERGAGRIVNIA---SDAARVG 145

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250

>gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 10/146 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V ITGG  G+G A A   A  GARV+++ R    L +    +  A  + +     
Sbjct: 5   LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV-PADALRIG--GI 61

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+ D  A + A+DE     G +D LV   G FV G +     D    M  VN+  + +  
Sbjct: 62  DLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNAS 121

Query: 151 KAALPLIKKRQNGGPASIALMSSQAG 176
           KAALP +    +GG   I  + + A 
Sbjct: 122 KAALPALT--ASGG-GRIVNIGAGAA 144

Length = 239

>gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R   +TGG  GIG A+  + AK+G RV+      E+  EA    Q A G +      DV 
Sbjct: 1   RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVS 60

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVF---VPGELEVQSLDEVRLMIDVNIIGSFHMI 150
            F++ K A+ +     GP+DVLV N G+       ++  +    V   ID N+   F++ 
Sbjct: 61  SFESCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAV---IDTNLNSVFNVT 117

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +  +  +++R  G   +I+ ++ Q GQ G
Sbjct: 118 QPVIDGMRERGWGRIINISSVNGQKGQFG 146

This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242

>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + ITGG+SGIGLALA +  + G  V I  R+ E+L EAK         E+ T   DV D 
Sbjct: 8   ILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENP-----EIHTEVCDVADR 62

Query: 100 DA----VKTALDEAGPVDVLVVNQGVFVPGELEV--QSLDEVRLMIDVNIIGSFHMIKAA 153
           D+    V+    E   ++VL+ N G+    +L      LD+    I  N++    +    
Sbjct: 63  DSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALL 122

Query: 154 LPLIKKRQNG 163
           LP + ++   
Sbjct: 123 LPHLLRQPEA 132

Length = 245

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
             +TG + GIG  +  Q AK G    IL AR  E+ + A + ++ A G+ V  +  DV D
Sbjct: 3   ALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLR-AEGLSVRFHQLDVTD 61

Query: 99  FDAVKTALDEA----GPVDVLVVNQGVFVPG-ELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
             +++ A D      G +D+LV N G+   G +    + ++ R  +  N  G+  + +A 
Sbjct: 62  DASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVTQAL 121

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
           LPL+KK   G    I  +SS  G + 
Sbjct: 122 LPLLKKSPAG---RIVNVSSGLGSLT 144

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated

 Score = 67.9 bits (166), Expect = 3e-14
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+   +TGGS GIG A+ ++  +EG+ V       E         ++           
Sbjct: 4   LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK-EPSYNDVDYFKV----------- 51

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV + + V   +D      G +D+LV N G+   G +     DE   +I+VN+ G F M 
Sbjct: 52  DVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMS 111

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQ 177
           K  +P + K+  G   +IA + S A  
Sbjct: 112 KYTIPYMLKQDKGVIINIASVQSFAVT 138

Length = 258

>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 11/133 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATY 92
           +K +   ITGG SGIG A+A   AKEGA ++I  L    +   E KQ ++   G++    
Sbjct: 44  LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDA-NETKQRVE-KEGVKCLLI 101

Query: 93  SADVRD--F--DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL--MIDVNIIGS 146
             DV D  F  DAV+  + E G +D+LV N     P +  ++ +   +L      NI   
Sbjct: 102 PGDVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQ-SLEDITAEQLDKTFKTNIYSY 160

Query: 147 FHMIKAALPLIKK 159
           FHM KAALP +K+
Sbjct: 161 FHMTKAALPHLKQ 173

Length = 290

>gnl|CDD|132368 TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

 Score = 67.5 bits (165), Expect = 5e-14
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 19/133 (14%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K   V +TGG+SG+G A+  +   EGARV++L +S   L+E    ++ A G  V     
Sbjct: 3   LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQE----LEAAHGDAVVGVEG 58

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVF--------VPGELEVQSLDEVRLMIDVN 142
           DVR  D  K A+       G +D L+ N G++        +P +   ++ DE   +  +N
Sbjct: 59  DVRSLDDHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDE---VFHIN 115

Query: 143 IIGSFHMIKAALP 155
           + G    +KAALP
Sbjct: 116 VKGYLLAVKAALP 128

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. Length = 262

>gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional

 Score = 67.4 bits (165), Expect = 6e-14
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 18/166 (10%)

Query: 28  PKPVRIP----IKDRHVFITGGS-SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ 82
             P  +P    +  + V +T  + +GIG A A +A +EGARV I      +L E    + 
Sbjct: 4   TAPKYVPGHGLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELA 63

Query: 83  LATGIE-VATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSL--DEV 135
              G+  V     DV     V      A++  G +DVLV N G  + G+  V  +  DE 
Sbjct: 64  AELGLGRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAG--LGGQTPVVDMTDDEW 121

Query: 136 RLMIDVNIIGSFHMIKAALPLIKKRQNGG----PASIALMSSQAGQ 177
             ++DV + G+F   +AAL  ++ R +GG     AS+    +Q GQ
Sbjct: 122 SRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQ 167

Length = 262

>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 67.2 bits (164), Expect = 7e-14
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TG +SGIG  +A + A+ GA V+I   + +        I    G +    + DV + DA
Sbjct: 12  VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN-KAGGKAIGVAMDVTNEDA 70

Query: 102 VKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           V   +D+     G VD+LV N G+ +   +E  S  + + M  +++ G+F   KAAL  +
Sbjct: 71  VNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHM 130

Query: 158 KKRQNGGPASIALMSSQAGQVG 179
            K   GG   +  M S      
Sbjct: 131 YKDDRGG--VVIYMGSVHSHEA 150

Length = 262

>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional

 Score = 67.1 bits (164), Expect = 8e-14
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSAD 95
            +   ITG S GIGLA+A +    GA V I+AR  + L +A+  + +     EV   +AD
Sbjct: 9   GQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68

Query: 96  VRD-------FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           V D        D V+   D    + +LV N G  +       + DE R + + N+  +F 
Sbjct: 69  VSDDEDRRAILDWVE---DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFE 125

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAG 176
           + + A PL+K+  +    +I  + S +G
Sbjct: 126 LSRYAHPLLKQHASS---AIVNIGSVSG 150

Length = 257

>gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 17/143 (11%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V++TG + GIG A+A    + GA+V    ++    E              AT+  DV D 
Sbjct: 11  VWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQE----------DYPFATFVLDVSDA 60

Query: 100 DAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            AV       L E GP+DVLV   G+   G  +  S ++ +    VN  G+F++ +A +P
Sbjct: 61  AAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMP 120

Query: 156 LIKKRQNGGPASIALMSSQAGQV 178
             +++++G   +I  + S A  V
Sbjct: 121 QFRRQRSG---AIVTVGSNAAHV 140

Length = 252

>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
            +  +   +TGG+SGIG A+A   A +GARV++L RS E + E    +    G       
Sbjct: 12  DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS-EDVAEVAAQL---LGGNAKGLV 67

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D  +V+ A+       G +D+LV + GV +    E  S ++    ID+N+ GSF M
Sbjct: 68  CDVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLM 127

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            +A    +     G    I  ++SQAG V 
Sbjct: 128 AQAVGRHMIAAGGG---KIVNLASQAGVVA 154

Length = 255

>gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           ITG S GIG A+A + A     + +  R  E+L+E    +  AT   V     D+ D +A
Sbjct: 8   ITGASRGIGAAIARELA-PTHTLLLGGRPAERLDELAAELPGATPFPV-----DLTDPEA 61

Query: 102 VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK 158
           +  A+++ G +DVLV N GV   G +   ++DE R  ++VN++    + +  LP ++
Sbjct: 62  IAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALR 118

Length = 227

>gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 10/140 (7%)

Query: 28  PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI 87
           P P R     R   + G SSGIG A A + A  G  V++ AR  EK EE    I+ A G 
Sbjct: 6   PHPDR-----RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIR-ADGG 59

Query: 88  EVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
           E   +  DV D D+VK+ + +A    G ++VLV   G    G+L   S ++    + +++
Sbjct: 60  EAVAFPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHL 119

Query: 144 IGSFHMIKAALPLIKKRQNG 163
           +G+  +  A LP + +R+ G
Sbjct: 120 VGANRLATAVLPGMIERRRG 139

Length = 274

>gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRD 98
             +TG +  IG A+A   A EG RV +    S  + +  K  +  A         AD+ D
Sbjct: 3   ALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEAEAQRLKDELN-ALRNSAVLVQADLSD 61

Query: 99  FDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           F A    V  A    G  DVLV N   F P  L   S D    +  +N+   + +I+A  
Sbjct: 62  FAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLKAPYLLIQAFA 121

Query: 155 PLIKKRQNG 163
             +   +NG
Sbjct: 122 RRLAGSRNG 130

Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234

>gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGG+ GIG  +A + AK+G  V++   + E  +E  + I  A G  VA Y  DV D D 
Sbjct: 5   VTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVA-YKLDVSDKDQ 63

Query: 102 VKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           V +A+D+A    G  DV+V N GV     +   + +E++ + +VN+ G    I+AA    
Sbjct: 64  VFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQF 123

Query: 158 KKRQNGGPASIALMSSQAGQVG 179
           KK+ +GG   I   +S AG  G
Sbjct: 124 KKQGHGG--KIINAASIAGHEG 143

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 12/142 (8%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVAT 91
           + IK + V +TG + GIG A   Q    GA  V   AR  E + +         G  V  
Sbjct: 2   MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD--------LGPRVVP 53

Query: 92  YSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMI 150
              DV D  +V  A + A  V +LV N G+F  G  L     D +R  ++ N  G   M 
Sbjct: 54  LQLDVTDPASVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMA 113

Query: 151 KAALPLIKKRQNGGPASIALMS 172
           +A  P++    NGG A + ++S
Sbjct: 114 RAFAPVLAA--NGGGAIVNVLS 133

Length = 238

>gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
            I ++ +   +TG SSG+G   A   A+ GA+V + +R  E+L+E +  I+ A G     
Sbjct: 4   SINLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIE-AEGGAAHV 62

Query: 92  YSADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
            S DV D+ ++K A+     EAG +D+LV N GV    +L   +  +   + D N  G+F
Sbjct: 63  VSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAF 122

Query: 148 HMIKAALPLIKKRQNGGPAS 167
            + +     +  R  G   +
Sbjct: 123 FVAQEVAKRMIARAKGAGNT 142

Length = 258

>gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 39  HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
            + +TG S GIG ALA +  K G  + V +LARS E L+E K+ ++   G+ V T  AD+
Sbjct: 1   VIILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELR--PGLRVTTVKADL 58

Query: 97  RDFDAVKTALDEAGPVDV----LVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIK 151
            D   V+  L+    +D     L+ N G   P  ++E   LDE++   D+N+     +  
Sbjct: 59  SDAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQKYFDLNLTSPVCLTS 118

Query: 152 AALPLIKKR 160
             L   KKR
Sbjct: 119 TLLRAFKKR 127

Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241

>gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 14/154 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI------LARSGEKLEEAK---QSIQLATG 86
             R V +TG   G+G A A   A+ GA+V +         SG+    A      I+ A G
Sbjct: 4   DGRVVLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKSSSAADKVVDEIKAAGG 63

Query: 87  IEVATYSADVRDFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIG 145
             VA Y   V D +  VKTA+D  G VD+LV N G+         S ++  L++ V++ G
Sbjct: 64  KAVANYD-SVEDGEKIVKTAIDAFGRVDILVNNAGILRDRSFAKMSEEDWDLVMRVHLKG 122

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           SF + +AA P ++K++ G    I   SS AG  G
Sbjct: 123 SFKVTRAAWPYMRKQKFG---RIINTSSAAGLYG 153

Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250

>gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 12/130 (9%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSIL---ARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
           +TGG+SGIGLA+A + A EGA V +        EK+ EA Q    A G++      DV  
Sbjct: 6   VTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVAEAAQGGPRALGVQC-----DVTS 60

Query: 99  FDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
              V++A ++A    G +D++V N G+     +   SL++    +D+N+ G F + + A 
Sbjct: 61  EAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAETSLEDWNRSMDINLTGHFLVSREAF 120

Query: 155 PLIKKRQNGG 164
            ++K +  GG
Sbjct: 121 RIMKSQGIGG 130

This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 8/145 (5%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSADVRD 98
           + ITG SSG+G  +A + A +G  +++ AR  ++LEE K  +     GI+VA  + DV D
Sbjct: 5   ILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64

Query: 99  FDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            D V        DE G +D ++VN G+     L        +   + N + +    +AA+
Sbjct: 65  HDQVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAM 124

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
             I + Q  G   + L+SS +   G
Sbjct: 125 E-IFREQGSG--HLVLISSVSAVRG 146

Length = 248

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 65.3 bits (159), Expect = 8e-13
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 12/148 (8%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R V +TG + GIG A   + A+ G +V +  R+ E+  E   S+    G +    + DV 
Sbjct: 6   RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL----GPDHHALAMDVS 61

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIK 151
           D   ++   ++     G +DVLV N GV  P        +L+E   +  +N+ G++ + +
Sbjct: 62  DEAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAR 121

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            AL L+ ++ +G  A+I  ++S AG V 
Sbjct: 122 EALRLMIEQGHG--AAIVNVASGAGLVA 147

Length = 520

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 28  PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI 87
             P  +    R V ITGG+ GIG A+A + A  G R+ I+ R  E  ++  +    A G 
Sbjct: 260 QAPSPLAESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAE----ALGD 315

Query: 88  EVATYSADVRDFDAVKTALDEA----GPVDVLVVNQG---VFVPGELEVQSLDEVRLMID 140
           E  +  AD+ D  AV++A  +     G +DVLV N G   VF P     QS ++   + D
Sbjct: 316 EHLSVQADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKP--SLEQSAEDFTRVYD 373

Query: 141 VNIIGSFHMIKAALPLIKK 159
           VN+ G+F   +AA  L+ +
Sbjct: 374 VNLSGAFACARAAARLMSQ 392

Length = 520

>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
            +TG S GIG A+A + A +G  V++  A S    +E    I+ A G  +A   ADV D 
Sbjct: 9   IVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIA-VQADVADA 67

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            AV    D A    G +DVLV N GV   G +    L++    I  N+ G+F +++ A  
Sbjct: 68  AAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAAR 127

Length = 245

>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG SSGIG A A   A+EGA+V + AR   +L++    I+ A G E    + D
Sbjct: 5   NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR-AEGGEAVALAGD 63

Query: 96  VRDFD----AVKTALDEAGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMI 150
           VRD       V  A++  G +D+   N G     G +   SL+  R  +  N+  +F   
Sbjct: 64  VRDEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGA 123

Query: 151 KAALPLIKKRQNGGPASIALMSSQAG 176
           K  +P +  R  G   S+   S+  G
Sbjct: 124 KHQIPAMLARGGG---SLIFTSTFVG 146

Length = 254

>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           ITG S+GIG A A   A+EGA V +     E + E    I+   G +   Y  D+ D   
Sbjct: 11  ITGASTGIGQASAIALAQEGAYV-LAVDIAEAVSETVDKIKSNGG-KAKAYHVDISDEQQ 68

Query: 102 VKTALDEA----GPVDVLVVNQGVFVPG----ELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           VK    E     G VDVL  N GV        E  V   D++   + V++ G+F M K  
Sbjct: 69  VKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKI---MAVDMRGTFLMTKML 125

Query: 154 LPLIKKRQNGGPASIALMSSQAGQ 177
           LPL+ +   GG  SI   SS +GQ
Sbjct: 126 LPLMME--QGG--SIINTSSFSGQ 145

Length = 272

>gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+ V +TGG+SGIG A++ + A+EGA   I  RS    E A++   L           
Sbjct: 5   LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRAL--QPRAEFVQV 62

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+ D    + A+++     G +D LV N GV     LE    +     ++ N+I  + M 
Sbjct: 63  DLTDDAQCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLE-AGREAFVASLERNLIHYYVMA 121

Query: 151 KAALPLIKK 159
              LP +K 
Sbjct: 122 HYCLPHLKA 130

Length = 258

>gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional

 Score = 62.7 bits (152), Expect = 3e-12
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGG+ GIG A+    A+EGA+V I   S ++  E   +     G +V    ADV   + 
Sbjct: 11  VTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVED 70

Query: 102 VKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
               ++EA    G VD+LV N G+      +  + ++   +IDVN+   F+   A LP I
Sbjct: 71  ANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYI 130

Query: 158 KKRQNGGPASIALMSSQAGQVG 179
            + + G   SI+ +  QAG  G
Sbjct: 131 TEAEEGRIISISSIIGQAGGFG 152

Length = 247

>gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRD 98
           V ITG SSG+GLA A   A+ G    ++A R   K E+A Q + +      +    D+  
Sbjct: 4   VVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKD-SYSVLHCDLAS 62

Query: 99  FDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDE-VRLMIDVNIIGSFHMIKAA 153
            D+V+  +D       P+D LV N  V++P   E +   +   L + VN +G F +    
Sbjct: 63  LDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHFLLTNLL 122

Query: 154 LPLIKKRQNGGPASIALMSSQAG 176
           L  +++ +N     I ++ S   
Sbjct: 123 LEDLQRSEN-ASPRIVIVGSITH 144

Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311

>gnl|CDD|235608 PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 13/146 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K + V I G S G+G A+A+ A KEGA+V I +R+  KL+  K++  L+    +     
Sbjct: 3   LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKT--LSKYGNIHYVVG 60

Query: 95  DVRDFDAVKTALDEAG----PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV   ++ +  +++A      +D LVV  G +V  E  V+    +  M+  +I    + +
Sbjct: 61  DVSSTESARNVIEKAAKVLNAIDGLVVTVGGYV--EDTVEEFSGLEEMLTNHIKIPLYAV 118

Query: 151 KAALPLIKKRQNGGPASIALMSSQAG 176
            A+L  +K+      +SI L+SS +G
Sbjct: 119 NASLRFLKE-----GSSIVLVSSMSG 139

Length = 238

>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 47/143 (32%), Positives = 64/143 (44%), Gaps = 10/143 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           + V +TG SSGIG A A   A+ GARV   AR+   L+      +LA          DV 
Sbjct: 10  KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALD------RLAGETGCEPLRLDVG 63

Query: 98  DFDAVKTALDEAGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           D  A++ AL  AG  D LV   G+      L++ +    R+M  VN  G+  + +     
Sbjct: 64  DDAAIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVM-AVNARGAALVARHVAR- 121

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
                 G   SI  +SSQA  VG
Sbjct: 122 -AMIAAGRGGSIVNVSSQAALVG 143

Length = 245

>gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 13/140 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG S G+G A+A   A+EGARV +        E A+     A    +A   ADVRD 
Sbjct: 3   VLVTGASRGLGAAIARSFAREGARVVVNYYRST--ESAEAVAAEAGERAIAI-QADVRDR 59

Query: 100 DAVKTALDEA----GPVDVLVVNQGV---FVP---GELEVQSLDEVRLMIDVNIIGSFHM 149
           D V+  ++EA    GPVD +V N  +   F P      +    ++ +  ++  + G+ ++
Sbjct: 60  DQVQAMIEEAKNHFGPVDTIVNNALIDFPFDPDQRKTFDTIDWEDYQQQLEGAVKGALNL 119

Query: 150 IKAALPLIKKRQNGGPASIA 169
           ++A LP  K+R +G   +I 
Sbjct: 120 LQAVLPDFKERGSGRVINIG 139

This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  +++ ITG + GIG  LA   A+ GA + I   + E+ E A   ++   GI+      
Sbjct: 7   LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR-QEGIKAHAAPF 65

Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGV-----FVPGELEVQSLDEVRLMIDVNIIG 145
           +V     V+ A++    + GP+DVL+ N G+     F   E   Q  ++V   I VN   
Sbjct: 66  NVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFT--EFPEQEWNDV---IAVNQTA 120

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAGQ 177
            F + +A    + KRQ G   +I  M S+ G+
Sbjct: 121 VFLVSQAVARYMVKRQAGKIINICSMQSELGR 152

Length = 254

>gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR

 Score = 61.8 bits (150), Expect = 6e-12
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            D+ V +TGGS GIG  +     + GA+V   AR     +  +  +  A          D
Sbjct: 8   ADKVVIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCKFVPCD 67

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMI 150
           V   + +KT +       G +D LV N G   P +  +  S  E R ++++N+I  F   
Sbjct: 68  VTKEEDIKTLISVTVERFGRIDCLVNNAGWHPPHQTTDETSAQEFRDLLNLNLISYFLAS 127

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           K ALP ++K Q     +I  +SS  G +G
Sbjct: 128 KYALPHLRKSQ----GNIINLSSLVGSIG 152

These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261

>gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 15/143 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG + GIG A+A    + GA V  L      L E         G  +     DV D 
Sbjct: 1   VIVTGAAQGIGRAVARHLLQAGATVIALDLPFVLLLE--------YGDPLRLTPLDVADA 52

Query: 100 DAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            AV+      L E GP+D LV   GV  PG  +  S ++      VN+ G F++++A  P
Sbjct: 53  AAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQTFAVNVTGVFNLLQAVAP 112

Query: 156 LIKKRQNGGPASIALMSSQAGQV 178
            +K R+ G   +I  ++S A  V
Sbjct: 113 HMKDRRTG---AIVTVASNAAHV 132

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYS 93
           +  +   +TGG+ G+G A+A   A+ GA  + I  R+ EK  EA+ +   A G +     
Sbjct: 4   LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEK-GEAQAAELEALGAKAVFVQ 62

Query: 94  ADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           AD+ D +     V  A +  G +D LV   G+   G +   S +       VN+   F +
Sbjct: 63  ADLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFL 122

Query: 150 IKAALPLIKKRQNGGP-ASIALMSSQAGQ 177
           ++ A+ L+++R+  G   +I  MS+  GQ
Sbjct: 123 MQEAIKLMRRRKAEGTIVNIGSMSAHGGQ 151

Length = 260

>gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional

 Score = 61.7 bits (150), Expect = 7e-12
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  R   ITGG SGIGLA A + A EGA V +     E  + A   +    G+ V T   
Sbjct: 5   LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---GGLFVPT--- 58

Query: 95  DVRDFDAVK----TALDEAGPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFH 148
           DV D DAV     TA +  G VD+   N G+  P    +    LD  + + DVN+   + 
Sbjct: 59  DVTDEDAVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYL 118

Query: 149 MIKAALPLIKKRQNGG---PAS-IALMSSQAGQV 178
             KAALP + ++  G     AS +A+M S   Q+
Sbjct: 119 CCKAALPHMVRQGKGSIINTASFVAVMGSATSQI 152

Length = 255

>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 15/145 (10%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            +TGG  GIGL +A   A  G  ++I  R  ++   A Q    A G+EV  + ADV D  
Sbjct: 6   LVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLS 65

Query: 101 A----VKTALDEAGPVDVLVVNQGVFVPG-----ELEVQSLDEVRLMIDVNIIGSFHMIK 151
           A    +  A    G +D LV N GV V       +L  +S D V   + +N+ G F + +
Sbjct: 66  AHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRV---LAINLRGPFFLTQ 122

Query: 152 A---ALPLIKKRQNGGPASIALMSS 173
           A    +    + +     SI  +SS
Sbjct: 123 AVAKRMLAQPEPEELPHRSIVFVSS 147

Length = 256

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 61.4 bits (149), Expect = 7e-12
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG  +GIG A A + A+EGARV +    G   +     I             DV D 
Sbjct: 6   AIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQI----AGGALALRVDVTDE 61

Query: 100 DAVK----TALDEAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
             V      A++E G +D+LV N G   +   +    L      + +N+ G+F   + A 
Sbjct: 62  QQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTFLCCRHAA 121

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           P +  R   G  SI  +SS AGQ G
Sbjct: 122 PRMIAR---GGGSIVNLSSIAGQSG 143

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR

 Score = 61.3 bits (149), Expect = 7e-12
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLE-EAKQSIQLATGIEVATYSADVRDFD 100
           +TG  SG G  +A + A+EGARV I   + +  E  A    + A  I+         D +
Sbjct: 10  VTGAGSGFGEGIARRFAQEGARVVIADINADGAERVAADIGEAAIAIQADVTKRA--DVE 67

Query: 101 A-VKTALDEAGPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK 158
           A V+ AL + G +D+LV N G+      +     +E   +  VN+   +   +A +P ++
Sbjct: 68  AMVEAALSKFGRLDILVNNAGITHRNKPMLEVDEEEFDRVFAVNVKSIYLSAQALVPHME 127

Query: 159 KRQNG 163
           ++  G
Sbjct: 128 EQGGG 132

This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248

>gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional

 Score = 61.0 bits (149), Expect = 8e-12
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 16/154 (10%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY--- 92
           KDR + +TG   GIG   A   A+ GA V +L R+ EKLE     I+ A G + A     
Sbjct: 11  KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLD 70

Query: 93  --SADVRDFDAVKTAL-DEAGPVDVLVVNQ---GVFVP-GELEVQSLDEVRLMIDVNIIG 145
             +A  +++  +   + ++ G +D ++ N    G   P  + + +   +V   + VN+  
Sbjct: 71  LLTATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDV---MQVNVNA 127

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +F + +A LPL+ K      AS+   SS  G+ G
Sbjct: 128 TFMLTQALLPLLLKSPA---ASLVFTSSSVGRQG 158

Length = 247

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 5/86 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   ITGG   +G A+A + A+ GA+V+IL R+ EK E     I+ A G  +A   A
Sbjct: 8   LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALA-VKA 66

Query: 95  DVRDFDAVKTA----LDEAGPVDVLV 116
           DV D ++++ A    L++ GP D+L+
Sbjct: 67  DVLDKESLEQARQQILEDFGPCDILI 92

Length = 278

>gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TG + G+G  +A   A  GA V +  R+   LE A  +++ A G      + D+ D +A
Sbjct: 16  VTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR-AAGGAAEALAFDIADEEA 74

Query: 102 VKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           V  A      E G +D+LV N G      L       +R +++ +++    + + A   +
Sbjct: 75  VAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRM 134

Query: 158 KKRQNGGPASIALMSSQAGQV 178
            KRQ  G   I  ++S AGQV
Sbjct: 135 -KRQGYG--RIIAITSIAGQV 152

Length = 256

>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           ITG +SG GLA A   A  G ++ +     + L+ A   ++ A G EV     DV D   
Sbjct: 11  ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR-AQGAEVLGVRTDVSDAAQ 69

Query: 102 V----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           V      AL+  G V +L  N GV   G +   SL +   ++ VN+ G  H ++A  PL
Sbjct: 70  VEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPL 128

Length = 287

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 16/144 (11%)

Query: 35  IKDRHVFITGGSSGIGLA-----LAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV 89
           IKD+ V +TG + GIG A     LAH A K  A V     +   + +         G +V
Sbjct: 1   IKDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKY--------GDKV 52

Query: 90  ATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFH 148
                DV D +++K A  +A  VDV++ N GV  P   LE  +L+ ++  +DVN+ G   
Sbjct: 53  VPLRLDVTDPESIKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLR 112

Query: 149 MIKAALPLIKKRQNGGPASIALMS 172
           + +A  P++K   NGG A + L S
Sbjct: 113 LAQAFAPVLKA--NGGGAIVNLNS 134

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 32/161 (19%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + + +TGGSSGIGLA+  +    GA V         +       +    +       
Sbjct: 7   LQGKIIIVTGGSSGIGLAIVKELLANGANVVNA-----DIHGGDGQHENYQFVPT----- 56

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPG------------ELEVQSLDEVRLM 138
           DV   + V   + E     G +D LV N G+ +P             EL   + D+   M
Sbjct: 57  DVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDK---M 113

Query: 139 IDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            ++N  G F M +A    + K+ +G    I  MSS+AG  G
Sbjct: 114 FNINQKGVFLMSQAVARQMVKQHDG---VIVNMSSEAGLEG 151

Length = 266

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA-TYSA 94
            ++   + GG   +G  L H  A+EG RV++   + EK     Q I    G  +A  + A
Sbjct: 1   MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGA 60

Query: 95  DVRDFDAVKT---ALDEA-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D     +V      +DE  G VD+LV N G+     +    L +    + VN++G F   
Sbjct: 61  DATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCA 120

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +    L+ +    G   I  ++S++G+VG
Sbjct: 121 REFSRLMIRDGIQG--RIIQINSKSGKVG 147

Length = 259

>gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           ITG S GIG A A  AA+ G  V +   R+ +  E   Q+I+   G  +A  +ADV D  
Sbjct: 7   ITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAV-AADVADEA 65

Query: 101 AV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL--MIDVNIIGSFHMIKAAL 154
            V    +    E G +D LV N G+    ++ ++ +D  RL  +   N++GSF   + A+
Sbjct: 66  DVLRLFEAVDRELGRLDALVNNAGILEA-QMRLEQMDAARLTRIFATNVVGSFLCAREAV 124

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
             +  R  G   +I  +SS A ++G
Sbjct: 125 KRMSTRHGGRGGAIVNVSSMAARLG 149

Length = 248

>gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYS 93
           +  +  F+TG  SGIG  +A   A+ GA V++   R+ + L E  + I+ A G      +
Sbjct: 6   LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIE-AAGRRAIQIA 64

Query: 94  ADVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           ADV     ++ A+     E G + + V   G+      E    ++ + ++D+N+ G F  
Sbjct: 65  ADVTSKADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLS 124

Query: 150 IKAALPLIKKRQNGGPASIALMS 172
            +A    + +   G   +IA MS
Sbjct: 125 CQAEARAMLENGGGSIVNIASMS 147

Length = 254

>gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  + D+   +TG   G+G A+A   A+ GA V I AR+  +L+E  + I+ A G     
Sbjct: 5   RFRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR-AAGRRAHV 63

Query: 92  YSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
            +AD+   +A       A++  G +D++V N G  +P  L   S  ++      N+  + 
Sbjct: 64  VAADLAHPEATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAH 123

Query: 148 HMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
            +  AA+PL+ +   GG  S+  +SS  G++
Sbjct: 124 ALTVAAVPLMLEHSGGG--SVINISSTMGRL 152

Length = 263

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 58.3 bits (141), Expect = 8e-11
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TGG++GIG A+A   AK GA V I     E  E    +IQ A G  +        + 
Sbjct: 2   AIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQAGGQAIGLECNVTSEQ 61

Query: 100 D---AVKTALDEAGPVDVLVVNQGVFVPGELEV-QSLDEVRLMIDVNIIGSFHMIKAALP 155
           D    VK  + + G + +LV N G   P   ++  + ++      +N+  +F + +   P
Sbjct: 62  DLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPMTEEDFEWAFKLNLFSAFRLSQLCAP 121

Query: 156 LIKKRQNGGPASIALMSS 173
            ++K   G   +I+ MSS
Sbjct: 122 HMQKAGGGAILNISSMSS 139

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR

 Score = 58.7 bits (142), Expect = 8e-11
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R P+ ++   +T  + GIGLA+A + A++GA V + +R  + ++ A  ++Q   G+ V  
Sbjct: 5   RDPLANKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQ-GEGLSVTG 63

Query: 92  YSADVRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEV-RLMIDVNIIGS 146
               V   +     V TA++  G VD+LV N  V       + S +EV   ++DVN+  +
Sbjct: 64  TVCHVGKAEDRERLVATAVNLHGGVDILVSNAAVNPFFGNILDSTEEVWDKILDVNVKAT 123

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAG 176
             M KA +P ++KR   G  S+ ++SS A 
Sbjct: 124 ALMTKAVVPEMEKR---GGGSVVIVSSVAA 150

This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG ++G G  +  +  ++G +V    R  E+L+E K  +    G  +     DVR+ 
Sbjct: 3   VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----GDNLYIAQLDVRNR 58

Query: 100 DAVKTALDEAGP----VDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            A++  L         +DVLV N G+ +  E     S+++   MID N  G  +M +A L
Sbjct: 59  AAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118

Query: 155 PLIKKRQNG 163
           P + +R +G
Sbjct: 119 PGMVERNHG 127

Length = 248

>gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 10/152 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           + DR + +TG S GIG   A   A+ GA V +L R+ EKL +    I    G +   +  
Sbjct: 2   LNDRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEEGGRQPQWFIL 61

Query: 95  DVRDFDA------VKTALDEAGPVDVLVVNQG-VFVPGELEVQSLDEVRLMIDVNIIGSF 147
           D+    +       +        +D ++ N G +     L  Q+    + +  VN+  +F
Sbjct: 62  DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVNATF 121

Query: 148 HMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            + +A LPL+ K   G   S+   SS  G+ G
Sbjct: 122 MLTQALLPLLLKSDAG---SLVFTSSSVGRQG 150

Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236

>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 14/152 (9%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY-S 93
           +  +   ITGG+SGIG A A   AK GARV I     +  ++A Q++    G    ++  
Sbjct: 2   LDGKVAIITGGASGIGEATARLFAKHGARVVI----ADIDDDAGQAVAAELGDPDISFVH 57

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVF--VPGELEVQSLDEVRLMIDVNIIGSF 147
            DV     V+ A+D A    G +D++  N GV       +   SL+E   ++DVN+ G+F
Sbjct: 58  CDVTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAF 117

Query: 148 HMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              K A  ++   + G   SI  ++S AG VG
Sbjct: 118 LGTKHAARVMIPAKKG---SIVSVASVAGVVG 146

Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSAD 95
           DR   +TGG SGIG  +A      GA V I+ R+ +KL  A + I  L     V    AD
Sbjct: 7   DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPAD 66

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEV-----RLMIDVNIIGS 146
           V D D V  A+D A    G +  +V   G    G   +  + ++     R  +D+N+ G+
Sbjct: 67  VTDEDQVARAVDAATAWHGRLHGVVHCAG----GSETIGPITQIDSDAWRRTVDLNVNGT 122

Query: 147 FHMIK-AALPLIKKRQNGGPASIALMSSQA 175
            +++K AA  L++    GG  S   +SS A
Sbjct: 123 MYVLKHAARELVR----GGGGSFVGISSIA 148

Length = 276

>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K++   ITGG+  +G A+A   A+ GA+V+ L R+ EK ++  + I  A G      +A
Sbjct: 3   LKNKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVAKEIT-ALGGRAIALAA 61

Query: 95  DVRDFDAVKTALDE----AGPVDVLVVNQG 120
           DV D  +++ A +E     G VD+L+   G
Sbjct: 62  DVLDRASLERAREEIVAQFGTVDILINGAG 91

D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271

>gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 11/148 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGI------EVATY 92
           V ITG S GIG A A  AA  G  V I  AR     EE   +++ A G       +VA  
Sbjct: 5   VLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANE 64

Query: 93  SADVRDFDAVKTALDEAGPVDVLVVNQGVFVPG-ELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +  +  FDAV++A    G +D LV N G+  P   L       +R M D N++G++   +
Sbjct: 65  ADVIAMFDAVQSAF---GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAR 121

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A   +   + G   +I  +SS A ++G
Sbjct: 122 EAARRLSTDRGGRGGAIVNVSSIASRLG 149

Length = 248

>gnl|CDD|180838 PRK07102, PRK07102, short chain dehydrogenase; Provisional

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 14/146 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + I G +S I  A A + A  GAR+ + AR  E+LE     ++    + V+T+  D+ D 
Sbjct: 4   ILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63

Query: 100 DAVKTALDEAGPV-DVLVVNQGVFVPGELEVQ-----SLDEVRLMIDVNIIGSFHMIKAA 153
            +    LD    + D++++       G L  Q                N  G   ++   
Sbjct: 64  ASHAAFLDSLPALPDIVLI-----AVGTLGDQAACEADPALALREFRTNFEGPIALLTLL 118

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
               + R +G   +I  +SS AG  G
Sbjct: 119 ANRFEARGSG---TIVGISSVAGDRG 141

Length = 243

>gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 15/148 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG  SG G  LA +    G  V  LA    K     + ++      + T   DV   
Sbjct: 3   VLITGCDSGFGNLLAKKLDSLGFTV--LAGCLTKNGPGAKELRRVCSDRLRTLQLDVTKP 60

Query: 100 DAVKTA-------LDEAGPVDVLVVNQGVFVPGEL-EVQSLDEVRLMIDVNIIGSFHMIK 151
           + +K A       + E G +  LV N G+   G   E+  +D+ R  ++VN+ G+  + K
Sbjct: 61  EQIKRAAQWVKEHVGEKG-LWGLVNNAGILGFGGDEELLPMDDYRKCMEVNLFGTVEVTK 119

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A LPL+++ +      +  +SS  G+V 
Sbjct: 120 AFLPLLRRAK----GRVVNVSSMGGRVP 143

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281

>gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 14/151 (9%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY-- 92
           +  +   ITG + GIG A A    +EGARV+I   +   LE A+ +      I  A    
Sbjct: 1   LDGKTALITGSARGIGRAFAQAYVREGARVAI---ADINLEAARATAAE---IGPAACAI 54

Query: 93  SADVRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           S DV D       V   +D  G +D+LV N  +F    +   + +    +  +N+ G+  
Sbjct: 55  SLDVTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSGTLF 114

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           M++A    +  +  GG   I  M+SQAG+ G
Sbjct: 115 MMQAVARAMIAQGRGG--KIINMASQAGRRG 143

This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254

>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 10/151 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +D+ + ITG +  IG A        GAR+ +   +   LE+ K+ +       V     D
Sbjct: 1   EDKIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELTNLYKNRVIALELD 60

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE---LEVQSLDEVRLMIDVNIIGSFH 148
           +   +++K  ++      G +D+L+ N            E    ++   +++VN+ G+F 
Sbjct: 61  ITSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAFL 120

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             +A + L KK+  G   SI  ++S  G + 
Sbjct: 121 CSQAFIKLFKKQGKG---SIINIASIYGVIA 148

This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 13/153 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  + V +TGGS GIG  +A    + GARV I AR  E   +A +   L+   E     A
Sbjct: 4   VAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEE--LSAYGECIAIPA 61

Query: 95  DVRDFDAVKTALDEAGPV----DVLVVNQGVFVPGELE---VQSLDEVRLMIDVNIIGSF 147
           D+   + ++  +          DVLV N G      LE       D+V   +D+N+   F
Sbjct: 62  DLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKV---MDINVKSVF 118

Query: 148 HMIKAALPLIKKRQNGG-PASIALMSSQAGQVG 179
            + +A LPL++       PA +  + S AG V 
Sbjct: 119 FLTQALLPLLRAAATAENPARVINIGSIAGIVV 151

Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R  ++TGG  GIG ++  +  K+G +V                 Q A G +      +V 
Sbjct: 4   RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVG 63

Query: 98  DFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D+D+ K A D    E G +DVLV N G+         + ++   +ID N+   F++ K  
Sbjct: 64  DWDSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQV 123

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
           +  + +R  G   +I+ ++ Q GQ G
Sbjct: 124 IDGMVERGWGRIINISSVNGQKGQFG 149

Length = 246

>gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
               +   +TG S GIG A+A + A+EG  +++  ARS +  EE  + I+ A G +    
Sbjct: 1   VFSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE-ALGRKALAV 59

Query: 93  SADVRDFDAVK---TALDEA-GPVDVLVVN--QGVFVPG-ELEVQSLDEVRLMIDVNIIG 145
            A+V D + +K     +DE  G +DV V N   GV  P  ELE    D     +++N   
Sbjct: 60  KANVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWD---WTMNINAKA 116

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSS 173
                + A  L++K   G   S++ + S
Sbjct: 117 LLFCAQEAAKLMEKVGGGKIISLSSLGS 144

Length = 250

>gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 17/150 (11%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            D+   +TG + GIG A A   A+EGA V +   + E  E   + I +A G        D
Sbjct: 5   DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI-VADGGTAIAVQVD 63

Query: 96  VRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEV------RLMIDVNIIG 145
           V D D+ K      +   G +D LV N  ++  G +++  L  V      + M  VN+ G
Sbjct: 64  VSDPDSAKAMADATVSAFGGIDYLVNNAAIY--GGMKLDLLITVPWDYYKKFM-SVNLDG 120

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQA 175
           +    +A    + KR  G   +I   SS A
Sbjct: 121 ALVCTRAVYKHMAKRGGG---AIVNQSSTA 147

Length = 250

>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 20/147 (13%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V ITG +SGIGLA A     +GA+V  +          KQ     +G        D
Sbjct: 4   MTKTVLITGAASGIGLAQARAFLAQGAQVYGV---------DKQDKPDLSG-NFHFLQLD 53

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGV---FVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           +   D ++   D    VD+L    G+   + P  L   SL+E + + D N+  +F + +A
Sbjct: 54  LS--DDLEPLFDWVPSVDILCNTAGILDDYKP--LLDTSLEEWQHIFDTNLTSTFLLTRA 109

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            LP + +R++G    I  M S A  V 
Sbjct: 110 YLPQMLERKSG---IIINMCSIASFVA 133

Length = 235

>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL--ATGIEV 89
           R P   + V +TG  SGIG   A   A+EGA V     S      A+++ +L  A G   
Sbjct: 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVA---SDIDEAAAERTAELIRAAGAVA 366

Query: 90  ATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIG 145
             Y  DV D DA++        E G  D++V N G+ + G     S ++   ++DVN+ G
Sbjct: 367 HAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWG 426

Query: 146 SFH 148
             H
Sbjct: 427 VIH 429

Length = 582

>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  +   ITG S+GIG  +A    + GA+V+I AR  + LE+    I   +G +V     
Sbjct: 7   LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIG-TSGGKVVPVCC 65

Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV     V + LD    E G +D+ V N G+     +    L+E + + + N+ G F   
Sbjct: 66  DVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTA 125

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQV 178
           +AA   + K+  GG   I   +S +G +
Sbjct: 126 QAAAKAMVKQGQGG--VIINTASMSGHI 151

Length = 253

>gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG S GIG A+A++ A +G  + +   SG    E+  S   A G        DV D 
Sbjct: 1   VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADR 60

Query: 100 DAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK-AAL 154
            A +T L+    E G    +V+N G+         S ++  ++I  N+ G +++I    +
Sbjct: 61  VACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTM 120

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           P+I+ RQ G   ++A +S   G  G
Sbjct: 121 PMIRARQGGRIITLASVSGVMGNRG 145

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             I G + GIG ALA   A  G R+ +  R    L        LA  +      ADV   
Sbjct: 1   ALILGATGGIGRALARALAGRGWRLLLSGRDAGALA------GLAAEVGALARPADVAAE 54

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
             V     E GP+D+LV   G  +   L        R ++D N+ G+  ++K AL L+
Sbjct: 55  LEVWALAQELGPLDLLVYAAGAILGKPLARTKPAAWRRILDANLTGAALVLKHALALL 112

Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206

>gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGG++GIG ++     K GA+V I+    +  +    S  L     V  +  DV   D 
Sbjct: 23  VTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDS--LGGEPNVCFFHCDVTVEDD 80

Query: 102 VKTALDEA----GPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           V  A+D      G +D++V N G+  P   ++    L E   + DVN+ G F  +K A  
Sbjct: 81  VSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAAR 140

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
           ++   + G   S+  ++S  G +G
Sbjct: 141 IMIPLKKGSIVSLCSVASAIGGLG 164

Length = 280

>gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 16/143 (11%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVAT 91
           + I ++ V +TGGS G+G A+A   A+EGARV +   +S +  E     +    G     
Sbjct: 1   MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL----GDRAIA 56

Query: 92  YSADVRDFDAVKTALDEA-----GPVDVLVVNQGV---FVPG---ELEVQSLDEVRLMID 140
             ADV D + V+     A      P+  +V N      F      + +  + ++ +  ++
Sbjct: 57  LQADVTDREQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLE 116

Query: 141 VNIIGSFHMIKAALPLIKKRQNG 163
            ++ G+ + I+AALP ++++  G
Sbjct: 117 GSVKGALNTIQAALPGMREQGFG 139

Length = 253

>gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 15/145 (10%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R V +TGG+ GIG  +A      GA V +  R          + +   G     ++AD
Sbjct: 5   TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR---------APETVDGRPAEFHAAD 55

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           VRD D V   +D      G +DVLV N G          S      ++++N++    + +
Sbjct: 56  VRDPDQVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQ 115

Query: 152 AALPLIKKRQNGGPASIALMSSQAG 176
           AA  +++++  GG  SI  + S +G
Sbjct: 116 AANAVMQQQPGGG--SIVNIGSVSG 138

Length = 252

>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
            + D+ + +TG S G+G  +A   A  GA V ++AR  +KLE+   +I  A   E     
Sbjct: 3   TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIR 62

Query: 94  ADV-----RDFDAVKTALDEA--GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIG 145
            D+     ++F+     + EA  G +D +V   G F     L+ Q++ E      +N + 
Sbjct: 63  FDLMSAEEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVA 122

Query: 146 SFHMIKAALPLIKK 159
              + +A  PL+K+
Sbjct: 123 PMGLTRALFPLLKQ 136

Length = 239

>gnl|CDD|219957 pfam08659, KR, KR domain

 Score = 52.5 bits (127), Expect = 5e-09
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQL--ATGIEVATYSADV 96
             +TGG  G+GL LA   A+ GAR + +L+RSG    EA+  +    A G EV   + DV
Sbjct: 3   YLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACDV 62

Query: 97  RDFDAVKTALDEA 109
            D DAV+  L E 
Sbjct: 63  SDRDAVRALLAEI 75

This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181

>gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 21/159 (13%)

Query: 33  IPIKDRHVF-ITGGSSGIGLALA-HQAAKEGARVSILARSGEKLEEAKQSIQL----ATG 86
            P+K   V+ +TGG+ GIG ALA   A + GAR+ +L RS    EE  ++  L    A G
Sbjct: 200 APLKPGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALG 259

Query: 87  IEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
             V   SADV D  AV+  L++     G +D ++   GV     L  ++ ++   ++   
Sbjct: 260 ARVLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAPK 319

Query: 143 IIGSFHMIKA--ALPLIKKRQNGGPASIALMSSQAGQVG 179
           + G  ++ +A    PL             L SS +   G
Sbjct: 320 VDGLLNLAQALADEPL---------DFFVLFSSVSAFFG 349

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436

>gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 7/140 (5%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGG++G+G   A   AK GA + I+   G   +E ++ I+   G +V     D+   ++
Sbjct: 20  VTGGNTGLGQGYAVALAKAGADI-IITTHGTNWDETRRLIEKE-GRKVTFVQVDLTKPES 77

Query: 102 ----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
               VK AL+E G +D+LV N G      L     ++   ++D+N+   +H+ +A   ++
Sbjct: 78  AEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVM 137

Query: 158 KKRQNGGPASIALM-SSQAG 176
            K+ +G   +IA M S Q G
Sbjct: 138 AKQGSGKIINIASMLSFQGG 157

Length = 258

>gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSA 94
             +   ITGG+  IG A+A      G RV+I    S  + +     +        A   A
Sbjct: 5   SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQA 64

Query: 95  DVRDFDA----VKTALDEAGPVDVLVVNQGVFVP---GELEVQSLDEVRLMIDVNIIGSF 147
           D+ D DA    V   +   G +D LV N   F P   G +     D+   +   N+   F
Sbjct: 65  DLLDPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDD---LFASNLKAPF 121

Query: 148 HMIKAALPLIKKRQ 161
            + +AA P ++K++
Sbjct: 122 FLSQAAAPQLRKQR 135

Length = 249

>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 9/136 (6%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
             + + V +TG + GIG  +A + A EGARV ++ RS    E   +   LA G     ++
Sbjct: 1   RFEGKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRSELVHEVLAE--ILAAGDAAHVHT 58

Query: 94  ADVRDFD----AVKTALDEAGPVDVLVVNQG--VFVPGELEVQSLDEVRLMIDVNIIGSF 147
           AD+  +      V+ A++  G VDVL+ N G  ++     E    +++   I  ++  + 
Sbjct: 59  ADLETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAK-PYEHYEEEQIEAEIRRSLFPTL 117

Query: 148 HMIKAALPLIKKRQNG 163
              +A LP + +RQ G
Sbjct: 118 WCCRAVLPHMLERQQG 133

DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG-----IEVATY 92
           R   ITG +SGIG A A   AK G  V ++ R+  + EEA++ I+  +G     + +   
Sbjct: 2   RSFLITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDM 61

Query: 93  SADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           S   + ++ V+   +E   + VL+ N G  V  + E+   D +      N +G++ +   
Sbjct: 62  SDPKQVWEFVEEFKEEGKKLHVLINNAGCMV-NKRELTE-DGLEKNFATNTLGTYILTTH 119

Query: 153 ALPLIKKRQN 162
            +P+++K ++
Sbjct: 120 LIPVLEKEED 129

Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255

>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V +TG + GIG  +A +AA EGARV ++ RS E + E    ++ A G E    +AD
Sbjct: 7   AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS-ELVHEVAAELR-AAGGEALALTAD 64

Query: 96  VRDFD----AVKTALDEAGPVDVLVVNQG 120
           +  +     A+  A++  G +DVL+ N G
Sbjct: 65  LETYAGAQAAMAAAVEAFGRIDVLINNVG 93

Length = 260

>gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 9/128 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R V +TG + GIGLAL+ + A  G +V  +ARS         +I    G   A   AD
Sbjct: 2   SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS---------AIDDFPGELFACDLAD 52

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           +    A    ++E  PVD +V N G+ +P  L    L  ++ + D+N+  +  + +A L 
Sbjct: 53  IEQTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLE 112

Query: 156 LIKKRQNG 163
            +K R+ G
Sbjct: 113 GMKLREQG 120

Length = 234

>gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 28  PKPVRIPIKD---RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QL 83
            KP+ I + D   +   +TG S G+GL LA + A  GA V +  R+  K E A  +I   
Sbjct: 2   RKPLDITVPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA 61

Query: 84  ATGIEVATYSADVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMI 139
               +++  + D+    +V    +    E  P+ +L+ N GV  P E    + D   L  
Sbjct: 62  VPDAKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPE-RQTTADGFELQF 120

Query: 140 DVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA 175
             N +G F +    LPL++     G A +   SS A
Sbjct: 121 GTNHLGHFALTAHLLPLLR----AGRARVTSQSSIA 152

Length = 313

>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF-- 99
           +T   SGIG A A   A++G  + I   S E+  +       + G+       D+ D   
Sbjct: 7   VTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPE 66

Query: 100 --DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF--------HM 149
              A+   +   G +DVLV N G            DE R +  V++ G+F        HM
Sbjct: 67  GAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHM 126

Query: 150 IKA 152
           +K 
Sbjct: 127 VKQ 129

Length = 256

>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TG S GIG A+A + A  G  ++I     +       +  LA G     + AD+ +   
Sbjct: 6   VTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADIGELSD 65

Query: 102 VKTALDEA----GPVDVLVVNQGVFVPG-----ELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            +  LD+A    G +D LV N G+ V       +L   S D +   I +N+ G F + +A
Sbjct: 66  HEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRL---IAINLRGPFFLTQA 122

Query: 153 A 153
            
Sbjct: 123 V 123

This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255

>gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGG++GIG A A   A+EGA+V +  R     EE    I+ A G E    + DV     
Sbjct: 12  VTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAE 70

Query: 102 VKTALDEA----GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           VK  +++     G +D    N G+ +  G L   S  E   ++ VN+ G +  +K  +PL
Sbjct: 71  VKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPL 130

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           +   Q GG  +I   +S AG   
Sbjct: 131 MLA-QGGG--AIVNTASVAGLGA 150

Length = 253

>gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQL--ATGIEVATYSADV 96
             ITGG  G+G ALA   A+ GAR + +L+RSG     A   +    A G  V   + DV
Sbjct: 3   YLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVACDV 62

Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVR 136
            D DA+   L       GP+  ++   GV   G L   + +   
Sbjct: 63  ADRDALAAVLAAIPAVEGPLTGVIHAAGVLDDGVLASLTPERFA 106

It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180

>gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 32/136 (23%), Positives = 69/136 (50%), Gaps = 3/136 (2%)

Query: 31  VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA 90
           ++I +  +  F T  S GIG  +A   A+ GA V +L+R+ E L++A++ I+  + ++V+
Sbjct: 2   LKIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVS 61

Query: 91  TYSADV---RDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
              AD+    D +     L   G  D+   + G   PG     S+++    + + +  + 
Sbjct: 62  YIVADLTKREDLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAV 121

Query: 148 HMIKAALPLIKKRQNG 163
           ++ +A +P ++++  G
Sbjct: 122 YLTRALVPAMERKGFG 137

Length = 263

>gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 28/155 (18%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE-----VATYSA 94
             +TGGS GIG A+A + A+ GA V I  R          + ++A  IE          A
Sbjct: 1   ALVTGGSRGIGKAIALRLAERGADVVINYRK-----SKDAAAEVAAEIEELGGKAVVVRA 55

Query: 95  DVRD-------FDAVKTALDEAGPVDVLVVN--QGVFVP-GELEVQSLDEVRLMIDVNII 144
           DV         F AVK   +  G +DVLV N   G F P  EL           ++ N+ 
Sbjct: 56  DVSQPQDVEEMFAAVK---ERFGRLDVLVSNAAAGAFRPLSELT---PAHWDAKMNTNLK 109

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              H  + A  L+  R+ GG   +A+ S  + +  
Sbjct: 110 ALVHCAQQAAKLM--RERGGGRIVAISSLGSIRAL 142

This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATY 92
           +KDR   +TGG SGIG A A   A+EGA V+I  L    E  ++ K+ I+   G +    
Sbjct: 47  LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC-GRKAVLL 105

Query: 93  SADVRD----FDAVKTALDEAGPVDV--LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
             D+ D       V  A    G +D+  LV  + V +P   ++ S ++ +    +N+   
Sbjct: 106 PGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTS-EQFQKTFAINVFAL 164

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQ 177
           F + + A+PL+ K    G + I   S QA Q
Sbjct: 165 FWLTQEAIPLLPK----GASIITTSSIQAYQ 191

Length = 294

>gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R   +TG + GIG ALA +    G RV  L      L     +  L         + D
Sbjct: 1   TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAF--ADALGDA-RFVPVACD 57

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D  ++  AL  A    GPVDVLV N G      L   +    R    +N+  ++  ++
Sbjct: 58  LTDAASLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVE 117

Query: 152 AALPLIKKRQNGGPASIA 169
           A L  + KR  G   +I 
Sbjct: 118 AVLEGMLKRSRGAVVNIG 135

Length = 257

>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG--IEVATYSADVRD 98
            +TG S GIG A+A   A++GA V + +R  +  +    +I  A G    +A +  ++  
Sbjct: 12  LVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQ 71

Query: 99  FDAVKTALDEA-GPVDVLVVNQGV---FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            DA+   + E  G +D+LV N      F  G +    L   +  +DVNI G F M   A 
Sbjct: 72  IDALFAHIRERHGRLDILVNNAAANPYF--GHILDTDLGAFQKTVDVNIRGYFFMSVEAG 129

Query: 155 PLIKKRQNGG 164
            L+K+ Q GG
Sbjct: 130 KLMKE-QGGG 138

Length = 252

>gnl|CDD|187583 cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 6/142 (4%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           + GG   +G  L H  A+ G  V++   + E  E+    I    G +   + AD  +  +
Sbjct: 7   VIGGGQTLGEFLCHGLAEAGYDVAVADINSENAEKVADEINAEYGEKAYGFGADATNEQS 66

Query: 102 V----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           V    K   +    VD+LV + G+    ++    L +    + VN++G F   +    L+
Sbjct: 67  VIALSKGVDEIFKRVDLLVYSAGIAKSAKITDFELGDFDRSLQVNLVGYFLCAREFSKLM 126

Query: 158 KKRQNGGPASIALMSSQAGQVG 179
            +    G   I  ++S++G+VG
Sbjct: 127 IRDGIQG--RIIQINSKSGKVG 146

Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG-IEVATYSADV 96
           + V ITG ++GIG   A + A+ GARV +  R   K EEA   I+  T   EV     D+
Sbjct: 2   KTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLDL 61

Query: 97  RDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
               +++      L E   +DVL+ N GV      + +  D   +   VN +G F +   
Sbjct: 62  ASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTE--DGFEMQFGVNHLGHFLLTNL 119

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            L L+KK     P+ I  +SS A + G
Sbjct: 120 LLDLLKK---SAPSRIVNVSSLAHKAG 143

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 39  HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
            + +TGG+  IG  L  +    G  V  L R  + L+             V     D+ D
Sbjct: 2   RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLS--------GVEFVVLDLTD 53

Query: 99  FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK 158
            D V             V++            S  +    +DVN+ G+ ++++AA     
Sbjct: 54  RDLVDELAKGVPDA---VIHLAAQSSVPDSNAS--DPAEFLDVNVDGTLNLLEAARAAGV 108

Query: 159 KR 160
           KR
Sbjct: 109 KR 110

Length = 314

>gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +T  S GIG  +A +  K+GARV I +R+ E LE+A +  +L    EV    AD+ D 
Sbjct: 3   VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALK--ELKEYGEVYAVKADLSDK 60

Query: 100 D----AVKTALDEAGPVDVLVVNQG 120
           D     VK A +  G +D LV N G
Sbjct: 61  DDLKNLVKEAWELLGGIDALVWNAG 85

Length = 259

>gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 41  FITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
            +TG S GIG A+A + A +GA V+I   R+ +  +E  + I+ + G +     AD+   
Sbjct: 10  LVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIE-SNGGKAFLIEADLNSI 68

Query: 100 DAVKTALDE----------AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           D VK  +++             +D+LV N G+   G +E  + +    ++ VNI   F +
Sbjct: 69  DGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFL 128

Query: 150 IKAALPLIK 158
           I+  LPL++
Sbjct: 129 IQQTLPLLR 137

Length = 254

>gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TGG  GIG  +     + G +V       +  EE       A G  +     DV 
Sbjct: 2   KVAIVTGGGHGIGKQICLDFLEAGDKVVFA----DIDEERGADFAEAEGPNLFFVHGDVA 57

Query: 98  DFDAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D   VK      L++ G +DVLV N      G L    L+E   ++ VN+ G + + +  
Sbjct: 58  DETLVKFVVYAMLEKLGRIDVLVNNAARGSKGILSSLLLEEWDRILSVNLTGPYELSRYC 117

Query: 154 LPLIKKRQNGGPASIALMSSQAGQ 177
              + K        I + S++A Q
Sbjct: 118 RDELIK---NKGRIINIASTRAFQ 138

This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242

>gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 9/135 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG-----IEVATYSADV 96
           +TG + GIG   A Q A++G  + ++AR+ +KL++   SIQ           V  +S D+
Sbjct: 58  VTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDI 117

Query: 97  RD-FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDE--VRLMIDVNIIGSFHMIKAA 153
            +    +K  + E   V VL+ N GV  P       +DE  ++ +I VN+ G+  + +A 
Sbjct: 118 DEGVKRIKETI-EGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAV 176

Query: 154 LPLIKKRQNGGPASI 168
           LP + KR+ G   +I
Sbjct: 177 LPGMLKRKKGAIINI 191

Length = 320

>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 12/128 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS---ADV 96
           V ITG SSG+GL  A   AK G  V +  R+ +K E A Q +    GI   +Y+    D+
Sbjct: 9   VIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL----GIPPDSYTIIHIDL 64

Query: 97  RDFDAVKTALDEAG----PVDVLVVNQGVFVPGELE-VQSLDEVRLMIDVNIIGSFHMIK 151
            D D+V+  +D+      P+D LV N  V++P   E ++S     L +  N +G F +  
Sbjct: 65  GDLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCN 124

Query: 152 AALPLIKK 159
             L  +KK
Sbjct: 125 LLLEDLKK 132

Length = 322

>gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQL-ATGIEVATYSA 94
           D    ITGG  G+GL +A   A  GAR + +L+R G     A ++  L A G  V+    
Sbjct: 150 DGTYLITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALLRAGGARVSVVRC 209

Query: 95  DVRDFDAVKTALDE---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           DV D  A+   L E    GP+  ++   GV     L   +      ++   + G+ ++
Sbjct: 210 DVTDPAALAALLAELAAGGPLAGVIHAAGVLRDALLAELTPAAFAAVLAAKVAGALNL 267

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375

>gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 23/138 (16%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + + G +  IGLA+A   +  G  V    RS                     Y  D+ D 
Sbjct: 1   IIVIGATGTIGLAVAQLLSAHGHEVITAGRSSG------------------DYQVDITDE 42

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK 159
            ++K   ++ G  D +V   G      L   +  + +  ++  ++G  ++++  LP +  
Sbjct: 43  ASIKALFEKVGHFDAIVSTAGDAEFAPLAELTDADFQRGLNSKLLGQINLVRHGLPYL-- 100

Query: 160 RQNGGPASIALMSSQAGQ 177
              G   SI L S    Q
Sbjct: 101 NDGG---SITLTSGILAQ 115

Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198

>gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
            +   ITG  +GIG  +A   A  GA V +   + +        IQ   G   A    D+
Sbjct: 11  GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFAC-RCDI 69

Query: 97  RD----FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
                       AL + G VD+LV N G   P   ++  + + R   ++N+   FH+ + 
Sbjct: 70  TSEQELSALADFALSKLGKVDILVNNAGGGGPKPFDM-PMADFRRAYELNVFSFFHLSQL 128

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQ 177
             P ++K  NGG   I  ++S A +
Sbjct: 129 VAPEMEK--NGG-GVILTITSMAAE 150

Length = 255

>gnl|CDD|236099 PRK07791, PRK07791, short chain dehydrogenase; Provisional

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSI------LARSGEKLEEAKQSIQ--LATGIEV 89
           R V +TG   GIG A A   A EGARV +      L  S      A+  +   +A G E 
Sbjct: 7   RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEA 66

Query: 90  ATYSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIG 145
                D+ D+D     V  A++  G +DVLV N G+     +   S +E   +I V++ G
Sbjct: 67  VANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKG 126

Query: 146 SFHMIKAA 153
            F  ++ A
Sbjct: 127 HFATLRHA 134

Length = 286

>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 21/159 (13%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R   +TG S GIG  +A     +GA V +     EKLE    ++    G  V  + A++ 
Sbjct: 7   RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLE----ALAAELGERVKIFPANLS 62

Query: 98  DFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D D VK     A  +   VD+LV N G+   G     S ++   +++VN+  +F + +  
Sbjct: 63  DRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTREL 122

Query: 154 L-PLIKKRQN------------GGPASIALMSSQAGQVG 179
             P++++R              G P      +S+AG +G
Sbjct: 123 THPMMRRRYGRIINITSVVGVTGNPGQANYCASKAGMIG 161

Length = 245

>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 9/141 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TG ++G+G  +A   A+ GA +    RS  +  E +Q ++ A G    + +AD+ D +A
Sbjct: 10  VTGANTGLGQGIAVGLAEAGADIVGAGRS--EPSETQQQVE-ALGRRFLSLTADLSDIEA 66

Query: 102 VKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA-ALPL 156
           +K  +D A    G +D+LV N G+    + E  S  +   +++VN+   F + +A A   
Sbjct: 67  IKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHF 126

Query: 157 IKKRQNGGPASIA-LMSSQAG 176
           +K+ + G   +IA ++S Q G
Sbjct: 127 LKQGRGGKIINIASMLSFQGG 147

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248

>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSADV 96
           R   +TG ++G+G   A   A +GA V +  R+ +K + A   I     G +V     D+
Sbjct: 17  RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDL 76

Query: 97  RDFDAVKTALDE---AGP-VDVLVVNQGVFVP 124
               +V+ A D    A P +D+L+ N GV   
Sbjct: 77  TSLASVRAAADALRAAYPRIDLLINNAGVMYT 108

Length = 306

>gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATG------IEVATYSA 94
           ITG SSG+GLA A   A+ G    ++A R   K E A +S  +         +++A+  +
Sbjct: 2   ITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDS 61

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSFHMIKAA 153
            VR F  V        P+DVLV N  V++P   E   + D   L +  N +G F + +  
Sbjct: 62  -VRQF--VDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLL 118

Query: 154 LPLIKKRQNGGPASIALMS------SQAGQV 178
           L  +KK        I + S      + AG V
Sbjct: 119 LDDLKKSDYPSKRLIIVGSITGNTNTLAGNV 149

Length = 308

>gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 13/142 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSA---D 95
           V ITG SSG+GL  A   A  G    I+A R   K E+A +S+    G+   +Y+    D
Sbjct: 6   VIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSL----GMPKDSYTIMHLD 61

Query: 96  VRDFDAVK---TALDEAG-PVDVLVVNQGVFVPGELE-VQSLDEVRLMIDVNIIGSFHMI 150
           +   D+V+       E+G P+D LV N  V+ P   E   + D   L +  N +G F + 
Sbjct: 62  LGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLC 121

Query: 151 KAALPLIKKRQNGGPASIALMS 172
              L  +K   N     I + S
Sbjct: 122 NLLLDDLKNSPNKDKRLIIVGS 143

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314

>gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 8/128 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL--ATGIEVATYSAD 95
           R   ITG  SGIG A A   A+EGA +++     E+ ++A + +QL  A G +      D
Sbjct: 56  RKALITGADSGIGRATAIAFAREGADIALNYLPEEE-QDAAEVVQLIQAEGRKAVALPGD 114

Query: 96  VRD----FDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMI 150
           ++D       V+ A+ E G +D+LV   G     + +   + ++       N+   F + 
Sbjct: 115 LKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLC 174

Query: 151 KAALPLIK 158
           KAA+P + 
Sbjct: 175 KAAIPHLP 182

Length = 300

>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGG SG+GL      A+ GA V + AR  +   EA   I    G+EV     D+ D ++
Sbjct: 31  VTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---GVEVVML--DLADLES 85

Query: 102 VKTA----LDEAGPVDVLVVNQGV 121
           V+      LD    +D+L+ N GV
Sbjct: 86  VRAFAERFLDSGRRIDILINNAGV 109

Length = 315

>gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 7/144 (4%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           +TGGS GIG A A   A+EG  V++   ++    +E    I  A G       AD+ D +
Sbjct: 6   VTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVL-QADISDEN 64

Query: 101 AVK---TALD-EAGPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            V    TA+D    P+  LV N G+ F    +E  + + +  ++  N+ G F   + A+ 
Sbjct: 65  QVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVK 124

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +  +  G   +I  +SS A ++G
Sbjct: 125 RMALKHGGSGGAIVNVSSAASRLG 148

Length = 247

>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R + ITG SSGIG   A     +G RV    R  E +   +     A G+E   +  D  
Sbjct: 5   RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE-----AEGLE--AFQLDYA 57

Query: 98  DFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           + +++   + +      G +D L  N     PG +E    + +R   + N  G   + + 
Sbjct: 58  EPESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRR 117

Query: 153 ALPLIKKRQNG 163
            +P+++K+  G
Sbjct: 118 VIPVMRKQGQG 128

Length = 277

>gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 21/128 (16%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSI-QLATGIEVATYS 93
           K + + +TGG+  IG  L  Q  K G +  I+    E KL E  + +       ++    
Sbjct: 1   KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFII 60

Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLM-------IDVNIIGS 146
            DVRD + ++ A  E GP D+ V +            +L  V  M       I  N++G+
Sbjct: 61  GDVRDKERLRRAFKERGP-DI-VFH----------AAALKHVPSMEDNPEEAIKTNVLGT 108

Query: 147 FHMIKAAL 154
            ++I AA+
Sbjct: 109 KNVIDAAI 116

UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287

>gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI-EVATYSA-DVRDF 99
           +TGG++ IG A+A      GARV+I+        +A     +A  + E A + A D+ D 
Sbjct: 11  VTGGATLIGAAVARALVAAGARVAIVDI------DADNGAAVAASLGERARFIATDITDD 64

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            A++ A+       G VD+LV     ++   L     D +  + DVN++ +  + +AA P
Sbjct: 65  AAIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAAL-DVNLVSAAMLAQAAHP 123

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +  R  G   +   +S++  Q G
Sbjct: 124 HL-ARGGGAIVNFTSISAKFAQTG 146

Length = 261

>gnl|CDD|181162 PRK07904, PRK07904, short chain dehydrogenase; Provisional

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGE-KLEEAKQSIQLATGIEVATYS 93
             + + + GG+S IGLA+  +  K   ARV + A   + + + A   ++ A    V    
Sbjct: 7   NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66

Query: 94  ADVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
            D  D D+    +D A   G VDV +V  G+    E   Q+  +   + ++N   +   +
Sbjct: 67  FDALDTDSHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAA---V 123

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQ 177
              + L +K +  G   I  MSS AG+
Sbjct: 124 SVGVLLGEKMRAQGFGQIIAMSSVAGE 150

Length = 253

>gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 18/129 (13%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSAD 95
            +   +TG S GIG   A   A  GA V +  R    +  +    I+ A G   +   AD
Sbjct: 6   GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIE-AAGGRASAVGAD 64

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDE---VRLMIDVNIIGSFH 148
           + D ++V     TA +E G +D LV+N      G +E   +DE   +RL  D       +
Sbjct: 65  LTDEESVAALMDTAREEFGGLDALVLN----ASGGMESG-MDEDYAMRLNRDAQR----N 115

Query: 149 MIKAALPLI 157
           + +AALPL+
Sbjct: 116 LARAALPLM 124

Length = 248

>gnl|CDD|187658 cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 2, complex (x)

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQL-ATGIEVATYSA 94
           D    ITGG  G+GL +A    + GAR + +  R        +    L   G EV   +A
Sbjct: 149 DATYLITGGLGGLGLLVAEWLVERGARHLVLTGRRAPSAAARQAIAALEEAGAEVVVLAA 208

Query: 95  DVRDFDAVKTALDEA 109
           DV D DA+  AL + 
Sbjct: 209 DVSDRDALAAALAQI 223

Ketoreductase, a module of the multidomain polyketide synthase, has 2 subdomains, each corresponding to a short-chain dehydrogenases/reductase (SDR) family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerizes but is composed of 2 subdomains, each resembling an SDR monomer. In some instances, as in porcine FAS, an enoyl reductase (a Rossman fold NAD binding domain of the MDR family) module is inserted between the sub-domains. The active site resembles that of typical SDRs, except that the usual positions of the catalytic asparagine and tyrosine are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular polyketide synthases are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) fatty acid synthase. In some instances, such as porcine FAS , an enoyl reductase module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consists of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthesis uses dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-ketoacyl reductase (KR), forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-enoyl reductase (ER). Polyketide syntheses also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes the KR domain of the Lyngbya majuscule Jam J, -K, and #L which are encoded on the jam gene cluster and are involved in the synthesis of the Jamaicamides (neurotoxins); Lyngbya majuscule Jam P belongs to a different KR_FAS_SDR_x subfamily. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 376

>gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATY 92
           +KD+ V +TG   GIG A+A + AKEG+ V + A+     EE  +++++    G E    
Sbjct: 4   LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKR--AEEMNETLKMVKENGGEGIGV 61

Query: 93  SADVRDFDA----VKTALDEAGPVDVLVVNQGV 121
            ADV   +      K  +D  G  D+LV N G+
Sbjct: 62  LADVSTREGCETLAKATIDRYGVADILVNNAGL 94

Length = 252

>gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV 89
               P   R +FITG S G+GLA A     +G  V + ARS ++  +AK       G   
Sbjct: 1   TRSPPPMKR-IFITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADAK---AACPGAAG 56

Query: 90  ATYSADVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
                D+      +   D+    G  D ++ N G+      +         M+ VN++
Sbjct: 57  VLI-GDLSSLAETRKLADQVNAIGRFDAVIHNAGILSGPNRKTPDTGIPA-MVAVNVL 112

Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260

>gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 15/145 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG SSGIG ALA      G  V   AR  E +E    +              DV D 
Sbjct: 4   VLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA-------GFTAVQLDVNDG 56

Query: 100 DAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
            A+    +    E G +DVL+ N G    G L    ++ +R   + N+     + +A  P
Sbjct: 57  AALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFP 116

Query: 156 LIKKRQ----NGGPASIALMSSQAG 176
           L+++ +    N G  S  L++  AG
Sbjct: 117 LLRRSRGLVVNIGSVSGVLVTPFAG 141

Length = 274

>gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R   I G S G+GL L  +  + G +V+   R  ++      ++Q   G+ +     +  
Sbjct: 2   RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT----ALQALPGVHIEKLDMNDP 57

Query: 98  D-FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
              D +   L      D+L VN G+  P     QS  +         IG   +  A  P+
Sbjct: 58  ASLDQLLQRLQGQ-RFDLLFVNAGISGP---AHQSAADA----TAAEIGQLFLTNAIAPI 109

Query: 157 -----IKKRQNGGPASIALMSSQAGQVG 179
                +  +   G   +A MSSQ G V 
Sbjct: 110 RLARRLLGQVRPGQGVLAFMSSQLGSVE 137

Length = 225

>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 33/145 (22%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSI---LARSGEKLEEAK-QSIQLATGIEVATYSAD 95
           V ITGG+  IG  LA    K+G  V     L R G     A  ++ +   G+       D
Sbjct: 3   VLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDGGVRF--VHGD 60

Query: 96  VRDFDAVKTA-------LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           +R+ + ++         +  A    V                S    RL  + N +G+ +
Sbjct: 61  IRNRNDLEDLFEDIDLIIHTAAQPSVTT--------------SASSPRLDFETNALGTLN 106

Query: 149 MIKAALPLIKKRQNGGPASIALMSS 173
           +++AA      RQ+   A     S+
Sbjct: 107 VLEAA------RQHAPNAPFIFTST 125

CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337

>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEG----ARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           + + ITG  SG G  +A + A++G    A V I  +      EA +       + V    
Sbjct: 3   KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAAR---RGLALRVEKL- 58

Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
            D+ D      A +    VDVL+ N G+   G +    ++ VR + + N+ G   + +  
Sbjct: 59  -DLTDAIDRAQAAEW--DVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGF 115

Query: 154 LPLIKKRQNGGPASIALMSSQAG 176
           +  +  R  G    +   SS AG
Sbjct: 116 VRKMVARGKG---KVVFTSSMAG 135

Length = 257

>gnl|CDD|187657 cd08954, KR_1_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 1, complex (x) SDRs

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 21  LLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGAR--VSILARSGEKLEEAK 78
           LL  +   K        +   ITGGS G+GL +     K GA   + IL+RSG K E   
Sbjct: 202 LLLDLSILKTNYPINLGKSYLITGGSGGLGLEILKWLVKRGAVENIIILSRSGMKWELEL 261

Query: 79  QSIQL-ATGIEVATYSADVRDFDAVKTALDEA------GPVDVLVVNQGVF 122
              +  +  I+    S DV D  +++ A++        GP+       G+F
Sbjct: 262 LIREWKSQNIKFHFVSVDVSDVSSLEKAINLILNAPKIGPIG------GIF 306

NADP-dependent KR domain of the multidomain type I FAS, a complex SDR family. This subfamily also includes proteins identified as polyketide synthase (PKS), a protein with related modular protein architecture and similar function. It includes the KR domains of mammalian and chicken FAS, and Dictyostelium discoideum putative polyketide synthases (PKSs). These KR domains contain two subdomains, each of which is related to SDR Rossmann fold domains. However, while the C-terminal subdomain has an active site similar to the other SDRs and a NADP-binding capability, the N-terminal SDR-like subdomain is truncated and lacks these functions, serving a supportive structural role. In some instances, such as porcine FAS, an enoyl reductase (a Rossman fold NAD-binding domain of the medium-chain dehydrogenase/reductase, MDR family) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consists of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthesis uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-ketoacyl reductase (KR), forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-enoyl reductase (ER); this KR and ER are members of the SDR family. This KR subfamily has an active site tetrad with a similar 3D orientation compared to archetypical SDRs, but the active site Lys and Asn residue positions are swapped. The characteristic NADP-binding is typical of the multidomain complex SDRs, with a GGXGXXG NADP binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 452

>gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 34/142 (23%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + ITG +SGIG A A      G  V                  +   +  A   AD+   
Sbjct: 2   IVITGAASGIGAATAELLEDAGHTV------------------IGIDLREADVIADLSTP 43

Query: 100 DAVKTALDE-----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           +    A+ +     +G +D LV   GV               L++ VN  G   +++A L
Sbjct: 44  EGRAAAIADVLARCSGVLDGLVNCAGVGGTTVAG--------LVLKVNYFGLRALMEALL 95

Query: 155 PLIKKRQNGGPASIALMSSQAG 176
           P ++K       +  ++SS AG
Sbjct: 96  PRLRKGHGP---AAVVVSSIAG 114

Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V I G S GIG     Q   +G RV   AR    L   +     A G E    + DV D 
Sbjct: 4   VLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ-----ALGAE--ALALDVADP 56

Query: 100 DAVKTALD---EAGPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            +V   L    +   +D  V   GV+ P    +E  + ++   ++  N++G   ++   L
Sbjct: 57  ASV-AGLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILL 115

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           PL++         +A++SS+ G +G
Sbjct: 116 PLVEAAG----GVLAVLSSRMGSIG 136

Length = 222

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 14  LPLTLLLLLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK 73
           LPL  L     +     ++       V + G + G+G A    A   GA V  +  S EK
Sbjct: 123 LPLAGLTAWLALFDRAGLK---PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEK 179

Query: 74  LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLD 133
           LE  K+          A +  + R+ D V+   +  G   V VV   V   G+    SL 
Sbjct: 180 LELLKELG--------ADHVINYREEDFVEQVRELTGGKGVDVVLDTVG--GDTFAASLA 229

Query: 134 EVR 136
            + 
Sbjct: 230 ALA 232

Length = 326

>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   + GG+  +G   A   A+EGARV ++ R  E+ ++A  S++   G  V   + 
Sbjct: 26  LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVG--AV 83

Query: 95  DVRDFDAVKTALDEAGPVDVLVVN--QGVFVPGELEVQSLDEVRLMIDVN 142
           +  D  A   A+  A   DV+      GV +  +L   +   + +  DVN
Sbjct: 84  ETSDDAARAAAIKGA---DVVFAAGAAGVELLEKLA-WAPKPLAVAADVN 129

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 194

>gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG +SGIG  LA   AK+G +V    R+   L+E            + T + DV D 
Sbjct: 4   VLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT-----QSANIFTLAFDVTDH 58

Query: 100 DAVKTALDEAGPV-DVLVVNQG---VFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
              K AL +   + ++ + N G       G+++   +  V    +VN++G  + I+   P
Sbjct: 59  PGTKAALSQLPFIPELWIFNAGDCEYMDDGKVDATLMARV---FNVNVLGVANCIEGIQP 115

Length = 240

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSAD 95
            + + ITG +SGIG   A   A  GA V +  R+  +   A   I +      V   + D
Sbjct: 1   GKVIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKARVEAMTLD 60

Query: 96  VRDFDAVKTALDE----AGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           +    +V+   +       P+ VLV N  VF +P  L    L+       VN +G F+++
Sbjct: 61  LASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLTEDGLETT---FQVNHLGHFYLV 117

Query: 151 KAALPLIKKRQNGGPASIALMSSQA 175
           +    ++++     PA + ++SS++
Sbjct: 118 QLLEDVLRR---SAPARVIVVSSES 139

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 16/115 (13%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + +TG +  +G  L      +G RV  L RSG               +EV     D+ D 
Sbjct: 1   ILVTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVL-----LDGLPVEVVE--GDLTDA 53

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            ++  A+      D +                  + + +   N+ G+ +++ AAL
Sbjct: 54  ASLAAAMKG---CDRVFHLAAFTSL------WAKDRKELYRTNVEGTRNVLDAAL 99

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 44  GGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV---RDFD 100
              + I  A+A  AA+EGA V +L      L       +LA  +       DV    D D
Sbjct: 3   ADDNSIAWAIAKAAAEEGAEV-VLTTWPPALRMGAVD-ELAKELPADVIPLDVTSDEDID 60

Query: 101 AV-KTALDEAGPVDVLVVNQGVFVPGELEVQSLD----EVRLMIDVNIIGSFH-MIKAAL 154
            + +   ++ G +D LV +  +          LD         +D++   SF  + KAA 
Sbjct: 61  ELFEKVKEDGGKIDFLVHSIAMSPEIRKGKPYLDTSREGFLKALDISAY-SFISLAKAAK 119

Query: 155 PLIKKRQNGGPASIALMSSQAGQ 177
           PL+ +   GG  SI  +S  A +
Sbjct: 120 PLMNE---GG--SIVALSYIAAE 137

Length = 239

>gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYS 93
           +  +   +TG S GIG  +A Q  + GA V I  R+   +L    + I+   G  +    
Sbjct: 1   LSGKIALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIEARGGKCIPVR- 59

Query: 94  ADVRDFDAVKTALD-----EAGPVDVLVVN 118
            D  D D V+   +     + G +D+LV N
Sbjct: 60  CDHSDDDEVEALFERVAREQQGRLDILVNN 89

This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSI-QLATGIEVATY 92
           +  + V +TGG   IG  L  Q  K   +  IL    E KL      + +    +++  Y
Sbjct: 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFY 307

Query: 93  SADVRDFDAVKTALDEAGP 111
             DVRD D V+ A++    
Sbjct: 308 IGDVRDRDRVERAMEGHKV 326

Length = 588

>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY-SADV 96
           +   +TGG+ GIG A   +  + GARV   ARS           +     E   + +AD+
Sbjct: 10  KRALVTGGTKGIGAATVARLLEAGARVVTTARS-----------RPDDLPEGVEFVAADL 58

Query: 97  RDFDAVKT----ALDEAGPVDVLVVNQG 120
              +         L+  G VD+LV   G
Sbjct: 59  TTAEGCAAVARAVLERLGGVDILVHVLG 86

Length = 260

>gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 14/136 (10%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ--LATGIEVATY 92
           +K +   +TG S GIG A+A + A +GA V+I    G + EEA++++    + G    + 
Sbjct: 2   LKGKVALVTGASRGIGRAIAKRLANDGALVAI--HYGNRKEEAEETVYEIQSNGGSAFSI 59

Query: 93  SADVRDFDAVK---TALDE-------AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
            A++     V+   ++LD        +   D+L+ N G+     +E  +      M+ VN
Sbjct: 60  GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVN 119

Query: 143 IIGSFHMIKAALPLIK 158
               F +I+ AL  ++
Sbjct: 120 AKAPFFIIQQALSRLR 135

Length = 252

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 20/82 (24%)

Query: 40  VFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADV-- 96
           V I GG+SG+G A A Q AK  GARV   A S EKLE  +               ADV  
Sbjct: 143 VLIHGGASGVGTA-AIQLAKALGARVIATAGSEEKLEACRA------------LGADVAI 189

Query: 97  ----RDFDAVKTALDEAGPVDV 114
                DF            VDV
Sbjct: 190 NYRTEDFAEEVKEATGGRGVDV 211

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 16/118 (13%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATYSAD 95
           R+V ITG S G+G A+A+Q  ++G  V  ++R+     E K+  +LA      +  +S D
Sbjct: 2   RYVIITGTSQGLGEAIANQLLEKGTHVISISRT-----ENKELTKLAEQYNSNLTFHSLD 56

Query: 96  VRD-------FDAVKTALDEAGPVDV-LVVNQGVFVP-GELEVQSLDEVRLMIDVNII 144
           ++D       F+ + +++ E     + L+ N G+  P   +E    +E+   + +N++
Sbjct: 57  LQDVHELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLL 114

Length = 251

>gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K + + ITG    IG AL     + G  V       E L E  +S+      +  +   
Sbjct: 2   LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVE 61

Query: 95  -DVRDFDAVKTALDEA----GPVDVLV 116
            D+ D ++++  L ++    G +D  V
Sbjct: 62  LDITDQESLEEFLSKSAEKYGKIDGAV 88

Length = 256

>gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein

 Score = 38.2 bits (90), Expect = 9e-04
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEE-AKQSIQLATGIEVATYSADVR 97
           V +TGG   IG  L  Q  K   +  IL    E KL E  ++  Q     ++  +  DVR
Sbjct: 1   VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQELRQEYNDPKLRFFIGDVR 60

Query: 98  DFDAVKTALDEAGP 111
           D + ++ A+++ G 
Sbjct: 61  DRERLERAMEQHGV 74

This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280

>gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase

 Score = 38.4 bits (89), Expect = 9e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 42 ITGGSSGIGLALAHQAAK----EGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADV 96
          +TG S G G  +A + AK     G+ + + AR+ E L + K  I     G+ V   S D+
Sbjct: 5  VTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDL 64

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           + G +   G  L  +    G +V+ L+R+  K      +       ++A  +  +   DA
Sbjct: 3   VIGATGKTGRRLVKELLARGHQVTALSRNPSKAPAPGVTPVQKDLFDLADLAEALAGVDA 62

Query: 102 V 102
           V
Sbjct: 63  V 63

Length = 182

>gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL--ATGIEVATYSADVRDF 99
           +TG  +G+G  +A   A+ G  +      G  + E  ++I+   A G    + +AD+R  
Sbjct: 15  VTGCDTGLGQGMALGLAEAGCDIV-----GINIVEPTETIEQVTALGRRFLSLTADLRKI 69

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPG---ELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           D +   L+ A    G +D+LV N G+       E   +  D+V   +++NI   F M +A
Sbjct: 70  DGIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDV---MNLNIKSVFFMSQA 126

Query: 153 ALPLIKKRQNGGP-ASIALMSSQAGQV 178
           A      + NGG   +IA M S  G +
Sbjct: 127 AAKHFIAQGNGGKIINIASMLSFQGGI 153

Length = 253

>gnl|CDD|236389 PRK09134, PRK09134, short chain dehydrogenase; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADV 96
           R   +TG +  IG A+A   A  G  V++   RS ++ E     I+ A G       AD+
Sbjct: 10  RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIR-ALGRRAVALQADL 68

Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVF 122
            D   V+  +  A    GP+ +LV N  +F
Sbjct: 69  ADEAEVRALVARASAALGPITLLVNNASLF 98

Length = 258

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG +  +G A+     ++G  V +L R        +       G++V     D+RD 
Sbjct: 3   VLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLE-------GLDVEIVEGDLRDP 55

Query: 100 DAVKTAL 106
            +++ A+
Sbjct: 56  ASLRKAV 62

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + +TGG+  IG  L  +  +EG  V +L R           I+   G        D+ D 
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNTGRIRFHEG--------DLTDP 52

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           DA++  L E  P D  V++           +   +    I  N++G+  +++AA 
Sbjct: 53  DALERLLAEVQP-DA-VIHLAAQSGVGASFEDPAD---FIRANVLGTLRLLEAAR 102

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|183716 PRK12744, PRK12744, short chain dehydrogenase; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQL--ATGIEVAT 91
           +K + V I GG+  +G  +A   A +GA+ V+I   S     +A++++    A G +   
Sbjct: 6   LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVA 65

Query: 92  YSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           + AD+    AV+   D+A    G  D+ +   G  +   +   S  E   M  VN   +F
Sbjct: 66  FQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAF 125

Query: 148 HMIKAA 153
             IK A
Sbjct: 126 FFIKEA 131

Length = 257

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 12/84 (14%)

Query: 40  VFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
           V + G  SG+G A A Q AK  GA V   A S +KLE AK       G   A Y  D R 
Sbjct: 170 VLVHGAGSGVGSA-AIQIAKLFGATVIATAGSEDKLERAK-----ELG---ADYVIDYRK 220

Query: 99  FDAVKTALDEAGP--VDVLVVNQG 120
            D V+   +  G   VDV+V + G
Sbjct: 221 EDFVREVRELTGKRGVDVVVEHVG 244

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSIL--ARSGEKLEEAKQSIQLATGIEVAT 91
           P+  +   +TG + GIG A+A   A++GA V  L    +GE L        +A  +    
Sbjct: 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAA------VANRVGGTA 260

Query: 92  YSADVRDFDAVKT----ALDEAGPVDVLVVNQGV 121
            + D+   DA         +  G +D++V N G+
Sbjct: 261 LALDITAPDAPARIAEHLAERHGGLDIVVHNAGI 294

Length = 450

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	100.0
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	100.0
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	100.0
COG0300	265	DltE Short-chain dehydrogenases of various substra	100.0
PRK08339	263	short chain dehydrogenase; Provisional	99.96
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.95
PLN02780	320	ketoreductase/ oxidoreductase	99.95
PRK06139	330	short chain dehydrogenase; Provisional	99.95
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.95
PRK07062	265	short chain dehydrogenase; Provisional	99.95
PRK06125	259	short chain dehydrogenase; Provisional	99.94
PRK07063	260	short chain dehydrogenase; Provisional	99.94
PRK05876	275	short chain dehydrogenase; Provisional	99.94
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.94
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.94
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.94
PRK05854	313	short chain dehydrogenase; Provisional	99.94
PRK07791	286	short chain dehydrogenase; Provisional	99.94
PRK06114	254	short chain dehydrogenase; Provisional	99.94
PRK05872	296	short chain dehydrogenase; Provisional	99.94
PRK07109	334	short chain dehydrogenase; Provisional	99.93
KOG0725	270	consensus Reductases with broad range of substrate	99.93
PRK05867	253	short chain dehydrogenase; Provisional	99.93
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.93
PRK08862	227	short chain dehydrogenase; Provisional	99.93
PRK07478	254	short chain dehydrogenase; Provisional	99.93
KOG1208	314	consensus Dehydrogenases with different specificit	99.93
PRK07825	273	short chain dehydrogenase; Provisional	99.93
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.93
PRK08303	305	short chain dehydrogenase; Provisional	99.93
PRK08589	272	short chain dehydrogenase; Validated	99.93
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.93
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.93
PRK06194	287	hypothetical protein; Provisional	99.93
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.93
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.92
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.92
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.92
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.92
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.92
PLN02253	280	xanthoxin dehydrogenase	99.92
PRK06398	258	aldose dehydrogenase; Validated	99.92
PRK08265	261	short chain dehydrogenase; Provisional	99.92
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.92
PRK05866	293	short chain dehydrogenase; Provisional	99.92
PRK09242	257	tropinone reductase; Provisional	99.92
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.92
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.92
PRK07677	252	short chain dehydrogenase; Provisional	99.92
PRK07024	257	short chain dehydrogenase; Provisional	99.92
PRK05599	246	hypothetical protein; Provisional	99.92
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.92
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.92
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.92
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.92
PRK05993	277	short chain dehydrogenase; Provisional	99.92
PRK05717	255	oxidoreductase; Validated	99.92
PRK06172	253	short chain dehydrogenase; Provisional	99.92
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.92
PRK08267	260	short chain dehydrogenase; Provisional	99.92
PRK06138	252	short chain dehydrogenase; Provisional	99.92
PRK09072	263	short chain dehydrogenase; Provisional	99.92
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.92
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.92
PRK12747	252	short chain dehydrogenase; Provisional	99.92
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.92
PRK07890	258	short chain dehydrogenase; Provisional	99.92
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.91
PRK07576	264	short chain dehydrogenase; Provisional	99.91
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
PRK07831	262	short chain dehydrogenase; Provisional	99.91
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK08643	256	acetoin reductase; Validated	99.91
PRK08278	273	short chain dehydrogenase; Provisional	99.91
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.91
PRK07814	263	short chain dehydrogenase; Provisional	99.91
PRK08251	248	short chain dehydrogenase; Provisional	99.91
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.91
PRK05855	582	short chain dehydrogenase; Validated	99.91
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.91
PRK06182	273	short chain dehydrogenase; Validated	99.91
PRK07035	252	short chain dehydrogenase; Provisional	99.91
PRK06180	277	short chain dehydrogenase; Provisional	99.91
PRK09186	256	flagellin modification protein A; Provisional	99.91
PRK07904	253	short chain dehydrogenase; Provisional	99.91
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.91
PRK07102	243	short chain dehydrogenase; Provisional	99.91
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.91
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.91
PRK07856	252	short chain dehydrogenase; Provisional	99.91
PLN00015	308	protochlorophyllide reductase	99.91
PRK12939	250	short chain dehydrogenase; Provisional	99.91
PRK05650	270	short chain dehydrogenase; Provisional	99.91
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.91
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.91
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK07067	257	sorbitol dehydrogenase; Provisional	99.91
PRK06841	255	short chain dehydrogenase; Provisional	99.91
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
PRK08263	275	short chain dehydrogenase; Provisional	99.91
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.91
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.9
PRK06128	300	oxidoreductase; Provisional	99.9
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.9
PRK07985	294	oxidoreductase; Provisional	99.9
PRK08628	258	short chain dehydrogenase; Provisional	99.9
PRK07832	272	short chain dehydrogenase; Provisional	99.9
PRK06197	306	short chain dehydrogenase; Provisional	99.9
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.9
PRK06484	520	short chain dehydrogenase; Validated	99.9
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.9
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.9
PRK07774	250	short chain dehydrogenase; Provisional	99.9
PRK06179	270	short chain dehydrogenase; Provisional	99.9
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.9
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
PRK06196	315	oxidoreductase; Provisional	99.9
PRK12743	256	oxidoreductase; Provisional	99.9
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.9
PRK06914	280	short chain dehydrogenase; Provisional	99.9
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.9
PRK08703	239	short chain dehydrogenase; Provisional	99.9
PRK07454	241	short chain dehydrogenase; Provisional	99.9
PRK06484	520	short chain dehydrogenase; Validated	99.9
PRK06500	249	short chain dehydrogenase; Provisional	99.9
PRK06701	290	short chain dehydrogenase; Provisional	99.9
PRK06483	236	dihydromonapterin reductase; Provisional	99.9
PRK06523	260	short chain dehydrogenase; Provisional	99.9
PRK06482	276	short chain dehydrogenase; Provisional	99.9
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.9
PRK08226	263	short chain dehydrogenase; Provisional	99.9
PRK05693	274	short chain dehydrogenase; Provisional	99.9
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.89
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.89
PRK06057	255	short chain dehydrogenase; Provisional	99.89
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.89
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.89
PRK05875	276	short chain dehydrogenase; Provisional	99.89
PRK06123	248	short chain dehydrogenase; Provisional	99.89
PRK09134	258	short chain dehydrogenase; Provisional	99.89
PRK12937	245	short chain dehydrogenase; Provisional	99.89
PRK06949	258	short chain dehydrogenase; Provisional	99.89
PRK07775	274	short chain dehydrogenase; Provisional	99.89
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.89
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.89
PRK07326	237	short chain dehydrogenase; Provisional	99.89
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.89
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.89
PRK08264	238	short chain dehydrogenase; Validated	99.89
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK06198	260	short chain dehydrogenase; Provisional	99.89
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.89
PRK10538	248	malonic semialdehyde reductase; Provisional	99.88
PRK09291	257	short chain dehydrogenase; Provisional	99.88
PRK12746	254	short chain dehydrogenase; Provisional	99.88
PRK12742	237	oxidoreductase; Provisional	99.88
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.88
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK07069	251	short chain dehydrogenase; Validated	99.88
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.88
PRK06101	240	short chain dehydrogenase; Provisional	99.88
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.88
PRK07060	245	short chain dehydrogenase; Provisional	99.88
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.88
PRK06181	263	short chain dehydrogenase; Provisional	99.88
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.88
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.88
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.88
PRK07201	657	short chain dehydrogenase; Provisional	99.88
PRK12828	239	short chain dehydrogenase; Provisional	99.88
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.88
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK07074	257	short chain dehydrogenase; Provisional	99.87
PRK12827	249	short chain dehydrogenase; Provisional	99.87
PRK06940	275	short chain dehydrogenase; Provisional	99.87
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK12744	257	short chain dehydrogenase; Provisional	99.87
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.87
PRK05884	223	short chain dehydrogenase; Provisional	99.87
PRK12367	245	short chain dehydrogenase; Provisional	99.87
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK12829	264	short chain dehydrogenase; Provisional	99.87
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
COG1028	251	FabG Dehydrogenases with different specificities (	99.87
PRK07041	230	short chain dehydrogenase; Provisional	99.86
PRK06720	169	hypothetical protein; Provisional	99.86
PRK07578	199	short chain dehydrogenase; Provisional	99.86
PRK09135	249	pteridine reductase; Provisional	99.86
PRK08324	681	short chain dehydrogenase; Validated	99.86
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.86
PRK07023	243	short chain dehydrogenase; Provisional	99.85
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK08017	256	oxidoreductase; Provisional	99.85
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.85
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.84
PRK06953	222	short chain dehydrogenase; Provisional	99.84
PRK08177	225	short chain dehydrogenase; Provisional	99.84
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.84
PRK07577	234	short chain dehydrogenase; Provisional	99.84
PRK08219	227	short chain dehydrogenase; Provisional	99.84
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.83
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
PRK06924	251	short chain dehydrogenase; Provisional	99.83
PRK07806	248	short chain dehydrogenase; Provisional	99.8
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.79
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.78
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.78
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.78
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.72
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.71
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.68
PLN02572	442	UDP-sulfoquinovose synthase	99.68
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.68
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.68
PLN03209	576	translocon at the inner envelope of chloroplast su	99.68
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.67
PLN02653	340	GDP-mannose 4,6-dehydratase	99.66
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.66
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.65
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.65
PLN00198	338	anthocyanidin reductase; Provisional	99.65
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.63
PLN02214	342	cinnamoyl-CoA reductase	99.63
PLN02240	352	UDP-glucose 4-epimerase	99.62
PLN02583	297	cinnamoyl-CoA reductase	99.61
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.61
PLN02650	351	dihydroflavonol-4-reductase	99.6
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.58
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.57
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.57
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.55
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.55
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.53
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.52
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.51
PLN02427	386	UDP-apiose/xylose synthase	99.5
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.46
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.46
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.45
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.43
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.43
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.43
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.42
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.42
PLN02686	367	cinnamoyl-CoA reductase	99.42
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.37
PLN02260	668	probable rhamnose biosynthetic enzyme	99.37
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.36
CHL00194	317	ycf39 Ycf39; Provisional	99.34
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.33
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.3
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.28
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.27
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.26
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.26
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.26
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.24
PRK05865	854	hypothetical protein; Provisional	99.22
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.21
PLN02206	442	UDP-glucuronate decarboxylase	99.2
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.19
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.17
PLN02996	491	fatty acyl-CoA reductase	99.15
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.15
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.14
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.13
PLN02503	605	fatty acyl-CoA reductase 2	99.11
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	99.1
PRK07201	657	short chain dehydrogenase; Provisional	99.1
PLN02778	298	3,5-epimerase/4-reductase	99.08
PRK08309	177	short chain dehydrogenase; Provisional	99.05
PRK12320	699	hypothetical protein; Provisional	99.02
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.01
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.0
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	98.99
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.92
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.88
PLN02260	668	probable rhamnose biosynthetic enzyme	98.87
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.86
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.85
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	98.84
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	98.8
PLN00016	378	RNA-binding protein; Provisional	98.75
PF08643	299	DUF1776: Fungal family of unknown function (DUF177	98.72
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.7
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.67
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.6
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.6
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.56
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.56
COG3320	382	Putative dehydrogenase domain of multifunctional n	98.54
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.5
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.44
PRK09620	229	hypothetical protein; Provisional	98.42
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.4
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	98.36
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.36
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.36
PRK14982	340	acyl-ACP reductase; Provisional	98.31
COG2910	211	Putative NADH-flavin reductase [General function p	98.26
PTZ00325	321	malate dehydrogenase; Provisional	98.2
COG4982	866	3-oxoacyl-[acyl-carrier protein]	98.14
PLN00106	323	malate dehydrogenase	98.09
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.07
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.05
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	98.02
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	98.02
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	98.02
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	97.92
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.9
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.88
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.86
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.85
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.83
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.79
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.78
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.76
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.75
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.73
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.72
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.72
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	97.7
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.68
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.66
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.65
COG2130	340	Putative NADP-dependent oxidoreductases [General f	97.63
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.63
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.63
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.62
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	97.6
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.59
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.59
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.58
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.55
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.54
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.52
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.52
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.51
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.51
COG3268	382	Uncharacterized conserved protein [Function unknow	97.5
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.5
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	97.48
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.48
PRK05086	312	malate dehydrogenase; Provisional	97.47
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.44
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.44
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.43
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.42
PRK14968	188	putative methyltransferase; Provisional	97.4
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.4
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.39
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	97.38
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.34
PRK06849	389	hypothetical protein; Provisional	97.34
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.33
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.32
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.32
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.31
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	97.25
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.24
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.24
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.23
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.22
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.22
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.21
PRK09496	453	trkA potassium transporter peripheral membrane com	97.21
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.19
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.19
PRK04148	134	hypothetical protein; Provisional	97.15
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	97.14
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	97.13
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.1
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.1
PLN00203	519	glutamyl-tRNA reductase	97.07
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.06
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.05
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.05
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	97.05
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.04
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.04
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.04
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	97.04
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	97.0
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.99
PRK08223	287	hypothetical protein; Validated	96.99
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.99
PTZ00117	319	malate dehydrogenase; Provisional	96.97
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.94
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	96.94
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.94
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	96.91
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	96.9
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	96.89
PRK08328	231	hypothetical protein; Provisional	96.86
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	96.86
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.86
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	96.83
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.82
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.82
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	96.82
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.79
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.78
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.77
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.77
PRK10669	558	putative cation:proton antiport protein; Provision	96.76
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.75
PLN02740	381	Alcohol dehydrogenase-like	96.74
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.74
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.74
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.73
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	96.71
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.7
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.7
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.69
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.66
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	96.66
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.65
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.65
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	96.64
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.64
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	96.64
PRK09496	453	trkA potassium transporter peripheral membrane com	96.63
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.62
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.62
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.61
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.61
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	96.61
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	96.6
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.6
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.58
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.57
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.57
PRK12480	330	D-lactate dehydrogenase; Provisional	96.56
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.55
PRK13243	333	glyoxylate reductase; Reviewed	96.54
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.54
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	96.54
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.53
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.53
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.53
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.52
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.52
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.51
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.5
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.49
PLN02602	350	lactate dehydrogenase	96.48
PRK06487	317	glycerate dehydrogenase; Provisional	96.45
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.45
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	96.45
PLN02928	347	oxidoreductase family protein	96.44
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.44
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.44
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	96.41
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	96.41
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.41
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.4
PTZ00354	334	alcohol dehydrogenase; Provisional	96.4
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	96.4
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.39
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.38
PRK13771	334	putative alcohol dehydrogenase; Provisional	96.38
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.36
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	96.34
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	96.33
PRK14851	679	hypothetical protein; Provisional	96.33
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.3
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.29
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	96.29
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	96.28
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.28
PRK07411	390	hypothetical protein; Validated	96.27
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	96.27
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.26
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.26
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	96.26
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	96.25
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	96.25
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.25
PF12076	164	Wax2_C: WAX2 C-terminal domain; InterPro: IPR02194	96.25
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.24
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.22
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.22
PRK06223	307	malate dehydrogenase; Reviewed	96.2
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.2
PRK06932	314	glycerate dehydrogenase; Provisional	96.19
PRK08655	437	prephenate dehydrogenase; Provisional	96.19
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	96.19
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.19
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.18
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.17
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	96.16
PRK07574	385	formate dehydrogenase; Provisional	96.16
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.15
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.15

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.4e-32  Score=203.83  Aligned_cols=144  Identities=33%  Similarity=0.468  Sum_probs=132.6

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ...+.+|+.+|||||++|+|+++|++|+++|++++++|.+.+..+++.+++... | +++.+.||+++.+++.+..++  
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~-g-~~~~y~cdis~~eei~~~a~~Vk  109 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI-G-EAKAYTCDISDREEIYRLAKKVK  109 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc-C-ceeEEEecCCCHHHHHHHHHHHH
Confidence            444579999999999999999999999999999999999999999999988765 3 899999999999998776544  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        .|++|++|||||.....++.+.++|++++++++|+.|.++++++++|.|.++++|   .||.++|++|..|
T Consensus       110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~G---HIV~IaS~aG~~g  179 (300)
T KOG1201|consen  110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNG---HIVTIASVAGLFG  179 (300)
T ss_pred             HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCc---eEEEehhhhcccC
Confidence              6899999999999999999999999999999999999999999999999998877   9999999999765

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=100.00  E-value=4.8e-32  Score=198.10  Aligned_cols=139  Identities=37%  Similarity=0.506  Sum_probs=127.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~  109 (179)
                      .+++|.++|||||+|||.++|++|+++|++|++++|+.+++++...++..   ..+.....|++|.++++..++    ++
T Consensus         3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~   79 (246)
T COG4221           3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEF   79 (246)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhh
Confidence            35789999999999999999999999999999999999999998888753   568889999999999766654    57


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++++++|+.|.++.+++++|.|.+++.|   .|||+||++|..
T Consensus        80 g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G---~IiN~~SiAG~~  145 (246)
T COG4221          80 GRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSG---HIINLGSIAGRY  145 (246)
T ss_pred             CcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCc---eEEEeccccccc
Confidence            899999999999888999999999999999999999999999999999999876   999999999865

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.8e-32  Score=205.55  Aligned_cols=144  Identities=40%  Similarity=0.593  Sum_probs=130.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCce-EEEEEeeCCCHHHHHHHHH----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE-VATYSADVRDFDAVKTALD----  107 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~v~~~~~----  107 (179)
                      ..+.||+++|||||+|||.++|++|+++|++++++.|+.+++++..+++......+ +..+++|++|.+++++.++    
T Consensus         8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~   87 (282)
T KOG1205|consen    8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR   87 (282)
T ss_pred             HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999988887655555 9999999999999988774    


Q ss_pred             hhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          108 EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       108 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      .+|++|+||||||.......++.+.++.+..|++|++|+.+++++++|+|++++.|   .||++||++|..+
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~G---hIVvisSiaG~~~  156 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDG---HIVVISSIAGKMP  156 (282)
T ss_pred             hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCC---eEEEEeccccccC
Confidence            46899999999999887777888999999999999999999999999999999855   9999999999864

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=100.00  E-value=1.5e-31  Score=200.25  Aligned_cols=143  Identities=40%  Similarity=0.559  Sum_probs=133.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++++++|||||+|||.++|++|+++|++|+++.|+++++++..+++....+.++..+++|++++++++++.++    .
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999999999999999987889999999999999999887764    2


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      .++|+||||||....+++.+.++++.++++++|+.++..+++.++|.|.+++.|   .|+||+|.+|..+
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G---~IiNI~S~ag~~p  149 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAG---HIINIGSAAGLIP  149 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---eEEEEechhhcCC
Confidence            579999999999999999999999999999999999999999999999998876   9999999998764

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.96  E-value=3.4e-27  Score=179.50  Aligned_cols=142  Identities=23%  Similarity=0.390  Sum_probs=125.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---hC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---AG  110 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~~  110 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++..+.+|++|++++++++++   ++
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            468999999999999999999999999999999999998888777776544456788899999999999887765   47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.|   +||++||.++..
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g---~Ii~isS~~~~~  149 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFG---RIIYSTSVAIKE  149 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC---EEEEEcCccccC
Confidence            89999999998777778889999999999999999999999999999876544   999999987654

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.95  E-value=3.7e-27  Score=177.38  Aligned_cols=141  Identities=30%  Similarity=0.397  Sum_probs=125.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHH-HHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAV-KTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v-~~~~~~~--~~i  112 (179)
                      .|++++||||+.|||+++|++||++|.+|++++|++++++.+.+|+....+.++..+.+|+++.+.+ +++.+..  .++
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V  127 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV  127 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence            4699999999999999999999999999999999999999999999988889999999999988763 3344433  366


Q ss_pred             cEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      .+||||+|...  |..+.+.+.+.+++.+.+|..++..+++..+|.|.++++|   .|+|+||.+|..+
T Consensus       128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G---~IvnigS~ag~~p  193 (312)
T KOG1014|consen  128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKG---IIVNIGSFAGLIP  193 (312)
T ss_pred             EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCc---eEEEecccccccc
Confidence            78999999887  5567788888999999999999999999999999998876   9999999998764

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.95  E-value=6.1e-26  Score=177.07  Aligned_cols=140  Identities=29%  Similarity=0.389  Sum_probs=118.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCC--HHHHHHHHHhhC-
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRD--FDAVKTALDEAG-  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~--~~~v~~~~~~~~-  110 (179)
                      ..|++++||||++|||+++|++|+++|++|++++|+++++++..+++.... +.++..+.+|+++  .+.++++.+..+ 
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            469999999999999999999999999999999999999988888876543 3577888999985  455566666554 


Q ss_pred             -CCcEEEecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 -PVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 -~id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++|++|||||...+  .++.+.+++++++.+++|+.|++.+++.++|.|.+++.|   +||++||.+|.
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g---~IV~iSS~a~~  197 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKG---AIINIGSGAAI  197 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc---EEEEEechhhc
Confidence             46699999998653  457788999999999999999999999999999887654   99999998874

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.95  E-value=6.2e-26  Score=177.63  Aligned_cols=142  Identities=37%  Similarity=0.488  Sum_probs=126.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ..+++|+++||||++|||++++++|+++|++|++++|+++.+++..+++.. .+.++..+.+|++|.++++++++.    
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~-~g~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA-LGAEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999999999988888777754 366788889999999999887754    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||....+++.+.+.+++++.+++|+.+++++++.++|.|++++.+   .||++||..+..
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g---~iV~isS~~~~~  148 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHG---IFINMISLGGFA  148 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC---EEEEEcChhhcC
Confidence            4789999999998888888899999999999999999999999999999887654   999999987754

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.95  E-value=2.5e-26  Score=162.10  Aligned_cols=143  Identities=31%  Similarity=0.387  Sum_probs=124.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++.|.++|||+++|||+++++.|++.|++|.+.|++....+++...+..-  .+...+.||+++.++++..+++    .
T Consensus        11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~--~~h~aF~~DVS~a~~v~~~l~e~~k~~   88 (256)
T KOG1200|consen   11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY--GDHSAFSCDVSKAHDVQNTLEEMEKSL   88 (256)
T ss_pred             HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC--CccceeeeccCcHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999999999988888777766421  3556789999999998776654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++++++||||...+..+..++.++|++.+.+|+.|.|.++|++.+.|...+. .+.+|||+||+.|.+|
T Consensus        89 g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~-~~~sIiNvsSIVGkiG  157 (256)
T KOG1200|consen   89 GTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQ-QGLSIINVSSIVGKIG  157 (256)
T ss_pred             CCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcC-CCceEEeehhhhcccc
Confidence            89999999999999999999999999999999999999999999998766554 3569999999999876

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1e-25  Score=171.28  Aligned_cols=144  Identities=28%  Similarity=0.348  Sum_probs=125.4

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ..++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++.... +.++..+.+|++|.+++++++++  
T Consensus         3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T PRK07062          3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE   82 (265)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999988877777665443 34788899999999998887654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +|+++||.++..
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  151 (265)
T PRK07062         83 ARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAA---SIVCVNSLLALQ  151 (265)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCc---EEEEeccccccC
Confidence              5789999999998777788888999999999999999999999999999876544   999999988754

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.94  E-value=2.1e-25  Score=169.07  Aligned_cols=143  Identities=30%  Similarity=0.458  Sum_probs=127.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +++++|+++|||+++|||++++++|+++|++|++++|++++.++..+++....+.++..+.+|+++++++++++++++++
T Consensus         3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   82 (259)
T PRK06125          3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDI   82 (259)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence            45689999999999999999999999999999999999888877777776544567888999999999999999988899


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||+|.....++.+.+.++|+.++++|+.+++.+++.++|.|.+++.+   +|+++||..+..
T Consensus        83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~iv~iss~~~~~  145 (259)
T PRK06125         83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSG---VIVNVIGAAGEN  145 (259)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc---EEEEecCccccC
Confidence            999999998777788889999999999999999999999999999876544   899999987653

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.7e-25  Score=169.57  Aligned_cols=142  Identities=30%  Similarity=0.398  Sum_probs=122.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|++++.++..+++... .+.++..+.+|+++++++++++++    
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999998888777776532 355688899999999998877664    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....+..+.+.++|++.+++|+.+++.++++++|.|.+++.   ++||++||..+..
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  150 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGR---GSIVNIASTHAFK  150 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC---eEEEEECChhhcc
Confidence            578999999999876666677889999999999999999999999999987654   3999999987654

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.94  E-value=2e-25  Score=170.87  Aligned_cols=141  Identities=35%  Similarity=0.507  Sum_probs=123.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||+++|++|+++|++|++++|+++.+++..+++.. .+.++..+.+|++|.+++++++++    ++
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA-EGFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            6799999999999999999999999999999999999888877766643 255788899999999999887655    47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||....+++.+.+.++|+..+++|+.+++.+++.++|.|.+++.  .++||++||.++..
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~--~g~iv~isS~~~~~  148 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGT--GGHVVFTASFAGLV  148 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--CCEEEEeCChhhcc
Confidence            8999999999887788888999999999999999999999999999977642  24999999987754

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.94  E-value=4.1e-26  Score=164.49  Aligned_cols=138  Identities=28%  Similarity=0.446  Sum_probs=121.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++||++++||+.||||++++++|+++|.++.+++.+.|..+...+--...+...+.++++|+++..++++.+++    +
T Consensus         2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f   81 (261)
T KOG4169|consen    2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF   81 (261)
T ss_pred             cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999998888766554433334578899999999999998888776    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |.+|++||+||..        ++++|++++.+|+.|.++-++.++|+|.+++.|.++-|||+||++|.-|
T Consensus        82 g~iDIlINgAGi~--------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P  143 (261)
T KOG4169|consen   82 GTIDILINGAGIL--------DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDP  143 (261)
T ss_pred             CceEEEEcccccc--------cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCc
Confidence            8999999999974        4577999999999999999999999999999888899999999998754

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.94  E-value=3.4e-25  Score=169.47  Aligned_cols=138  Identities=18%  Similarity=0.303  Sum_probs=111.9

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++||||+  +|||+++|++|+++|++|++++|+++. ++..+++....+.. ..+.+|++|.+++++++++   
T Consensus         2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~   79 (274)
T PRK08415          2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL-KKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKK   79 (274)
T ss_pred             ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH-HHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence            3579999999997  899999999999999999999998542 22233332222333 5689999999998887755   


Q ss_pred             -hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||...+    .++.+.+.++|++.+++|+.+++++++.++|.|+++  +   +|+++||.++..
T Consensus        80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~--g---~Iv~isS~~~~~  149 (274)
T PRK08415         80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG--A---SVLTLSYLGGVK  149 (274)
T ss_pred             HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC--C---cEEEEecCCCcc
Confidence             5899999999997642    467788999999999999999999999999999642  3   899999987753

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.94  E-value=5.8e-25  Score=166.12  Aligned_cols=140  Identities=21%  Similarity=0.290  Sum_probs=117.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|++.  ++..+++. ..+.++..+.+|+++++++++++++    +
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVE-ALGRKFHFITADLIQQKDIDSIVSQAVEVM   81 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999988643  22233332 2356788899999999999888765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++++++|+.+++.+++.+.|.|.+++.  .++||++||.++..
T Consensus        82 g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~--~g~ii~isS~~~~~  148 (251)
T PRK12481         82 GHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGN--GGKIINIASMLSFQ  148 (251)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCC--CCEEEEeCChhhcC
Confidence            78999999999887778888999999999999999999999999999976542  24999999987754

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.94  E-value=4.3e-25  Score=171.88  Aligned_cols=143  Identities=27%  Similarity=0.408  Sum_probs=120.9

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh-
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      ...++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++.... +.++.++.+|+++.+++++++++ 
T Consensus         8 ~~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~   87 (313)
T PRK05854          8 TVPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQL   87 (313)
T ss_pred             cCcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence            3446789999999999999999999999999999999999988887777775433 45688899999999999887765 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                         .+++|++|||||.... +..+.+.++++..+++|+.|++.+++.++|.|++. .   ++||++||.++..
T Consensus        88 ~~~~~~iD~li~nAG~~~~-~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~---~riv~vsS~~~~~  155 (313)
T PRK05854         88 RAEGRPIHLLINNAGVMTP-PERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-R---ARVTSQSSIAARR  155 (313)
T ss_pred             HHhCCCccEEEECCccccC-CccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-C---CCeEEEechhhcC
Confidence               4789999999998654 33356788999999999999999999999999764 2   3899999987643

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.94  E-value=5.8e-25  Score=169.15  Aligned_cols=143  Identities=29%  Similarity=0.360  Sum_probs=120.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh---------hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG---------EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~---------~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      +++|+++||||++|||+++|++|+++|++|++++++.         +..++..+++.. .+.++..+.+|++|.++++++
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVA-AGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHh-cCCceEEEeCCCCCHHHHHHH
Confidence            5799999999999999999999999999999998875         556666665543 355678889999999998877


Q ss_pred             HHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC---CCcEEEEecccCccc
Q 030328          106 LDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG---GPASIALMSSQAGQV  178 (179)
Q Consensus       106 ~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~~~~iv~iss~~g~~  178 (179)
                      +++    ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|+++...   ..++||++||.++..
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~  162 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ  162 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence            654    5899999999998877778889999999999999999999999999999765321   135899999988754

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.94  E-value=7.3e-25  Score=165.70  Aligned_cols=142  Identities=24%  Similarity=0.379  Sum_probs=121.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      +++++|+++|||+++|||+++|++|+++|++|++++|+.+ ..++..+++.. .+.++..+.+|+++++++++++++   
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~   82 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEA-AGRRAIQIAADVTSKADLRAAVARTEA   82 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999764 34555555543 255678889999999998887655   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||.....++.+.+.++|++++++|+.+++.+++.++|.|++++.+   +|+++||.++..
T Consensus        83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~isS~~~~~  150 (254)
T PRK06114         83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGG---SIVNIASMSGII  150 (254)
T ss_pred             HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCc---EEEEECchhhcC
Confidence             5789999999998877778888999999999999999999999999999876544   999999987754

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.94  E-value=8.3e-25  Score=169.03  Aligned_cols=140  Identities=31%  Similarity=0.477  Sum_probs=121.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .++++|+++||||++|||+++|++|+++|++|++++|+++++++..+++..  +.++..+.+|++|.+++++++++    
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--DDRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999888777666532  34566778999999999887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....++.+.++++|++.+++|+.+++++++.++|.|.++.    ++||++||.++..
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~----g~iv~isS~~~~~  148 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERR----GYVLQVSSLAAFA  148 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC----CEEEEEeCHhhcC
Confidence            47899999999998878888899999999999999999999999999997743    3899999987754

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.1e-24  Score=170.86  Aligned_cols=141  Identities=38%  Similarity=0.480  Sum_probs=124.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|+++.+++..+++.. .+.++..+.+|++|.+++++++++    +
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~-~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA-AGGEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-cCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            46789999999999999999999999999999999999888877777653 366788899999999999887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.+.+++++.+++|+.+++++++.++|.|++++.+   +||++||..+..
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g---~iV~isS~~~~~  149 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRG---AIIQVGSALAYR  149 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEeCChhhcc
Confidence            789999999998777788889999999999999999999999999999886544   999999988754

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=165.31  Aligned_cols=143  Identities=35%  Similarity=0.440  Sum_probs=120.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHH---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALD---  107 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~---  107 (179)
                      ..+.+|+++|||+++|||+++|++|++.|++|++++|+++..++..+++....  +.++..+.+|+++.++++++++   
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~   83 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV   83 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999888887765422  4568899999999888776653   


Q ss_pred             -h-hCCCcEEEecCCCCCCC-CcccCCHHHHHHHHHhhhhH-HHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          108 -E-AGPVDVLVVNQGVFVPG-ELEVQSLDEVRLMIDVNIIG-SFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       108 -~-~~~id~li~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~-~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       + +|++|+||||||..... ++.+.++|+|++++++|+.| .+.+.+.+.|++++.+++   .|+++||.++..
T Consensus        84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg---~I~~~ss~~~~~  155 (270)
T KOG0725|consen   84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGG---SIVNISSVAGVG  155 (270)
T ss_pred             HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCc---eEEEEecccccc
Confidence             4 58999999999988755 68899999999999999995 666677777777665554   999999987763

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.1e-24  Score=164.59  Aligned_cols=141  Identities=28%  Similarity=0.416  Sum_probs=122.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++... +.++..+.+|+++++++++++++    +
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-GGKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            367999999999999999999999999999999999988888777766543 45678899999999998887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||.....++.+.+.++|++.+++|+.+++.+++++.|.|.+++.  .++|+++||.++.
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~  150 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQ--GGVIINTASMSGH  150 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC--CcEEEEECcHHhc
Confidence            79999999999887777888899999999999999999999999999977543  2389999998764

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.93  E-value=6.4e-25  Score=166.02  Aligned_cols=137  Identities=19%  Similarity=0.232  Sum_probs=113.3

Q ss_pred             cCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           33 IPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ..+++|+++||||+  +|||+++|++|+++|++|++++|+. +.++..+++.   +.++..+.+|++|++++++++++  
T Consensus         3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~   78 (252)
T PRK06079          3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV---DEEDLLVECDVASDESIERAFATIK   78 (252)
T ss_pred             cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHH
Confidence            44689999999999  7999999999999999999999984 3333333332   34577889999999999887654  


Q ss_pred             --hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|++|||||...+    .++.+.+.++|+..+++|+.+++.+++.++|.|.+  +   ++|+++||.++..
T Consensus        79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~--~---g~Iv~iss~~~~~  149 (252)
T PRK06079         79 ERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP--G---ASIVTLTYFGSER  149 (252)
T ss_pred             HHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc--C---ceEEEEeccCccc
Confidence              5899999999997653    56778899999999999999999999999999853  2   3899999987754

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.93  E-value=2e-24  Score=160.96  Aligned_cols=141  Identities=18%  Similarity=0.198  Sum_probs=120.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++... +.++..+.+|+++++++++++++    +
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL-TDNVYSFQLKDFSQESIRHLFDAIEQQF   80 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-CCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999998888877776543 55677889999999999887654    4


Q ss_pred             C-CCcEEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 G-PVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~-~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      + ++|++|||||.. .+.++.+.+.++|++.+++|..+++.+++.++|+|.++++  .+.||++||..+.
T Consensus        81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~--~g~Iv~isS~~~~  148 (227)
T PRK08862         81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNK--KGVIVNVISHDDH  148 (227)
T ss_pred             CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CceEEEEecCCCC
Confidence            6 899999999854 3457788899999999999999999999999999987542  2499999997654

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.5e-24  Score=163.83  Aligned_cols=140  Identities=31%  Similarity=0.410  Sum_probs=121.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|++++.++..+++.. .+.++..+.+|+++++++++++++    +
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA-EGGEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999888877776653 355788899999999998877654    5


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||... ..++.+.++++|++.+++|+.+++.+++.++|.|++++.+   +|+++||.++.
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~---~iv~~sS~~~~  147 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGG---SLIFTSTFVGH  147 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---eEEEEechHhh
Confidence            78999999999764 3567788999999999999999999999999999876544   89999998764

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=6.2e-25  Score=169.63  Aligned_cols=140  Identities=32%  Similarity=0.508  Sum_probs=123.6

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHh-hcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL-ATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ..+.++++++||||++|||.++|++|+++|++|++.+|+.++.++..+++.. ....++.++.+|+++.+++.++.++  
T Consensus        30 ~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~  109 (314)
T KOG1208|consen   30 GIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK  109 (314)
T ss_pred             cccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999988888888875 3466788899999999999887665  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                        .+++|++|||||+..++.  ..+.|.++.++.+|..|++.+++.++|.|++...   .|||++||..+
T Consensus       110 ~~~~~ldvLInNAGV~~~~~--~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~---~RIV~vsS~~~  174 (314)
T KOG1208|consen  110 KKEGPLDVLINNAGVMAPPF--SLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP---SRIVNVSSILG  174 (314)
T ss_pred             hcCCCccEEEeCcccccCCc--ccCccchhheehhhhHHHHHHHHHHHHHHhhCCC---CCEEEEcCccc
Confidence              468999999999987655  5677899999999999999999999999987653   59999999875

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.8e-24  Score=165.10  Aligned_cols=137  Identities=34%  Similarity=0.432  Sum_probs=119.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++++++||||+||||++++++|+++|++|++++|+++..++..+++.     ++..+.+|+++++++++++++    +
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG-----LVVGGPLDVTDPASFAAFLDAVEADL   76 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----cceEEEccCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999999999999999999999999887766555442     467789999999998877655    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.+.+++++++++|+.+++.+++.++|.|.+++.+   +|+++||.++..
T Consensus        77 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  142 (273)
T PRK07825         77 GPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRG---HVVNVASLAGKI  142 (273)
T ss_pred             CCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---EEEEEcCccccC
Confidence            789999999999887788888999999999999999999999999999887654   999999998764

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.93  E-value=1.8e-24  Score=164.11  Aligned_cols=143  Identities=17%  Similarity=0.232  Sum_probs=119.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ..+++|+++||||++|||+++|++|+++|++|++++| +++..++..+++....+.++..+.+|++|++++++++++   
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999998865 555666666666544466788999999999999887765   


Q ss_pred             -hCCCcEEEecCCCCC------CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFV------PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||...      ..++.+.+++++++.+++|+.+++.+++.++|.|++++.   ++||++||..+..
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  157 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGG---GSIISLSSTGNLV  157 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCC---EEEEEEecccccc
Confidence             478999999998642      245667888999999999999999999999999987654   3999999987643

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.93  E-value=2.6e-24  Score=166.87  Aligned_cols=141  Identities=23%  Similarity=0.316  Sum_probs=115.5

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh----------hHHHHHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG----------EKLEEAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~----------~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+.          +..++..+++.. .+.++..+.+|++++++
T Consensus         3 ~~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dv~~~~~   81 (305)
T PRK08303          3 MKPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTA-AGGRGIAVQVDHLVPEQ   81 (305)
T ss_pred             CcCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHh-cCCceEEEEcCCCCHHH
Confidence            3457899999999999999999999999999999999974          344455455533 35567789999999999


Q ss_pred             HHHHHHh----hCCCcEEEecC-CCCC----CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          102 VKTALDE----AGPVDVLVVNQ-GVFV----PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       102 v~~~~~~----~~~id~li~~a-g~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      +++++++    ++++|++|||| |...    ..++.+.+.++|++.+++|+.+++.++++++|.|++++.|   +||++|
T Consensus        82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g---~IV~is  158 (305)
T PRK08303         82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGG---LVVEIT  158 (305)
T ss_pred             HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCc---EEEEEC
Confidence            9887765    58899999999 7431    2456678889999999999999999999999999765443   999999


Q ss_pred             ccCc
Q 030328          173 SQAG  176 (179)
Q Consensus       173 s~~g  176 (179)
                      |..+
T Consensus       159 S~~~  162 (305)
T PRK08303        159 DGTA  162 (305)
T ss_pred             Cccc
Confidence            9654

>PRK08589 short chain dehydrogenase; Validated

Probab=99.93  E-value=3.8e-24  Score=163.40  Aligned_cols=138  Identities=36%  Similarity=0.474  Sum_probs=118.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||+++|++|+++|++|++++|+ ++.++..+++.. .+.++..+.+|+++.+++++++++    ++
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS-NGGKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh-cCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            579999999999999999999999999999999999 666666666643 355688899999999998877654    57


Q ss_pred             CCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||... ..++.+.+.+.|++++++|+.+++.++++++|.|++++ +   +||++||.++..
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g---~iv~isS~~~~~  146 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-G---SIINTSSFSGQA  146 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-C---EEEEeCchhhcC
Confidence            8999999999864 35677788999999999999999999999999998653 3   999999987654

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.93  E-value=2e-24  Score=163.81  Aligned_cols=138  Identities=15%  Similarity=0.238  Sum_probs=112.9

Q ss_pred             cCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH
Q 030328           33 IPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        33 ~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      +++++|+++||||+  +|||+++|++|+++|++|++++|+.+   .+++..+++   .+.++..+.+|++|+++++++++
T Consensus         3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~   79 (257)
T PRK08594          3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL---EGQESLLLPCDVTSDEEITACFE   79 (257)
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc---CCCceEEEecCCCCHHHHHHHHH
Confidence            45689999999997  89999999999999999999987643   333333322   24567889999999999888765


Q ss_pred             h----hCCCcEEEecCCCCC----CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          108 E----AGPVDVLVVNQGVFV----PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       108 ~----~~~id~li~~ag~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +    ++++|++|||||...    ..++.+.+.++|+..+++|+.+++.+++.++|.|.+  +   ++||++||.++..
T Consensus        80 ~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~---g~Iv~isS~~~~~  153 (257)
T PRK08594         80 TIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE--G---GSIVTLTYLGGER  153 (257)
T ss_pred             HHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc--C---ceEEEEcccCCcc
Confidence            4    589999999999754    245677899999999999999999999999999954  2   3999999998764

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.93  E-value=2.9e-24  Score=164.13  Aligned_cols=137  Identities=16%  Similarity=0.220  Sum_probs=111.5

Q ss_pred             cCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|++|||||++  |||+++|++|+++|++|++++|+++..++ .+++....+. ...+++|++|.+++++++++    
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~~~~~~~   82 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAESLGS-DFVLPCDVEDIASVDAVFEALEKK   82 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHhcCC-ceEEeCCCCCHHHHHHHHHHHHHH
Confidence            6789999999996  99999999999999999999988644333 2333222232 34689999999999887765    


Q ss_pred             hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||....    .++.+.+.++|++.+++|+.+++.++|.++|.|++  +   ++||++||.++..
T Consensus        83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~--~---G~Iv~isS~~~~~  151 (271)
T PRK06505         83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD--G---GSMLTLTYGGSTR  151 (271)
T ss_pred             hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc--C---ceEEEEcCCCccc
Confidence            5899999999997653    45678899999999999999999999999999963  2   3899999987753

>PRK06194 hypothetical protein; Provisional

Probab=99.93  E-value=4.7e-24  Score=163.83  Aligned_cols=143  Identities=29%  Similarity=0.373  Sum_probs=122.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|++|||||+||||+++|++|+++|++|++++|+.+..++..+++... +.++..+.+|++|.++++++++.    ++
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-GAEVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999999999999988777766665432 55788899999999999887664    47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC---CCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG---GPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....++.+.+.++|+..+++|+.|++.+++.++|.|.++...   ..++||++||.++..
T Consensus        83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  153 (287)
T PRK06194         83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL  153 (287)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc
Confidence            89999999999887777788999999999999999999999999999876531   124899999987754

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.93  E-value=5.5e-24  Score=160.79  Aligned_cols=141  Identities=27%  Similarity=0.376  Sum_probs=121.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|++|||||+++||++++++|+++|++|++++|++++.++..+++... +.++..+.+|++++++++++++.    +
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE-GIKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999988877776666432 45677889999999998887654    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||+|.....++.+.+.++|++.+++|+.+++.+++.+.+.|.+++.   ++|+++||..+..
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~isS~~~~~  150 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQA---GKIINICSMQSEL  150 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEEccchhcc
Confidence            78999999999877677888899999999999999999999999999976644   3899999987643

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.92  E-value=8.9e-24  Score=164.01  Aligned_cols=150  Identities=21%  Similarity=0.267  Sum_probs=124.4

Q ss_pred             CCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHH
Q 030328           28 PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        28 ~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      +.++...+++|+++||||++|||+++|++|+++|++|++++++. +..++..+++.. .+.++..+.+|+++.+++++++
T Consensus         3 ~~~~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~-~g~~~~~~~~Dv~d~~~~~~~~   81 (306)
T PRK07792          3 RTTNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRA-AGAKAVAVAGDISQRATADELV   81 (306)
T ss_pred             cccCCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHH
Confidence            34566778999999999999999999999999999999998754 445555555543 3667888999999999988876


Q ss_pred             Hh---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC----CCcEEEEecccCccc
Q 030328          107 DE---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG----GPASIALMSSQAGQV  178 (179)
Q Consensus       107 ~~---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~----~~~~iv~iss~~g~~  178 (179)
                      ++   ++++|++|||||......+.+.+.++|+..+++|+.+++++++++.|+|+++.+.    ..++||++||.++..
T Consensus        82 ~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  160 (306)
T PRK07792         82 ATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV  160 (306)
T ss_pred             HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc
Confidence            54   5799999999998877777888999999999999999999999999999764211    125899999987754

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.92  E-value=6.2e-24  Score=161.13  Aligned_cols=139  Identities=17%  Similarity=0.210  Sum_probs=111.1

Q ss_pred             cCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           33 IPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      .++++|+++||||+  +|||+++|++|+++|++|++++|+++..+ ..+++....+ .+..+.+|++|.+++++++++  
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~-~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~   83 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARP-YVEPLAEELD-APIFLPLDVREPGQLEAVFARIA   83 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHH-HHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHH
Confidence            34689999999998  59999999999999999999999865322 2222322212 245688999999999887755  


Q ss_pred             --hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|++|||||....    .++.+.+.++|++++++|+.+++++++.++|.|++  +   ++|+++||.++..
T Consensus        84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~--~---g~Ii~iss~~~~~  154 (258)
T PRK07533         84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN--G---GSLLTMSYYGAEK  154 (258)
T ss_pred             HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc--C---CEEEEEecccccc
Confidence              4899999999997643    45677899999999999999999999999999953  2   3899999987643

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.92  E-value=4.2e-24  Score=151.66  Aligned_cols=134  Identities=38%  Similarity=0.599  Sum_probs=116.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC--hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-RVSILARS--GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~--~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      |+++||||++|||++++++|+++|+ +|++++|+  .+..++..+++. ..+.++.++.+|++++++++++++.    .+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK-APGAKITFIECDLSDPESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH-HTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999965 57888888  566777766666 3468899999999999999887765    47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|++|||+|....+++.+.+.++|++++++|+.+++.+.+.+.|    ++   .+.||++||.+|..|
T Consensus        80 ~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~----~~---~g~iv~~sS~~~~~~  141 (167)
T PF00106_consen   80 PLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP----QG---GGKIVNISSIAGVRG  141 (167)
T ss_dssp             SESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH----HT---TEEEEEEEEGGGTSS
T ss_pred             cccccccccccccccccccccchhhhhccccccceeeeeeehhee----cc---ccceEEecchhhccC
Confidence            999999999999888899999999999999999999999999999    22   349999999998764

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.92  E-value=5.6e-24  Score=161.59  Aligned_cols=138  Identities=20%  Similarity=0.261  Sum_probs=111.4

Q ss_pred             CcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++||||++  |||+++|++|+++|++|++++|++ ..++..+++....+.. ..+.+|++|++++++++++   
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~v~~~~~~~~~   82 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIGCN-FVSELDVTNPKSISNLFDDIKE   82 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcCCc-eEEEccCCCHHHHHHHHHHHHH
Confidence            36789999999997  999999999999999999998874 3333444443332332 4578999999999887754   


Q ss_pred             -hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||....    .++.+.+.++|++.+++|+.+++.+++.+.|.|++  +   ++||++||.++..
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~--~---G~Iv~isS~~~~~  152 (260)
T PRK06603         83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD--G---GSIVTLTYYGAEK  152 (260)
T ss_pred             HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc--C---ceEEEEecCcccc
Confidence             5899999999997542    45678899999999999999999999999999953  2   3899999987653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.92  E-value=8.3e-24  Score=159.91  Aligned_cols=140  Identities=33%  Similarity=0.461  Sum_probs=122.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+++||++++++|+++|++|++++|++++.++..+++.. .+.++..+.+|+++.+++++++++    +
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG-QGLSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-cCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999998877766666643 256788899999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||+|.....++.+.+.++|++.+++|+.+++.+++.+.+.|.+++.+   +||++||..+.
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~iss~~~~  150 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAG---KIINIASVQSA  150 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe---EEEEEccchhc
Confidence            789999999998877788888999999999999999999999999999876544   99999998654

>PLN02253 xanthoxin dehydrogenase

Probab=99.92  E-value=9.7e-24  Score=161.62  Aligned_cols=140  Identities=28%  Similarity=0.404  Sum_probs=118.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+++||++++++|+++|++|++++|+++..++..+++.  .+.++..+.+|++|.++++++++.    +
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG--GEPNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--CCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            4679999999999999999999999999999999998877666555542  235688899999999998877654    5


Q ss_pred             CCCcEEEecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||....  .++.+.+.++|+.++++|+.+++.+++++.|.|.+++.+   +|+++||.++..
T Consensus        93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g---~ii~isS~~~~~  160 (280)
T PLN02253         93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKG---SIVSLCSVASAI  160 (280)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc---eEEEecChhhcc
Confidence            789999999997643  356778999999999999999999999999999876544   899999987754

>PRK06398 aldose dehydrogenase; Validated

Probab=99.92  E-value=3.7e-24  Score=162.35  Aligned_cols=130  Identities=30%  Similarity=0.447  Sum_probs=113.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|+++..            ..+..+.+|+++++++++++++    +
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~------------~~~~~~~~D~~~~~~i~~~~~~~~~~~   70 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY------------NDVDYFKVDVSNKEQVIKGIDYVISKY   70 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc------------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999999999999986431            2467889999999998887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.+.++|++.+++|+.+++.++++++|.|.+++.+   +||++||.++..
T Consensus        71 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  136 (258)
T PRK06398         71 GRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKG---VIINIASVQSFA  136 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe---EEEEeCcchhcc
Confidence            789999999998777788889999999999999999999999999999876543   999999987653

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.1e-23  Score=160.04  Aligned_cols=135  Identities=25%  Similarity=0.369  Sum_probs=114.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||++++++|+++|++|++++|++++.++..+++    +.++..+.+|+++.+++++++++    ++
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL----GERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999987766655443    45678899999999998877655    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||....... +.+.++|++.+++|+.+++.+++.+.|.|+ ++.   ++||++||.++..
T Consensus        80 ~id~lv~~ag~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~---g~ii~isS~~~~~  142 (261)
T PRK08265         80 RVDILVNLACTYLDDGL-ASSRADWLAALDVNLVSAAMLAQAAHPHLA-RGG---GAIVNFTSISAKF  142 (261)
T ss_pred             CCCEEEECCCCCCCCcC-cCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cCC---cEEEEECchhhcc
Confidence            89999999997654433 568899999999999999999999999997 333   3999999987754

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.92  E-value=1.5e-23  Score=159.41  Aligned_cols=142  Identities=30%  Similarity=0.462  Sum_probs=123.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++.+|+++|||++++||++++++|+++|++|++++|++++.++..+++.. .+.++..+++|+++.+++++++++    
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE-LGIEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999999999999999998887776666543 355788899999999999887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .+++|++|||||.....++.+.+++++++++++|+.+++.+++.++|.|++++.+   +|+++||..+..
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  151 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHG---KIINICSMMSEL  151 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCc---EEEEEcCccccC
Confidence            4789999999998877788888999999999999999999999999999876543   999999987654

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.6e-23  Score=161.68  Aligned_cols=142  Identities=27%  Similarity=0.414  Sum_probs=119.8

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ....+.+|+++||||+||||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|.++++++++.  
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~  112 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR-AGGDAMAVPCDLSDLDAVDALVADVE  112 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            34456789999999999999999999999999999999999888777766643 255678899999999999888764  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccC--CHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQ--SLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                        ++++|++|||||.....++.+.  +.++++..+++|+.|++.++++++|.|++++.+   +||++||.++
T Consensus       113 ~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~  181 (293)
T PRK05866        113 KRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDG---HIINVATWGV  181 (293)
T ss_pred             HHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---EEEEECChhh
Confidence              5789999999998776655442  467889999999999999999999999876544   9999999654

>PRK09242 tropinone reductase; Provisional

Probab=99.92  E-value=1.7e-23  Score=158.38  Aligned_cols=142  Identities=30%  Similarity=0.396  Sum_probs=123.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||+++||++++++|+++|++|++++|+.+..++..+++... .+.++..+.+|+++++++++++++    
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH   85 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999988877776666543 256788899999999998777654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++||++|.....+..+.+.+++++.+++|+.+++.+++++.|.|++++.+   +|+++||.++..
T Consensus        86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~ii~~sS~~~~~  152 (257)
T PRK09242         86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASS---AIVNIGSVSGLT  152 (257)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc---eEEEECccccCC
Confidence            5789999999998766677788999999999999999999999999999876543   899999987754

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.92  E-value=5.8e-24  Score=161.34  Aligned_cols=139  Identities=20%  Similarity=0.285  Sum_probs=112.4

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .+++|+++||||+  +|||+++|++|+++|++|++++++.+  +.++..+++... +..+..+.+|++|++++++++++ 
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~   81 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP-LNPSLFLPCDVQDDAQIEETFETI   81 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc-cCcceEeecCcCCHHHHHHHHHHH
Confidence            3679999999986  89999999999999999998876543  233344444332 23466789999999999887755 


Q ss_pred             ---hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ---AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                         ++++|++|||||....    .++.+.+.++|++++++|+.+++.+++.++|.|++.  +   +|+++||..+..
T Consensus        82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~--g---~Iv~isS~~~~~  153 (258)
T PRK07370         82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG--G---SIVTLTYLGGVR  153 (258)
T ss_pred             HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC--C---eEEEEecccccc
Confidence               4799999999997642    567788999999999999999999999999999642  3   899999987753

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.92  E-value=4.1e-24  Score=165.15  Aligned_cols=140  Identities=19%  Similarity=0.236  Sum_probs=110.9

Q ss_pred             cCcCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh--------c-Cc---eEEEEEeeC--
Q 030328           33 IPIKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--------T-GI---EVATYSADV--   96 (179)
Q Consensus        33 ~~~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------~-~~---~v~~~~~D~--   96 (179)
                      ++++||++|||||  ++|||+++|+.|++.|++|++ +|+.+++++...++...        . +.   ....+.+|+  
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   83 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF   83 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence            4579999999999  899999999999999999998 77777777666555321        1 11   145678888  


Q ss_pred             CC------------------HHHHHHHHH----hhCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328           97 RD------------------FDAVKTALD----EAGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus        97 ~~------------------~~~v~~~~~----~~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                      ++                  +++++++++    +++++|+||||||...  ..++.+.+.++|++++++|+.+++.++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~  163 (303)
T PLN02730         84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH  163 (303)
T ss_pred             CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence            32                  336666554    3689999999997543  36788899999999999999999999999


Q ss_pred             HcHHHHhccCCCCcEEEEecccCccc
Q 030328          153 ALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       153 ~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|.|+++  |   +||++||.++..
T Consensus       164 ~~p~m~~~--G---~II~isS~a~~~  184 (303)
T PLN02730        164 FGPIMNPG--G---ASISLTYIASER  184 (303)
T ss_pred             HHHHHhcC--C---EEEEEechhhcC
Confidence            99999653  3   999999987754

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.5e-23  Score=158.28  Aligned_cols=139  Identities=32%  Similarity=0.360  Sum_probs=118.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +|+++||||++|||++++++|+++|++|++++|+.++.++..+++... +.++..+.+|+++++++++++++    ++++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF-PGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            589999999999999999999999999999999988777766665432 45688899999999999887765    4789


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||+|.....++.+.+.++|++++++|+.+++.++++++|.|.++..  .++|+++||..+..
T Consensus        80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~g~ii~isS~~~~~  143 (252)
T PRK07677         80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGI--KGNIINMVATYAWD  143 (252)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC--CEEEEEEcChhhcc
Confidence            99999999765567778899999999999999999999999999876432  24899999987753

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.1e-23  Score=159.47  Aligned_cols=138  Identities=34%  Similarity=0.503  Sum_probs=115.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +|+++||||++|||++++++|+++|++|++++|+.+..++..+++... + ++..+.+|+++++++++++++    .+++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i   79 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA-A-RVSVYAADVRDADALAAAAADFIAAHGLP   79 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC-C-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999999999999988777665555321 2 788899999999999877654    4789


Q ss_pred             cEEEecCCCCCCCCcc-cCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFVPGELE-VQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|||+|........ +.+.++++.++++|+.|++.+++.++|.|++++.+   +||++||.++..|
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~---~iv~isS~~~~~~  144 (257)
T PRK07024         80 DVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRG---TLVGIASVAGVRG  144 (257)
T ss_pred             CEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCC---EEEEEechhhcCC
Confidence            9999999976544333 36889999999999999999999999999876544   9999999887643

>PRK05599 hypothetical protein; Provisional

Probab=99.92  E-value=1.1e-23  Score=158.77  Aligned_cols=139  Identities=22%  Similarity=0.294  Sum_probs=116.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      |+++||||++|||+++|++|+ +|++|++++|+++++++..+++....+..+..+.+|++|++++++++++    ++++|
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   79 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS   79 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence            579999999999999999999 5999999999999888888777654333577889999999999887655    47899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|||||.....+..+.+.+.+.+.+++|+.+++.+++.+.|.|.+++.  .++||++||.+|..+
T Consensus        80 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~--~g~Iv~isS~~~~~~  143 (246)
T PRK05599         80 LAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTA--PAAIVAFSSIAGWRA  143 (246)
T ss_pred             EEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--CCEEEEEeccccccC
Confidence            9999999876655666777888899999999999999999999976532  239999999988653

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.92  E-value=2.5e-23  Score=157.32  Aligned_cols=143  Identities=26%  Similarity=0.414  Sum_probs=124.1

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      +..+++|+++||||+++||++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|+++++++.+++++   
T Consensus         6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (256)
T PRK06124          6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA-AGGAAEALAFDIADEEAVAAAFARIDA   84 (256)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3447899999999999999999999999999999999998877777666643 355688899999999998877764   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||+|.....++.+.+.++|++.+++|+.+++.+.+.++|.|.+.+.+   ++|++||..+..
T Consensus        85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~~ss~~~~~  152 (256)
T PRK06124         85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYG---RIIAITSIAGQV  152 (256)
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEEeechhcc
Confidence             4789999999998777778888999999999999999999999999999776544   899999987654

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.92  E-value=1.7e-23  Score=158.58  Aligned_cols=141  Identities=23%  Similarity=0.387  Sum_probs=119.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ..+++|+++||||+++||++++++|+++|++|++++|+ ++.++..+.+.. .+.++..+.+|+++.+++++++++    
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~~   88 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEK-EGRKVTFVQVDLTKPESAEKVVKEALEE   88 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999998 444555444432 345688899999999998887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||+|.....++.+.+.++|++.+++|+.+++.++++++|.|++++.+   +|+++||..+..
T Consensus        89 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  155 (258)
T PRK06935         89 FGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSG---KIINIASMLSFQ  155 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCe---EEEEECCHHhcc
Confidence            4789999999998777777788899999999999999999999999999876544   899999987653

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=6.8e-24  Score=150.90  Aligned_cols=138  Identities=31%  Similarity=0.420  Sum_probs=116.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~  109 (179)
                      +..|-++||||+++|||+++|++|.+.|-+|+++.|+++++++..++.     .......||+.|.++.+++++    .+
T Consensus         2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~-----p~~~t~v~Dv~d~~~~~~lvewLkk~~   76 (245)
T COG3967           2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAEN-----PEIHTEVCDVADRDSRRELVEWLKKEY   76 (245)
T ss_pred             cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcC-----cchheeeecccchhhHHHHHHHHHhhC
Confidence            467889999999999999999999999999999999999988877754     345667899999988776654    46


Q ss_pred             CCCcEEEecCCCCCCCCcc--cCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELE--VQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ..++++|||||...+-.+.  +...++.+..+++|+.+|+++++.++|++.+++..   .||++||-.++.|
T Consensus        77 P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a---~IInVSSGLafvP  145 (245)
T COG3967          77 PNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEA---TIINVSSGLAFVP  145 (245)
T ss_pred             CchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---eEEEeccccccCc
Confidence            7899999999998765543  34556678899999999999999999999988765   9999999877654

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.92  E-value=1.6e-23  Score=159.23  Aligned_cols=138  Identities=19%  Similarity=0.276  Sum_probs=109.9

Q ss_pred             cCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||  ++|||+++|++|+++|++|++++|+++ .++..+++....+ ....+++|++|++++++++++    
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK-LEERVRKMAAELD-SELVFRCDVASDDEINQVFADLGKH   81 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH-HHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHHHH
Confidence            67999999996  679999999999999999999887643 3333444433223 245689999999999887654    


Q ss_pred             hCCCcEEEecCCCCCCC----C-cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPG----E-LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~----~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....    + +++.+.++|+..+++|+.+++++++.+.|.|++++    ++|+++||.++..
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~----g~Iv~iss~~~~~  152 (261)
T PRK08690         82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRN----SAIVALSYLGAVR  152 (261)
T ss_pred             hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcC----cEEEEEccccccc
Confidence            58999999999986532    2 35678899999999999999999999999986542    3899999987753

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.3e-23  Score=160.96  Aligned_cols=133  Identities=26%  Similarity=0.400  Sum_probs=115.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-----C
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-----G  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-----~  110 (179)
                      .+|+++||||+||||++++++|+++|++|++++|+++..++..+       ..+..+.+|++|.+++++++++.     +
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g   75 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA-------EGLEAFQLDYAEPESIAALVAQVLELSGG   75 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999999876654322       13567899999999988877653     6


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||....+++.+.+.++++.++++|+.|++.+++.++|.|.+.+.+   +||++||.+|..
T Consensus        76 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g---~iv~isS~~~~~  140 (277)
T PRK05993         76 RLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQG---RIVQCSSILGLV  140 (277)
T ss_pred             CccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC---EEEEECChhhcC
Confidence            89999999998888888889999999999999999999999999999876544   899999988754

>PRK05717 oxidoreductase; Validated

Probab=99.92  E-value=2.7e-23  Score=157.13  Aligned_cols=139  Identities=25%  Similarity=0.353  Sum_probs=115.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      +..+++|+++||||+|+||+++|++|+++|++|++++|++++.++..+++    +.++.++.+|+++.+++++++++   
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL----GENAWFIAMDVADEAQVAAGVAEVLG   80 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999877655543332    44677899999999998766544   


Q ss_pred             -hCCCcEEEecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||...+  .++.+.+.++|+..+++|+.+++.+++++.|.|.+..    ++|+++||.++..
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~----g~ii~~sS~~~~~  149 (255)
T PRK05717         81 QFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHN----GAIVNLASTRARQ  149 (255)
T ss_pred             HhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC----cEEEEEcchhhcC
Confidence             5789999999997643  4667789999999999999999999999999997643    3899999987754

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3.6e-23  Score=156.21  Aligned_cols=142  Identities=30%  Similarity=0.402  Sum_probs=121.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+++|+++||||+|+||.+++++|+++|++|++++|++++.++..+++.. .+.++..+.+|+++.+++++++++    
T Consensus         3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~~   81 (253)
T PRK06172          3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE-AGGEALFVACDVTRDAEVKALVEQTIAA   81 (253)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346799999999999999999999999999999999998887777666643 356788899999999998887654    


Q ss_pred             hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||+|.... .++.+.+.+++++.+++|+.+++.++++++|.|.+++.+   +++++||..+..
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~ii~~sS~~~~~  149 (253)
T PRK06172         82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGG---AIVNTASVAGLG  149 (253)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---EEEEECchhhcc
Confidence            4789999999997654 346778999999999999999999999999999876544   899999987654

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.92  E-value=3.5e-23  Score=156.77  Aligned_cols=140  Identities=25%  Similarity=0.339  Sum_probs=120.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcC-ceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG-IEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      +|+++||||+++||++++++|+++|++|++++|+.+..++..+++....+ .++..+.+|+++.+++.+++++    +++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999998877766666544333 4688899999999998877655    478


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.....++.+.+.++|+..+++|+.+++.++|.+.|.|++++.  .++|+++||.++..
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~--~~~iv~~ss~~~~~  146 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGI--QGRIIQINSKSGKV  146 (259)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC--CcEEEEecCccccc
Confidence            999999999888778888999999999999999999999999999987641  23999999977654

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.92  E-value=2.6e-23  Score=157.61  Aligned_cols=135  Identities=32%  Similarity=0.386  Sum_probs=118.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-----hCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-----AGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-----~~~i  112 (179)
                      |+++||||+|+||++++++|+++|++|++++|+.+..++..+++.   +.++.++.+|+++.++++++++.     .+++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            789999999999999999999999999999999887776655443   45788899999999999887664     4689


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||||.....++.+.+.++++.++++|+.+++.+++++.+.|++++.+   +|+++||..+..
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~isS~~~~~  141 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGA---RVINTSSASAIY  141 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC---EEEEeCchhhCc
Confidence            999999998887788888999999999999999999999999999876554   999999987654

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3.3e-23  Score=156.06  Aligned_cols=140  Identities=31%  Similarity=0.403  Sum_probs=121.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+|+||.+++++|+++|++|++++|+.+..++..+++.  .+.++..+.+|++|++++++++++    .
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~i~~~~   79 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA--AGGRAFARQGDVGSAEAVEALVDFVAARW   79 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999999887766665554  356688899999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||+|.....++.+.+.++++..+++|+.+++.+++.++|.|++.+.   ++|+++||..+..
T Consensus        80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~ii~~sS~~~~~  145 (252)
T PRK06138         80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGG---GSIVNTASQLALA  145 (252)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCC---eEEEEECChhhcc
Confidence            78999999999877777778899999999999999999999999999987654   3999999986643

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3.6e-23  Score=157.17  Aligned_cols=141  Identities=29%  Similarity=0.441  Sum_probs=121.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---hC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---AG  110 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~~  110 (179)
                      .+++++++||||+|+||.+++++|+++|++|++++|+++..++...++  ..+.++.++.+|++|.++++++++.   .+
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL--PYPGRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999988777766665  2355788899999999998887665   47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|++|||||.....++.+.+.+++++++++|+.|++.+++.+.|.|.+++.+   .++++||..+..|
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~---~iv~isS~~~~~~  145 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSA---MVVNVGSTFGSIG  145 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC---EEEEecChhhCcC
Confidence            89999999998777778888999999999999999999999999999876544   8999999876543

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=157.17  Aligned_cols=141  Identities=30%  Similarity=0.376  Sum_probs=119.9

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ...+..+|.|+|||+.+|.|+.+|++|.++|++|+...-+++..+....+..   ..+......|++++++++++.+.  
T Consensus        23 ~~~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~---s~rl~t~~LDVT~~esi~~a~~~V~   99 (322)
T KOG1610|consen   23 VLDSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK---SPRLRTLQLDVTKPESVKEAAQWVK   99 (322)
T ss_pred             cccccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc---CCcceeEeeccCCHHHHHHHHHHHH
Confidence            3445789999999999999999999999999999998887777666555542   56677789999999999876543  


Q ss_pred             -h---CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -A---GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~---~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       .   .++..||||||+.. .++.+..+.+++.+++++|..|++.++++++|.+++.++    |||++||.+|..
T Consensus       100 ~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arG----RvVnvsS~~GR~  170 (322)
T KOG1610|consen  100 KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARG----RVVNVSSVLGRV  170 (322)
T ss_pred             HhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccC----eEEEecccccCc
Confidence             1   35899999999664 578888999999999999999999999999999987654    999999999864

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.92  E-value=3e-23  Score=156.86  Aligned_cols=140  Identities=21%  Similarity=0.300  Sum_probs=116.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++|||+++|||+++|++|+++|++|++++++..  ++..+++.. .+.++..+.+|++|.+++++++++    .
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTA-LGRRFLSLTADLRKIDGIPALLERAVAEF   83 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999998887543  233334432 255678899999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++.+++.+.|.|.+++.  .++|+++||.++..
T Consensus        84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~g~iv~isS~~~~~  150 (253)
T PRK08993         84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGN--GGKIINIASMLSFQ  150 (253)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC--CeEEEEECchhhcc
Confidence            78999999999877777788899999999999999999999999999977532  24899999987654

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.92  E-value=2.7e-23  Score=156.88  Aligned_cols=138  Identities=28%  Similarity=0.396  Sum_probs=114.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-----
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-----  108 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-----  108 (179)
                      +++|+++||||++|||+++|++|+++|++|++++ ++++..++...++.. .+.++..+.+|+++.+++++++++     
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS-NGGSAFSIGANLESLHGVEALYSSLDNEL   80 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHh-cCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999998875 566666666555543 355677889999999888766543     


Q ss_pred             ---hC--CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ---AG--PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ---~~--~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                         .+  ++|++|||||.....++.+.++++|++++++|+.+++.+++.++|.|++.     ++||++||.++..
T Consensus        81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-----g~iv~isS~~~~~  150 (252)
T PRK12747         81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-----SRIINISSAATRI  150 (252)
T ss_pred             hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-----CeEEEECCccccc
Confidence               13  79999999998766677888999999999999999999999999999653     3999999998754

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.92  E-value=3.4e-23  Score=161.30  Aligned_cols=140  Identities=27%  Similarity=0.391  Sum_probs=116.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      .+|+++||||++|||+++|++|+++| ++|++++|++++.++..+++.. .+..+..+.+|+++.+++++++++    .+
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   80 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM-PKDSYTIMHLDLGSLDSVRQFVQQFRESGR   80 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999 9999999998877776666532 245677889999999999887765    47


Q ss_pred             CCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|++|||||...+ .+..+.++++|+.++++|+.+++.+++.++|.|++++. +.++||++||.++.
T Consensus        81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~-~~g~IV~vsS~~~~  147 (314)
T TIGR01289        81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPN-KDKRLIIVGSITGN  147 (314)
T ss_pred             CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCC-CCCeEEEEecCccc
Confidence            89999999997543 23345688999999999999999999999999987532 13499999998764

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.92  E-value=4.7e-23  Score=155.84  Aligned_cols=138  Identities=28%  Similarity=0.404  Sum_probs=118.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +.+|+++||||+++||+++|++|+++|++|++++|++++.++..+++.. .+.++..+.+|+++.+++++++++    ++
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD-LGRRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-hCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999999998877776666543 245678899999999998877654    47


Q ss_pred             CCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|++|||||...+ .++.+.+.+++++++++|+.+++.+++++.+.|.+.+    ++|+++||..+.
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~----~~ii~~sS~~~~  145 (258)
T PRK07890         82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG----GSIVMINSMVLR  145 (258)
T ss_pred             CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC----CEEEEEechhhc
Confidence            89999999997654 5677788999999999999999999999999987654    299999998764

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.91  E-value=4.6e-23  Score=157.74  Aligned_cols=142  Identities=28%  Similarity=0.397  Sum_probs=120.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ..+++|+++||||+++||++++++|+++|++|++++|+.+..++..+++.. .+.++..+.+|+++++++++++++    
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA-AGGEALAVKADVLDKESLEQARQQILED   84 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999998877777666643 355788899999999998877654    


Q ss_pred             hCCCcEEEecCCCCCC---------------CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecc
Q 030328          109 AGPVDVLVVNQGVFVP---------------GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSS  173 (179)
Q Consensus       109 ~~~id~li~~ag~~~~---------------~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss  173 (179)
                      ++++|++|||||...+               .++.+.+.++|++.+++|+.+++.+++.++|.|.+++.+   +||++||
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~ii~isS  161 (278)
T PRK08277         85 FGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGG---NIINISS  161 (278)
T ss_pred             cCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc---EEEEEcc
Confidence            5789999999996543               245678899999999999999999999999999876544   9999999


Q ss_pred             cCccc
Q 030328          174 QAGQV  178 (179)
Q Consensus       174 ~~g~~  178 (179)
                      .++..
T Consensus       162 ~~~~~  166 (278)
T PRK08277        162 MNAFT  166 (278)
T ss_pred             chhcC
Confidence            87754

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.91  E-value=5.3e-23  Score=156.47  Aligned_cols=141  Identities=35%  Similarity=0.575  Sum_probs=119.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+++|+++||||+++||.+++++|+++|++|++++|+.++.++..+++... +.++.++.+|+++++++++++++    
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-GPEGLGVSADVRDYAAVEAAFAQIADE   83 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999988776665555432 44567889999999999887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++++.|.|++++ +   +|+++||.++..
T Consensus        84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~-g---~iv~iss~~~~~  149 (264)
T PRK07576         84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPG-A---SIIQISAPQAFV  149 (264)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-C---EEEEECChhhcc
Confidence            47899999999876666777889999999999999999999999999987543 3   899999987643

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=3e-23  Score=156.91  Aligned_cols=136  Identities=35%  Similarity=0.474  Sum_probs=113.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+++|+++||||++|||+++|++|+++|++|++++++.++..   +++..   ..+..+.+|++|++++++++++    
T Consensus         3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~---~~l~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   76 (255)
T PRK06463          3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEA---KELRE---KGVFTIKCDVGNRDQVKKSKEVVEKE   76 (255)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHH---HHHHh---CCCeEEEecCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999998877654322   22221   1367789999999999887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|++|||||.....++.+.++++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++.
T Consensus        77 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g---~iv~isS~~~~  142 (255)
T PRK06463         77 FGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNG---AIVNIASNAGI  142 (255)
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc---EEEEEcCHHhC
Confidence            4789999999998776777888999999999999999999999999999865543   99999998764

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.91  E-value=5.8e-23  Score=155.94  Aligned_cols=143  Identities=29%  Similarity=0.360  Sum_probs=121.9

Q ss_pred             CcCCcEEEEEcCCC-chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcC-ceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSS-GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG-IEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++||||+| |||++++++|+++|++|++++|+.++.++..+++....+ .++..+.+|+++++++++++++   
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999985 999999999999999999999998887777776654333 4678899999999999887765   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|++...  .++|+++||..+..
T Consensus        94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~g~iv~~ss~~~~~  162 (262)
T PRK07831         94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGH--GGVIVNNASVLGWR  162 (262)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CcEEEEeCchhhcC
Confidence             478999999999877777888899999999999999999999999999987641  23899999987653

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=2.7e-23  Score=158.86  Aligned_cols=137  Identities=16%  Similarity=0.238  Sum_probs=109.6

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++||||+  +|||+++|++|+++|++|++++|+++. ++..+++....+ ....+++|++|++++++++++   
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~-~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~   84 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDAL-KKRVEPLAAELG-AFVAGHCDVTDEASIDAVFETLEK   84 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHH-HHHHHHHHHhcC-CceEEecCCCCHHHHHHHHHHHHH
Confidence            3578999999997  899999999999999999999886432 222233322223 245689999999999887754   


Q ss_pred             -hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 -AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 -~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++++|++|||||....    .++.+.+.++|++.+++|+.+++.+++.+.|.|.+  +   ++|+++||.++.
T Consensus        85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~---g~Iv~iss~~~~  153 (272)
T PRK08159         85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD--G---GSILTLTYYGAE  153 (272)
T ss_pred             hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC--C---ceEEEEeccccc
Confidence             5789999999997642    46678899999999999999999999999999853  2   389999998764

>PRK08643 acetoin reductase; Validated

Probab=99.91  E-value=6.4e-23  Score=155.07  Aligned_cols=139  Identities=29%  Similarity=0.392  Sum_probs=119.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +|+++||||+++||++++++|+++|++|++++|+.+..++..+++.. .+.++..+.+|+++++++++++++    ++++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK-DGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999999998877777666643 245778899999999998887665    4789


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||||.....++.+.+.++++..+++|+.+++.+++.+.+.|++.+.  .++|+++||..+..
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~  144 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGH--GGKIINATSQAGVV  144 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CCEEEEECcccccc
Confidence            99999999877777888899999999999999999999999999976532  24899999987654

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.91  E-value=4.9e-23  Score=157.41  Aligned_cols=140  Identities=33%  Similarity=0.498  Sum_probs=117.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-------HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-------LEEAKQSIQLATGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+.       +++..+++.. .+.++..+.+|+++.+++++++
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~D~~~~~~i~~~~   81 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEA-AGGQALPLVGDVRDEDQVAAAV   81 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHH
Confidence            3678999999999999999999999999999999997653       3333344432 3557888999999999988876


Q ss_pred             Hh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          107 DE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       107 ~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++    ++++|++|||||.....++.+.+.++|++++++|+.+++.+++.+.|.|+++..+   +|+++||..+.
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g---~iv~iss~~~~  153 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENP---HILTLSPPLNL  153 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC---EEEEECCchhc
Confidence            64    4789999999998777778888999999999999999999999999999876543   89999987653

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.91  E-value=5.6e-23  Score=155.71  Aligned_cols=138  Identities=28%  Similarity=0.414  Sum_probs=115.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|++. .++..+++.. .+.++..+.+|+++.+++++++++    +
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRA-AGGEALALTADLETYAGAQAAMAAAVEAF   82 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHh-cCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999999853 3344444432 355678899999999988777654    5


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|++|||||... ..++.+.+.++|++.+++|+.+++.+++.++|.|.+++.+   +||++||.++
T Consensus        83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~iv~~sS~~~  147 (260)
T PRK12823         83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGG---AIVNVSSIAT  147 (260)
T ss_pred             CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---eEEEEcCccc
Confidence            78999999998643 4577788999999999999999999999999999876544   8999999865

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.91  E-value=6.9e-23  Score=155.71  Aligned_cols=142  Identities=27%  Similarity=0.390  Sum_probs=121.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+++||.+++++|+++|++|++++|++++.++..+++.. .+.++.++.+|+++++++++++++    +
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA-AGRRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999998877766666543 245688889999999998877654    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++||+||.....++.+.+.++++..+++|+.+++.+++.+.|.|.+...  .++|+++||..+..
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~g~iv~~sS~~~~~  152 (263)
T PRK07814         86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSG--GGSVINISSTMGRL  152 (263)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcC--CeEEEEEccccccC
Confidence            78999999999876677778899999999999999999999999999987432  24899999988754

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.91  E-value=7.5e-23  Score=153.95  Aligned_cols=140  Identities=28%  Similarity=0.443  Sum_probs=120.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ++|+++||||++|||++++++|+++|++|++++|++++.++..+++... .+.++.++.+|+++.+++++++++    .+
T Consensus         1 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          1 TRQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999998887776666543 256788899999999998887664    47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....++.+.+.+.+++++++|+.+++.+++.+.|.|++.+.+   +||++||..+..
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~~sS~~~~~  145 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSG---HLVLISSVSAVR  145 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---eEEEEecccccc
Confidence            89999999998877777777889999999999999999999999999876543   899999987654

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=2.8e-23  Score=157.94  Aligned_cols=137  Identities=15%  Similarity=0.230  Sum_probs=109.1

Q ss_pred             cCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||++  |||+++|++|+++|++|++++|+. +.++..+++.... .....+.+|++|++++++++++    
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHHhh
Confidence            5789999999986  999999999999999999999873 3334444443322 2456788999999999887754    


Q ss_pred             hCCCcEEEecCCCCCCCC-----cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGE-----LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....+     +.+.+.++|+..+++|+.+++.+++.+.|.|.+  +   ++|+++||.++..
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~---g~Iv~iss~~~~~  151 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--G---SALLTLSYLGAER  151 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC--C---cEEEEEecCCCCC
Confidence            578999999999754322     556789999999999999999999999886632  2   3899999987653

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=7e-23  Score=155.12  Aligned_cols=141  Identities=22%  Similarity=0.276  Sum_probs=116.3

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecC-----------hhHHHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARS-----------GEKLEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~-----------~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      .+++|+++||||+  +|||+++|++|+++|++|++++++           .++.++..+++. ..+.++..+.+|+++.+
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~D~~~~~   81 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELL-KNGVKVSSMELDLTQND   81 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHH-hcCCeEEEEEcCCCCHH
Confidence            4789999999998  499999999999999999987542           122223333333 33667888999999999


Q ss_pred             HHHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          101 AVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       101 ~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++++++.    ++++|++|||||.....++.+.+.++|++.+++|+.+++.++++++|.|.+++.+   +||++||.++
T Consensus        82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~  158 (256)
T PRK12859         82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGG---RIINMTSGQF  158 (256)
T ss_pred             HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCe---EEEEEccccc
Confidence            99887754    5789999999998777778889999999999999999999999999999876544   9999999887


Q ss_pred             cc
Q 030328          177 QV  178 (179)
Q Consensus       177 ~~  178 (179)
                      ..
T Consensus       159 ~~  160 (256)
T PRK12859        159 QG  160 (256)
T ss_pred             CC
Confidence            54

>PRK05855 short chain dehydrogenase; Validated

Probab=99.91  E-value=4.7e-23  Score=171.74  Aligned_cols=143  Identities=27%  Similarity=0.329  Sum_probs=125.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ....+++++||||+||||++++++|+++|++|++++|+.+..++..+++.. .+.++..+.+|++|++++++++++    
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRA-AGAVAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999888877776643 355788899999999998887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .+++|++|||||....+++.+.+.+++++++++|+.|++.+++.++|.|.+++.  .++||++||.++..
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~  457 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGT--GGHIVNVASAAAYA  457 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CcEEEEECChhhcc
Confidence            478999999999988888888999999999999999999999999999987642  24999999998764

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.91  E-value=7.1e-23  Score=159.96  Aligned_cols=141  Identities=28%  Similarity=0.390  Sum_probs=117.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +..+|+++||||++|||.+++++|+++|++|++++|+.++.++..+++.. .+.++.++.+|+++.+++++++++    .
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI-PPDSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc-cCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999999998887777666642 245678899999999999887765    3


Q ss_pred             CCCcEEEecCCCCCCC-CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPG-ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|++|||||..... ...+.++++++..+++|+.|++.+++.++|.|++.+.+ .++||++||.+.
T Consensus        82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~-~~riV~vsS~~~  148 (322)
T PRK07453         82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAP-DPRLVILGTVTA  148 (322)
T ss_pred             CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC-CceEEEEccccc
Confidence            5799999999976542 23456889999999999999999999999999876431 248999999754

>PRK06182 short chain dehydrogenase; Validated

Probab=99.91  E-value=4.6e-23  Score=157.39  Aligned_cols=133  Identities=35%  Similarity=0.509  Sum_probs=114.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      ++|+++||||+||||++++++|+++|++|++++|+++++++..+       ..+..+.+|++|.+++++++++    .++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~   74 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-------LGVHPLSLDVTDEASIKAAVDTIIAEEGR   74 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999999876554321       2367789999999998877664    478


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||....+++.+.+.++++..+++|+.+++.+++.++|.|++++.+   +||++||..+..
T Consensus        75 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g---~iv~isS~~~~~  138 (273)
T PRK06182         75 IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG---RIINISSMGGKI  138 (273)
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC---EEEEEcchhhcC
Confidence            9999999999877788888999999999999999999999999999876544   899999987643

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.1e-22  Score=153.44  Aligned_cols=141  Identities=26%  Similarity=0.385  Sum_probs=119.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+++||++++++|+++|++|++++|+.++.++..+++.. .+.++..+.+|+++.+++++++++    +
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA-AGGKAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999998887777776643 245677889999999998877654    4


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||... ..++.+.+.++++..+++|+.+++.++++++|+|++++.+   +|+++||..+..
T Consensus        84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~~  150 (252)
T PRK07035         84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGG---SIVNVASVNGVS  150 (252)
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCc---EEEEECchhhcC
Confidence            78999999998643 3456678899999999999999999999999999876543   999999987653

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.91  E-value=7.4e-23  Score=156.66  Aligned_cols=136  Identities=35%  Similarity=0.476  Sum_probs=116.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .+|+++||||+|+||++++++|+++|++|++++|+++..+...+    ..+.++..+.+|++|.+++.+++++    +++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA----LHPDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh----hcCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999999876554332    2244677889999999998877665    468


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.....++.+.+.+++++.+++|+.|++.++++++|.|++++.+   +||++||.++..
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~---~iv~iSS~~~~~  142 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRG---HIVNITSMGGLI  142 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC---EEEEEecccccC
Confidence            9999999998877788888999999999999999999999999999876544   899999987754

>PRK09186 flagellin modification protein A; Provisional

Probab=99.91  E-value=7.3e-23  Score=154.61  Aligned_cols=140  Identities=22%  Similarity=0.233  Sum_probs=117.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++||||+++||+++|++|+++|++|++++|+++..++..+++.... +..+.++.+|++|++++.+++++    +
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999999888877777664332 33456679999999998887764    4


Q ss_pred             CCCcEEEecCCCCC---CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFV---PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||...   ..++.+.+.++++..+++|+.+++.++++++|.|++++.+   +||++||.++.
T Consensus        82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~~sS~~~~  149 (256)
T PRK09186         82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG---NLVNISSIYGV  149 (256)
T ss_pred             CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---eEEEEechhhh
Confidence            77999999997643   2456778999999999999999999999999999876543   99999998764

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.91  E-value=5.7e-23  Score=155.49  Aligned_cols=140  Identities=25%  Similarity=0.308  Sum_probs=113.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~~  110 (179)
                      .+|+++||||++|||+++|++|+++| ++|++++|+++. .++..+++....+.++.++.+|++|.++++++++.   .+
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            46899999999999999999999995 999999999875 77776766554334788899999999987776654   36


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||+|...+..-...++++..+.+++|+.+++.+++.++|.|.+++.+   +|+++||.+|..
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~---~iv~isS~~g~~  151 (253)
T PRK07904         87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG---QIIAMSSVAGER  151 (253)
T ss_pred             CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc---eEEEEechhhcC
Confidence            89999999998654322223455566789999999999999999999887654   999999987754

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.91  E-value=7.3e-23  Score=154.01  Aligned_cols=139  Identities=25%  Similarity=0.382  Sum_probs=115.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+++||+++|++|+++|++|++++|++.  ++..+++.. .+.++..+.+|+++.+++++++++    .
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEA-LGRRFLSLTADLSDIEAIKALVDSAVEEF   78 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            368999999999999999999999999999999998753  233333322 345688899999999999877664    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|.+++.  .++||++||..+.
T Consensus        79 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~  144 (248)
T TIGR01832        79 GHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGR--GGKIINIASMLSF  144 (248)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--CeEEEEEecHHhc
Confidence            78999999999887777778889999999999999999999999999976541  2389999998654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.91  E-value=9.6e-23  Score=153.08  Aligned_cols=139  Identities=23%  Similarity=0.275  Sum_probs=121.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCcEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVDVL  115 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id~l  115 (179)
                      +|+++||||+++||++++++|+++|++|++++|++++.++..+++....+.++.++++|+++++++++++++. .++|++
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            4789999999999999999999999999999999988777766665545667889999999999999988764 457999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |||+|.....+..+.+.+++.+.+++|+.+++.+++.+.|.|.+++.+   +++++||..+..
T Consensus        81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~~  140 (243)
T PRK07102         81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSG---TIVGISSVAGDR  140 (243)
T ss_pred             EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC---EEEEEecccccC
Confidence            999998776777778899999999999999999999999999876654   899999987654

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.91  E-value=1.5e-22  Score=153.53  Aligned_cols=143  Identities=29%  Similarity=0.364  Sum_probs=118.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++++|+++||||+++||+++|++|+++|++|++++|+. +..+...+++.. .+.++..+.+|+++.+++++++++   
T Consensus         3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK-AGGEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-cCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999888854 344445555533 356778899999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||...+.++.+.+.++|++.+++|+.+++.+++.++|.|.+++.  .++|+++||..+..
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~--~g~iv~~sS~~~~~  150 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDI--KGNIINMSSVHEQI  150 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CcEEEEEccccccC
Confidence             578999999999877777778899999999999999999999999999987642  24899999986643

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.91  E-value=2.4e-24  Score=149.73  Aligned_cols=142  Identities=23%  Similarity=0.247  Sum_probs=126.7

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      ..++.|+.+++||++.|||+++++.|++.|++|+.+.|+++.+....++..    ..+..+..|+++.+.+.+.+...++
T Consensus         2 ~t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p----~~I~Pi~~Dls~wea~~~~l~~v~p   77 (245)
T KOG1207|consen    2 KTSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETP----SLIIPIVGDLSAWEALFKLLVPVFP   77 (245)
T ss_pred             cccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCC----cceeeeEecccHHHHHHHhhcccCc
Confidence            456789999999999999999999999999999999999998887777653    3378889999998888888877889


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|.++||||.....++.+.+.+++++.|++|+.+++.+.|...+.+..++.  .+.|+|+||.++.++
T Consensus        78 idgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~--~GaIVNvSSqas~R~  143 (245)
T KOG1207|consen   78 IDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQI--KGAIVNVSSQASIRP  143 (245)
T ss_pred             hhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccC--CceEEEecchhcccc
Confidence            999999999999999999999999999999999999999998888887765  347999999988753

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.91  E-value=8.8e-23  Score=154.10  Aligned_cols=134  Identities=28%  Similarity=0.375  Sum_probs=114.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|+++.     +    ..+..+..+.+|+++++++++++++    +
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   73 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----T----VDGRPAEFHAADVRDPDQVAALVDAIVERH   73 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----h----hcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999998754     1    1245678899999999998887655    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.++..  .++||++||.++..
T Consensus        74 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~g~ii~isS~~~~~  140 (252)
T PRK07856         74 GRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPG--GGSIVNIGSVSGRR  140 (252)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CcEEEEEcccccCC
Confidence            78999999999877667777899999999999999999999999999976432  24899999987754

>PLN00015 protochlorophyllide reductase

Probab=99.91  E-value=7.1e-23  Score=159.09  Aligned_cols=135  Identities=30%  Similarity=0.427  Sum_probs=112.8

Q ss_pred             EEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCcEE
Q 030328           41 FITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVDVL  115 (179)
Q Consensus        41 lItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id~l  115 (179)
                      +||||++|||++++++|+++| ++|++++|+++..++..+++.. .+.++..+.+|+++.+++++++++    .+++|++
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM-PKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            699999999999999999999 9999999998877766666532 244677889999999999887765    3689999


Q ss_pred             EecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          116 VVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       116 i~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |||||.... .+..+.+.++|++++++|+.|++.+++.++|.|++.+. ..++||++||.++.
T Consensus        80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~-~~g~IV~vsS~~~~  141 (308)
T PLN00015         80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDY-PSKRLIIVGSITGN  141 (308)
T ss_pred             EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CCCEEEEEeccccc
Confidence            999997543 34567789999999999999999999999999987641 12499999998764

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.6e-22  Score=152.05  Aligned_cols=141  Identities=26%  Similarity=0.403  Sum_probs=122.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+|+||++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|+++++++++++++    +
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA-AGGRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999999999998877776666543 245688899999999999887765    3


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||+|.....++.+.+.++++..++.|+.+++.+++.+.|.|.+++.+   +++++||..+..
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  148 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRG---RIVNLASDTALW  148 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe---EEEEECchhhcc
Confidence            789999999998877777888999999999999999999999999999876544   999999976643

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-22  Score=154.97  Aligned_cols=137  Identities=34%  Similarity=0.467  Sum_probs=119.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      |+++||||+|+||++++++|+++|++|++++|+.++.++..+++... +.++..+.+|++++++++++++.    .+++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA-GGDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            47999999999999999999999999999999988877777766533 56788899999999998887654    46899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||.....++.+.+.+++++.+++|+.+++.+++.++|.|++.+.+   +|+++||.++..
T Consensus        80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~vsS~~~~~  141 (270)
T PRK05650         80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSG---RIVNIASMAGLM  141 (270)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC---EEEEECChhhcC
Confidence            99999998887788889999999999999999999999999999876543   899999987754

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.91  E-value=1.8e-22  Score=152.61  Aligned_cols=140  Identities=24%  Similarity=0.341  Sum_probs=119.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+.+|+++||||+++||++++++|+++|+++++++|+.+..++..+++.. .+.++..+.+|+++.++++++++.    .
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   86 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ-LGGQAFACRCDITSEQELSALADFALSKL   86 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999999999999998887776666643 355778889999999998876654    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||...+.++ +.+.++|+..+++|+.+++++++.+.|.|.+.+.+   +||++||.++..
T Consensus        87 ~~~d~li~~ag~~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~isS~~~~~  151 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG---VILTITSMAAEN  151 (255)
T ss_pred             CCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---EEEEEecccccC
Confidence            789999999997665554 57889999999999999999999999999765443   899999988754

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.91  E-value=6.6e-23  Score=155.68  Aligned_cols=136  Identities=33%  Similarity=0.464  Sum_probs=113.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||+++|++|+++|++|++++|+++..++..+++    +.++..+.+|+++.+++++++++    ++
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   79 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF----GDHVLVVEGDVTSYADNQRAVDQTVDAFG   79 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999988776655443    34577889999999998877654    57


Q ss_pred             CCcEEEecCCCCC-CCCcccCCHHH----HHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFV-PGELEVQSLDE----VRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~-~~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||... ..++.+.++++    |++++++|+.+++.+++.++|.|++++    ++||++||.++..
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~----g~iv~~sS~~~~~  148 (263)
T PRK06200         80 KLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASG----GSMIFTLSNSSFY  148 (263)
T ss_pred             CCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcC----CEEEEECChhhcC
Confidence            8999999999754 34555556554    889999999999999999999987643    3899999987754

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=1.5e-22  Score=152.37  Aligned_cols=139  Identities=26%  Similarity=0.330  Sum_probs=118.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEE-EecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~-~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +.+|+++||||+|+||++++++|+++|++|++ .+|+.+..++..+++.. .+.++..+.+|+++++++++++++    +
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEA-LGRKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999876 47777766666666543 356788899999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||.....++.+.+.++++..+++|+.+++.+++++.|.|.+++.+   +||++||..+.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~iv~~sS~~~~  145 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGG---KIISLSSLGSI  145 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe---EEEEEcchhhc
Confidence            789999999998877788888999999999999999999999999999876543   99999997654

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=9.3e-23  Score=154.89  Aligned_cols=137  Identities=20%  Similarity=0.271  Sum_probs=106.7

Q ss_pred             cCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||  ++|||+++|++|+++|++|++++|..+..+. .+++....+. ...+.+|++|++++++++++    
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~   81 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDR-ITEFAAEFGS-DLVFPCDVASDEQIDALFASLGQH   81 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHH-HHHHHHhcCC-cceeeccCCCHHHHHHHHHHHHHH
Confidence            57899999996  6899999999999999999998765332222 2223222222 24678999999999887765    


Q ss_pred             hCCCcEEEecCCCCCCC----C-cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPG----E-LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~----~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....    + +++.+.++|+..+++|+.+++.+++.++|+|.+  +   ++|+++||.++..
T Consensus        82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~--~---g~Ii~iss~~~~~  151 (260)
T PRK06997         82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD--D---ASLLTLSYLGAER  151 (260)
T ss_pred             hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC--C---ceEEEEecccccc
Confidence            58999999999976432    2 346788999999999999999999999999942  2   3899999987754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.91  E-value=1.5e-22  Score=153.12  Aligned_cols=139  Identities=28%  Similarity=0.362  Sum_probs=118.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+.+|+++||||+++||.++|++|+++|++|++++|+.+..++..+++    +..+..+.+|+++.+++++++++    +
T Consensus         3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07067          3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI----GPAAIAVSLDVTRQDSIDRIVAAAVERF   78 (257)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999999999999988776655543    34577889999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.+.++++..+++|+.+++.+++++.+.|.++..  .++||++||..+..
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~  145 (257)
T PRK07067         79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGR--GGKIINMASQAGRR  145 (257)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC--CcEEEEeCCHHhCC
Confidence            78999999999877777888899999999999999999999999999976542  24899999976543

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.7e-22  Score=152.67  Aligned_cols=139  Identities=34%  Similarity=0.451  Sum_probs=116.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||+++||.++|++|+++|++|++++|+++.. +..+++   .+..+..+.+|+++.+++++++++    
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   86 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQL---LGGNAKGLVCDVSDSQSVEAAVAAVISA   86 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHh---hCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999987632 222222   234567899999999998887665    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||+|.....++.+.+.+++++.+++|+.+++.+++.+.|.|++++.+   +|+++||..+..
T Consensus        87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~~  153 (255)
T PRK06841         87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGG---KIVNLASQAGVV  153 (255)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCc---eEEEEcchhhcc
Confidence            4689999999998777777778899999999999999999999999999876543   999999987653

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=2.5e-22  Score=150.39  Aligned_cols=141  Identities=35%  Similarity=0.575  Sum_probs=120.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++++++|||++|+||++++++|+++|++|++++|++++.++..+++.. .+.++..+.+|+++++++++++++    .
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA-YGVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999999999998877766666643 356788899999999998887764    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||+|....+++.+.+++++++.+++|+.+++.+++.+.|.|.+...+   +++++||..+..
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~ss~~~~~  148 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSG---DIINISSTAGQK  148 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc---EEEEEcchhhcc
Confidence            689999999998766677778999999999999999999999999999776543   899999987653

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.6e-22  Score=154.68  Aligned_cols=136  Identities=32%  Similarity=0.454  Sum_probs=117.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .+|+++||||+|+||++++++|+++|++|++++|+++..++..+..    +..+..+.+|+++.+++++++++    .++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY----GDRLLPLALDVTDRAAVFAAVETAVEHFGR   77 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999999987765544332    34577889999999998877655    478


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||....+++.+.+.+++++.+++|+.+++.+++.++|.|++++.+   ++|++||.++..
T Consensus        78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~vsS~~~~~  141 (275)
T PRK08263         78 LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG---HIIQISSIGGIS  141 (275)
T ss_pred             CCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC---EEEEEcChhhcC
Confidence            9999999999888888889999999999999999999999999999876543   899999987653

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.91  E-value=2e-22  Score=152.60  Aligned_cols=140  Identities=28%  Similarity=0.415  Sum_probs=120.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+|+||++++++|+++|++|++++|++++.++..+++.. .+.++..+.+|+++.+++++++++    .
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK-AGGKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh-cCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999999999999887777776643 356788899999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHH-HhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI-KKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||.....+..+.+.++++..+++|+.+++.+++.+++.| ++.+   .++|+++||..+.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~---~~~iv~~ss~~~~  148 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR---GGVVIYMGSVHSH  148 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC---CcEEEEEcchhhc
Confidence            689999999998877777778889999999999999999999999999 5433   3499999997654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.90  E-value=8.4e-23  Score=155.10  Aligned_cols=137  Identities=32%  Similarity=0.487  Sum_probs=110.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|+++..++..+.    .+.++..+.+|+++.+++++++++    +
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA----HGDAVVGVEGDVRSLDDHKEAVARCVAAF   77 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----cCCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999999999999999998766554332    245678889999999888776654    5


Q ss_pred             CCCcEEEecCCCCCC-CCcccCCH----HHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVP-GELEVQSL----DEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~-~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.... .++.+.+.    ++|++.+++|+.+++.+++++.|.|.+.+ +   ++|++||.++..
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g---~iv~~sS~~~~~  147 (262)
T TIGR03325        78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR-G---SVIFTISNAGFY  147 (262)
T ss_pred             CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC-C---CEEEEeccceec
Confidence            899999999997532 23333333    57999999999999999999999997643 3   788998887654

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06128 oxidoreductase; Provisional

Probab=99.90  E-value=1.6e-22  Score=156.48  Aligned_cols=139  Identities=27%  Similarity=0.344  Sum_probs=114.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|++|||||++|||++++++|+++|++|++++++.+  ..++..+.+.. .+.++..+.+|+++.+++++++++   
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA-EGRKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999998887543  33444444432 356788899999999998887665   


Q ss_pred             -hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||... ..++.+.+.++|++.+++|+.+++.++++++|.|.+  +   ++||++||.++..
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~---~~iv~~sS~~~~~  197 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP--G---ASIINTGSIQSYQ  197 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc--C---CEEEEECCccccC
Confidence             478999999999754 456778899999999999999999999999999854  2   2899999987653

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=2.7e-22  Score=151.16  Aligned_cols=140  Identities=48%  Similarity=0.696  Sum_probs=128.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCce-EEEEEeeCCCHHHHHHHHHhh----CCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE-VATYSADVRDFDAVKTALDEA----GPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~v~~~~~~~----~~i  112 (179)
                      ++++|||+++|+|+++|.++..+|++|.++.|+.+.+++..+++....+.. +.+..+|+.|.++++..+++.    +++
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            899999999999999999999999999999999999999999887655444 889999999999999988875    799


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |.+|+|||...++.+.+.++++++..+++|+.|+++.+++.+|.|+++.+  .++|+.+||.++..|
T Consensus       114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~--~g~I~~vsS~~a~~~  178 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREH--LGRIILVSSQLAMLG  178 (331)
T ss_pred             ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhcccc--CcEEEEehhhhhhcC
Confidence            99999999999999999999999999999999999999999999988764  339999999987654

>PRK07985 oxidoreductase; Provisional

Probab=99.90  E-value=2.1e-22  Score=155.49  Aligned_cols=138  Identities=29%  Similarity=0.418  Sum_probs=112.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh--hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG--EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||++|||+++|++|+++|++|++++|+.  +..++..+.+. ..+.++..+.+|+++.+++.+++++    
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIE-ECGRKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHH-HcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999988653  23444433332 2356678899999999998877654    


Q ss_pred             hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||... ..++.+.++++|++.+++|+.+++.+++++.|.|.+.     ++||++||.++..
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-----g~iv~iSS~~~~~  191 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-----ASIITTSSIQAYQ  191 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-----CEEEEECCchhcc
Confidence            578999999999753 3567788999999999999999999999999998542     3899999987754

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.5e-22  Score=153.28  Aligned_cols=140  Identities=29%  Similarity=0.382  Sum_probs=115.9

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ..++++|+++||||+++||+++|++|+++|++|++++|+++.. +..+++.. .+.++..+.+|+++.+++++++++   
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRA-LQPRAEFVQVDLTDDAQCRDAVEQTVA   79 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999988765 44455533 355688899999999998887765   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||......+++.+ ++|+..+++|+.+++.+++.+.|.|++..    ++|+++||..+..
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~----~~iv~~ss~~~~~  145 (258)
T PRK08628         80 KFGRIDGLVNNAGVNDGVGLEAGR-EAFVASLERNLIHYYVMAHYCLPHLKASR----GAIVNISSKTALT  145 (258)
T ss_pred             hcCCCCEEEECCcccCCCcccCCH-HHHHHHHhhhhHHHHHHHHHHHHHhhccC----cEEEEECCHHhcc
Confidence             47899999999976555555444 89999999999999999999999887543    3899999987654

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.4e-22  Score=153.44  Aligned_cols=139  Identities=28%  Similarity=0.446  Sum_probs=116.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      |+++||||++|||++++++|+++|++|++++|+++..++..+++....+.....+.+|+++++++++++++    .+++|
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            57999999999999999999999999999999988777776666543333345578999999998877655    47899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||+|.....++.+.+.++++..+++|+.+++.+++.++|.|.+.+.  .++|+++||..+..
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~--~g~ii~isS~~~~~  143 (272)
T PRK07832         81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGR--GGHLVNVSSAAGLV  143 (272)
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--CcEEEEEccccccC
Confidence            9999999877677888999999999999999999999999999976532  24999999987653

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.90  E-value=8.7e-23  Score=158.38  Aligned_cols=140  Identities=24%  Similarity=0.335  Sum_probs=116.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++... .+.++.++.+|++|.+++++++++   
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            3568999999999999999999999999999999999988777666665432 245688899999999999887765   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++++|++|||||...+.  .+.+.++++..+++|+.|++.+++.++|.|++.+.+   +||++||.++.
T Consensus        92 ~~~~iD~li~nAg~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~---~iV~vSS~~~~  156 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTP--KQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGS---RVVTVSSGGHR  156 (306)
T ss_pred             hCCCCCEEEECCccccCC--CccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCC---EEEEECCHHHh
Confidence             47899999999976532  345678889999999999999999999999876543   99999997643

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.90  E-value=1.8e-22  Score=152.99  Aligned_cols=137  Identities=26%  Similarity=0.320  Sum_probs=114.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      ++++||||++|||+++|++|+++|++|++++|+++..++..+++...  .++..+.+|++|++++++++++    ++++|
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY--GEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            37999999999999999999999999999999998887777776432  3577899999999999887754    57899


Q ss_pred             EEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||...  +.++.+.+.++|.+.+++|+.+++.+++.++|.|.+++.  .++||++||.++..
T Consensus        79 ~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~--~g~iv~isS~~~~~  143 (259)
T PRK08340         79 ALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKM--KGVLVYLSSVSVKE  143 (259)
T ss_pred             EEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCC--CCEEEEEeCcccCC
Confidence            9999999754  335667888999999999999999999999998864322  24999999987753

>PRK06484 short chain dehydrogenase; Validated

Probab=99.90  E-value=1.4e-22  Score=167.40  Aligned_cols=135  Identities=34%  Similarity=0.427  Sum_probs=115.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ..+|+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++..+.+|++|++++++++++    ++
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  342 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL----GDEHLSVQADITDEAAVESAFAQIQARWG  342 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999988776665543    45567789999999998887654    58


Q ss_pred             CCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||... ..++.+.+.++|++++++|+.+++++++.++|.|.  +.   ++||++||.++..
T Consensus       343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~---g~iv~isS~~~~~  406 (520)
T PRK06484        343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMS--QG---GVIVNLGSIASLL  406 (520)
T ss_pred             CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhc--cC---CEEEEECchhhcC
Confidence            9999999999864 35677889999999999999999999999999992  22   3999999998764

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=3.1e-22  Score=150.59  Aligned_cols=140  Identities=31%  Similarity=0.410  Sum_probs=119.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+|+||.+++++|+++|++|++++|+++..++...++..  +.++.++.+|+++.+++++++++    .
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA--GGRAIAVAADVSDEADVEAAVAAALERF   79 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999998877766555533  45688899999999999887654    4


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++||++|... ..++.+.+.+++++.+++|+.+++.+++.+.+.|.+++.   ++|+++||..+..
T Consensus        80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~~sS~~~~~  146 (251)
T PRK07231         80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG---GAIVNVASTAGLR  146 (251)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC---cEEEEEcChhhcC
Confidence            78999999999754 345777889999999999999999999999999987554   3899999987643

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.90  E-value=2.9e-22  Score=151.31  Aligned_cols=140  Identities=34%  Similarity=0.472  Sum_probs=121.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++|||++|+||++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|+++.++++++++.    ++
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK-AGGKAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999998887776666543 356788899999999999887765    46


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....+..+.+.++++..+++|+.+++.+++.++|.|++++.   ++|+++||..+..
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~iss~~~~~  145 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG---GRIINMASVHGLV  145 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC---eEEEEEcchhhcc
Confidence            8999999999887777788899999999999999999999999999987654   3999999987654

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.90  E-value=3.9e-22  Score=150.18  Aligned_cols=140  Identities=29%  Similarity=0.364  Sum_probs=117.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+|+||++++++|+++|++|++++|+++..+...+++... +.++..+.+|+++.+++++++++    .
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-GGTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            357899999999999999999999999999999999987766666555432 34567789999999998776654    4


Q ss_pred             CCCcEEEecCCCCC---CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFV---PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||...   ..++.+.+.+++++.+++|+.+++.++++++|.|.+.+.+   +|+++||.++.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~  149 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGG---AIVNQSSTAAW  149 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc---EEEEEeccccc
Confidence            78999999999764   3456677889999999999999999999999999876543   99999998764

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.3e-22  Score=154.63  Aligned_cols=131  Identities=35%  Similarity=0.484  Sum_probs=113.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .+++++||||+|+||++++++|+++|++|++++|++++.+.         ...+..+.+|++|+++++++++.    +++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   73 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR   73 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999999999999998754321         13467789999999999887765    478


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.....++.+.+.++++..+++|+.|++.+++.++|.|++++.+   +||++||.++..
T Consensus        74 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~---~iv~isS~~~~~  137 (270)
T PRK06179         74 IDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSG---RIINISSVLGFL  137 (270)
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---eEEEECCccccC
Confidence            9999999998877788888999999999999999999999999999876544   999999987754

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.90  E-value=3.8e-22  Score=149.96  Aligned_cols=140  Identities=25%  Similarity=0.387  Sum_probs=115.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++|||++++||+++|++|+++|++|++.. ++.+..++..+++.. .+.++..+.+|++|.+++++++++    .
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKA-LGFDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999988754 444444444444432 356677889999999998877654    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++++++|+.+++.+++.+.|.|.+.+.   ++|+++||..+..
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~iv~isS~~~~~  145 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGW---GRIINISSVNGQK  145 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC---eEEEEEechhccC
Confidence            78999999999877667788899999999999999999999999999976543   3899999987654

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=1.6e-22  Score=153.28  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=107.8

Q ss_pred             CcCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecCh--hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           34 PIKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSG--EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        34 ~~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .+++|+++||||  ++|||+++|++|+++|++|++++|+.  +..++..+++    +.++..+.+|++|++++++++++ 
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~   79 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL----PEPAPVLELDVTNEEHLASLADRV   79 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc----CCCCcEEeCCCCCHHHHHHHHHHH
Confidence            467899999999  89999999999999999999998764  3334333332    23567789999999999887654 


Q ss_pred             ---hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          109 ---AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                         ++++|++|||||....    .++.+.+.++|++.+++|+.+++.+++.++|.|++  ++   +|+++|+.
T Consensus        80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~--~g---~Iv~is~~  147 (256)
T PRK07889         80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE--GG---SIVGLDFD  147 (256)
T ss_pred             HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc--Cc---eEEEEeec
Confidence               5789999999997643    35667789999999999999999999999999963  23   88888764

>PRK06196 oxidoreductase; Provisional

Probab=99.90  E-value=1.7e-22  Score=157.39  Aligned_cols=133  Identities=26%  Similarity=0.399  Sum_probs=112.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++.     ++..+.+|++|.+++++++++    .
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~   97 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSG   97 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999999999999999887766655542     267789999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|++|||||.....  .+.+.++|+..+++|+.+++.+++.++|.|.+.+.   ++||++||..+
T Consensus        98 ~~iD~li~nAg~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~---~~iV~vSS~~~  159 (315)
T PRK06196         98 RRIDILINNAGVMACP--ETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAG---ARVVALSSAGH  159 (315)
T ss_pred             CCCCEEEECCCCCCCC--CccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCC---CeEEEECCHHh
Confidence            7899999999975432  34567889999999999999999999999987643   39999999754

>PRK12743 oxidoreductase; Provisional

Probab=99.90  E-value=5e-22  Score=150.39  Aligned_cols=140  Identities=25%  Similarity=0.327  Sum_probs=116.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      .+|+++||||+++||++++++|+++|++|+++++ +.+..++..+++.. .+.++..+.+|+++++++++++++    ++
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRS-HGVRAEIRQLDLSDLPEGAQALDKLIQRLG   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999988865 44555555555543 356788899999999998777654    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||+|.....++.+.+.++|++.+++|+.+++.+++++.+.|.+++.  .++||++||..+..
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~--~g~ii~isS~~~~~  145 (256)
T PRK12743         80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQ--GGRIINITSVHEHT  145 (256)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CeEEEEEeeccccC
Confidence            8999999999877667777899999999999999999999999999976532  24899999987643

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.90  E-value=4.8e-22  Score=149.47  Aligned_cols=140  Identities=31%  Similarity=0.459  Sum_probs=117.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++|||++++||.++|++|+++|++|+++++ +++..++..+++.. .+.++.++.+|+++++++++++++    +
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGK-EGHDVYAVQADVSKVEDANRLVEEAVNHF   82 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999987665 44555555555542 356788899999999999887766    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||......+.+.+.+++++.+++|+.+++.++++++|.|.++..+   +++++||..+..
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~~  148 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEG---RIISISSIIGQA  148 (247)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc---EEEEEcchhhcC
Confidence            789999999998777777778899999999999999999999999999766543   999999987654

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4e-22  Score=152.61  Aligned_cols=139  Identities=29%  Similarity=0.422  Sum_probs=118.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ++|+++||||+|++|++++++|+++|++|++++|+++..++..+++.... +.++..+.+|++|++++++ +++    .+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcC
Confidence            57899999999999999999999999999999999887776665554322 3468889999999999876 443    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||......+.+.+.+++++.+++|+.+++.+++.++|.|++.+.+   +|+++||..+..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~vsS~~~~~  145 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSG---KIINISSISGRV  145 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC---EEEEECcccccC
Confidence            89999999998877777888999999999999999999999999999876543   899999986654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.90  E-value=5e-22  Score=150.52  Aligned_cols=139  Identities=31%  Similarity=0.447  Sum_probs=117.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||+|+||.++|++|+++|++|++++|+.++.+...+++.. .+.++..+.+|++|++++++++++    .+
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA-LGIDALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999999998877766665543 345677899999999999776654    47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHH-HHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL-IKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|++|||||.....+..+.+.+.|++.+++|+.+++.+++++.|. |.+++.   ++++++||..+.
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~---~~~v~~sS~~~~  153 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGY---GRIINVASVAGL  153 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCC---eEEEEECChhhc
Confidence            8999999999876667777889999999999999999999999998 655433   489999997654

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4.8e-22  Score=148.93  Aligned_cols=142  Identities=25%  Similarity=0.375  Sum_probs=116.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC--HHHHHHHHH----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD--FDAVKTALD----  107 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~v~~~~~----  107 (179)
                      ++++|+++||||+++||++++++|+++|++|++++|++++.++..+++....+.++..+.+|+++  .++++++++    
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~   82 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE   82 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999888777777654434456778899875  445555443    


Q ss_pred             hh-CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          108 EA-GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       108 ~~-~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +. +++|++|||||... ..++.+.+.+++++.+++|+.+++.+++.+.|.|.+.+.+   +++++||..+..
T Consensus        83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~---~iv~~ss~~~~~  152 (239)
T PRK08703         83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDA---SVIFVGESHGET  152 (239)
T ss_pred             HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCC---EEEEEecccccc
Confidence            34 68999999999754 3567788999999999999999999999999999876543   899999987654

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4.4e-22  Score=149.26  Aligned_cols=138  Identities=34%  Similarity=0.468  Sum_probs=118.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      ++|+++|||++|++|++++++|+++|++|++++|+++..++..+++.. .+.++.++.+|+++++++.+.++.    +++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-TGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-CCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999999999999999999999998877766665543 345688899999999998776654    578


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +|++|||+|.....++.+.+.++++..+++|+.+++.+++.+.|.|.+++.+   +|+++||..+.
T Consensus        84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~isS~~~~  146 (241)
T PRK07454         84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGG---LIINVSSIAAR  146 (241)
T ss_pred             CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc---EEEEEccHHhC
Confidence            9999999998777777788899999999999999999999999999876543   99999998754

>PRK06484 short chain dehydrogenase; Validated

Probab=99.90  E-value=3.2e-22  Score=165.30  Aligned_cols=138  Identities=30%  Similarity=0.458  Sum_probs=117.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      .++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++..+.+|+++++++++++++    ++
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL----GPDHHALAMDVSDEAQIREGFEQLHREFG   78 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999988776655544    45677899999999998887755    57


Q ss_pred             CCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||...  ..++.+.+.++|++++++|+.+++.++++++|.|.+++.+  .+||++||.++..
T Consensus        79 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g--~~iv~isS~~~~~  146 (520)
T PRK06484         79 RIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHG--AAIVNVASGAGLV  146 (520)
T ss_pred             CCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--CeEEEECCcccCC
Confidence            8999999999743  2456778999999999999999999999999999775432  3899999988764

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4.4e-22  Score=149.72  Aligned_cols=135  Identities=34%  Similarity=0.474  Sum_probs=113.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||+++||++++++|+++|++|++++|+++..++..+++    +.++..+.+|+++.+++.++++.    .+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL----GESALVIRADAGDVAAQKALAQALAEAFG   79 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh----CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999877665544433    45677889999999988776553    47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....++.+.+.++++..+++|+.+++.+++++.|.|.+.     ++++++||.++..
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~~i~~~S~~~~~  142 (249)
T PRK06500         80 RLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANP-----ASIVLNGSINAHI  142 (249)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-----CEEEEEechHhcc
Confidence            89999999998776777788999999999999999999999999988532     2788888876543

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.90  E-value=6.1e-22  Score=152.67  Aligned_cols=141  Identities=35%  Similarity=0.462  Sum_probs=116.0

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ...+++|+++||||+++||.+++++|+++|++|++++|+.+ ..++..+.+. ..+.++.++.+|+++.+++++++++  
T Consensus        41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~i~  119 (290)
T PRK06701         41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVE-KEGVKCLLIPGDVSDEAFCKDAVEETV  119 (290)
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999864 3444444332 2356788899999999998887765  


Q ss_pred             --hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        .+++|++|||||.... .++.+.+.++|.+++++|+.+++.+++++.+.|++.     +++|++||.++..
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~-----g~iV~isS~~~~~  187 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQG-----SAIINTGSITGYE  187 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhC-----CeEEEEecccccC
Confidence              4789999999997643 567778999999999999999999999999988542     2899999987654

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.90  E-value=2.9e-22  Score=149.85  Aligned_cols=135  Identities=17%  Similarity=0.246  Sum_probs=110.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +|+++||||++|||++++++|+++|++|++++|++++..   +++.. .+  +..+.+|+++.+++++++++    ++++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~-~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~i   75 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQ-AG--AQCIQADFSTNAGIMAFIDELKQHTDGL   75 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHH-cC--CEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence            689999999999999999999999999999999876432   22221 12  56789999999999887765    4679


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||||........+.+.++|++++++|+.+++.+++.+.|.|.+.+. ..++|+++||.++..
T Consensus        76 d~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~-~~g~iv~~ss~~~~~  140 (236)
T PRK06483         76 RAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGH-AASDIIHITDYVVEK  140 (236)
T ss_pred             cEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCC-CCceEEEEcchhhcc
Confidence            99999999765555566788999999999999999999999999987541 124899999987643

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4.7e-22  Score=150.66  Aligned_cols=133  Identities=25%  Similarity=0.337  Sum_probs=111.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .++++|+++||||++|||++++++|+++|++|++++|+++..          .+.++.++.+|++|.+++++++++    
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~~~   74 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD----------LPEGVEFVAADLTTAEGCAAVARAVLER   74 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh----------cCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999986531          134577889999999998876544    


Q ss_pred             hCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||...  ..++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||..+..
T Consensus        75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~ii~isS~~~~~  143 (260)
T PRK06523         75 LGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSG---VIIHVTSIQRRL  143 (260)
T ss_pred             cCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc---EEEEEecccccC
Confidence            578999999999653  3456678899999999999999999999999999876543   899999987653

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.90  E-value=6.5e-22  Score=151.24  Aligned_cols=134  Identities=36%  Similarity=0.538  Sum_probs=114.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      .|+++||||+|+||++++++|+++|++|++++|+++..++..++.    +.++.++.+|++|.+++++++++    .+++
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY----GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999999987665544332    34678889999999998877654    5789


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |++|||||.....+..+.+++++++.+++|+.+++.++++++|.|++++.+   +||++||..+.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~  139 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGG---RIVQVSSEGGQ  139 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEEcCcccc
Confidence            999999998877777778899999999999999999999999999776543   89999998764

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.90  E-value=7.6e-22  Score=148.50  Aligned_cols=140  Identities=34%  Similarity=0.499  Sum_probs=119.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++..+++.. .+.++..+.+|+++.++++++++.    .+
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   79 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA-KGGNAQAFACDITDRDSVDTAVAAAEQALG   79 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999998877766665543 255688899999999998887654    46


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++||++|.....++.+.+.++++..+++|+.+++.+++.+.|.|++.+.   .+|+++||.++..
T Consensus        80 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~ii~iss~~~~~  144 (250)
T TIGR03206        80 PVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGA---GRIVNIASDAARV  144 (250)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC---eEEEEECchhhcc
Confidence            8999999999876677777889999999999999999999999999977643   3899999987653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.90  E-value=6.7e-22  Score=150.07  Aligned_cols=137  Identities=34%  Similarity=0.515  Sum_probs=116.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||+++||++++++|+++|++|++++|+++ .++..+++. ..+.++..+.+|+++++++++++++    ++
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELC-GRGHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHH-HhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999875 333334443 2356678899999999998887765    47


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++|++|||||.....++.+.+.+++++.+++|+.+++.+++.+.|.|.+.+.+   +|+++||..+
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~isS~~~  144 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDG---RIVMMSSVTG  144 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc---EEEEECcHHh
Confidence            89999999998777778888999999999999999999999999998765443   8999999765

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.90  E-value=5.1e-22  Score=151.70  Aligned_cols=130  Identities=29%  Similarity=0.385  Sum_probs=110.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      |+++||||+||||++++++|+++|++|++++|++++.++..+       ..+..+.+|+++.++++++++.    .+++|
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   74 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA-------AGFTAVQLDVNDGAALARLAEELEAEHGGLD   74 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            789999999999999999999999999999999876543321       1256788999999998877765    47899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||....+++.+.+.++++..+++|+.|++.+++.++|.|++..    ++|+++||.++..
T Consensus        75 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~----g~iv~isS~~~~~  135 (274)
T PRK05693         75 VLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSR----GLVVNIGSVSGVL  135 (274)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC----CEEEEECCccccC
Confidence            999999987777777889999999999999999999999999997542    3899999988754

>TIGR02415 23BDH acetoin reductases

Probab=99.89  E-value=8.7e-22  Score=148.58  Aligned_cols=138  Identities=32%  Similarity=0.441  Sum_probs=118.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      |+++|||++|+||++++++|+++|++|++++|++++.++..+++.. .+.++..+.+|+++++++.+++++    .+++|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQ-AGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            6899999999999999999999999999999998777766666543 356788899999999998887654    47899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||+|.....++.+.+.+++++.+++|+.+++.+++.+.+.|++.+.+  ++++++||..+..
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~  142 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHG--GKIINAASIAGHE  142 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCC--eEEEEecchhhcC
Confidence            99999998777777888999999999999999999999999999876532  4899999987654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.89  E-value=8.6e-22  Score=147.70  Aligned_cols=138  Identities=28%  Similarity=0.402  Sum_probs=116.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+|+||++++++|+++|+.|++.+|+.++.++..+++    +.++..+.+|+++.+++++++++    +
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL----GERVKIFPANLSDRDEVKALGQKAEADL   78 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            467899999999999999999999999999999999887766554432    44677889999999999887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++++..+++|+.+++++++++.+.+.+++.+   +||++||..+..
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~~  144 (245)
T PRK12936         79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYG---RIINITSVVGVT  144 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC---EEEEECCHHhCc
Confidence            789999999998776677778889999999999999999999999988765443   899999987654

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6e-22  Score=149.78  Aligned_cols=135  Identities=34%  Similarity=0.415  Sum_probs=113.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||+|+||.+++++|+++|++|++++|+.+..++..+++.    .  ..+.+|+++.+++++++++    .+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~--~~~~~D~~~~~~~~~~~~~~~~~~~   78 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----G--LFVPTDVTDEDAVNALFDTAAETYG   78 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----C--cEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            689999999999999999999999999999999998876655444331    1  4678999999999888765    36


Q ss_pred             CCcEEEecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||...+  .++.+.+.+.+++.+++|+.+++.+++.++|.|++++.+   +|+++||..+..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g---~iv~~sS~~~~~  145 (255)
T PRK06057         79 SVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKG---SIINTASFVAVM  145 (255)
T ss_pred             CCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCc---EEEEEcchhhcc
Confidence            89999999997643  356677889999999999999999999999999876544   899999976544

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=9.5e-22  Score=148.53  Aligned_cols=141  Identities=30%  Similarity=0.449  Sum_probs=115.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      +|+++||||+|+||++++++|+++|++|++++|+.+ ..++..+++.. .+.++.++.+|+++++++.+++++    +++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA-LGVEVIFFPADVADLSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999999999999998753 33444444432 245688899999999998887765    378


Q ss_pred             CcEEEecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCC---CcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGG---PASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~---~~~iv~iss~~g~~  178 (179)
                      +|++|||+|....  .++.+.++++++..+++|+.+++.+++.+.+.|.+++.+.   ..+|+++||..+..
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~  152 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM  152 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc
Confidence            9999999997543  4567788999999999999999999999999998765432   45799999987653

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=1.1e-21  Score=148.55  Aligned_cols=140  Identities=19%  Similarity=0.252  Sum_probs=114.7

Q ss_pred             CcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecC-----------hhHHHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           34 PIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARS-----------GEKLEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        34 ~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~-----------~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      ++++|+++||||++  |||.+++++|+++|++|++++|+           .+......+++. ..+.++.++.+|+++.+
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~   80 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIE-SYGVRCEHMEIDLSQPY   80 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHH-hcCCeEEEEECCCCCHH
Confidence            46789999999994  99999999999999999999987           222222333332 23567889999999999


Q ss_pred             HHHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          101 AVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       101 ~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++++++++    ++++|++|||||.....++.+.++++++..+++|+.+++.+.+++.|.|.++..+   +|+++||..+
T Consensus        81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~ss~~~  157 (256)
T PRK12748         81 APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGG---RIINLTSGQS  157 (256)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCe---EEEEECCccc
Confidence            98877665    4789999999998766777788999999999999999999999999998765443   8999999876


Q ss_pred             c
Q 030328          177 Q  177 (179)
Q Consensus       177 ~  177 (179)
                      .
T Consensus       158 ~  158 (256)
T PRK12748        158 L  158 (256)
T ss_pred             c
Confidence            4

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.2e-21  Score=149.65  Aligned_cols=141  Identities=31%  Similarity=0.388  Sum_probs=118.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||+|+||.+++++|+++|++|++++|++++.++..+++.... +.++..+.+|+++++++.+++++    
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999887776666554322 35678889999999998877665    


Q ss_pred             hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      .+++|++|||+|.... .++.+.+.++++.++++|+.+++.+++++.+.|.+++.+   +|+++||..+.
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~~sS~~~~  150 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGG---SFVGISSIAAS  150 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---EEEEEechhhc
Confidence            4789999999996542 466678899999999999999999999999999766543   89999998654

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.4e-21  Score=146.97  Aligned_cols=141  Identities=30%  Similarity=0.382  Sum_probs=114.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      +|+++|||++++||++++++|+++|++|+++++ +++..++..+++.. .+.++..+.+|+++.+++++++++    +++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRR-QGGEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHh-CCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999988874 44444444444432 345677899999999998887764    478


Q ss_pred             CcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.... .++.+.++++|+..+++|+.+++.+++.+++.|.++..+..++|+++||.++..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  148 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARL  148 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcC
Confidence            9999999998654 456778899999999999999999999999999765433345899999987654

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2e-21  Score=147.19  Aligned_cols=138  Identities=21%  Similarity=0.265  Sum_probs=114.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ..+|+++||||+++||++++++|+++|++|++++++ .+..++..+++.. .+.++..+.+|++|.+++++++++    .
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   85 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRA-LGRRAVALQADLADEAEVRALVARASAAL   85 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            368899999999999999999999999999887764 4445555554432 255688899999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|++|||||.....++.+.+.+++++++++|+.+++.+++.+.+.|.+...+   ++++++|..+
T Consensus        86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~~s~~~  149 (258)
T PRK09134         86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARG---LVVNMIDQRV  149 (258)
T ss_pred             CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---eEEEECchhh
Confidence            789999999998777777788999999999999999999999999998765443   8999988644

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.2e-21  Score=147.00  Aligned_cols=138  Identities=28%  Similarity=0.391  Sum_probs=115.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ..++|+++||||+++||+++|++|+++|++++++.++.+ ..++..+++.. .+.++..+.+|+++.+++++++++    
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA-AGGRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999988877544 34444444433 356788899999999999887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|++|||||.....++.+.+.+++++++++|+.+++.+++++.|.|.+.     ++|+++||.++.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-----~~iv~~ss~~~~  144 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQG-----GRIINLSTSVIA  144 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccC-----cEEEEEeecccc
Confidence            5789999999998777777788899999999999999999999999988542     389999987654

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.2e-21  Score=146.68  Aligned_cols=143  Identities=29%  Similarity=0.456  Sum_probs=121.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+|+||++++++|+++|++|++++|++++.++..+++... +.++..+.+|+++.+++++++++    .
T Consensus         6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (258)
T PRK06949          6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-GGAAHVVSLDVTDYQSIKAAVAHAETEA   84 (258)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            368999999999999999999999999999999999998877776665432 45678899999999998887654    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC-----CCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG-----GPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-----~~~~iv~iss~~g~  177 (179)
                      +++|++|||+|.....++.+.+.++|+.++++|+.+++.+++.+.|.|.++..+     ..++++++||..+.
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~  157 (258)
T PRK06949         85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGL  157 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECccccc
Confidence            789999999998776777778889999999999999999999999999876531     13589999998764

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2e-21  Score=148.61  Aligned_cols=140  Identities=30%  Similarity=0.426  Sum_probs=118.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ...|+++||||+|+||++++++|+++|++|++++|+.+..++..+++.. .+.++..+.+|+++++++.+++++    .+
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRA-DGGEAVAFPLDVTDPDSVKSFVAQAEEALG   86 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999999999999988776655555433 245678889999999999888765    46


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....+..+.+++.+++.+++|+.+++.+++.++|.|.+++.+   +|+++||.++..
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g---~iv~isS~~~~~  151 (274)
T PRK07775         87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRG---DLIFVGSDVALR  151 (274)
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---eEEEECChHhcC
Confidence            89999999998766667778899999999999999999999999999776543   899999986643

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.89  E-value=2.5e-21  Score=145.68  Aligned_cols=141  Identities=30%  Similarity=0.398  Sum_probs=115.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .|+++||||+++||.+++++|+++|++|++++ |+++..++..+++.. .+.++..+.+|+++.+++++++++    +++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA-AGGRACVVAGDVANEADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999999999998765 555555555555533 355788999999999998887764    468


Q ss_pred             CcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.... .++.+.++++++..+++|+.+++.+++.+++.|..++.+..++||++||.++..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~  148 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRL  148 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcC
Confidence            9999999997654 456678899999999999999999999999998766543345899999987654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.89  E-value=8e-22  Score=149.92  Aligned_cols=132  Identities=30%  Similarity=0.388  Sum_probs=111.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||++++++|+++|++|++++++++..+          ..++..+.+|+++++++++++++    +
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~~~~~   75 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ----------HENYQFVPTDVSSAEEVNHTVAEIIEKF   75 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc----------cCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999999875432          23567789999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCC---------CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPG---------ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~---------~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....         +..+.+.++|++.+++|+.+++.+++++.|.|.+++.+   +||++||.++..
T Consensus        76 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  150 (266)
T PRK06171         76 GRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDG---VIVNMSSEAGLE  150 (266)
T ss_pred             CCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCc---EEEEEccccccC
Confidence            7899999999975432         23457899999999999999999999999999876544   899999988754

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.4e-21  Score=144.79  Aligned_cols=137  Identities=42%  Similarity=0.556  Sum_probs=117.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +.+++++||||+|++|++++++|+++|++|++++|++++.++..+++...  .++..+.+|+++.+++.+.+++    ++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999988777666665432  5678899999999998887764    46


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|++||++|....+++.+.+.+++++++++|+.+++.+++++++.|.+ +.   +++|++||.++.
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~---~~iv~~ss~~~~  144 (237)
T PRK07326         82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKR-GG---GYIINISSLAGT  144 (237)
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHH-CC---eEEEEECChhhc
Confidence            8999999999877777778899999999999999999999999999833 22   389999998654

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=3e-22  Score=143.41  Aligned_cols=134  Identities=31%  Similarity=0.375  Sum_probs=113.2

Q ss_pred             CCcEEEEEcCC-CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-----h
Q 030328           36 KDRHVFITGGS-SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-----A  109 (179)
Q Consensus        36 ~~k~vlItGa~-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-----~  109 (179)
                      ..|.++|||++ ||||.+++++|.++|+.|+.+.|+.+.-.....+      ........|+++++++.++..+     .
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~------~gl~~~kLDV~~~~~V~~v~~evr~~~~   79 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ------FGLKPYKLDVSKPEEVVTVSGEVRANPD   79 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh------hCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence            46788999776 8999999999999999999999988765544332      2367789999999998776543     4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |.+|+|+||||.....|..+.+.++.+++|++|+.|.+++++++...+.+. +|   .|||++|.++..+
T Consensus        80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika-KG---tIVnvgSl~~~vp  145 (289)
T KOG1209|consen   80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA-KG---TIVNVGSLAGVVP  145 (289)
T ss_pred             CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc-cc---eEEEecceeEEec
Confidence            899999999999998899999999999999999999999999999666554 44   9999999988653

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=2.9e-21  Score=145.35  Aligned_cols=142  Identities=31%  Similarity=0.441  Sum_probs=117.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC--CHHHHHHHHH----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR--DFDAVKTALD----  107 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~--~~~~v~~~~~----  107 (179)
                      .+++|+++|||++++||.+++++|+++|++|++++|+.+..++..+++....+.++.++.+|++  +.++++++++    
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999888777767665443445667777875  6677666544    


Q ss_pred             hhCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          108 EAGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       108 ~~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .++++|++|||||.... .++.+.+.+.+++.+++|+.+++.+++++.|.|.+.+.+   +|+++||..+..
T Consensus        89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~---~iv~~ss~~~~~  157 (247)
T PRK08945         89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA---SLVFTSSSVGRQ  157 (247)
T ss_pred             HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC---EEEEEccHhhcC
Confidence            35789999999997543 456677889999999999999999999999999876543   899999987654

>PRK08264 short chain dehydrogenase; Validated

Probab=99.89  E-value=2.1e-21  Score=145.27  Aligned_cols=134  Identities=31%  Similarity=0.401  Sum_probs=116.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+.+|+++||||+|++|+++|++|+++|+ +|++++|++++.++        .+.++..+.+|+++.++++++++..+++
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~i   74 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD--------LGPRVVPLQLDVTDPASVAAAAEAASDV   74 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh--------cCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence            46789999999999999999999999999 99999998765443        2456888999999999999999988889


Q ss_pred             cEEEecCCC-CCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++||++|. ....++.+.+.++++..+++|+.+++.+++++.|.+++.+.+   +++++||..+..
T Consensus        75 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~~v~~sS~~~~~  138 (238)
T PRK08264         75 TILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGG---AIVNVLSVLSWV  138 (238)
T ss_pred             CEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEEcChhhcc
Confidence            999999998 455667788999999999999999999999999998876543   899999976643

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=9.2e-23  Score=157.50  Aligned_cols=141  Identities=18%  Similarity=0.216  Sum_probs=99.6

Q ss_pred             CcCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHH---------hhcCc-------------
Q 030328           32 RIPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ---------LATGI-------------   87 (179)
Q Consensus        32 ~~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~---------~~~~~-------------   87 (179)
                      ...+++|+++|||++  +|||+++|+.|+++|++|++.++.+. +....+...         ...+.             
T Consensus         3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d   81 (299)
T PRK06300          3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPI-YKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDAS   81 (299)
T ss_pred             CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccch-hhhhhhhcccccccccccccccchhhhhhHHHhhhh
Confidence            456789999999996  99999999999999999999876420 110000000         00000             


Q ss_pred             --eEEEEEeeCCC--------HHHHHHH----HHhhCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHH
Q 030328           88 --EVATYSADVRD--------FDAVKTA----LDEAGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIK  151 (179)
Q Consensus        88 --~v~~~~~D~~~--------~~~v~~~----~~~~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~  151 (179)
                        ....+.+|+.+        .++++++    .++++++|++|||||...  ..++.+.+.++|++.+++|+.|++++++
T Consensus        82 ~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~  161 (299)
T PRK06300         82 FDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLS  161 (299)
T ss_pred             cCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence              11112222222        1234444    445689999999998653  4678889999999999999999999999


Q ss_pred             HHcHHHHhccCCCCcEEEEecccCccc
Q 030328          152 AALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       152 ~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|.|+++  |   +|+++||.++..
T Consensus       162 a~~p~m~~~--G---~ii~iss~~~~~  183 (299)
T PRK06300        162 HFGPIMNPG--G---STISLTYLASMR  183 (299)
T ss_pred             HHHHHhhcC--C---eEEEEeehhhcC
Confidence            999999642  3   899999987754

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.89  E-value=3.3e-21  Score=145.96  Aligned_cols=140  Identities=25%  Similarity=0.421  Sum_probs=119.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++||||+++||++++++|+++|++ |++++|++++.+...+++. ..+.++.++.+|+++++++.++++.    +
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELE-ALGAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999 9999999877666555553 2356788899999999998887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++||++|....+++.+.+++.++.++++|+.+++.++++++|.|.+++.  .++++++||..+.
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~g~iv~~ss~~~~  148 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKA--EGTIVNIGSMSAH  148 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CCEEEEECCcccc
Confidence            78999999999877777777899999999999999999999999999976542  2489999998764

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.89  E-value=2.4e-21  Score=146.00  Aligned_cols=132  Identities=28%  Similarity=0.473  Sum_probs=114.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+++|+++||||+++||++++++|+++|++|++++|+.         . ...+.++..+.+|+++.+++++++++    
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   73 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------L-TQEDYPFATFVLDVSDAAAVAQVCQRLLAE   73 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------h-hhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999986         1 11245678899999999999887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      .+++|++|||+|.....++.+.+.++++..+++|+.+++.+++++.|.|++++.+   +|+++||..+.
T Consensus        74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~~ss~~~~  139 (252)
T PRK08220         74 TGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSG---AIVTVGSNAAH  139 (252)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC---EEEEECCchhc
Confidence            4789999999998777778888999999999999999999999999999876543   89999997654

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.88  E-value=3.3e-21  Score=145.22  Aligned_cols=134  Identities=30%  Similarity=0.419  Sum_probs=113.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      ++++||||+|+||.+++++|+++|++|++++|+++..++..+++    +.++..+.+|+++.+++++++++    ++++|
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   76 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNID   76 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----ccceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999999987766554433    34678899999999998887664    46899


Q ss_pred             EEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||... ..+..+.+.+++++.+++|+.+++.+++.+.|.|.+++.+   +|+++||.++..
T Consensus        77 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~isS~~~~~  139 (248)
T PRK10538         77 VLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG---HIINIGSTAGSW  139 (248)
T ss_pred             EEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---EEEEECCcccCC
Confidence            9999999754 3456678899999999999999999999999999876543   899999987653

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.5e-21  Score=146.36  Aligned_cols=136  Identities=23%  Similarity=0.354  Sum_probs=116.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +|+++||||+|+||++++++|+++|++|++++|+++..++..+... ..+.++..+.+|+++++++.+.++  +++|++|
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~--~~id~vi   78 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAA-RRGLALRVEKLDLTDAIDRAQAAE--WDVDVLL   78 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-hcCCcceEEEeeCCCHHHHHHHhc--CCCCEEE
Confidence            5789999999999999999999999999999999876665554433 234567888999999999887765  3799999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||||.....++.+.+.++++..+++|+.+++.+++.++|.+.+.+.+   +||++||..+..
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~~SS~~~~~  137 (257)
T PRK09291         79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKG---KVVFTSSMAGLI  137 (257)
T ss_pred             ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---eEEEEcChhhcc
Confidence            99998887788888999999999999999999999999999776543   999999987653

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.6e-21  Score=146.08  Aligned_cols=137  Identities=28%  Similarity=0.462  Sum_probs=114.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh----
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA----  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~----  109 (179)
                      +++++++||||+|+||+++|++|+++|++|++. .|+.++.++..+++.. .+.++..+.+|++|.+++.+++++.    
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~i~~~~~~~~~~~   82 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIES-NGGKAFLIEADLNSIDGVKKLVEQLKNEL   82 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence            568999999999999999999999999998775 6777666655555532 2456788999999999998877653    


Q ss_pred             ------CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 ------GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ------~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                            +++|++|||||.....++.+.+.+.|+..+++|+.+++++++.+.|.|.+.     ++++++||..+.
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~~v~~sS~~~~  151 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE-----GRVINISSAEVR  151 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-----CEEEEECCHHhc
Confidence                  469999999998777777788999999999999999999999999988543     289999998664

>PRK12742 oxidoreductase; Provisional

Probab=99.88  E-value=2.4e-21  Score=144.73  Aligned_cols=131  Identities=27%  Similarity=0.446  Sum_probs=109.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++|+++||||+|+||++++++|+++|++|++++++ ++..++..++.    +  +..+.+|+++.+++.+.+++.+++|
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~----~--~~~~~~D~~~~~~~~~~~~~~~~id   77 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET----G--ATAVQTDSADRDAVIDVVRKSGALD   77 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh----C--CeEEecCCCCHHHHHHHHHHhCCCc
Confidence            578999999999999999999999999999888764 44444332222    2  3567899999999999888888899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++|||||.....+..+.++++|+..+++|+.+++.+++.+.|.|.+.     +++|++||..+
T Consensus        78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----g~iv~isS~~~  135 (237)
T PRK12742         78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG-----GRIIIIGSVNG  135 (237)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-----CeEEEEecccc
Confidence            99999998766666778899999999999999999999999988532     28999999876

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.88  E-value=3.6e-21  Score=144.29  Aligned_cols=138  Identities=27%  Similarity=0.330  Sum_probs=113.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .|+++|||++++||+++|++|+++|++|++++|++++ .++..+... ..+.++.++.+|+++.+++++++++    .++
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYG-FTEDQVRLKELDVTDTEECAEALAEIEEEEGP   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhh-ccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999999999999999998542 222222221 2245688899999999998887655    478


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||+|.....++.+.+.++|+.++++|+.+++.+++.++|.|++.+.   ++||++||..+..
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~iss~~~~~  144 (245)
T PRK12824         81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGY---GRIINISSVNGLK  144 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC---eEEEEECChhhcc
Confidence            999999999887777778899999999999999999999999999987654   3999999987653

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=3.6e-21  Score=144.37  Aligned_cols=141  Identities=32%  Similarity=0.428  Sum_probs=119.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++|+++||||+|+||++++++|+++|++|+++ +|+++..++..+++.. .+.++..+.+|++++++++++++.    
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE-EGGDAIAVKADVSSEEDVENLVEQIVEK   80 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999998 8988776666665543 355688899999999998887654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .+++|++||++|.....++.+.+.+++++.+++|+.+++.+++.+.|.+.+++.   ++++++||..+..
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~v~~sS~~~~~  147 (247)
T PRK05565         81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKS---GVIVNISSIWGLI  147 (247)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---cEEEEECCHhhcc
Confidence            468999999999876666777889999999999999999999999999977654   3899999976543

>PRK07069 short chain dehydrogenase; Validated

Probab=99.88  E-value=2.7e-21  Score=145.55  Aligned_cols=136  Identities=33%  Similarity=0.394  Sum_probs=114.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcC-ceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATG-IEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      ++||||+++||++++++|+++|++|++++|+ .+..++..+++....+ ..+..+.+|+++.+++++++++    ++++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            7999999999999999999999999999998 6666666555543322 2355678999999998877654    57899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||.....++.+.+.+++++.+++|+.+++.+++.++|.|++++.+   +|+++||.++..
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~ii~~ss~~~~~  143 (251)
T PRK07069         82 VLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA---SIVNISSVAAFK  143 (251)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc---EEEEecChhhcc
Confidence            99999998877778888999999999999999999999999999876543   999999987653

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.88  E-value=3.3e-21  Score=163.26  Aligned_cols=144  Identities=28%  Similarity=0.397  Sum_probs=122.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcC-ceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG-IEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++....+ ..+..+.+|+++.+++++++++   
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~  489 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL  489 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999998887776666653322 3567789999999999887764   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||.....++.+.+.++|+..+++|+.+++.+++.++|.|++++.  .++||++||..+..
T Consensus       490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~--~g~IV~iSS~~a~~  558 (676)
T TIGR02632       490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGL--GGNIVFIASKNAVY  558 (676)
T ss_pred             hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCEEEEEeChhhcC
Confidence             578999999999877777888899999999999999999999999999987542  24899999987654

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.6e-21  Score=145.17  Aligned_cols=131  Identities=25%  Similarity=0.305  Sum_probs=108.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id~li  116 (179)
                      ++++||||+||||++++++|+++|++|++++|+++..++..+.     ..++..+.+|+++.+++++++++. ..+|.+|
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i   76 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ-----SANIFTLAFDVTDHPGTKAALSQLPFIPELWI   76 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh-----cCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence            7899999999999999999999999999999998766544332     235778899999999999998875 3479999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||||.....+..+.++++|++++++|+.+++++++.+.|.|.+.     ++++++||..+..
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~iv~isS~~~~~  133 (240)
T PRK06101         77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCG-----HRVVIVGSIASEL  133 (240)
T ss_pred             EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CeEEEEechhhcc
Confidence            99986543344457889999999999999999999999998532     2899999987654

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.88  E-value=5e-21  Score=143.95  Aligned_cols=139  Identities=32%  Similarity=0.495  Sum_probs=119.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||+|++|++++++|+++|++|++++|+.++.++..+++.. .+.++..+.+|+++.+++++++++    ++
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA-AGGKARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999999998776666665543 345688899999999999888765    46


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|++||++|.....++.+.+.++++..++.|+.+++.+.+.+.|.|.+++.   .+++++||..+.
T Consensus        83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~ii~~ss~~~~  146 (251)
T PRK12826         83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG---GRIVLTSSVAGP  146 (251)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC---cEEEEEechHhh
Confidence            8999999999887777778899999999999999999999999999977653   389999998764

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3.8e-21  Score=144.29  Aligned_cols=138  Identities=29%  Similarity=0.307  Sum_probs=116.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +++++|+++|||++++||+++++.|+++|++|++++|+++..++..++.      ....+.+|+++.+++++.++..+++
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~~   78 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET------GCEPLRLDVGDDAAIRAALAAAGAF   78 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------CCeEEEecCCCHHHHHHHHHHhCCC
Confidence            4568899999999999999999999999999999999987665443322      2456789999999999999888889


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||+|.....+..+.+.+++++.+++|+.+++.+++.+.+.+.+++.  .++|+++||..+..
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~  142 (245)
T PRK07060         79 DGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGR--GGSIVNVSSQAALV  142 (245)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CcEEEEEccHHHcC
Confidence            99999999877666667888999999999999999999999999875432  24899999986643

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.88  E-value=5.7e-21  Score=142.98  Aligned_cols=137  Identities=30%  Similarity=0.463  Sum_probs=114.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      |+++||||+++||++++++|+++|++|+++.| +++..++..++... .+.++..+.+|++++++++++++.    .+++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGA-LGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-hCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999888 55555544444432 245688899999999998887654    4789


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||+|...+.++.+.+.+++++.+++|+.+++.+++.+.|.|++.+.+   +|+++||..+..
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~iss~~~~~  142 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWG---RIINISSVNGQK  142 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEEcchhhcC
Confidence            999999998777777788999999999999999999999999999876543   899999987654

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.4e-21  Score=145.07  Aligned_cols=137  Identities=32%  Similarity=0.456  Sum_probs=117.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +++++||||+|+||++++++|+++|++|++++|++++.++..+++... +.++..+.+|+++.+++++++++    ++++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH-GGEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999999988777666655432 45788899999999998887764    4689


Q ss_pred             cEEEecCCCCCCCCcccC-CHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||+|.....++.+. +++++++.+++|+.+++.+++.+.|.|.++.    ++++++||..+..
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~----~~iv~~sS~~~~~  142 (263)
T PRK06181         80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASR----GQIVVVSSLAGLT  142 (263)
T ss_pred             CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC----CEEEEEecccccC
Confidence            999999998777777777 8999999999999999999999999987543    3899999987643

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.88  E-value=3.8e-21  Score=145.57  Aligned_cols=139  Identities=22%  Similarity=0.285  Sum_probs=111.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHH----cCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHhh----
Q 030328           39 HVFITGGSSGIGLALAHQAAK----EGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDEA----  109 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~----~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~~----  109 (179)
                      +++||||++|||+++|++|++    +|++|++++|+++..++..+++... .+.++..+.+|+++.+++++++++.    
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999997    7999999999998888877777542 3557888999999999998877653    


Q ss_pred             CC----CcEEEecCCCCCCC--CcccC-CHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GP----VDVLVVNQGVFVPG--ELEVQ-SLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~----id~li~~ag~~~~~--~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++    .|++|||||.....  ...+. +.++|++.+++|+.+++.+++.++|.|.+.. +..++|+++||.++..
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~-~~~~~iv~isS~~~~~  156 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSP-GLNRTVVNISSLCAIQ  156 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC-CCCCEEEEECCHHhCC
Confidence            22    26999999975432  23323 5789999999999999999999999997652 2234899999987754

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=2e-21  Score=145.03  Aligned_cols=130  Identities=29%  Similarity=0.360  Sum_probs=110.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++++|+++|||++++||++++++|+++|++|++++|++...          ...++..+.+|++++  ++++++..+++|
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~----------~~~~~~~~~~D~~~~--~~~~~~~~~~id   69 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD----------LSGNFHFLQLDLSDD--LEPLFDWVPSVD   69 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc----------cCCcEEEEECChHHH--HHHHHHhhCCCC
Confidence            36789999999999999999999999999999999975421          123577889999887  777788888999


Q ss_pred             EEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||... ..++.+.+.+++++.+++|+.+++.++++++|.|++++.+   +|+++||.++..
T Consensus        70 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~~sS~~~~~  132 (235)
T PRK06550         70 ILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSG---IIINMCSIASFV  132 (235)
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---EEEEEcChhhcc
Confidence            9999999754 3566778899999999999999999999999999876544   899999987654

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.88  E-value=5.6e-21  Score=143.03  Aligned_cols=136  Identities=29%  Similarity=0.447  Sum_probs=110.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCcE
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVDV  114 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id~  114 (179)
                      ++||||+++||+++|++|+++|++|++++|+. +..++..+++.. .+.++..+.+|+++.+++++++++    ++++|+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQA-QGGNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-cCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            58999999999999999999999999988754 445555555433 255788899999999998877654    578999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHc-HHHHhccCCCCcEEEEecccCcccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL-PLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|||+|.....++.+.+.++|+.++++|+.++++++++++ |.+++++.   ++|+++||.++..|
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~~iv~vsS~~~~~~  142 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQG---GRIITLASVSGVMG  142 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCC---eEEEEEcchhhccC
Confidence            9999998877777788999999999999999999999876 44444443   38999999876543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.88  E-value=9.8e-21  Score=142.11  Aligned_cols=140  Identities=25%  Similarity=0.358  Sum_probs=115.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      |+++||||+|+||++++++|+++|++|+++ .|+++..++...++.. .+.++..+.+|++|++++++++++    .+++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQ-AGGKAFVLQADISDENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh-CCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            689999999999999999999999999774 5666666655555543 355688899999999999888765    4789


Q ss_pred             cEEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||+|.. ...+..+.+.++++..+++|+.+++.+++.+++.|.++..+..++||++||.++..
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~  147 (247)
T PRK09730         81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRL  147 (247)
T ss_pred             CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcc
Confidence            9999999975 34556778899999999999999999999999999877554456899999987654

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.7e-21  Score=161.82  Aligned_cols=141  Identities=34%  Similarity=0.496  Sum_probs=119.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|.+++++++++    +
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~  446 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA-KGGTAHAYTCDLTDSAAVDHTVKDILAEH  446 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            56799999999999999999999999999999999999888877776643 356788899999999998887764    5


Q ss_pred             CCCcEEEecCCCCCCCCcccC--CHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQ--SLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||......+.+.  +.++++.++++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus       447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  514 (657)
T PRK07201        447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFG---HVVNVSSIGVQT  514 (657)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC---EEEEECChhhcC
Confidence            789999999997654443322  357899999999999999999999999877544   999999987653

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.88  E-value=8e-21  Score=141.76  Aligned_cols=139  Identities=29%  Similarity=0.375  Sum_probs=116.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+++|+++||||+|+||++++++|+++|++|++++|+++..++..+++..   ..+..+.+|++|.+++++++++    
T Consensus         3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (239)
T PRK12828          3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA---DALRIGGIDLVDPQAARRAVDEVNRQ   79 (239)
T ss_pred             CCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh---cCceEEEeecCCHHHHHHHHHHHHHH
Confidence            346799999999999999999999999999999999988766555554432   2356678999999998887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|++||++|.....++.+.+++++++.+++|+.+++.+++++.|.|.+++.   ++++++||..+.
T Consensus        80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~iv~~sS~~~~  145 (239)
T PRK12828         80 FGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGG---GRIVNIGAGAAL  145 (239)
T ss_pred             hCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCC---CEEEEECchHhc
Confidence            578999999999876666677789999999999999999999999999987654   399999997654

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.88  E-value=4.4e-21  Score=146.10  Aligned_cols=141  Identities=21%  Similarity=0.237  Sum_probs=107.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHH----HHHH----Hh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAV----KTAL----DE  108 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v----~~~~----~~  108 (179)
                      ++++||||++|||++++++|+++|++|++++|+ ++..++..+++....+.++..+.+|++|.+++    ++++    +.
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~   81 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA   81 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence            689999999999999999999999999988754 55666666666433345667789999998754    3333    33


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCH-----------HHHHHHHHhhhhHHHHHHHHHcHHHHhcc---CCCCcEEEEeccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSL-----------DEVRLMIDVNIIGSFHMIKAALPLIKKRQ---NGGPASIALMSSQ  174 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~-----------~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~~~~~iv~iss~  174 (179)
                      ++++|+||||||...+.++.+.+.           ++|.+++++|+.+++.+++.+.|.|....   .+....|++++|.
T Consensus        82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~  161 (267)
T TIGR02685        82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA  161 (267)
T ss_pred             cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence            578999999999766555443333           35889999999999999999999986542   1223589999988


Q ss_pred             Cccc
Q 030328          175 AGQV  178 (179)
Q Consensus       175 ~g~~  178 (179)
                      .+..
T Consensus       162 ~~~~  165 (267)
T TIGR02685       162 MTDQ  165 (267)
T ss_pred             hccC
Confidence            7643

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=1.2e-20  Score=142.23  Aligned_cols=135  Identities=26%  Similarity=0.389  Sum_probs=109.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++||||+++||+++|++|+++|++|+++++ +++..++...++    +.++..+.+|+++++++++++++    +
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL----GDRAIALQADVTDREQVQAMFATATEHF   78 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999988765 444444333322    35678889999999998887765    3


Q ss_pred             CC-CcEEEecCCCCC------CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GP-VDVLVVNQGVFV------PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~-id~li~~ag~~~------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++ +|++|||||...      ..++.+.+.+++++.+++|+.+++.+++.++|.|.+.+.+   +|+++||..+
T Consensus        79 g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~iss~~~  149 (253)
T PRK08642         79 GKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFG---RIINIGTNLF  149 (253)
T ss_pred             CCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCe---EEEEECCccc
Confidence            55 999999998632      2356778899999999999999999999999999765543   9999998754

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.87  E-value=1.3e-20  Score=141.14  Aligned_cols=140  Identities=32%  Similarity=0.473  Sum_probs=119.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+.+|+++||||+|++|++++++|+++|++|++++|++++.+....++.. .+.++.++.+|+++++++.+++++    .
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA-AGGEARVLVFDVSDEAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999998877666655543 356688889999999998887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++||++|.....+..+.+.++++..++.|+.+++.+++++.|.|.+.+.   .+|+++||..+.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~---~~ii~~ss~~~~  145 (246)
T PRK05653         81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARY---GRIVNISSVSGV  145 (246)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---cEEEEECcHHhc
Confidence            78999999999877767777889999999999999999999999999876553   399999997654

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.2e-20  Score=142.63  Aligned_cols=134  Identities=28%  Similarity=0.395  Sum_probs=115.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +|+++||||+|+||++++++|+++|++|++++|+.+..++..+++   .+.++..+.+|+++.+++.+.+++    .+++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL---GDARFVPVACDLTDAASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999999988776665554   245678899999999998776654    4679


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |++||++|.....++.+.++++|...+++|+.+++.+.+++.+.+.+++.+   +|+++||..+
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~---~iv~~sS~~~  139 (257)
T PRK07074         79 DVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRG---AVVNIGSVNG  139 (257)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe---EEEEEcchhh
Confidence            999999998776677778899999999999999999999999999776543   8999999754

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.1e-20  Score=141.89  Aligned_cols=140  Identities=36%  Similarity=0.547  Sum_probs=113.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC----hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS----GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~----~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      +++|+++||||+|+||+++|++|+++|++|++++|.    ++..++..+++.. .+.++.++.+|+++.++++++++.  
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEA-AGGKALGLAFDVRDFAATRAALDAGV   82 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            568999999999999999999999999999987764    3333333333322 355788899999999998887754  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHc-HHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL-PLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        .+++|++|||+|.....++.+.+.++|+..+++|+.+++.+++++. |.|++.+.   .+++++||..+..
T Consensus        83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~~iv~~sS~~~~~  152 (249)
T PRK12827         83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRG---GRIVNIASVAGVR  152 (249)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC---eEEEEECCchhcC
Confidence              4689999999998887788888999999999999999999999999 55554433   4899999987653

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.87  E-value=8.9e-21  Score=145.14  Aligned_cols=127  Identities=28%  Similarity=0.417  Sum_probs=105.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---hCCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---AGPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~~~id  113 (179)
                      +|+++|||| ||||+++|++|+ +|++|++++|+++..++..+++.. .+.++..+.+|++|.++++++++.   ++++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLRE-AGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            689999998 699999999996 899999999998877766666643 356788899999999999888765   47899


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||...       ..++|++++++|+.+++.+++.+.|.|.++  +   +++++||.++..
T Consensus        79 ~li~nAG~~~-------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--g---~iv~isS~~~~~  131 (275)
T PRK06940         79 GLVHTAGVSP-------SQASPEAILKVDLYGTALVLEEFGKVIAPG--G---AGVVIASQSGHR  131 (275)
T ss_pred             EEEECCCcCC-------chhhHHHHHHHhhHHHHHHHHHHHHHHhhC--C---CEEEEEeccccc
Confidence            9999999642       236789999999999999999999999643  2   678889887653

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.87  E-value=2.1e-20  Score=140.16  Aligned_cols=140  Identities=34%  Similarity=0.438  Sum_probs=115.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +.+|+++|||++|++|++++++|+++|++|+++.|+.++ .+...+++. ..+.++..+.+|+++.+++.+++++    +
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIG-ALGGKALAVQGDVSDAESVERAVDEAKAEF   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH-hcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999888876553 444444443 2356788889999999998887765    3


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++||++|.....+..+.+.+.+++.+++|+.+++.+.+++.|.+.+.+.+   +++++||.++..
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~~v~iss~~~~~  147 (248)
T PRK05557         82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSG---RIINISSVVGLM  147 (248)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe---EEEEEcccccCc
Confidence            689999999998777777778899999999999999999999999998765433   899999986543

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.5e-20  Score=142.38  Aligned_cols=136  Identities=24%  Similarity=0.364  Sum_probs=108.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh----hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG----EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~----~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .+++|+++||||+++||.++|++|+++|++|++++++.    +..++..+++.. .+.++..+++|+++++++++++++ 
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~   83 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKA-AGAKAVAFQADLTTAAAVEKLFDDA   83 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHH-hCCcEEEEecCcCCHHHHHHHHHHH
Confidence            35789999999999999999999999999977766543    233334444432 245688899999999999887765 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEe-cccC
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALM-SSQA  175 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~i-ss~~  175 (179)
                         ++++|++|||||.....++.+.+.+++++++++|+.+++.+++.+.|.|++.  +   +++++ ||..
T Consensus        84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~---~iv~~~ss~~  149 (257)
T PRK12744         84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDN--G---KIVTLVTSLL  149 (257)
T ss_pred             HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccC--C---CEEEEecchh
Confidence               4789999999998776777788999999999999999999999999998643  2   45554 5543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.87  E-value=2e-20  Score=141.02  Aligned_cols=137  Identities=30%  Similarity=0.390  Sum_probs=116.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +|++|||||+|++|++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|+++.++++++++.    .+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD-AGGSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999999999999999999998877766665543 245688899999999998877654    4679


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |++||++|.....+..+.++++++..++.|+.+++.++++++|.|++.+.   .+++++||.++.
T Consensus        80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~---~~~v~~ss~~~~  141 (255)
T TIGR01963        80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGW---GRIINIASAHGL  141 (255)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC---eEEEEEcchhhc
Confidence            99999999877767777889999999999999999999999999977654   389999987654

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.87  E-value=7.7e-21  Score=141.32  Aligned_cols=125  Identities=18%  Similarity=0.267  Sum_probs=103.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCcEEEe
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVDVLVV  117 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id~li~  117 (179)
                      +++||||++|||++++++|+++|++|++++|+++++++..+++      .+..+.+|+++++++++++++. +++|++||
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~   75 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL------DVDAIVCDNTDPASLEEARGLFPHHLDTIVN   75 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc------cCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence            5899999999999999999999999999999988776655443      2456789999999999988775 36999999


Q ss_pred             cCCCCCC------CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          118 NQGVFVP------GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       118 ~ag~~~~------~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+|....      .++.+ ++++|++++++|+.+++++++.++|.|++  +   ++||++||.+
T Consensus        76 ~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~---g~Iv~isS~~  133 (223)
T PRK05884         76 VPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS--G---GSIISVVPEN  133 (223)
T ss_pred             CCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C---CeEEEEecCC
Confidence            9985321      12333 57899999999999999999999999964  2   3899999865

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.87  E-value=9.4e-21  Score=142.76  Aligned_cols=132  Identities=19%  Similarity=0.238  Sum_probs=99.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .++++|+++||||++|||++++++|+++|++|++++|++.+..+  ...  . +. ...+.+|+++.+++++.   .+++
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~--~~~--~-~~-~~~~~~D~~~~~~~~~~---~~~i   80 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE--SND--E-SP-NEWIKWECGKEESLDKQ---LASL   80 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh--hhc--c-CC-CeEEEeeCCCHHHHHHh---cCCC
Confidence            35789999999999999999999999999999999998632111  111  1 11 24678999999887654   4579


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |++|||||....   .+.++++|++.+++|+.+++.++|.++|.|++++.++...+++.||.++
T Consensus        81 DilVnnAG~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~  141 (245)
T PRK12367         81 DVLILNHGINPG---GRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAE  141 (245)
T ss_pred             CEEEECCccCCc---CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccc
Confidence            999999997432   3467899999999999999999999999997643211223444455544

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=2.8e-20  Score=140.03  Aligned_cols=138  Identities=33%  Similarity=0.498  Sum_probs=115.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh----C
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA----G  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~----~  110 (179)
                      +++++++|||++++||.+++++|+++|++|++++|++++.++..+++... +.++..+.+|+++.++++++++..    +
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL-GTEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999988777766665432 567888999999999988877653    6


Q ss_pred             CCcEEEecCCCCCCCCc---------ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          111 PVDVLVVNQGVFVPGEL---------EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~---------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++|++|||+|.......         .+.+.++++.++++|+.+++.+.+.+.|.|.++..  ...|+++||..
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~--~~~iv~~ss~~  153 (253)
T PRK08217         82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGS--KGVIINISSIA  153 (253)
T ss_pred             CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--CeEEEEEcccc
Confidence            89999999997553221         56788999999999999999999999999976532  24789998864

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=2.9e-20  Score=139.37  Aligned_cols=139  Identities=37%  Similarity=0.539  Sum_probs=114.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh----
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA----  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~----  109 (179)
                      +++|+++||||+|++|++++++|+++|++|++..|+.+ ..+...+.+. ..+.++..+.+|+++++++++++++.    
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVE-ALGRRAQAVQADVTDKAALEAAVAAAVERF   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH-hcCCceEEEECCcCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999999999888676654 3333433333 23556888999999999998887653    


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++||++|.....++.+.+.++++..+++|+.+++.+++.+.|.+.+.+.   .+++++||..+.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~i~~SS~~~~  147 (249)
T PRK12825         83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRG---GRIVNISSVAGL  147 (249)
T ss_pred             CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---CEEEEECccccC
Confidence            68999999999877777778889999999999999999999999999877653   399999998764

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2e-20  Score=141.83  Aligned_cols=139  Identities=35%  Similarity=0.512  Sum_probs=115.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+|+||++++++|+++|++|++++|+++..++..++..   +.++..+.+|+++++++++++++    .
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP---GAKVTATVADVADPAQVERVFDTAVERF   84 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh---cCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999998876665544442   22567889999999998887765    4


Q ss_pred             CCCcEEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++||++|.. ...+..+.+.++++..+++|+.+++.+++.+.+.+.+.+.  ..+++++||.++.
T Consensus        85 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~vv~~ss~~~~  151 (264)
T PRK12829         85 GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGH--GGVIIALSSVAGR  151 (264)
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--CeEEEEecccccc
Confidence            7899999999987 4455667889999999999999999999999998876543  1479999887654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=3.1e-20  Score=139.87  Aligned_cols=139  Identities=25%  Similarity=0.285  Sum_probs=113.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++++++||||+|+||++++++|+++|+++++..++ .+..+...+.+.. .+.++..+.+|+++++++++++++    
T Consensus         3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (252)
T PRK06077          3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKE-NGGEGIGVLADVSTREGCETLAKATIDR   81 (252)
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHH-cCCeeEEEEeccCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999998877654 3444433333332 245677889999999998777665    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .+++|++|||||.....++.+.+.+.++..+++|+.+++.+++++.|.|++.     ++|+++||.++..
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-----~~iv~~sS~~~~~  146 (252)
T PRK06077         82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-----GAIVNIASVAGIR  146 (252)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-----cEEEEEcchhccC
Confidence            4789999999998777777778889999999999999999999999998652     2899999987653

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.87  E-value=2.2e-20  Score=140.71  Aligned_cols=137  Identities=39%  Similarity=0.584  Sum_probs=112.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH--HHHHHHHHHhhcC-ceEEEEEeeCCC-HHHHHHHHHh-
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK--LEEAKQSIQLATG-IEVATYSADVRD-FDAVKTALDE-  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~-~~v~~~~~D~~~-~~~v~~~~~~-  108 (179)
                      .+.+|+++||||++|||+++|++|+++|++|+++.++.+.  .+...+... ..+ ..+....+|+++ .++++.+++. 
T Consensus         2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dvs~~~~~v~~~~~~~   80 (251)
T COG1028           2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK-EAGGGRAAAVAADVSDDEESVEALVAAA   80 (251)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH-hcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999998888887654  333333333 222 367778899998 8888776654 


Q ss_pred             ---hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 ---AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                         +|++|++|||||.... .++.+.+.++|+..+++|+.+++.+++.+.|.++++      +|+++||..+.
T Consensus        81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~------~Iv~isS~~~~  147 (251)
T COG1028          81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ------RIVNISSVAGL  147 (251)
T ss_pred             HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC------eEEEECCchhc
Confidence               5789999999999887 488889999999999999999999999888887721      99999998764

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.2e-20  Score=140.55  Aligned_cols=129  Identities=33%  Similarity=0.485  Sum_probs=110.2

Q ss_pred             EEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecCC
Q 030328           41 FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQG  120 (179)
Q Consensus        41 lItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~ag  120 (179)
                      +||||+++||++++++|+++|++|++++|+++..++..+++.  .+.++.++.+|+++.+++++++++.+++|++|||+|
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag   78 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG--GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAA   78 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            699999999999999999999999999999877766655553  245678899999999999999998889999999999


Q ss_pred             CCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          121 VFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .....++.+.+.+++++++++|+.+++.+++  .+.+.  +   .++|+++||.++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~--~---~g~iv~~ss~~~~~  129 (230)
T PRK07041         79 DTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIA--P---GGSLTFVSGFAAVR  129 (230)
T ss_pred             CCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhc--C---CeEEEEECchhhcC
Confidence            8777777788999999999999999999999  34442  2   23999999987653

>PRK06720 hypothetical protein; Provisional

Probab=99.86  E-value=3.5e-20  Score=131.99  Aligned_cols=142  Identities=20%  Similarity=0.237  Sum_probs=111.5

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----  107 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----  107 (179)
                      .+.+++|+++||||++|||.++|+.|+++|++|++++|+++..++..+++.. .+.+...+.+|+++.++++++++    
T Consensus        11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~v~~~~~   89 (169)
T PRK06720         11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN-LGGEALFVSYDMEKQGDWQRVISITLN   89 (169)
T ss_pred             ccccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999998877766666653 34567778999999999877654    


Q ss_pred             hhCCCcEEEecCCCCCCC-CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC----CCcEEEEecccCcc
Q 030328          108 EAGPVDVLVVNQGVFVPG-ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG----GPASIALMSSQAGQ  177 (179)
Q Consensus       108 ~~~~id~li~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~----~~~~iv~iss~~g~  177 (179)
                      .++++|++|||||..... ++.+.++++ ++  .+|+.+++..++.+.+.|.+++..    +.+++..+||.+..
T Consensus        90 ~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (169)
T PRK06720         90 AFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS  161 (169)
T ss_pred             HcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence            468999999999987643 444434444 33  777788888899999998876532    55689999887643

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.86  E-value=9.3e-21  Score=138.36  Aligned_cols=116  Identities=18%  Similarity=0.310  Sum_probs=103.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||++|||++++++|+++ ++|++++|+..                  .+.+|+++++++++++++.+++|++|||
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~------------------~~~~D~~~~~~~~~~~~~~~~id~lv~~   62 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG------------------DVQVDITDPASIRALFEKVGKVDAVVSA   62 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC------------------ceEecCCChHHHHHHHHhcCCCCEEEEC
Confidence            6999999999999999999999 99999998752                  2578999999999999988899999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||.....++.+.++++|++.+++|+.+++++++.+.|.|.+.     ++|+++||..+..
T Consensus        63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----g~iv~iss~~~~~  117 (199)
T PRK07578         63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDG-----GSFTLTSGILSDE  117 (199)
T ss_pred             CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CeEEEEcccccCC
Confidence            998777778788999999999999999999999999999642     2899999987753

>PRK09135 pteridine reductase; Provisional

Probab=99.86  E-value=3.9e-20  Score=138.94  Aligned_cols=138  Identities=24%  Similarity=0.317  Sum_probs=112.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++++++||||+|+||++++++|+++|++|++++|+. +..++..+.+....+..+..+.+|+++.+++.++++.    .
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4678999999999999999999999999999999864 3444444444433344577889999999998887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|++||+||.....++.+.+.++++..+++|+.+++.+++++.|.+.++.    +.++++++..+
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~----~~~~~~~~~~~  146 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQR----GAIVNITDIHA  146 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCC----eEEEEEeChhh
Confidence            6899999999987777777778899999999999999999999999887653    27787776543

>PRK08324 short chain dehydrogenase; Validated

Probab=99.86  E-value=4.2e-20  Score=157.04  Aligned_cols=141  Identities=30%  Similarity=0.425  Sum_probs=121.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+.+|+++||||+|+||++++++|+++|++|++++|+++..++..+++...  .++..+.+|+++.+++++++++    +
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            357899999999999999999999999999999999988777666655432  4678899999999998877664    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.+.++|+..+++|+.+++.+++.+.|.|++++.  .++|+++||..+..
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~--~g~iV~vsS~~~~~  563 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGL--GGSIVFIASKNAVN  563 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CcEEEEECCccccC
Confidence            78999999999988888888999999999999999999999999999987553  14999999987654

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.86  E-value=1.6e-20  Score=140.99  Aligned_cols=128  Identities=38%  Similarity=0.523  Sum_probs=111.1

Q ss_pred             cCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h-CCCcEEE
Q 030328           44 GGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A-GPVDVLV  116 (179)
Q Consensus        44 Ga~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~-~~id~li  116 (179)
                      |++  +|||+++|++|+++|++|++++|+.++.+...+++....+.+  .+.+|+++++++++++++    + +++|++|
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV   78 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE--VIQCDLSDEESVEALFDEAVERFGGRIDILV   78 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE--EEESCTTSHHHHHHHHHHHHHHHCSSESEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc--eEeecCcchHHHHHHHHHHHhhcCCCeEEEE
Confidence            566  999999999999999999999999998777777776665655  499999999999887654    6 8999999


Q ss_pred             ecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          117 VNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       117 ~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||+|....    .++.+.+.++|++.+++|+.+++.++|++.|.|.+.     ++||++||.++..
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gsii~iss~~~~~  139 (241)
T PF13561_consen   79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG-----GSIINISSIAAQR  139 (241)
T ss_dssp             EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE-----EEEEEEEEGGGTS
T ss_pred             ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCcccccchhhcc
Confidence            99998765    678888999999999999999999999999988775     2899999987643

...

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.85  E-value=3.4e-20  Score=139.23  Aligned_cols=132  Identities=25%  Similarity=0.277  Sum_probs=108.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-----h---
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-----A---  109 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-----~---  109 (179)
                      ++++||||+|+||++++++|+++|++|++++|+.+..  .    ....+.++..+.+|+++.+++++++++     +   
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   75 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L----AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG   75 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h----hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence            4799999999999999999999999999999986531  1    112345688899999999999885543     2   


Q ss_pred             CCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||+|.... .++.+.+.++++..+++|+.+++.+++.+.|.|.+++.+   +|+++||..+..
T Consensus        76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~---~iv~isS~~~~~  142 (243)
T PRK07023         76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAER---RILHISSGAARN  142 (243)
T ss_pred             CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCC---EEEEEeChhhcC
Confidence            378999999997654 466678899999999999999999999999999875443   999999987653

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=8.7e-20  Score=148.54  Aligned_cols=136  Identities=24%  Similarity=0.350  Sum_probs=111.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh--hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG--EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++|||++++||++++++|+++|++|++++++.  +..++..+++    +  ...+.+|+++.++++++++.   
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~----~--~~~~~~Dv~~~~~~~~~~~~~~~  280 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV----G--GTALALDITAPDAPARIAEHLAE  280 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc----C--CeEEEEeCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999998853  2233222221    2  34678999999998887764   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||......+.+.++++|+.++++|+.+++++.+.+.+.+..++.   ++||++||.++..
T Consensus       281 ~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~---g~iv~~SS~~~~~  348 (450)
T PRK08261        281 RHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDG---GRIVGVSSISGIA  348 (450)
T ss_pred             hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCC---CEEEEECChhhcC
Confidence             468999999999888778888999999999999999999999999996544433   3999999987654

>PRK08017 oxidoreductase; Provisional

Probab=99.85  E-value=1e-19  Score=137.47  Aligned_cols=132  Identities=28%  Similarity=0.380  Sum_probs=110.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-----CC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-----GP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-----~~  111 (179)
                      .|+++||||+|+||++++++|+++|++|++++|++++.+...+       ..+..+.+|+++.+++++++++.     ++
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~   74 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS-------LGFTGILLDLDDPESVERAADEVIALTDNR   74 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh-------CCCeEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            3689999999999999999999999999999999876543321       12567889999999987776653     57


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|.++||+|.....++.+.+.+++++.+++|+.|++.+++.++|.|.+.+.+   +|+++||.++..
T Consensus        75 ~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~---~iv~~ss~~~~~  138 (256)
T PRK08017         75 LYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEG---RIVMTSSVMGLI  138 (256)
T ss_pred             CeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC---EEEEEcCccccc
Confidence            8999999998766677788999999999999999999999999999876543   899999987654

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.85  E-value=5.2e-20  Score=137.51  Aligned_cols=127  Identities=24%  Similarity=0.282  Sum_probs=104.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      |+++||||++|||+++|++|+++|  ..+++.+|+....         ..+.++.++++|+++.++++++.++++++|++
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~l   71 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD---------FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWL   71 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc---------cccCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            479999999999999999999985  5566666654321         11346788999999999999988888899999


Q ss_pred             EecCCCCCC------CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          116 VVNQGVFVP------GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       116 i~~ag~~~~------~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |||||....      .++.+.+.+.|+..+++|+.+++.+++.++|.|++.+.+   +++++||..|
T Consensus        72 i~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~---~i~~iss~~~  135 (235)
T PRK09009         72 INCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESA---KFAVISAKVG  135 (235)
T ss_pred             EECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCc---eEEEEeeccc
Confidence            999998742      346678889999999999999999999999999765433   8999988655

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.84  E-value=1.8e-19  Score=143.89  Aligned_cols=130  Identities=22%  Similarity=0.341  Sum_probs=103.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++++|+++||||+||||++++++|+++|++|++++|++++.++..+    .....+..+.+|++|.+++.+.+   +++|
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~----~~~~~v~~v~~Dvsd~~~v~~~l---~~ID  247 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEIN----GEDLPVKTLHWQVGQEAALAELL---EKVD  247 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----hcCCCeEEEEeeCCCHHHHHHHh---CCCC
Confidence            4578999999999999999999999999999999998765543221    11234667889999998877655   4799


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC-CCcEEEEecc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG-GPASIALMSS  173 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~~~iv~iss  173 (179)
                      ++|||||....   .+.+.|++++.+++|+.|++.+++.++|.|++++.+ ....++++|+
T Consensus       248 iLInnAGi~~~---~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss  305 (406)
T PRK07424        248 ILIINHGINVH---GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE  305 (406)
T ss_pred             EEEECCCcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence            99999997543   356889999999999999999999999999876532 2345677765

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.7e-19  Score=133.80  Aligned_cols=130  Identities=25%  Similarity=0.419  Sum_probs=107.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~l  115 (179)
                      |+++|||++++||++++++|+++|++|++++|+++..++...       ..+..+.+|+++.+++++++++.  +++|++
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v   74 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA-------LGAEALALDVADPASVAGLAWKLDGEALDAA   74 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh-------ccceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence            689999999999999999999999999999999776544321       12457899999999999887654  369999


Q ss_pred             EecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          116 VVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       116 i~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |||+|....  .+..+.+.++++..+++|+.+++.+++++.|.|.+..    ++++++||.++..
T Consensus        75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~----g~iv~isS~~~~~  135 (222)
T PRK06953         75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAG----GVLAVLSSRMGSI  135 (222)
T ss_pred             EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccC----CeEEEEcCccccc
Confidence            999998642  3455678999999999999999999999999886532    3899999987644

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.84  E-value=7.6e-20  Score=135.93  Aligned_cols=130  Identities=25%  Similarity=0.349  Sum_probs=108.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~l  115 (179)
                      |+++||||++++|++++++|+++|++|++++|++++.++..+ .     .++....+|++|+++++++++..  +++|++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~-----~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v   75 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA-L-----PGVHIEKLDMNDPASLDQLLQRLQGQRFDLL   75 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh-c-----cccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence            789999999999999999999999999999999876543321 1     24567789999999999888764  479999


Q ss_pred             EecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          116 VVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       116 i~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |||||...+  .++.+.+.++++..+++|+.+++.+++.+.|.|++..    +.++++||..|.
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~----~~iv~~ss~~g~  135 (225)
T PRK08177         76 FVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQ----GVLAFMSSQLGS  135 (225)
T ss_pred             EEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcC----CEEEEEccCccc
Confidence            999998643  3566788999999999999999999999999886432    389999987664

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.84  E-value=2.4e-19  Score=133.91  Aligned_cols=135  Identities=36%  Similarity=0.522  Sum_probs=111.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCcE
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVDV  114 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id~  114 (179)
                      ++|||++++||++++++|+++|++|++++|+. +..++..+.+. ..+.++..+.+|+++.+++++++++    .+++|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELK-AYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH-hcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            58999999999999999999999999999875 34444444443 2355688899999999998887765    378999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +||++|.....++.+.+.+++++.+++|+.+++.+++.+.+.+.+.+.   ++++++||.++..
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~v~~sS~~~~~  140 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRS---GRIINISSVVGLM  140 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---eEEEEECCccccC
Confidence            999999876666667788999999999999999999999999876543   3899999987654

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=134.94  Aligned_cols=125  Identities=30%  Similarity=0.429  Sum_probs=106.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh---CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA---GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~---~~i  112 (179)
                      .+|+++||||+++||++++++|+++|++|++++|+.+..      .    .  ..++.+|+++.+++++++++.   .++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~----~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   69 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD------F----P--GELFACDLADIEQTAATLAQINEIHPV   69 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc------c----C--ceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999999999986530      0    1  145789999999988776642   368


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |++|||+|.....++.+.+.+++++.+++|+.+++.+.+.++|.|++.+.   ++|+++||..
T Consensus        70 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~~sS~~  129 (234)
T PRK07577         70 DAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQ---GRIVNICSRA  129 (234)
T ss_pred             cEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEEcccc
Confidence            99999999887777778899999999999999999999999999987654   3899999975

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.5e-19  Score=132.83  Aligned_cols=131  Identities=28%  Similarity=0.481  Sum_probs=112.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +|+++||||+|++|++++++|+++ ++|++++|+.+..++..++.     ..+.++.+|++|.++++++++..+++|++|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   76 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL-----PGATPFPVDLTDPEAIAAAVEQLGRLDVLV   76 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh-----ccceEEecCCCCHHHHHHHHHhcCCCCEEE
Confidence            579999999999999999999999 99999999976654443322     246778999999999999998877899999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |++|.....++.+.+++++++.+++|+.+++.+++.+++.+++..    ++++++||..+.
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~----~~~v~~ss~~~~  133 (227)
T PRK08219         77 HNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH----GHVVFINSGAGL  133 (227)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC----CeEEEEcchHhc
Confidence            999987766777788999999999999999999999999887753    389999987764

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.83  E-value=4.6e-19  Score=128.13  Aligned_cols=142  Identities=28%  Similarity=0.385  Sum_probs=109.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHc-CCeEE-EEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-----
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKE-GARVS-ILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-----  109 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~-g~~v~-~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-----  109 (179)
                      -|.++||||++|||..++++|.+. |-.++ ...|+++.+.+..+.. .....+++.++.|+++.++++.+.++.     
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k-~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg   81 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALK-SKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG   81 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHh-hccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence            456999999999999999999964 55554 4556666642222211 123578999999999999998887763     


Q ss_pred             -CCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC--------CCcEEEEecccCcccC
Q 030328          110 -GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG--------GPASIALMSSQAGQVG  179 (179)
Q Consensus       110 -~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--------~~~~iv~iss~~g~~g  179 (179)
                       .++++++||||.... ....+.+.+.|.+++++|+.|++.++|+++|.+++....        .+..|+|+||.+|.+|
T Consensus        82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~  161 (249)
T KOG1611|consen   82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG  161 (249)
T ss_pred             cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC
Confidence             368999999998764 344456788899999999999999999999999876532        3457999999988653

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.83  E-value=6.6e-19  Score=131.65  Aligned_cols=134  Identities=30%  Similarity=0.425  Sum_probs=109.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+|+||.+++++|+++|++|++++|+++..++..+++..  ...+..+.+|+++.+++++++++    +
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK--YGNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999998877665554432  23577889999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|.+++++|.....+..  +.++++..+++|+.+++.+.+.++|.|.+.     ++++++||..+
T Consensus        80 ~~id~ii~~ag~~~~~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-----~~iv~~ss~~~  139 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVE--EFSGLEEMLTNHIKIPLYAVNASLRFLKEG-----SSIVLVSSMSG  139 (238)
T ss_pred             CCCCEEEEcCCCcCCCchH--HHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----CEEEEEecchh
Confidence            6789999999875543333  348899999999999999999999988542     28999998765

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.83  E-value=3.3e-19  Score=134.33  Aligned_cols=134  Identities=24%  Similarity=0.351  Sum_probs=107.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh----C--
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA----G--  110 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~----~--  110 (179)
                      |+++||||+|+||++++++|+++|++|++++|++ +..++    +....+.++..+.+|+++.+++++++++.    +  
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTK----LAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQED   77 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHH----HHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence            6899999999999999999999999999999986 33332    22223456788999999999998887653    2  


Q ss_pred             CC--cEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PV--DVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~i--d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++  +++|+|+|...+ .++.+.+.++|++.+++|+.+++.+++.++|.|++.+.  .++|+++||..+.
T Consensus        78 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~  145 (251)
T PRK06924         78 NVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKV--DKRVINISSGAAK  145 (251)
T ss_pred             cCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCC--CceEEEecchhhc
Confidence            12  279999997543 46778899999999999999999999999999976432  2489999997654

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.4e-18  Score=130.62  Aligned_cols=130  Identities=24%  Similarity=0.351  Sum_probs=101.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +.+|+++||||+|+||++++++|+++|++|++++|+.+ ..+....++.. .+.++..+.+|+++++++++++++    +
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA-AGGRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999998754 34444444433 245678899999999998887764    3


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|++|||||......      .+++..+++|+.+++.+++.+.|.|.+  .   +++|++||..+
T Consensus        83 ~~~d~vi~~ag~~~~~~------~~~~~~~~vn~~~~~~l~~~~~~~~~~--~---~~iv~isS~~~  138 (248)
T PRK07806         83 GGLDALVLNASGGMESG------MDEDYAMRLNRDAQRNLARAALPLMPA--G---SRVVFVTSHQA  138 (248)
T ss_pred             CCCcEEEECCCCCCCCC------CCcceeeEeeeHHHHHHHHHHHhhccC--C---ceEEEEeCchh
Confidence            67999999998643211      124567899999999999999998853  2   28999998543

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=4.3e-19  Score=123.58  Aligned_cols=142  Identities=32%  Similarity=0.439  Sum_probs=117.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~  109 (179)
                      ..+|-+.+|||+.+|+|++.|.+|+++|+.|++.|-.....++..+++    |.++.+.++|++++.++...+.    ++
T Consensus         6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel----g~~~vf~padvtsekdv~aala~ak~kf   81 (260)
T KOG1199|consen    6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL----GGKVVFTPADVTSEKDVRAALAKAKAKF   81 (260)
T ss_pred             hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh----CCceEEeccccCcHHHHHHHHHHHHhhc
Confidence            357889999999999999999999999999999999887777666665    6789999999999999887654    47


Q ss_pred             CCCcEEEecCCCCCCC------CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhc---cCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPG------ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKR---QNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~------~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|.++||||.....      .-...+-|++++++++|+.|+|+..+.....|.+.   +.|.++.|||..|++.+-|
T Consensus        82 grld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg  160 (260)
T KOG1199|consen   82 GRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG  160 (260)
T ss_pred             cceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC
Confidence            9999999999975321      12235789999999999999999998888887543   3456779999999987644

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.78  E-value=5.6e-18  Score=157.60  Aligned_cols=136  Identities=24%  Similarity=0.310  Sum_probs=110.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChh------------------------------------------
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGE------------------------------------------   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~------------------------------------------   72 (179)
                      +++++|||||++|||.++|++|+++ |++|++++|+..                                          
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            5899999999999999999999998 699999999820                                          


Q ss_pred             -----HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh---CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhh
Q 030328           73 -----KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII  144 (179)
Q Consensus        73 -----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~---~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~  144 (179)
                           +.++..+++ ...|.++.++.+|++|.+++++++++.   +++|++|||||....+.+.+.+.++|++++++|+.
T Consensus      2076 ~~~~~ei~~~la~l-~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813      2076 VLSSLEIAQALAAF-KAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred             cchhHHHHHHHHHH-HhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence                 011111122 124677889999999999998887653   57999999999988888899999999999999999


Q ss_pred             HHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       145 ~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++++++++.+.+.       ..||++||++|..|
T Consensus      2155 G~~~Ll~al~~~~~-------~~IV~~SSvag~~G 2182 (2582)
T TIGR02813      2155 GLLSLLAALNAENI-------KLLALFSSAAGFYG 2182 (2582)
T ss_pred             HHHHHHHHHHHhCC-------CeEEEEechhhcCC
Confidence            99999988755321       27999999998765

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.78  E-value=8.2e-18  Score=119.50  Aligned_cols=133  Identities=29%  Similarity=0.413  Sum_probs=105.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHH---HHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAK---QSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      |+++||||+++||.+++++|+++|+ .|++++|+++..+...   +++. ..+.++..+.+|+++++++++++++    .
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELE-ALGAEVTVVACDVADRAALAAALAAIPARL   79 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHH-hcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999997 5788888765433222   2232 2356778899999999998877665    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|.+||++|.....++.+.+.++++..+++|+.+++.+.+.+.+    .   +..+++++||..+..
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~~~~ii~~ss~~~~~  141 (180)
T smart00822       80 GPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD----L---PLDFFVLFSSVAGVL  141 (180)
T ss_pred             CCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc----C---CcceEEEEccHHHhc
Confidence            7899999999987766777889999999999999999999998732    2   234899999976643

It uses NADPH to reduce the keto group to a hydroxy group.

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.78  E-value=9.8e-18  Score=120.89  Aligned_cols=133  Identities=31%  Similarity=0.451  Sum_probs=98.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh----C
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-RVSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA----G  110 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~----~  110 (179)
                      +++|||+.|+||..++++|+++|+ +++++.|+..   +.++..+++.. .+.++.++.+|++|++++.+++++.    +
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~-~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~   80 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELES-AGARVEYVQCDVTDPEAVAAALAQLRQRFG   80 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHH-TT-EEEEEE--TTSHHHHHHHHHTSHTTSS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHh-CCCceeeeccCccCHHHHHHHHHHHHhccC
Confidence            789999999999999999999985 5899999832   33444555544 3789999999999999999998763    6


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++.+||.||...+.++.+.++++++.++...+.|..++.+.+.+       .+...++.+||+++..|
T Consensus        81 ~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~-------~~l~~~i~~SSis~~~G  142 (181)
T PF08659_consen   81 PIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN-------RPLDFFILFSSISSLLG  142 (181)
T ss_dssp             -EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT-------TTTSEEEEEEEHHHHTT
T ss_pred             CcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc-------CCCCeEEEECChhHhcc
Confidence            899999999998888999999999999999999999999887744       23459999999987765

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.72  E-value=9.6e-17  Score=125.41  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=98.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+..++........ ...++.++.+|+++.++++++++   ++|+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---~~d~   80 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID---GCET   80 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc---CCCE
Confidence            4789999999999999999999999999999888876544332222111 12457888999999999888876   5899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +||+||....    ..+.+.+...+++|+.+++++++++.+.+   +   ..+||++||.++.
T Consensus        81 vih~A~~~~~----~~~~~~~~~~~~~n~~g~~~ll~a~~~~~---~---~~~iv~~SS~~~~  133 (325)
T PLN02989         81 VFHTASPVAI----TVKTDPQVELINPAVNGTINVLRTCTKVS---S---VKRVILTSSMAAV  133 (325)
T ss_pred             EEEeCCCCCC----CCCCChHHHHHHHHHHHHHHHHHHHHHcC---C---ceEEEEecchhhe
Confidence            9999996432    22345577889999999999999886642   1   2389999997653

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.71  E-value=4.8e-16  Score=122.76  Aligned_cols=128  Identities=14%  Similarity=0.150  Sum_probs=98.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++||+++||||+|+||++++++|+++|++|++++|+.+........+.  .+.++..+.+|+++.+++.+++++. ++|+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~   78 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN--LAKKIEDHFGDIRDAAKLRKAIAEF-KPEI   78 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh--hcCCceEEEccCCCHHHHHHHHhhc-CCCE
Confidence            468999999999999999999999999999999998765443333222  1235667899999999999998865 5899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +||+|+....    ..+.+++...+++|+.++..+++++.+    .+  ...++|++||.+
T Consensus        79 vih~A~~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~--~~~~iv~~SS~~  129 (349)
T TIGR02622        79 VFHLAAQPLV----RKSYADPLETFETNVMGTVNLLEAIRA----IG--SVKAVVNVTSDK  129 (349)
T ss_pred             EEECCccccc----ccchhCHHHHHHHhHHHHHHHHHHHHh----cC--CCCEEEEEechh
Confidence            9999985322    234456778899999999999998632    11  124899999864

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.68  E-value=1.3e-15  Score=112.01  Aligned_cols=139  Identities=24%  Similarity=0.354  Sum_probs=112.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-----CeEEEEecChhHHHHHHHHHHhhc---CceEEEEEeeCCCHHHHHHHH-
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-----ARVSILARSGEKLEEAKQSIQLAT---GIEVATYSADVRDFDAVKTAL-  106 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-----~~v~~~~r~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~~~~-  106 (179)
                      .-|+++|||+++|+|.++|.+|.+..     .++.+++|+.+++++..+.+..-.   ..++.+...|+++..++.+.. 
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            35899999999999999999998653     346788999999998888876432   457888999999999986654 


Q ss_pred             ---HhhCCCcEEEecCCCCCCCCc---------------------------ccCCHHHHHHHHHhhhhHHHHHHHHHcHH
Q 030328          107 ---DEAGPVDVLVVNQGVFVPGEL---------------------------EVQSLDEVRLMIDVNIIGSFHMIKAALPL  156 (179)
Q Consensus       107 ---~~~~~id~li~~ag~~~~~~~---------------------------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  156 (179)
                         +++.++|.+..|||....+.+                           ...+.|++...|+.|+.|++++.+.+.|.
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence               446799999999998654311                           12466888999999999999999999999


Q ss_pred             HHhccCCCCcEEEEecccCcc
Q 030328          157 IKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       157 ~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +-.+...   .+|.+||..+.
T Consensus       162 l~~~~~~---~lvwtSS~~a~  179 (341)
T KOG1478|consen  162 LCHSDNP---QLVWTSSRMAR  179 (341)
T ss_pred             hhcCCCC---eEEEEeecccc
Confidence            8776543   89999998653

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.68  E-value=1.8e-15  Score=122.93  Aligned_cols=134  Identities=19%  Similarity=0.278  Sum_probs=97.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH----------------HHHHHHHHhhcCceEEEEEeeCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL----------------EEAKQSIQLATGIEVATYSADVR   97 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~----------------~~~~~~~~~~~~~~v~~~~~D~~   97 (179)
                      ..++|++|||||+|+||++++++|+++|++|+++|+.....                .+..+.+....+.++.++.+|++
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~  123 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC  123 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence            35789999999999999999999999999999987532110                00011111112345788999999


Q ss_pred             CHHHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328           98 DFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus        98 ~~~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |.+.+++++++. ++|++||+|+... .+....++++++..+++|+.|+.++++++...      +...++|++||.+
T Consensus       124 d~~~v~~~l~~~-~~D~ViHlAa~~~-~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~------gv~~~~V~~SS~~  193 (442)
T PLN02572        124 DFEFLSEAFKSF-EPDAVVHFGEQRS-APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF------APDCHLVKLGTMG  193 (442)
T ss_pred             CHHHHHHHHHhC-CCCEEEECCCccc-ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh------CCCccEEEEecce
Confidence            999999999875 5899999997533 23334456667788999999999999987432      1113789888864

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.2e-15  Score=123.45  Aligned_cols=133  Identities=23%  Similarity=0.338  Sum_probs=111.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +.||+++||||+|.||+++|+++++.+.+ +++.+|++-++.....++.... ..+..++.+|+.|.+.++++++++ ++
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~-kv  326 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH-KV  326 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-CC
Confidence            68999999999999999999999999865 8889999999988888887643 367888999999999999999987 69


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |+++|.|+.-|.+..+..+    .+.+.+|+.|+.++.+++...       +...+|.+|+-.+..|
T Consensus       327 d~VfHAAA~KHVPl~E~nP----~Eai~tNV~GT~nv~~aa~~~-------~V~~~V~iSTDKAV~P  382 (588)
T COG1086         327 DIVFHAAALKHVPLVEYNP----EEAIKTNVLGTENVAEAAIKN-------GVKKFVLISTDKAVNP  382 (588)
T ss_pred             ceEEEhhhhccCcchhcCH----HHHHHHhhHhHHHHHHHHHHh-------CCCEEEEEecCcccCC
Confidence            9999999998876555433    345899999999999998442       2448999999876543

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.68  E-value=2.7e-15  Score=117.41  Aligned_cols=125  Identities=22%  Similarity=0.274  Sum_probs=95.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +++|+++||||+|+||++++++|+++|  ++|++.+|+....++..+++   .+.++.++.+|++|.+++.++++   ++
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~---~i   75 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALR---GV   75 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHh---cC
Confidence            368999999999999999999999986  78999998766543333222   12457788999999999988876   58


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |++||+||.... +..+.++   ...+++|+.++.++++++.+    .+   ..+||++||...
T Consensus        76 D~Vih~Ag~~~~-~~~~~~~---~~~~~~Nv~g~~~ll~aa~~----~~---~~~iV~~SS~~~  128 (324)
T TIGR03589        76 DYVVHAAALKQV-PAAEYNP---FECIRTNINGAQNVIDAAID----NG---VKRVVALSTDKA  128 (324)
T ss_pred             CEEEECcccCCC-chhhcCH---HHHHHHHHHHHHHHHHHHHH----cC---CCEEEEEeCCCC
Confidence            999999996543 2222233   45799999999999998754    22   238999998654

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.68  E-value=2.5e-15  Score=123.51  Aligned_cols=126  Identities=19%  Similarity=0.244  Sum_probs=98.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh--------cCceEEEEEeeCCCHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--------TGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      ..+|+++||||+|+||++++++|+++|++|++++|+.++.+...+++...        ...++.++.+|+++.+++++.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            36889999999999999999999999999999999998877665544321        0134788999999998877655


Q ss_pred             HhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          107 DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       107 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                         +++|+||||+|....      ...++...+++|+.++.++++++..    .+   .++||++||..+
T Consensus       158 ---ggiDiVVn~AG~~~~------~v~d~~~~~~VN~~Gt~nLl~Aa~~----ag---VgRIV~VSSiga  211 (576)
T PLN03209        158 ---GNASVVICCIGASEK------EVFDVTGPYRIDYLATKNLVDAATV----AK---VNHFILVTSLGT  211 (576)
T ss_pred             ---cCCCEEEEccccccc------cccchhhHHHHHHHHHHHHHHHHHH----hC---CCEEEEEccchh
Confidence               479999999986432      1124677889999999999888643    22   349999999865

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.67  E-value=3.5e-15  Score=117.99  Aligned_cols=131  Identities=18%  Similarity=0.179  Sum_probs=97.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ..++++|||||+|.||++++++|+++|++|++++|+.+..+...+.+.  .+.++.++.+|+++.++++++++   ++|+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---~~d~   82 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--EGDRLRLFRADLQEEGSFDEAVK---GCDG   82 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--cCCeEEEEECCCCCHHHHHHHHc---CCCE
Confidence            467899999999999999999999999999999998765554433332  13567889999999998888776   5899


Q ss_pred             EEecCCCCCCCC-cccCCHHHH--HHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          115 LVVNQGVFVPGE-LEVQSLDEV--RLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       115 li~~ag~~~~~~-~~~~~~~~~--~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +||+|+...... ....+++.+  ..++++|+.++..+++++.+..      ...+||++||.+.
T Consensus        83 Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~------~~~~~v~~SS~~v  141 (353)
T PLN02896         83 VFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK------TVKRVVFTSSIST  141 (353)
T ss_pred             EEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC------CccEEEEEechhh
Confidence            999999754322 122233333  4577888899999999874421      1348999998653

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.66  E-value=2.2e-15  Score=118.52  Aligned_cols=134  Identities=16%  Similarity=0.116  Sum_probs=99.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH-HHHHHHH---hhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE-EAKQSIQ---LATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~---~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +.++|++|||||+|+||++++++|.++|++|++++|+++... ...+.+.   ...+.++.++.+|++|.++++++++..
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            467899999999999999999999999999999998754211 1111111   011345788999999999999998876


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                       ++|+|||+|+......    ..+..+..+++|+.++.++++++.+.+.++  +...++|++||.
T Consensus        83 -~~d~Vih~A~~~~~~~----~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~--~~~~~~v~~Ss~  140 (340)
T PLN02653         83 -KPDEVYNLAAQSHVAV----SFEMPDYTADVVATGALRLLEAVRLHGQET--GRQIKYYQAGSS  140 (340)
T ss_pred             -CCCEEEECCcccchhh----hhhChhHHHHHHHHHHHHHHHHHHHhcccc--ccceeEEEeccH
Confidence             5899999999754321    223446678999999999999987765432  223478888774

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.66  E-value=2.2e-15  Score=118.68  Aligned_cols=128  Identities=18%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-----HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      |++|||||+|+||++++++|+++|++|++++|+.+.     .+...+......+..+.++.+|++|.+++.++++.. ++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-~~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI-KP   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC-CC
Confidence            689999999999999999999999999999987642     111111111111345788999999999999999876 48


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      |++||+|+......    ..+.....+++|+.|+..+++++.+.-.+    ...++|++||.
T Consensus        80 d~ViH~Aa~~~~~~----~~~~~~~~~~~n~~gt~~ll~a~~~~~~~----~~~~~v~~SS~  133 (343)
T TIGR01472        80 TEIYNLAAQSHVKV----SFEIPEYTADVDGIGTLRLLEAVRTLGLI----KSVKFYQASTS  133 (343)
T ss_pred             CEEEECCcccccch----hhhChHHHHHHHHHHHHHHHHHHHHhCCC----cCeeEEEeccH
Confidence            99999999755322    12223456788999999999988553111    11378898886

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.65  E-value=3.8e-15  Score=116.30  Aligned_cols=128  Identities=16%  Similarity=0.174  Sum_probs=94.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      -++|+++||||+|.||++++++|+++|++|+++.|+.+..+...+..... ...++.++.+|+++.+.++++++   ++|
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d   79 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE---GCD   79 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh---CCC
Confidence            36899999999999999999999999999998888876544332222111 12357888999999998888887   589


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++||+|+.....     ..+.....+++|+.++.++++++..    .  .+..+||++||.+.
T Consensus        80 ~vih~A~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~~~~----~--~~v~rvV~~SS~~~  131 (322)
T PLN02986         80 AVFHTASPVFFT-----VKDPQTELIDPALKGTINVLNTCKE----T--PSVKRVILTSSTAA  131 (322)
T ss_pred             EEEEeCCCcCCC-----CCCchhhhhHHHHHHHHHHHHHHHh----c--CCccEEEEecchhh
Confidence            999999864321     1122345789999999999988632    1  12348999999764

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.65  E-value=4e-15  Score=114.31  Aligned_cols=128  Identities=19%  Similarity=0.181  Sum_probs=100.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH--HHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA--KQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~--~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++.++||||+|.||++++++|+++|++|..+.|+++..+..  ..++.. ...+...+.+|+.|++++++.++   +.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~-a~~~l~l~~aDL~d~~sf~~ai~---gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEG-AKERLKLFKADLLDEGSFDKAID---GCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhccc-CcccceEEeccccccchHHHHHh---CCC
Confidence            678999999999999999999999999999999999874332  222321 23458899999999999999988   589


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|+|.|.+......     +...++++..+.|+.++++++...    +  ...+||++||.++..
T Consensus        81 gVfH~Asp~~~~~~-----~~e~~li~pav~Gt~nVL~ac~~~----~--sVkrvV~TSS~aAv~  134 (327)
T KOG1502|consen   81 GVFHTASPVDFDLE-----DPEKELIDPAVKGTKNVLEACKKT----K--SVKRVVYTSSTAAVR  134 (327)
T ss_pred             EEEEeCccCCCCCC-----CcHHhhhhHHHHHHHHHHHHHhcc----C--CcceEEEeccHHHhc
Confidence            99999996554221     122368999999999999998432    1  356999999988754

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.65  E-value=5.9e-15  Score=115.99  Aligned_cols=128  Identities=19%  Similarity=0.238  Sum_probs=93.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +.++++++||||+|.||++++++|.++|++|+++.|+.+....... +.... ..++.++.+|++|.+++.+.++   ++
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~   81 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIA---GC   81 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHh---cC
Confidence            4568999999999999999999999999999988887654332211 11101 1257788999999998888776   58


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |++||+|+...   ..  ..+.....+++|+.++..+++++.+.    .  +..+++++||.+.
T Consensus        82 d~vih~A~~~~---~~--~~~~~~~~~~~nv~g~~~ll~a~~~~----~--~~~~~v~~SS~~~  134 (338)
T PLN00198         82 DLVFHVATPVN---FA--SEDPENDMIKPAIQGVHNVLKACAKA----K--SVKRVILTSSAAA  134 (338)
T ss_pred             CEEEEeCCCCc---cC--CCChHHHHHHHHHHHHHHHHHHHHhc----C--CccEEEEeeccee
Confidence            99999998532   11  11233456899999999999987442    1  2348999999753

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.63  E-value=8.5e-16  Score=116.86  Aligned_cols=127  Identities=20%  Similarity=0.324  Sum_probs=91.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhc-C--c--eEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           40 VFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLAT-G--I--EVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~--~--~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +|||||+|.||+++|+++++.+. +++++|+++..+-+..+++.... +  .  .+..+.+|+.|.+.++++++++ ++|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~-~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY-KPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT---T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc-CCC
Confidence            69999999999999999999985 59999999999988888885432 2  2  2345688999999999999877 699


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|.|+.-|.+..+. .   ..+.+++|+.|+.++++++..+       +..++|++||-.+..
T Consensus        80 iVfHaAA~KhVpl~E~-~---p~eav~tNv~GT~nv~~aa~~~-------~v~~~v~ISTDKAv~  133 (293)
T PF02719_consen   80 IVFHAAALKHVPLMED-N---PFEAVKTNVLGTQNVAEAAIEH-------GVERFVFISTDKAVN  133 (293)
T ss_dssp             EEEE------HHHHCC-C---HHHHHHHHCHHHHHHHHHHHHT-------T-SEEEEEEECGCSS
T ss_pred             EEEEChhcCCCChHHh-C---HHHHHHHHHHHHHHHHHHHHHc-------CCCEEEEccccccCC
Confidence            9999999887654443 2   3446999999999999988542       244999999976553

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02214 cinnamoyl-CoA reductase

Probab=99.63  E-value=5e-15  Score=116.73  Aligned_cols=122  Identities=19%  Similarity=0.257  Sum_probs=93.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH-HHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA-KQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++|+++||||+|.||++++++|.++|++|.+++|+.+..... ..++. ....++.++.+|+++.++++++++   ++|
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~---~~d   83 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELE-GGKERLILCKADLQDYEALKAAID---GCD   83 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhh-CCCCcEEEEecCcCChHHHHHHHh---cCC
Confidence            4678999999999999999999999999999999986543221 11221 112357788899999999888876   589


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++||+|+...         +++...+++|+.++.++++++..    .+   ..+||++||.++
T Consensus        84 ~Vih~A~~~~---------~~~~~~~~~nv~gt~~ll~aa~~----~~---v~r~V~~SS~~a  130 (342)
T PLN02214         84 GVFHTASPVT---------DDPEQMVEPAVNGAKFVINAAAE----AK---VKRVVITSSIGA  130 (342)
T ss_pred             EEEEecCCCC---------CCHHHHHHHHHHHHHHHHHHHHh----cC---CCEEEEecccee
Confidence            9999998532         23456799999999999998743    21   338999999654

>PLN02240 UDP-glucose 4-epimerase

Probab=99.62  E-value=2.5e-14  Score=112.85  Aligned_cols=129  Identities=22%  Similarity=0.341  Sum_probs=95.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHh---hcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL---ATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      .+++|+++||||+|++|++++++|.++|++|++++|......+..+.+..   ..+.++..+.+|+++.+++.+++++. 
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-   80 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST-   80 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC-
Confidence            46789999999999999999999999999999998754322211111211   11345778899999999999988764 


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ++|++||+|+.....    .+.+.+...+++|+.++..+++++    .+.+   ..+++++||.
T Consensus        81 ~~d~vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~~v~~Ss~  133 (352)
T PLN02240         81 RFDAVIHFAGLKAVG----ESVAKPLLYYDNNLVGTINLLEVM----AKHG---CKKLVFSSSA  133 (352)
T ss_pred             CCCEEEEccccCCcc----ccccCHHHHHHHHHHHHHHHHHHH----HHcC---CCEEEEEccH
Confidence            689999999864322    123456778999999999988865    2222   2389999985

>PLN02583 cinnamoyl-CoA reductase

Probab=99.61  E-value=1.4e-14  Score=112.06  Aligned_cols=126  Identities=14%  Similarity=0.176  Sum_probs=92.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH--HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK--LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+.  ..+...++.. .+.++.++.+|++|.+++.+.+.   ..|
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~-~~~~~~~~~~Dl~d~~~~~~~l~---~~d   80 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSC-EEERLKVFDVDPLDYHSILDALK---GCS   80 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhccc-CCCceEEEEecCCCHHHHHHHHc---CCC
Confidence            47899999999999999999999999999999986432  2222222211 13457788999999988877765   578


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      .++|.++....     .+ ++++..+++|+.|++++++++.+.+      ...+||++||.++.
T Consensus        81 ~v~~~~~~~~~-----~~-~~~~~~~~~nv~gt~~ll~aa~~~~------~v~riV~~SS~~a~  132 (297)
T PLN02583         81 GLFCCFDPPSD-----YP-SYDEKMVDVEVRAAHNVLEACAQTD------TIEKVVFTSSLTAV  132 (297)
T ss_pred             EEEEeCccCCc-----cc-ccHHHHHHHHHHHHHHHHHHHHhcC------CccEEEEecchHhe
Confidence            88887653221     11 2457789999999999999986542      12389999998653

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.61  E-value=1.6e-14  Score=114.18  Aligned_cols=130  Identities=20%  Similarity=0.239  Sum_probs=92.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEE-EEecChhHHHHHHHHHHh-hcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVS-ILARSGEKLEEAKQSIQL-ATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~-~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      |++|||||+|+||++++++|.++|++++ +.++.++. .... .+.. ..+.++.++.+|++|.+++++++++. ++|++
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~D~V   78 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNLM-SLAPVAQSERFAFEKVDICDRAELARVFTEH-QPDCV   78 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cchh-hhhhcccCCceEEEECCCcChHHHHHHHhhc-CCCEE
Confidence            6899999999999999999999998855 45554321 1111 1111 11335677899999999999998864 58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc--CCCCcEEEEeccc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ--NGGPASIALMSSQ  174 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~~~iv~iss~  174 (179)
                      ||+||....    +.+.+.++..+++|+.++..+++++.+.|....  ..+..+++++||.
T Consensus        79 ih~A~~~~~----~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~  135 (355)
T PRK10217         79 MHLAAESHV----DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTD  135 (355)
T ss_pred             EECCcccCc----chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecch
Confidence            999986432    123456688999999999999999876542111  1123489999985

>PLN02650 dihydroflavonol-4-reductase

Probab=99.60  E-value=3.3e-14  Score=112.36  Aligned_cols=126  Identities=18%  Similarity=0.185  Sum_probs=93.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+|++|||||+|.||++++++|+++|++|++++|+.+..+......... ...++.++.+|+++.+.++++++   .+|+
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~---~~d~   80 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR---GCTG   80 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh---CCCE
Confidence            5679999999999999999999999999999999876554433222111 11357788999999998888876   5899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +||+|+.....   ..  +.++..+++|+.++.++++++.+..      ...+||++||..
T Consensus        81 ViH~A~~~~~~---~~--~~~~~~~~~Nv~gt~~ll~aa~~~~------~~~r~v~~SS~~  130 (351)
T PLN02650         81 VFHVATPMDFE---SK--DPENEVIKPTVNGMLSIMKACAKAK------TVRRIVFTSSAG  130 (351)
T ss_pred             EEEeCCCCCCC---CC--CchhhhhhHHHHHHHHHHHHHHhcC------CceEEEEecchh
Confidence            99999854311   11  2235678999999999999875431      123899999874

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.58  E-value=3e-14  Score=111.09  Aligned_cols=125  Identities=14%  Similarity=0.203  Sum_probs=92.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++|+++||||+|.||++++++|.++|++|.+++|+.+...... .+....  ..++.++.+|+++++.++++++   ++|
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d   78 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTE-HLLALDGAKERLHLFKANLLEEGSFDSVVD---GCE   78 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHH-HHHhccCCCCceEEEeccccCcchHHHHHc---CCC
Confidence            4689999999999999999999999999999998765432221 111111  2367889999999988888876   589


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++||+|+..... .  ..+  ....+++|+.++.++++++....      +..++|++||.+
T Consensus        79 ~Vih~A~~~~~~-~--~~~--~~~~~~~nv~gt~~ll~a~~~~~------~~~~~v~~SS~~  129 (322)
T PLN02662         79 GVFHTASPFYHD-V--TDP--QAELIDPAVKGTLNVLRSCAKVP------SVKRVVVTSSMA  129 (322)
T ss_pred             EEEEeCCcccCC-C--CCh--HHHHHHHHHHHHHHHHHHHHhCC------CCCEEEEccCHH
Confidence            999999864321 1  111  24678999999999999864321      123899999975

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.57  E-value=2.1e-13  Score=99.14  Aligned_cols=132  Identities=20%  Similarity=0.311  Sum_probs=109.2

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++||++||+|-+  +.|+..+|+.|.++|+++..++.++ ++++..+++.+..+. ...++||+++.+++++++++   
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s-~~v~~cDV~~d~~i~~~f~~i~~   80 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGS-DLVLPCDVTNDESIDALFATIKK   80 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccC-CeEEecCCCCHHHHHHHHHHHHH
Confidence            5789999999865  8999999999999999999999887 455555556554444 45689999999999988865   


Q ss_pred             -hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          109 -AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       109 -~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                       .+++|.++|+-+....    +.+.+++.|.|...+++...+...+.+++.|.|.+  +|   +++.++
T Consensus        81 ~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~--gg---SiltLt  144 (259)
T COG0623          81 KWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN--GG---SILTLT  144 (259)
T ss_pred             hhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC--CC---cEEEEE
Confidence             5899999999887653    45677999999999999999999999999999965  33   666665

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=3.8e-14  Score=106.94  Aligned_cols=120  Identities=24%  Similarity=0.336  Sum_probs=94.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +++||||++|.||++.+.+|.+.|++|+++|.-.....+.....      ...++..|+.|.+.++++|++. ++|.+||
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~------~~~f~~gDi~D~~~L~~vf~~~-~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL------QFKFYEGDLLDRALLTAVFEEN-KIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc------cCceEEeccccHHHHHHHHHhc-CCCEEEE
Confidence            47999999999999999999999999999998665443333221      1578899999999999999987 7999999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      .||....++    +.+...+.++.|+.|++.+++++..    .+   ...||+-||.+
T Consensus        74 FAa~~~VgE----Sv~~Pl~Yy~NNv~gTl~Ll~am~~----~g---v~~~vFSStAa  120 (329)
T COG1087          74 FAASISVGE----SVQNPLKYYDNNVVGTLNLIEAMLQ----TG---VKKFIFSSTAA  120 (329)
T ss_pred             Cccccccch----hhhCHHHHHhhchHhHHHHHHHHHH----hC---CCEEEEecchh
Confidence            999765543    4466677899999999999987633    32   33677666543

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.55  E-value=1.7e-13  Score=107.51  Aligned_cols=125  Identities=23%  Similarity=0.300  Sum_probs=90.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|+||++++++|+++|++|++++|..+........+....+.++.++.+|++|.+.+.++++.. ++|++||+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~vvh~   80 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDH-AIDTVIHF   80 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcC-CCCEEEEC
Confidence            68999999999999999999999999998875433222222222222345667889999999998888754 69999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+......    ..+.....+++|+.++..+++++    ++.+   ..++|++||..
T Consensus        81 a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~~v~~Ss~~  126 (338)
T PRK10675         81 AGLKAVGE----SVQKPLEYYDNNVNGTLRLISAM----RAAN---VKNLIFSSSAT  126 (338)
T ss_pred             Cccccccc----hhhCHHHHHHHHHHHHHHHHHHH----HHcC---CCEEEEeccHH
Confidence            98654322    12234457899999999988865    3322   23899999864

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=6.5e-15  Score=106.80  Aligned_cols=138  Identities=20%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe--EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHH----Hhh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR--VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTAL----DEA  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~----~~~  109 (179)
                      ..|++|+||+|+|||..++..+...+-.  +++..|...+    .+.+....+........|++...-+.+++    ++.
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~----~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~   80 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE----LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKG   80 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc----ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcC
Confidence            5689999999999998888887766533  2333332221    11111111222222334444444344433    335


Q ss_pred             CCCcEEEecCCCCCCC---CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPG---ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~---~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++.|++|||||...+-   ..+..+.++|++.++.|+++++.+.+.++|.+++++  -.+.+||+||.+...+
T Consensus        81 gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p--~~~~vVnvSS~aav~p  151 (253)
T KOG1204|consen   81 GKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSP--VNGNVVNVSSLAAVRP  151 (253)
T ss_pred             CceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCC--ccCeEEEecchhhhcc
Confidence            7899999999987652   233678899999999999999999999999998874  1239999999887643

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.53  E-value=2.6e-13  Score=107.26  Aligned_cols=129  Identities=19%  Similarity=0.165  Sum_probs=93.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHH----hhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ----LATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ..+++|+++||||+|.||.+++++|.++|++|++++|.............    .....++.++.+|+.|.+.++++++ 
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~-   89 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK-   89 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh-
Confidence            34577999999999999999999999999999999986543222111111    1111357788999999988888876 


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                        .+|++||.|+......    +.++....+++|+.|+.++++++.    +.+   ..++|++||.+
T Consensus        90 --~~d~ViHlAa~~~~~~----~~~~~~~~~~~Nv~gt~nll~~~~----~~~---~~~~v~~SS~~  143 (348)
T PRK15181         90 --NVDYVLHQAALGSVPR----SLKDPIATNSANIDGFLNMLTAAR----DAH---VSSFTYAASSS  143 (348)
T ss_pred             --CCCEEEECccccCchh----hhhCHHHHHHHHHHHHHHHHHHHH----HcC---CCeEEEeechH
Confidence              5899999998644211    122334569999999999998762    221   33899999863

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.52  E-value=2.5e-13  Score=107.29  Aligned_cols=129  Identities=16%  Similarity=0.216  Sum_probs=91.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGAR-VSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +++||||+|+||++++++|.++|.+ |+.+++...  ..+... .+  ..+.++.++.+|++|.+++.+++++. .+|++
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~v   77 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DV--SDSERYVFEHADICDRAELDRIFAQH-QPDAV   77 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hc--ccCCceEEEEecCCCHHHHHHHHHhc-CCCEE
Confidence            6899999999999999999999977 555665321  122111 11  11345677899999999999998864 69999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC--CCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG--GPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--~~~~iv~iss~~  175 (179)
                      ||+|+......    +.+..+..+++|+.++..+++++.+.|.+...+  +..++|++||.+
T Consensus        78 ih~A~~~~~~~----~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~  135 (352)
T PRK10084         78 MHLAAESHVDR----SITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE  135 (352)
T ss_pred             EECCcccCCcc----hhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh
Confidence            99998654211    112345679999999999999998766433211  234899998853

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.51  E-value=3.8e-13  Score=102.47  Aligned_cols=127  Identities=21%  Similarity=0.307  Sum_probs=99.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+++|||||+|.||+|.+.+|.++|+.|+++|.-.....+.....+...  +..+.++..|++|.+.++++|+.. ++|.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-~fd~   80 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-KFDA   80 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-CCce
Confidence            5789999999999999999999999999999975554433333333322  477999999999999999999988 5999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+|-|+....++.    .+...+..+.|+.|++.+++.+    ++.+   ...+|+.||.+
T Consensus        81 V~Hfa~~~~vgeS----~~~p~~Y~~nNi~gtlnlLe~~----~~~~---~~~~V~sssat  130 (343)
T KOG1371|consen   81 VMHFAALAAVGES----MENPLSYYHNNIAGTLNLLEVM----KAHN---VKALVFSSSAT  130 (343)
T ss_pred             EEeehhhhccchh----hhCchhheehhhhhHHHHHHHH----HHcC---CceEEEeccee
Confidence            9999987665543    2344778999999999988875    3333   34788877753

>PLN02427 UDP-apiose/xylose synthase

Probab=99.50  E-value=4.8e-13  Score=107.04  Aligned_cols=126  Identities=13%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+.++++||||+|.||++++++|.++ |++|++++|+.+..+............++.++.+|++|.+.+.++++   .+|
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~---~~d   88 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK---MAD   88 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh---cCC
Confidence            45568999999999999999999998 59999999876543322111000012357889999999998888776   479


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|||.|+...+..... +   ....+..|+.++.++++++..    .+    .++|++||.+
T Consensus        89 ~ViHlAa~~~~~~~~~-~---~~~~~~~n~~gt~~ll~aa~~----~~----~r~v~~SS~~  138 (386)
T PLN02427         89 LTINLAAICTPADYNT-R---PLDTIYSNFIDALPVVKYCSE----NN----KRLIHFSTCE  138 (386)
T ss_pred             EEEEcccccChhhhhh-C---hHHHHHHHHHHHHHHHHHHHh----cC----CEEEEEeeee
Confidence            9999998654322211 1   123466799999998887622    21    3899999863

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.46  E-value=1.1e-12  Score=105.19  Aligned_cols=125  Identities=22%  Similarity=0.268  Sum_probs=90.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH--HHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC-C
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE--AKQSIQLATGIEVATYSADVRDFDAVKTALDEAG-P  111 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~-~  111 (179)
                      ..+++++||||+|.||++++++|.++|++|++++|+....+.  ..++... ....+..+.+|++|.++++++++..+ +
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~~  136 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK-ELPGAEVVFGDVTDADSLRKVLFSEGDP  136 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh-hcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence            357799999999999999999999999999999998754321  1111111 12357788999999999999988654 6


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +|++||+++.....     ..+    .+++|+.++..+++++    ++.+   ..++|++||.+.
T Consensus       137 ~D~Vi~~aa~~~~~-----~~~----~~~vn~~~~~~ll~aa----~~~g---v~r~V~iSS~~v  185 (390)
T PLN02657        137 VDVVVSCLASRTGG-----VKD----SWKIDYQATKNSLDAG----REVG---AKHFVLLSAICV  185 (390)
T ss_pred             CcEEEECCccCCCC-----Ccc----chhhHHHHHHHHHHHH----HHcC---CCEEEEEeeccc
Confidence            99999998743211     112    2466777887777765    2222   348999998753

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.46  E-value=6e-13  Score=102.16  Aligned_cols=118  Identities=24%  Similarity=0.232  Sum_probs=89.5

Q ss_pred             EEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           41 FITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        41 lItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      |||||+|.+|++++++|.++|  ++|.+.++++......  ....  .....++.+|++|.++++++++   +.|++||.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~--~~~~--~~~~~~~~~Di~d~~~l~~a~~---g~d~V~H~   73 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK--DLQK--SGVKEYIQGDITDPESLEEALE---GVDVVFHT   73 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch--hhhc--ccceeEEEeccccHHHHHHHhc---CCceEEEe
Confidence            699999999999999999999  7888888876532211  1111  1223388999999999999887   58999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |+......     ....+.++++|+.|+-++++++..    .   +..++|++||.+..
T Consensus        74 Aa~~~~~~-----~~~~~~~~~vNV~GT~nvl~aa~~----~---~VkrlVytSS~~vv  120 (280)
T PF01073_consen   74 AAPVPPWG-----DYPPEEYYKVNVDGTRNVLEAARK----A---GVKRLVYTSSISVV  120 (280)
T ss_pred             CccccccC-----cccHHHHHHHHHHHHHHHHHHHHH----c---CCCEEEEEcCccee
Confidence            99654322     344567899999999999998743    1   24599999998653

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.45  E-value=1.5e-12  Score=100.99  Aligned_cols=123  Identities=18%  Similarity=0.232  Sum_probs=88.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +++||||+|+||++++++|+++|  .+|++.+|... ...+..+.+.  ....+.++.+|+++++++.++++.. ++|++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE--DNPRYRFVKGDIGDRELVSRLFTEH-QPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc--cCCCcEEEEcCCcCHHHHHHHHhhc-CCCEE
Confidence            48999999999999999999987  78888876421 1111111221  1235677889999999999988865 58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ||+|+.....    .+.+.++..+++|+.++..+++++...+.      ..+++++||.
T Consensus        78 i~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~~~i~~Ss~  126 (317)
T TIGR01181        78 VHFAAESHVD----RSISGPAAFIETNVVGTYTLLEAVRKYWH------EFRFHHISTD  126 (317)
T ss_pred             EEcccccCch----hhhhCHHHHHHHHHHHHHHHHHHHHhcCC------CceEEEeecc
Confidence            9999865421    22344567799999999999987744321      1279999885

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.43  E-value=1e-12  Score=102.52  Aligned_cols=116  Identities=22%  Similarity=0.300  Sum_probs=88.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      ++++||||+|+||++++++|.++|++|++++|+++.....       ....+..+.+|+++.+++.++++   .+|++||
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------~~~~~~~~~~D~~~~~~l~~~~~---~~d~vi~   70 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL-------EGLDVEIVEGDLRDPASLRKAVA---GCRALFH   70 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc-------ccCCceEEEeeCCCHHHHHHHHh---CCCEEEE
Confidence            4699999999999999999999999999999986543211       12246788999999998888776   5899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +|+....      ..++++..+++|+.++..+++++..    .+   ..++|++||.+.
T Consensus        71 ~a~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~~v~~SS~~~  116 (328)
T TIGR03466        71 VAADYRL------WAPDPEEMYAANVEGTRNLLRAALE----AG---VERVVYTSSVAT  116 (328)
T ss_pred             eceeccc------CCCCHHHHHHHHHHHHHHHHHHHHH----hC---CCeEEEEechhh
Confidence            9975321      1123456789999999999887632    22   238999998643

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.43  E-value=2.5e-12  Score=100.06  Aligned_cols=123  Identities=21%  Similarity=0.303  Sum_probs=88.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|.||++++++|.++|++|+++++......+...+...  ...+..+.+|+++.++++++++. +++|++||+
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~-~~~d~vv~~   77 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER--ITRVTFVEGDLRDRELLDRLFEE-HKIDAVIHF   77 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc--ccceEEEECCCCCHHHHHHHHHh-CCCcEEEEC
Confidence            479999999999999999999999999887654332222222211  11467788999999999998875 379999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||.....+    +.++....++.|+.++..+++++.    +.+   ..+++++||..
T Consensus        78 ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~---~~~~v~~ss~~  123 (328)
T TIGR01179        78 AGLIAVGE----SVQDPLKYYRNNVVNTLNLLEAMQ----QTG---VKKFIFSSSAA  123 (328)
T ss_pred             ccccCcch----hhcCchhhhhhhHHHHHHHHHHHH----hcC---CCEEEEecchh
Confidence            99654322    223345678899999999988752    222   23888888753

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.43  E-value=1.1e-11  Score=97.76  Aligned_cols=86  Identities=22%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             CCcEEEEEcCCCchHHH--HHHHHHHcCCeEEEEecChhHHH------------HHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           36 KDRHVFITGGSSGIGLA--LAHQAAKEGARVSILARSGEKLE------------EAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~--la~~l~~~g~~v~~~~r~~~~~~------------~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      -+|++||||+++|+|.+  +|+.| +.|++++++++..+..+            ...+.+ ...+..+..+.+|+++.++
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a-~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFA-KAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHH-HhcCCceEEEEcCCCCHHH
Confidence            47999999999999999  89999 99999888885432211            222223 2335667788999999999


Q ss_pred             HHHHHHh----hCCCcEEEecCCCCC
Q 030328          102 VKTALDE----AGPVDVLVVNQGVFV  123 (179)
Q Consensus       102 v~~~~~~----~~~id~li~~ag~~~  123 (179)
                      +++++++    +|++|+||||+|...
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~~  143 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASPR  143 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccCC
Confidence            8877655    589999999998763

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.42  E-value=7.2e-13  Score=99.54  Aligned_cols=100  Identities=28%  Similarity=0.315  Sum_probs=81.6

Q ss_pred             HHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCcEEEecCCCCCCCCcccCC
Q 030328           53 LAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVDVLVVNQGVFVPGELEVQS  131 (179)
Q Consensus        53 la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id~li~~ag~~~~~~~~~~~  131 (179)
                      +|++|+++|++|++++|++++.+     .       ..++.+|+++.+++++++++. +++|++|||||....       
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~-------~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~-------   61 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT-----L-------DGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGT-------   61 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh-----h-------hHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCC-------
Confidence            47899999999999999876532     1       134689999999999998875 679999999996421       


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          132 LDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       132 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       +.++..+++|+.+++.+++.++|.|.+.     ++||++||.++.
T Consensus        62 -~~~~~~~~vN~~~~~~l~~~~~~~~~~~-----g~Iv~isS~~~~  101 (241)
T PRK12428         62 -APVELVARVNFLGLRHLTEALLPRMAPG-----GAIVNVASLAGA  101 (241)
T ss_pred             -CCHHHhhhhchHHHHHHHHHHHHhccCC-----cEEEEeCcHHhh
Confidence             3478899999999999999999998532     399999998764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.42  E-value=6.5e-12  Score=94.90  Aligned_cols=120  Identities=20%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH-HHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF-DAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~v~~~~~~~~~i  112 (179)
                      +..+++++||||+|++|++++++|+++|++|+++.|++++.+....     .+..+.++.+|+++. +.+.+.+.  .++
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~l~~~~~--~~~   86 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP-----QDPSLQIVRADVTEGSDKLVEAIG--DDS   86 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc-----cCCceEEEEeeCCCCHHHHHHHhh--cCC
Confidence            4567899999999999999999999999999999998765432211     123577889999983 43333331  369


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |++|+++|......    .    ...+++|..++..+++++    .+.+   ..+||++||..
T Consensus        87 d~vi~~~g~~~~~~----~----~~~~~~n~~~~~~ll~a~----~~~~---~~~iV~iSS~~  134 (251)
T PLN00141         87 DAVICATGFRRSFD----P----FAPWKVDNFGTVNLVEAC----RKAG---VTRFILVSSIL  134 (251)
T ss_pred             CEEEECCCCCcCCC----C----CCceeeehHHHHHHHHHH----HHcC---CCEEEEEcccc
Confidence            99999988642111    0    112467888888888875    2222   24899999975

>PLN02686 cinnamoyl-CoA reductase

Probab=99.42  E-value=8.3e-12  Score=99.40  Aligned_cols=128  Identities=20%  Similarity=0.250  Sum_probs=91.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-----cCceEEEEEeeCCCHHHHHHHHHh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-----TGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ..++|+++||||+|+||++++++|+++|++|+++.|+.+..+.. +++...     ....+.++.+|++|.++++++++ 
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~-  127 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD-  127 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH-
Confidence            35789999999999999999999999999999888886654433 222110     01246788999999999988887 


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                        .+|.++|.|+...+.....    ..+...++|+.++..+++++..    .  .+..++|++||.+
T Consensus       128 --~~d~V~hlA~~~~~~~~~~----~~~~~~~~nv~gt~~llea~~~----~--~~v~r~V~~SS~~  182 (367)
T PLN02686        128 --GCAGVFHTSAFVDPAGLSG----YTKSMAELEAKASENVIEACVR----T--ESVRKCVFTSSLL  182 (367)
T ss_pred             --hccEEEecCeeeccccccc----ccchhhhhhHHHHHHHHHHHHh----c--CCccEEEEeccHH
Confidence              4789999888654322111    1123457789999888887622    1  1234899999863

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.37  E-value=9.3e-12  Score=92.65  Aligned_cols=117  Identities=25%  Similarity=0.362  Sum_probs=90.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      |+||||+|.+|.+++++|.++|..|+.+.|+.........+      .++.++.+|+.+.+.++++++.. .+|.+||.|
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~------~~~~~~~~dl~~~~~~~~~~~~~-~~d~vi~~a   73 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK------LNVEFVIGDLTDKEQLEKLLEKA-NIDVVIHLA   73 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH------TTEEEEESETTSHHHHHHHHHHH-TESEEEEEB
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc------ceEEEEEeecccccccccccccc-CceEEEEee
Confidence            79999999999999999999999998888876643322211      16788999999999999999887 799999999


Q ss_pred             CCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          120 GVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      +....    ..+.+.....++.|+.++..+++.+..    .+.   .+++++||.
T Consensus        74 ~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~---~~~i~~sS~  117 (236)
T PF01370_consen   74 AFSSN----PESFEDPEEIIEANVQGTRNLLEAARE----AGV---KRFIFLSSA  117 (236)
T ss_dssp             SSSSH----HHHHHSHHHHHHHHHHHHHHHHHHHHH----HTT---SEEEEEEEG
T ss_pred             ccccc----ccccccccccccccccccccccccccc----ccc---ccccccccc
Confidence            86431    112245567788999999888887633    222   489999985

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.37  E-value=1.3e-11  Score=105.22  Aligned_cols=127  Identities=15%  Similarity=0.185  Sum_probs=90.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKE--GARVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      .++|+||||||+|.||++++++|.++  |++|+++++...  ......   .......+.++.+|++|.+.+++.+... 
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~---~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-   79 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLN---PSKSSPNFKFVKGDIASADLVNYLLITE-   79 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhh---hcccCCCeEEEECCCCChHHHHHHHhhc-
Confidence            46789999999999999999999998  688998887531  111111   1111345788899999998887766443 


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++|++||+|+......    ..++....+++|+.++..+++++..    .  +...++|++||..
T Consensus        80 ~~D~ViHlAa~~~~~~----~~~~~~~~~~~Nv~gt~~ll~a~~~----~--~~vkr~I~~SS~~  134 (668)
T PLN02260         80 GIDTIMHFAAQTHVDN----SFGNSFEFTKNNIYGTHVLLEACKV----T--GQIRRFIHVSTDE  134 (668)
T ss_pred             CCCEEEECCCccCchh----hhhCHHHHHHHHHHHHHHHHHHHHh----c--CCCcEEEEEcchH
Confidence            6999999999654321    1222345679999999999887622    1  2234899999863

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.36  E-value=2.1e-11  Score=96.29  Aligned_cols=117  Identities=12%  Similarity=0.232  Sum_probs=85.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC-CHHHHHHHHHhhCCCcEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR-DFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~v~~~~~~~~~id~l  115 (179)
                      ++++||||+|.||++++++|.+. |++|++++|+.+....    +.  ....+.++.+|+. +.+.++++++   ++|++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~----~~--~~~~~~~~~~Dl~~~~~~~~~~~~---~~d~V   72 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD----LV--NHPRMHFFEGDITINKEWIEYHVK---KCDVI   72 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH----hc--cCCCeEEEeCCCCCCHHHHHHHHc---CCCEE
Confidence            57999999999999999999986 6999999987643221    11  1234778899997 6666666655   58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||.|+...+...    .++.+..+++|+.++.++++++..    .+    .++|++||..
T Consensus        73 iH~aa~~~~~~~----~~~p~~~~~~n~~~~~~ll~aa~~----~~----~~~v~~SS~~  120 (347)
T PRK11908         73 LPLVAIATPATY----VKQPLRVFELDFEANLPIVRSAVK----YG----KHLVFPSTSE  120 (347)
T ss_pred             EECcccCChHHh----hcCcHHHHHHHHHHHHHHHHHHHh----cC----CeEEEEecce
Confidence            999986543221    123345689999999998887632    22    3899999863

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.34  E-value=1.6e-11  Score=95.81  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|.+|++++++|.++|++|.+++|+.+....    +.   ...+.++.+|++|++++.+.++   ++|++||.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~----l~---~~~v~~v~~Dl~d~~~l~~al~---g~d~Vi~~   71 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF----LK---EWGAELVYGDLSLPETLPPSFK---GVTAIIDA   71 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhh----Hh---hcCCEEEECCCCCHHHHHHHHC---CCCEEEEC
Confidence            69999999999999999999999999999998654321    11   1246778999999998888776   58999998


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ++....      +   .....++|..++.++.+++..    .+   ..++|++||.
T Consensus        72 ~~~~~~------~---~~~~~~~~~~~~~~l~~aa~~----~g---vkr~I~~Ss~  111 (317)
T CHL00194         72 STSRPS------D---LYNAKQIDWDGKLALIEAAKA----AK---IKRFIFFSIL  111 (317)
T ss_pred             CCCCCC------C---ccchhhhhHHHHHHHHHHHHH----cC---CCEEEEeccc
Confidence            763211      1   122456788888888877622    22   3489999985

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.33  E-value=1.9e-11  Score=94.68  Aligned_cols=105  Identities=19%  Similarity=0.205  Sum_probs=80.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +++|||||+|.||++++++|.++| +|++++|...                  .+..|++|.+.+++++++. ++|++||
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~------------------~~~~Dl~d~~~~~~~~~~~-~~D~Vih   60 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST------------------DYCGDFSNPEGVAETVRKI-RPDVIVN   60 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc------------------cccCCCCCHHHHHHHHHhc-CCCEEEE
Confidence            369999999999999999999999 8888887531                  1347999999999988865 5899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      +|+.......    .++.+..+++|+.++..+++++..    .  +  .++|.+||.
T Consensus        61 ~Aa~~~~~~~----~~~~~~~~~~N~~~~~~l~~aa~~----~--g--~~~v~~Ss~  105 (299)
T PRK09987         61 AAAHTAVDKA----ESEPEFAQLLNATSVEAIAKAANE----V--G--AWVVHYSTD  105 (299)
T ss_pred             CCccCCcchh----hcCHHHHHHHHHHHHHHHHHHHHH----c--C--CeEEEEccc
Confidence            9987553221    122345678999999999988732    2  1  278888885

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.30  E-value=4e-11  Score=102.14  Aligned_cols=120  Identities=13%  Similarity=0.167  Sum_probs=87.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH-HHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA-VKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-v~~~~~~~~~i  112 (179)
                      -++++++||||+|.||++++++|.++ |++|++++|.......    ..  ....+.++.+|++|.++ +++.++   ++
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~--~~~~~~~~~gDl~d~~~~l~~~l~---~~  383 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FL--GHPRFHFVEGDISIHSEWIEYHIK---KC  383 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hc--CCCceEEEeccccCcHHHHHHHhc---CC
Confidence            36889999999999999999999985 7999999997643221    11  12357778899998654 455554   68


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |++||.|+...+....    +..+..+++|+.++..+++++..    .+    .++|++||.+
T Consensus       384 D~ViHlAa~~~~~~~~----~~~~~~~~~Nv~~t~~ll~a~~~----~~----~~~V~~SS~~  434 (660)
T PRK08125        384 DVVLPLVAIATPIEYT----RNPLRVFELDFEENLKIIRYCVK----YN----KRIIFPSTSE  434 (660)
T ss_pred             CEEEECccccCchhhc----cCHHHHHHhhHHHHHHHHHHHHh----cC----CeEEEEcchh
Confidence            9999999865532211    22344689999999999988742    21    3899999863

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.28  E-value=4.2e-11  Score=92.77  Aligned_cols=117  Identities=22%  Similarity=0.269  Sum_probs=85.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      .+||||++|.||++++++|.++|++|..++|.........        ..+..+.+|+++.+...+..+...  |.+||.
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~--d~vih~   71 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--------SGVEFVVLDLTDRDLVDELAKGVP--DAVIHL   71 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc--------cccceeeecccchHHHHHHHhcCC--CEEEEc
Confidence            3999999999999999999999999999999766433211        346678889998866666665332  999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+........  .. .....+++|+.++.++++++..       .+..++++.||.+
T Consensus        72 aa~~~~~~~~--~~-~~~~~~~~nv~gt~~ll~aa~~-------~~~~~~v~~ss~~  118 (314)
T COG0451          72 AAQSSVPDSN--AS-DPAEFLDVNVDGTLNLLEAARA-------AGVKRFVFASSVS  118 (314)
T ss_pred             cccCchhhhh--hh-CHHHHHHHHHHHHHHHHHHHHH-------cCCCeEEEeCCCc
Confidence            9976543211  11 3455799999999999998733       1234888866644

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.27  E-value=1.5e-10  Score=92.26  Aligned_cols=120  Identities=16%  Similarity=0.064  Sum_probs=85.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+|+++||||+|.||++++++|.++|++|++++|......   .   . ......++.+|+++.+.+.+.++   ++|++
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~---~---~-~~~~~~~~~~Dl~d~~~~~~~~~---~~D~V   89 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM---S---E-DMFCHEFHLVDLRVMENCLKVTK---GVDHV   89 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc---c---c-ccccceEEECCCCCHHHHHHHHh---CCCEE
Confidence            6789999999999999999999999999999998643211   0   0 01124567889999888777665   58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||.|+.........   +.....++.|+.++.++++++..    .+   ..++|++||..
T Consensus        90 ih~Aa~~~~~~~~~---~~~~~~~~~N~~~t~nll~aa~~----~~---vk~~V~~SS~~  139 (370)
T PLN02695         90 FNLAADMGGMGFIQ---SNHSVIMYNNTMISFNMLEAARI----NG---VKRFFYASSAC  139 (370)
T ss_pred             EEcccccCCccccc---cCchhhHHHHHHHHHHHHHHHHH----hC---CCEEEEeCchh
Confidence            99998543222111   11234567899999999887632    22   33899999863

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.26  E-value=8.5e-11  Score=92.73  Aligned_cols=121  Identities=16%  Similarity=0.209  Sum_probs=83.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHH---HHHHHHHHhh------cC-ceEEEEEeeCCCH------H
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKL---EEAKQSIQLA------TG-IEVATYSADVRDF------D  100 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~---~~~~~~~~~~------~~-~~v~~~~~D~~~~------~  100 (179)
                      +++||||+|++|++++++|+++|  ++|+++.|+.+..   +...+.+...      .. .++..+.+|++++      +
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            48999999999999999999999  7799999976532   2222222111      01 4688889998864      2


Q ss_pred             HHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          101 AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       101 ~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ...++.   ..+|++||+|+.....       ..++...+.|+.++..+++.+..    .+   ...++++||.+.
T Consensus        81 ~~~~~~---~~~d~vih~a~~~~~~-------~~~~~~~~~nv~g~~~ll~~a~~----~~---~~~~v~iSS~~v  139 (367)
T TIGR01746        81 EWERLA---ENVDTIVHNGALVNWV-------YPYSELRAANVLGTREVLRLAAS----GR---AKPLHYVSTISV  139 (367)
T ss_pred             HHHHHH---hhCCEEEeCCcEeccC-------CcHHHHhhhhhHHHHHHHHHHhh----CC---CceEEEEccccc
Confidence            333333   4699999999864321       12355678999999998887633    11   236999998754

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.26  E-value=2.7e-10  Score=81.86  Aligned_cols=100  Identities=29%  Similarity=0.354  Sum_probs=78.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      |+|+||+|.+|+.++++|.++|++|+++.|++++.++         ...+..+.+|+.|++++.+.++   +.|++|+++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---------~~~~~~~~~d~~d~~~~~~al~---~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---------SPGVEIIQGDLFDPDSVKAALK---GADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---------CTTEEEEESCTTCHHHHHHHHT---TSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---------ccccccceeeehhhhhhhhhhh---hcchhhhhh
Confidence            6899999999999999999999999999999886654         3568889999999988888877   689999999


Q ss_pred             CCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          120 GVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |....        +             ...++.++..+++.+   ..+++.+|+..
T Consensus        69 ~~~~~--------~-------------~~~~~~~~~a~~~~~---~~~~v~~s~~~  100 (183)
T PF13460_consen   69 GPPPK--------D-------------VDAAKNIIEAAKKAG---VKRVVYLSSAG  100 (183)
T ss_dssp             HSTTT--------H-------------HHHHHHHHHHHHHTT---SSEEEEEEETT
T ss_pred             hhhcc--------c-------------ccccccccccccccc---cccceeeeccc
Confidence            75332        1             222344444555544   33899998865

...

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.26  E-value=8.8e-11  Score=90.14  Aligned_cols=102  Identities=23%  Similarity=0.278  Sum_probs=80.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|.||++++++|.++|++|++++|+                      .+|+.+.+++++.++.. .+|++||+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------------~~d~~~~~~~~~~~~~~-~~d~vi~~   57 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------------QLDLTDPEALERLLRAI-RPDAVVNT   57 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------------ccCCCCHHHHHHHHHhC-CCCEEEEC
Confidence            37999999999999999999999999998884                      36999999999888764 58999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+......    ..+..+..+++|+.++..+++++..    .+    .++|++||.+
T Consensus        58 a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~----~~~v~~Ss~~  102 (287)
T TIGR01214        58 AAYTDVDG----AESDPEKAFAVNALAPQNLARAAAR----HG----ARLVHISTDY  102 (287)
T ss_pred             Cccccccc----cccCHHHHHHHHHHHHHHHHHHHHH----cC----CeEEEEeeee
Confidence            98653221    1123456789999999999888632    21    2789998853

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.24  E-value=1.1e-10  Score=88.29  Aligned_cols=123  Identities=20%  Similarity=0.251  Sum_probs=91.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++||||++|.||+++++.+.++..  +|+.+|.-.-  ..+.. +.+.  ...+..++++|+.|.+.+.++++++ .+|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l-~~~~--~~~~~~fv~~DI~D~~~v~~~~~~~-~~D   76 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENL-ADVE--DSPRYRFVQGDICDRELVDRLFKEY-QPD   76 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHH-Hhhh--cCCCceEEeccccCHHHHHHHHHhc-CCC
Confidence            4789999999999999999998764  4677776321  12222 2221  2457889999999999999999987 699


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      +++|-|+-.|..    .+-++.+.-+++|+.|++.+++++..++.+      .+++.||+-
T Consensus        77 ~VvhfAAESHVD----RSI~~P~~Fi~TNv~GT~~LLEaar~~~~~------frf~HISTD  127 (340)
T COG1088          77 AVVHFAAESHVD----RSIDGPAPFIQTNVVGTYTLLEAARKYWGK------FRFHHISTD  127 (340)
T ss_pred             eEEEechhcccc----ccccChhhhhhcchHHHHHHHHHHHHhccc------ceEEEeccc
Confidence            999999876632    233333445999999999999998665432      378888864

>PRK05865 hypothetical protein; Provisional

Probab=99.22  E-value=2.6e-10  Score=98.45  Aligned_cols=104  Identities=26%  Similarity=0.265  Sum_probs=81.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      ++++||||+|.||++++++|.++|++|++++|+.+..      .    ...+.++.+|++|.+++.++++   ++|++||
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~----~~~v~~v~gDL~D~~~l~~al~---~vD~VVH   67 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W----PSSADFIAADIRDATAVESAMT---GADVVAH   67 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c----ccCceEEEeeCCCHHHHHHHHh---CCCEEEE
Confidence            3699999999999999999999999999999975321      1    1246778999999999988886   5899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      +|+...+             .+++|+.++.++++++    .+.+   ..++|++||.
T Consensus        68 lAa~~~~-------------~~~vNv~GT~nLLeAa----~~~g---vkr~V~iSS~  104 (854)
T PRK05865         68 CAWVRGR-------------NDHINIDGTANVLKAM----AETG---TGRIVFTSSG  104 (854)
T ss_pred             CCCcccc-------------hHHHHHHHHHHHHHHH----HHcC---CCeEEEECCc
Confidence            9975321             3678999998877664    3332   2389999985

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.21  E-value=2.1e-10  Score=89.00  Aligned_cols=114  Identities=13%  Similarity=0.150  Sum_probs=80.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCCcEEEe
Q 030328           40 VFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPVDVLVV  117 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~id~li~  117 (179)
                      +|||||+|.||.+++++|.++|+ .|++++|+.+.. .. .++    .  ...+..|+++.+.++.+.+. ..++|++||
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~----~--~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh   72 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KF-LNL----A--DLVIADYIDKEDFLDRLEKGAFGKIEAIFH   72 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hh-hhh----h--heeeeccCcchhHHHHHHhhccCCCCEEEE
Confidence            58999999999999999999998 688887754321 11 111    1  12356678887777666552 357999999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|+....      +.++.+..+++|+.++..+++++..    .+    .++|++||..
T Consensus        73 ~A~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~----~~----~~~v~~SS~~  116 (314)
T TIGR02197        73 QGACSDT------TETDGEYMMENNYQYSKRLLDWCAE----KG----IPFIYASSAA  116 (314)
T ss_pred             CccccCc------cccchHHHHHHHHHHHHHHHHHHHH----hC----CcEEEEccHH
Confidence            9986432      2234566789999999999987632    21    2799999854

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.20  E-value=2.6e-10  Score=92.86  Aligned_cols=118  Identities=21%  Similarity=0.180  Sum_probs=81.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++++++||||+|.||++++++|.++|++|+++++......+.....  ....++..+..|+.+..     ++   ++|+|
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~--~~~~~~~~i~~D~~~~~-----l~---~~D~V  187 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH--FSNPNFELIRHDVVEPI-----LL---EVDQI  187 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh--ccCCceEEEECCccChh-----hc---CCCEE
Confidence            5689999999999999999999999999999987533211111111  11234667778876542     22   58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||.|+...+....    ++....+++|+.++.++++++..    .  +  .++|++||..
T Consensus       188 iHlAa~~~~~~~~----~~p~~~~~~Nv~gt~nLleaa~~----~--g--~r~V~~SS~~  235 (442)
T PLN02206        188 YHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----V--G--ARFLLTSTSE  235 (442)
T ss_pred             EEeeeecchhhhh----cCHHHHHHHHHHHHHHHHHHHHH----h--C--CEEEEECChH
Confidence            9999865432211    12356789999999999988732    2  1  2799999864

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.19  E-value=6.6e-11  Score=91.22  Aligned_cols=103  Identities=23%  Similarity=0.242  Sum_probs=76.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +++|||||+|.+|.++.+.|.++|++++.++|+                      ..|++|.+.+.+++++. ++|++||
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~----------------------~~dl~d~~~~~~~~~~~-~pd~Vin   57 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS----------------------DLDLTDPEAVAKLLEAF-KPDVVIN   57 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT----------------------CS-TTSHHHHHHHHHHH---SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch----------------------hcCCCCHHHHHHHHHHh-CCCeEec
Confidence            479999999999999999999999999998776                      47999999999999887 5899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|+......    -.++.+..+.+|+.++..+.+.+..    .    ..++|++||..
T Consensus        58 ~aa~~~~~~----ce~~p~~a~~iN~~~~~~la~~~~~----~----~~~li~~STd~  103 (286)
T PF04321_consen   58 CAAYTNVDA----CEKNPEEAYAINVDATKNLAEACKE----R----GARLIHISTDY  103 (286)
T ss_dssp             ------HHH----HHHSHHHHHHHHTHHHHHHHHHHHH----C----T-EEEEEEEGG
T ss_pred             cceeecHHh----hhhChhhhHHHhhHHHHHHHHHHHH----c----CCcEEEeeccE
Confidence            998653211    1233556799999999999988732    2    23999999863

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.17  E-value=3.3e-10  Score=87.95  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=71.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh------hCCCc
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE------AGPVD  113 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~------~~~id  113 (179)
                      ++||||+|.||++++++|.++|++++++.++.+..... ..          ...+|+.|..+.+.++++      ++++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~~----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~d   70 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VN----------LVDLDIADYMDKEDFLAQIMAGDDFGDIE   70 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-Hh----------hhhhhhhhhhhHHHHHHHHhcccccCCcc
Confidence            79999999999999999999999766655443321110 00          112355554443333322      24799


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++||.|+......   .++   +..++.|+.++..+++++.    +.+    .++|++||.+
T Consensus        71 ~Vih~A~~~~~~~---~~~---~~~~~~n~~~t~~ll~~~~----~~~----~~~i~~SS~~  118 (308)
T PRK11150         71 AIFHEGACSSTTE---WDG---KYMMDNNYQYSKELLHYCL----ERE----IPFLYASSAA  118 (308)
T ss_pred             EEEECceecCCcC---CCh---HHHHHHHHHHHHHHHHHHH----HcC----CcEEEEcchH
Confidence            9999998543321   122   3468999999999888863    222    2689999864

>PLN02996 fatty acyl-CoA reductase

Probab=99.15  E-value=6.3e-10  Score=91.73  Aligned_cols=127  Identities=9%  Similarity=0.175  Sum_probs=86.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC---eEEEEecChhH---HHHHHHHH---------Hhhc--------CceE
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA---RVSILARSGEK---LEEAKQSI---------QLAT--------GIEV   89 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~---~v~~~~r~~~~---~~~~~~~~---------~~~~--------~~~v   89 (179)
                      ..+++|+++||||+|.+|++++.+|++.+.   +|++..|....   .+....++         ....        ..++
T Consensus         7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv   86 (491)
T PLN02996          7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV   86 (491)
T ss_pred             HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence            346899999999999999999999997653   57888886531   11111111         0000        1468


Q ss_pred             EEEEeeCCC-------HHHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC
Q 030328           90 ATYSADVRD-------FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN  162 (179)
Q Consensus        90 ~~~~~D~~~-------~~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~  162 (179)
                      .++.+|+++       .+.++++++   .+|++||+|+.....       +..+..+++|+.|+..+++.+...      
T Consensus        87 ~~i~GDl~~~~LGLs~~~~~~~l~~---~vD~ViH~AA~v~~~-------~~~~~~~~~Nv~gt~~ll~~a~~~------  150 (491)
T PLN02996         87 TPVPGDISYDDLGVKDSNLREEMWK---EIDIVVNLAATTNFD-------ERYDVALGINTLGALNVLNFAKKC------  150 (491)
T ss_pred             EEEecccCCcCCCCChHHHHHHHHh---CCCEEEECccccCCc-------CCHHHHHHHHHHHHHHHHHHHHhc------
Confidence            899999984       344555554   589999999865421       234567899999999998876321      


Q ss_pred             CCCcEEEEecccC
Q 030328          163 GGPASIALMSSQA  175 (179)
Q Consensus       163 ~~~~~iv~iss~~  175 (179)
                      +...+++.+||..
T Consensus       151 ~~~k~~V~vST~~  163 (491)
T PLN02996        151 VKVKMLLHVSTAY  163 (491)
T ss_pred             CCCCeEEEEeeeE
Confidence            1133788888864

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.15  E-value=3.3e-10  Score=87.64  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=76.1

Q ss_pred             EEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecCC
Q 030328           41 FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQG  120 (179)
Q Consensus        41 lItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~ag  120 (179)
                      |||||+|.||+++++.|.++|++|+++.++                     ..+|+++.++++++++.. ++|++||+|+
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~---------------------~~~Dl~~~~~l~~~~~~~-~~d~Vih~A~   58 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH---------------------KELDLTRQADVEAFFAKE-KPTYVILAAA   58 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc---------------------ccCCCCCHHHHHHHHhcc-CCCEEEEeee
Confidence            699999999999999999999987765432                     137999999999988875 5799999998


Q ss_pred             CCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          121 VFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ........   .+.....++.|+.++..+++++..    .+   ..++|++||.
T Consensus        59 ~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~~----~~---~~~~i~~SS~  102 (306)
T PLN02725         59 KVGGIHAN---MTYPADFIRENLQIQTNVIDAAYR----HG---VKKLLFLGSS  102 (306)
T ss_pred             eecccchh---hhCcHHHHHHHhHHHHHHHHHHHH----cC---CCeEEEeCce
Confidence            64321111   112234688999999999888732    22   2389999885

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.14  E-value=7.3e-10  Score=90.10  Aligned_cols=117  Identities=19%  Similarity=0.156  Sum_probs=80.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .++++||||+|.||++++++|.++|++|++++|......+......  ...++.++..|+.+..     +   .++|+||
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~--~~~~~~~~~~Di~~~~-----~---~~~D~Vi  189 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF--GNPRFELIRHDVVEPI-----L---LEVDQIY  189 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc--cCCceEEEECcccccc-----c---cCCCEEE
Confidence            4689999999999999999999999999999986432111111111  1234666777776532     2   2589999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |.|+...+....    ++....+++|+.++..+++++..    .+    .++|++||.+
T Consensus       190 HlAa~~~~~~~~----~~p~~~~~~Nv~gT~nLleaa~~----~g----~r~V~~SS~~  236 (436)
T PLN02166        190 HLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG----ARFLLTSTSE  236 (436)
T ss_pred             ECceeccchhhc----cCHHHHHHHHHHHHHHHHHHHHH----hC----CEEEEECcHH
Confidence            999865432211    12356789999999999887632    21    2799998863

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.13  E-value=8e-10  Score=83.96  Aligned_cols=100  Identities=24%  Similarity=0.279  Sum_probs=81.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      +||||++|.+|.++++.|. .++.|+.++|.+                      .|++|++.+.+++++. ++|++||+|
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~----------------------~Ditd~~~v~~~i~~~-~PDvVIn~A   58 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAE----------------------LDITDPDAVLEVIRET-RPDVVINAA   58 (281)
T ss_pred             EEEEcCCChHHHHHHHHhC-CCceEEeccCcc----------------------ccccChHHHHHHHHhh-CCCEEEECc
Confidence            9999999999999999999 778999888854                      7999999999999887 699999999


Q ss_pred             CCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          120 GVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +......-    .++.+..+.+|+.++.++.+++-.      .  ...+|.+||-.
T Consensus        59 Ayt~vD~a----E~~~e~A~~vNa~~~~~lA~aa~~------~--ga~lVhiSTDy  102 (281)
T COG1091          59 AYTAVDKA----ESEPELAFAVNATGAENLARAAAE------V--GARLVHISTDY  102 (281)
T ss_pred             cccccccc----cCCHHHHHHhHHHHHHHHHHHHHH------h--CCeEEEeecce
Confidence            97654322    233466799999999999998722      1  23899998753

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.11  E-value=2.3e-09  Score=89.89  Aligned_cols=125  Identities=17%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC---eEEEEecChhH---HHHHHHHH---------Hhhc--------CceEEE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA---RVSILARSGEK---LEEAKQSI---------QLAT--------GIEVAT   91 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~---~v~~~~r~~~~---~~~~~~~~---------~~~~--------~~~v~~   91 (179)
                      +++|+++||||+|.+|+.++++|++.+.   +|++..|....   .+...+++         ....        ..++..
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            5799999999999999999999998764   57888885432   22221121         1111        236888


Q ss_pred             EEeeCCCH------HHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCC
Q 030328           92 YSADVRDF------DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGP  165 (179)
Q Consensus        92 ~~~D~~~~------~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~  165 (179)
                      +..|++++      +..+.+.+   .+|++||+|+....       .+..+..+++|+.|+.++++.+...    +  ..
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~---~vDiVIH~AA~v~f-------~~~~~~a~~vNV~GT~nLLelA~~~----~--~l  260 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAK---EVDVIINSAANTTF-------DERYDVAIDINTRGPCHLMSFAKKC----K--KL  260 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHh---cCCEEEECcccccc-------ccCHHHHHHHHHHHHHHHHHHHHHc----C--CC
Confidence            99999986      23344433   58999999986542       1335667899999999999876321    1  12


Q ss_pred             cEEEEecccC
Q 030328          166 ASIALMSSQA  175 (179)
Q Consensus       166 ~~iv~iss~~  175 (179)
                      .+++.+||..
T Consensus       261 k~fV~vSTay  270 (605)
T PLN02503        261 KLFLQVSTAY  270 (605)
T ss_pred             CeEEEccCce
Confidence            3788888853

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=99.10  E-value=3e-10  Score=84.66  Aligned_cols=101  Identities=13%  Similarity=0.184  Sum_probs=72.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hhC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EAG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~~  110 (179)
                      +..-+.+=..++||||.++|++|+++|++|+++++...        +... .    ...+|+++.++++++++    .++
T Consensus        13 iD~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~~-~----~~~~Dv~d~~s~~~l~~~v~~~~g   79 (227)
T TIGR02114        13 IDSVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKPE-P----HPNLSIREIETTKDLLITLKELVQ   79 (227)
T ss_pred             CCCceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------cccc-c----CCcceeecHHHHHHHHHHHHHHcC
Confidence            33334444467899999999999999999999876311        1000 1    13478888888776654    357


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHH
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK  151 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~  151 (179)
                      ++|++|||||.....++.+.+.++|++++..   +.+.+.+
T Consensus        80 ~iDiLVnnAgv~d~~~~~~~s~e~~~~~~~~---~~~~~~~  117 (227)
T TIGR02114        80 EHDILIHSMAVSDYTPVYMTDLEQVQASDNL---NEFLSKQ  117 (227)
T ss_pred             CCCEEEECCEeccccchhhCCHHHHhhhcch---hhhhccc
Confidence            8999999999877778888999999877544   5555554

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.10  E-value=1.9e-09  Score=91.87  Aligned_cols=118  Identities=20%  Similarity=0.223  Sum_probs=81.8

Q ss_pred             EEEEEcCCCchHHHHHHHHH--HcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH------HHHHHHHHhhC
Q 030328           39 HVFITGGSSGIGLALAHQAA--KEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF------DAVKTALDEAG  110 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~--~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~v~~~~~~~~  110 (179)
                      ++|||||+|.||++++++|.  ++|++|++++|+... +............++..+.+|++++      +.++++    .
T Consensus         2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l----~   76 (657)
T PRK07201          2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL----G   76 (657)
T ss_pred             eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh----c
Confidence            69999999999999999999  589999999996532 1111111111124678889999984      333333    4


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++|++||+|+.....    .+   .....++|+.++..+++++..    .+   ..+++++||..
T Consensus        77 ~~D~Vih~Aa~~~~~----~~---~~~~~~~nv~gt~~ll~~a~~----~~---~~~~v~~SS~~  127 (657)
T PRK07201         77 DIDHVVHLAAIYDLT----AD---EEAQRAANVDGTRNVVELAER----LQ---AATFHHVSSIA  127 (657)
T ss_pred             CCCEEEECceeecCC----CC---HHHHHHHHhHHHHHHHHHHHh----cC---CCeEEEEeccc
Confidence            799999999864321    12   234578899999988887632    22   23899999864

>PLN02778 3,5-epimerase/4-reductase

Probab=99.08  E-value=2.2e-09  Score=83.19  Aligned_cols=91  Identities=13%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .+++|||||+|.||++++++|.++|++|+...                         .|+.+.+.+...++.. ++|++|
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~-------------------------~~~~~~~~v~~~l~~~-~~D~Vi   62 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS-------------------------GRLENRASLEADIDAV-KPTHVF   62 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec-------------------------CccCCHHHHHHHHHhc-CCCEEE
Confidence            46899999999999999999999999986432                         2344555566555544 589999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL  154 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  154 (179)
                      |.||....... +...++....+++|+.++..+++++.
T Consensus        63 H~Aa~~~~~~~-~~~~~~p~~~~~~Nv~gt~~ll~aa~   99 (298)
T PLN02778         63 NAAGVTGRPNV-DWCESHKVETIRANVVGTLTLADVCR   99 (298)
T ss_pred             ECCcccCCCCc-hhhhhCHHHHHHHHHHHHHHHHHHHH
Confidence            99997653221 11223445679999999999999873

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.05  E-value=3.5e-09  Score=75.97  Aligned_cols=81  Identities=28%  Similarity=0.391  Sum_probs=64.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      ++++||||+ |+|.+++++|+++|++|.+++|++++.+.....+..  ...+..+.+|++|.+++.+++++    .+++|
T Consensus         1 m~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~--~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id   77 (177)
T PRK08309          1 MHALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT--PESITPLPLDYHDDDALKLAIKSTIEKNGPFD   77 (177)
T ss_pred             CEEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCe
Confidence            368999997 777889999999999999999998776665544432  34677889999999999887765    47889


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+..-.
T Consensus        78 ~lv~~vh~   85 (177)
T PRK08309         78 LAVAWIHS   85 (177)
T ss_pred             EEEEeccc
Confidence            99887654

>PRK12320 hypothetical protein; Provisional

Probab=99.02  E-value=5.2e-09  Score=88.85  Aligned_cols=104  Identities=22%  Similarity=0.269  Sum_probs=77.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|.||++++++|.++|++|++++|++...          ....+.++.+|+++.. +.+.++   ++|++||.
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~----------~~~~ve~v~~Dl~d~~-l~~al~---~~D~VIHL   67 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA----------LDPRVDYVCASLRNPV-LQELAG---EADAVIHL   67 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc----------ccCCceEEEccCCCHH-HHHHhc---CCCEEEEc
Confidence            699999999999999999999999999999875321          1234677889999874 555444   68999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+....        +    ..++|+.++.++++++.    +.  +  .++|++||..|
T Consensus        68 Aa~~~~--------~----~~~vNv~Gt~nLleAA~----~~--G--vRiV~~SS~~G  105 (699)
T PRK12320         68 APVDTS--------A----PGGVGITGLAHVANAAA----RA--G--ARLLFVSQAAG  105 (699)
T ss_pred             CccCcc--------c----hhhHHHHHHHHHHHHHH----Hc--C--CeEEEEECCCC
Confidence            975311        1    12478999998888762    22  2  27999998754

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.01  E-value=1.5e-09  Score=85.15  Aligned_cols=124  Identities=20%  Similarity=0.271  Sum_probs=87.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +..+++||||+|.+|++++++|.+++  .++.++|..+....-..++... ...++.++.+|+.+..++...++   +. 
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~---~~-   77 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQ---GA-   77 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhcc---Cc-
Confidence            56799999999999999999999998  7799999876421111111111 35678899999998887777765   45 


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      .++|+|+...+.    ....+-+..+++|+.|+.++.+++..    .   +..++|.+||..
T Consensus        78 ~Vvh~aa~~~~~----~~~~~~~~~~~vNV~gT~nvi~~c~~----~---~v~~lIYtSs~~  128 (361)
T KOG1430|consen   78 VVVHCAASPVPD----FVENDRDLAMRVNVNGTLNVIEACKE----L---GVKRLIYTSSAY  128 (361)
T ss_pred             eEEEeccccCcc----ccccchhhheeecchhHHHHHHHHHH----h---CCCEEEEecCce
Confidence            566665543321    22224567899999999888887733    2   234899999864

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.00  E-value=3.8e-09  Score=81.02  Aligned_cols=97  Identities=22%  Similarity=0.226  Sum_probs=66.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      +|||||+|.||++++++|.++|++|++++|+++......    .   ..    ..|... .   ...+...++|++||+|
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~---~~----~~~~~~-~---~~~~~~~~~D~Vvh~a   65 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK----W---EG----YKPWAP-L---AESEALEGADAVINLA   65 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc----c---ee----eecccc-c---chhhhcCCCCEEEECC
Confidence            589999999999999999999999999999876432110    0   00    112221 1   1223345799999999


Q ss_pred             CCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          120 GVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      |.....  .+.+.+..+..+++|+.++..+++++
T Consensus        66 ~~~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~   97 (292)
T TIGR01777        66 GEPIAD--KRWTEERKQEIRDSRIDTTRALVEAI   97 (292)
T ss_pred             CCCccc--ccCCHHHHHHHHhcccHHHHHHHHHH
Confidence            864321  12344555677899999998888876

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=98.99  E-value=3.3e-09  Score=80.13  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             EEcCCCchHHHHHHHHHHcCC--eEEEEecChhH---HHHHHHHHH-----h----hcCceEEEEEeeCCCHH------H
Q 030328           42 ITGGSSGIGLALAHQAAKEGA--RVSILARSGEK---LEEAKQSIQ-----L----ATGIEVATYSADVRDFD------A  101 (179)
Q Consensus        42 ItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~---~~~~~~~~~-----~----~~~~~v~~~~~D~~~~~------~  101 (179)
                      ||||+|.+|.++.++|++++.  +|++..|..+.   .++..+.+.     .    ....++.++.+|++++.      +
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999986  89999997643   222222211     0    12568999999999843      3


Q ss_pred             HHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecc
Q 030328          102 VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSS  173 (179)
Q Consensus       102 v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss  173 (179)
                      .+++.+   .+|++||+|+......       ..++..++|+.|+..+++.+..       +...+++++||
T Consensus        81 ~~~L~~---~v~~IiH~Aa~v~~~~-------~~~~~~~~NV~gt~~ll~la~~-------~~~~~~~~iST  135 (249)
T PF07993_consen   81 YQELAE---EVDVIIHCAASVNFNA-------PYSELRAVNVDGTRNLLRLAAQ-------GKRKRFHYIST  135 (249)
T ss_dssp             HHHHHH---H--EEEE--SS-SBS--------S--EEHHHHHHHHHHHHHHHTS-------SS---EEEEEE
T ss_pred             hhcccc---ccceeeecchhhhhcc-------cchhhhhhHHHHHHHHHHHHHh-------ccCcceEEecc
Confidence            344433   6899999998654211       2233578999999999998731       11238999998

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.92  E-value=1.9e-08  Score=77.71  Aligned_cols=84  Identities=24%  Similarity=0.346  Sum_probs=63.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh---hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG---EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~---~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      .+++|+++|+|| ||+|++++..|++.|++ |++++|+.   ++.++..+++... +..+....+|+++.+++++.++  
T Consensus       123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-~~~~~~~~~d~~~~~~~~~~~~--  198 (289)
T PRK12548        123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-VPECIVNVYDLNDTEKLKAEIA--  198 (289)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-CCCceeEEechhhhhHHHhhhc--
Confidence            357899999999 69999999999999997 99999986   5666666655432 2334455678887777766555  


Q ss_pred             CCCcEEEecCCCC
Q 030328          110 GPVDVLVVNQGVF  122 (179)
Q Consensus       110 ~~id~li~~ag~~  122 (179)
                       ..|++||+....
T Consensus       199 -~~DilINaTp~G  210 (289)
T PRK12548        199 -SSDILVNATLVG  210 (289)
T ss_pred             -cCCEEEEeCCCC
Confidence             469999987544

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.88  E-value=1.3e-08  Score=81.58  Aligned_cols=80  Identities=25%  Similarity=0.329  Sum_probs=62.2

Q ss_pred             CcCCcEEEEEcC----------------CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC
Q 030328           34 PIKDRHVFITGG----------------SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR   97 (179)
Q Consensus        34 ~~~~k~vlItGa----------------~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~   97 (179)
                      +++||+++||||                +|.+|.++|++|+++|++|++++++.+ .+       . + ..  ...+|++
T Consensus       185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-------~-~-~~--~~~~dv~  252 (399)
T PRK05579        185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-------T-P-AG--VKRIDVE  252 (399)
T ss_pred             ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-------C-C-CC--cEEEccC
Confidence            368999999999                555999999999999999999998752 11       0 1 11  2467999


Q ss_pred             CHHHHHHHHHh-hCCCcEEEecCCCCCCC
Q 030328           98 DFDAVKTALDE-AGPVDVLVVNQGVFVPG  125 (179)
Q Consensus        98 ~~~~v~~~~~~-~~~id~li~~ag~~~~~  125 (179)
                      +.+++.+.+++ ++++|++|||||+....
T Consensus       253 ~~~~~~~~v~~~~~~~DilI~~Aav~d~~  281 (399)
T PRK05579        253 SAQEMLDAVLAALPQADIFIMAAAVADYR  281 (399)
T ss_pred             CHHHHHHHHHHhcCCCCEEEEcccccccc
Confidence            98888776654 67899999999986543

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.87  E-value=2.6e-08  Score=85.19  Aligned_cols=91  Identities=14%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .+++|||||+|.||++++++|.++|++|..                         ...|++|.+.+.+.++.. ++|++|
T Consensus       380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~-------------------------~~~~l~d~~~v~~~i~~~-~pd~Vi  433 (668)
T PLN02260        380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEY-------------------------GKGRLEDRSSLLADIRNV-KPTHVF  433 (668)
T ss_pred             CceEEEECCCchHHHHHHHHHHhCCCeEEe-------------------------eccccccHHHHHHHHHhh-CCCEEE
Confidence            457999999999999999999999988631                         113577888888887765 589999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL  154 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  154 (179)
                      |+|+....... +...++....+++|+.++.++++++.
T Consensus       434 h~Aa~~~~~~~-~~~~~~~~~~~~~N~~gt~~l~~a~~  470 (668)
T PLN02260        434 NAAGVTGRPNV-DWCESHKVETIRANVVGTLTLADVCR  470 (668)
T ss_pred             ECCcccCCCCC-ChHHhCHHHHHHHHhHHHHHHHHHHH
Confidence            99997653221 12233456779999999999999873

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.86  E-value=7.1e-08  Score=70.24  Aligned_cols=85  Identities=25%  Similarity=0.319  Sum_probs=67.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..+++++++|+|++|++|+++++.|+++|++|++++|+.++.++..+++....+..  ....|..+.+++.+.++   +.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~---~~   98 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEG--VGAVETSDDAARAAAIK---GA   98 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCc--EEEeeCCCHHHHHHHHh---cC
Confidence            35688999999999999999999999999999999999888877776664333333  44578888887777665   57


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |++|++.+..
T Consensus        99 diVi~at~~g  108 (194)
T cd01078          99 DVVFAAGAAG  108 (194)
T ss_pred             CEEEECCCCC
Confidence            8888876543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.85  E-value=2.4e-08  Score=76.73  Aligned_cols=73  Identities=15%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---hCC-CcE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---AGP-VDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~~~-id~  114 (179)
                      +++||||+|.+|++++++|.++|++|.+..|+++...          ...+....+|+.|++++++.++.   ... +|.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~----------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~   70 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA----------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA   70 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc----------CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence            3899999999999999999999999999999876431          01234467899999999988842   234 899


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      ++++++.
T Consensus        71 v~~~~~~   77 (285)
T TIGR03649        71 VYLVAPP   77 (285)
T ss_pred             EEEeCCC
Confidence            9888763

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.84  E-value=9.7e-09  Score=77.40  Aligned_cols=129  Identities=17%  Similarity=0.168  Sum_probs=94.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH--HHH-HHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL--EEA-KQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~--~~~-~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+|++||||-+|.=|.=+|+.|.++|+.|..+.|+....  ..+ ..+..-..+.++..+.+|++|...+.++++.. .+
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v-~P   79 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV-QP   79 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc-Cc
Confidence            368999999999999999999999999999998874422  111 01111123456889999999999999999887 58


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      |-+.|-|+..+.+    .+.++...+.+++..|+++++++. +.+. .   ...++-.-||.
T Consensus        80 dEIYNLaAQS~V~----vSFe~P~~T~~~~~iGtlrlLEai-R~~~-~---~~~rfYQAStS  132 (345)
T COG1089          80 DEIYNLAAQSHVG----VSFEQPEYTADVDAIGTLRLLEAI-RILG-E---KKTRFYQASTS  132 (345)
T ss_pred             hhheecccccccc----ccccCcceeeeechhHHHHHHHHH-HHhC-C---cccEEEecccH
Confidence            9899988866654    344555667899999999999875 2221 1   12466666553

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=98.80  E-value=1.5e-08  Score=88.46  Aligned_cols=139  Identities=20%  Similarity=0.325  Sum_probs=110.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHh--hcCceEEEEEeeCCCHHHHHHHHHh---h
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQL--ATGIEVATYSADVRDFDAVKTALDE---A  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~v~~~~~~---~  109 (179)
                      ..|.++|+|+-||.|..+|+||..+|++ +++++|+.-+.......+..  +.|..+..-..|++..+...++++.   .
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence            4789999999999999999999999998 77888887554433333332  3478888888888888888888765   5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++..++|-|.+..+.-+++.+++.|++.-+..+.++.++-+..-..-     ....++|..||++.-+|
T Consensus      1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C-----~~LdyFv~FSSvscGRG 1911 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREIC-----PELDYFVVFSSVSCGRG 1911 (2376)
T ss_pred             ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhC-----cccceEEEEEeecccCC
Confidence            788999999999999999999999999999999999999876542211     13458999999865443

>PLN00016 RNA-binding protein; Provisional

Probab=98.75  E-value=1.2e-07  Score=75.94  Aligned_cols=82  Identities=29%  Similarity=0.438  Sum_probs=57.2

Q ss_pred             cCCcEEEEE----cCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH----HHHhhcCceEEEEEeeCCCHHHHHHHH
Q 030328           35 IKDRHVFIT----GGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ----SIQLATGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        35 ~~~k~vlIt----Ga~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~----~~~~~~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      ...++++||    ||+|.||.+++++|.++|++|++++|+.........    .........+..+.+|+.|   +++++
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~  126 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKV  126 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhh
Confidence            346789999    999999999999999999999999998754322110    0000011236677888765   45555


Q ss_pred             HhhCCCcEEEecCC
Q 030328          107 DEAGPVDVLVVNQG  120 (179)
Q Consensus       107 ~~~~~id~li~~ag  120 (179)
                      . ...+|++||+++
T Consensus       127 ~-~~~~d~Vi~~~~  139 (378)
T PLN00016        127 A-GAGFDVVYDNNG  139 (378)
T ss_pred             c-cCCccEEEeCCC
Confidence            3 236899999876

>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function

Probab=98.72  E-value=6.4e-07  Score=68.86  Aligned_cols=122  Identities=16%  Similarity=0.240  Sum_probs=90.3

Q ss_pred             CCcEEEEEcC-CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           36 KDRHVFITGG-SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        36 ~~k~vlItGa-~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +.+.|+|.|. ...+++.+|.-|-++|+-|+++..+.++......+-    ..++.....|..++.+++..+++    ..
T Consensus         2 R~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~----~~dI~~L~ld~~~~~~~~~~l~~f~~~L~   77 (299)
T PF08643_consen    2 RKEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED----RPDIRPLWLDDSDPSSIHASLSRFASLLS   77 (299)
T ss_pred             ceeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc----CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence            3568899996 799999999999999999999999987665544432    34466666777555554443332    21


Q ss_pred             --------------CCcEEEecCC-CCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc
Q 030328          111 --------------PVDVLVVNQG-VFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ  161 (179)
Q Consensus       111 --------------~id~li~~ag-~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~  161 (179)
                                    .+..+|.-.. ....+|++.++.++|.+.++.|+..++.++|.++|+++.+.
T Consensus        78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~  143 (299)
T PF08643_consen   78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRS  143 (299)
T ss_pred             CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                          2344444333 23567889999999999999999999999999999998844

One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.70  E-value=9.4e-08  Score=76.47  Aligned_cols=80  Identities=34%  Similarity=0.432  Sum_probs=61.9

Q ss_pred             cCCcEEEEEcC---------------CCc-hHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC
Q 030328           35 IKDRHVFITGG---------------SSG-IGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD   98 (179)
Q Consensus        35 ~~~k~vlItGa---------------~~~-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~   98 (179)
                      ++||+++|||+               |+| +|.++|+++..+|++|++++++.+..      .    ...+  ...|+++
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~------~----~~~~--~~~~v~~  250 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL------T----PPGV--KSIKVST  250 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC------C----CCCc--EEEEecc
Confidence            68999999999               556 99999999999999999988765321      1    1112  4579999


Q ss_pred             HHHH-HHHHHh-hCCCcEEEecCCCCCCCC
Q 030328           99 FDAV-KTALDE-AGPVDVLVVNQGVFVPGE  126 (179)
Q Consensus        99 ~~~v-~~~~~~-~~~id~li~~ag~~~~~~  126 (179)
                      .+++ ++++++ .+.+|++|+|||+....+
T Consensus       251 ~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~  280 (390)
T TIGR00521       251 AEEMLEAALNELAKDFDIFISAAAVADFKP  280 (390)
T ss_pred             HHHHHHHHHHhhcccCCEEEEccccccccc
Confidence            8888 667644 467999999999876543

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.67  E-value=2.4e-07  Score=69.21  Aligned_cols=97  Identities=16%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             EEEEEc-CCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH-HHHHHHhhCCCcEEE
Q 030328           39 HVFITG-GSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA-VKTALDEAGPVDVLV  116 (179)
Q Consensus        39 ~vlItG-a~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-v~~~~~~~~~id~li  116 (179)
                      +=.||. ++|++|.++|++|+++|++|++++|+....        ......+..+.++  +.++ .+.+.+..+.+|++|
T Consensus        17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~~~~~~v~~i~v~--s~~~m~~~l~~~~~~~DivI   86 (229)
T PRK06732         17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------PEPHPNLSIIEIE--NVDDLLETLEPLVKDHDVLI   86 (229)
T ss_pred             ceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------CCCCCCeEEEEEe--cHHHHHHHHHHHhcCCCEEE
Confidence            445664 455699999999999999999998764210        0011234444443  2222 233334456789999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhH
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIG  145 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~  145 (179)
                      |+||.....+....+.+++..++++|...
T Consensus        87 h~AAvsd~~~~~~~~~~~~~~~~~v~~~~  115 (229)
T PRK06732         87 HSMAVSDYTPVYMTDLEEVSASDNLNEFL  115 (229)
T ss_pred             eCCccCCceehhhhhhhhhhhhhhhhhhh
Confidence            99998765555566788888888886544

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.60  E-value=5.7e-07  Score=67.76  Aligned_cols=114  Identities=22%  Similarity=0.283  Sum_probs=67.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ++|||++|.||++++.+|.+.|..|+++.|++...+...       ...+       ...+.+.+..+.  ++|+|||-|
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~-------~~~v-------~~~~~~~~~~~~--~~DavINLA   64 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL-------HPNV-------TLWEGLADALTL--GIDAVINLA   64 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc-------Cccc-------cccchhhhcccC--CCCEEEECC
Confidence            589999999999999999999999999999987544211       1111       112223333222  699999999


Q ss_pred             CCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          120 GVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       120 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |..-...  ..+++.=+..++.-    +..++.+.....+... .+..+++-| ..|.
T Consensus        65 G~~I~~r--rWt~~~K~~i~~SR----i~~T~~L~e~I~~~~~-~P~~~isaS-AvGy  114 (297)
T COG1090          65 GEPIAER--RWTEKQKEEIRQSR----INTTEKLVELIAASET-KPKVLISAS-AVGY  114 (297)
T ss_pred             CCccccc--cCCHHHHHHHHHHH----hHHHHHHHHHHHhccC-CCcEEEecc-eEEE
Confidence            9543211  03444333444433    3444555555554433 233455443 4443

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=98.60  E-value=1.1e-06  Score=80.70  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC----CeEEEEecChhHHHH---HHHHHHh------hcCceEEEEEeeCCCH---
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG----ARVSILARSGEKLEE---AKQSIQL------ATGIEVATYSADVRDF---   99 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g----~~v~~~~r~~~~~~~---~~~~~~~------~~~~~v~~~~~D~~~~---   99 (179)
                      ..++++||||+|.+|.+++++|.+++    .+|++..|+....+.   ..+....      ....++.++.+|++++   
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35799999999999999999999887    789988887543221   2111110      0113688889999754   


Q ss_pred             ---HHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          100 ---DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       100 ---~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                         +..+++.   ..+|++||+|+....    ..+   .......|+.|+..+++.+..    .   ...+++++||.+
T Consensus      1050 l~~~~~~~l~---~~~d~iiH~Aa~~~~----~~~---~~~~~~~nv~gt~~ll~~a~~----~---~~~~~v~vSS~~ 1111 (1389)
T TIGR03443      1050 LSDEKWSDLT---NEVDVIIHNGALVHW----VYP---YSKLRDANVIGTINVLNLCAE----G---KAKQFSFVSSTS 1111 (1389)
T ss_pred             cCHHHHHHHH---hcCCEEEECCcEecC----ccC---HHHHHHhHHHHHHHHHHHHHh----C---CCceEEEEeCee
Confidence               3333333   368999999986531    112   233456799999999887632    1   123899999864

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.56  E-value=3.3e-07  Score=69.29  Aligned_cols=119  Identities=24%  Similarity=0.266  Sum_probs=80.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +..+++++||||+|.||+++|.+|..+|..|++.|.-...-.+..+-  +.....+..+.-|+..     ++++   .+|
T Consensus        24 p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~--~~~~~~fel~~hdv~~-----pl~~---evD   93 (350)
T KOG1429|consen   24 PSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEH--WIGHPNFELIRHDVVE-----PLLK---EVD   93 (350)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcch--hccCcceeEEEeechh-----HHHH---Hhh
Confidence            35679999999999999999999999999999998754322111111  1123445566666643     3554   578


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      -++|-|+...+......+    -+++.+|..++..++..+.+-    +    .+++..|+.
T Consensus        94 ~IyhLAapasp~~y~~np----vktIktN~igtln~lglakrv----~----aR~l~aSTs  142 (350)
T KOG1429|consen   94 QIYHLAAPASPPHYKYNP----VKTIKTNVIGTLNMLGLAKRV----G----ARFLLASTS  142 (350)
T ss_pred             hhhhhccCCCCcccccCc----cceeeecchhhHHHHHHHHHh----C----ceEEEeecc
Confidence            888888876654433222    346889999999988776332    2    278777764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.56  E-value=4.9e-07  Score=71.92  Aligned_cols=78  Identities=29%  Similarity=0.503  Sum_probs=66.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      ++++|.|| |++|+.+|+.|+++| .+|++.||+.+++.++....    +.++.....|..+.+.+.+++++   .|++|
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~---~d~VI   73 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADVDALVALIKD---FDLVI   73 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccChHHHHHHHhc---CCEEE
Confidence            67899999 999999999999999 89999999988877665543    33788899999999999998885   49999


Q ss_pred             ecCCCCC
Q 030328          117 VNQGVFV  123 (179)
Q Consensus       117 ~~ag~~~  123 (179)
                      |++....
T Consensus        74 n~~p~~~   80 (389)
T COG1748          74 NAAPPFV   80 (389)
T ss_pred             EeCCchh
Confidence            9987544

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.54  E-value=2.3e-06  Score=67.25  Aligned_cols=121  Identities=19%  Similarity=0.288  Sum_probs=80.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChh---HHHHHHHHHH------hhcCceEEEEEeeCCCH------HH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE-GARVSILARSGE---KLEEAKQSIQ------LATGIEVATYSADVRDF------DA  101 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~---~~~~~~~~~~------~~~~~~v~~~~~D~~~~------~~  101 (179)
                      +++++|||+|.+|..+..+|..+ .++|++..|...   ..++..+.+.      .....++..+..|++.+      ..
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            57999999999999999998855 579999888554   2222222222      13366899999999853      22


Q ss_pred             HHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          102 VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       102 v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ..++.+   .+|.++||++..+--    .+   ..+....|+.|+..+++.+..       |....+.++||++
T Consensus        81 ~~~La~---~vD~I~H~gA~Vn~v----~p---Ys~L~~~NVlGT~evlrLa~~-------gk~Kp~~yVSsis  137 (382)
T COG3320          81 WQELAE---NVDLIIHNAALVNHV----FP---YSELRGANVLGTAEVLRLAAT-------GKPKPLHYVSSIS  137 (382)
T ss_pred             HHHHhh---hcceEEecchhhccc----Cc---HHHhcCcchHhHHHHHHHHhc-------CCCceeEEEeeee
Confidence            333333   599999999865411    12   234578899999998887622       1223577888764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.50  E-value=1.3e-06  Score=59.93  Aligned_cols=79  Identities=24%  Similarity=0.458  Sum_probs=59.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++++++++|.|| ||.|++++..|.+.|++ |+++.|+.++.++..+++.   +..+...  ++.+   +.+..+   ..
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~---~~~~~~~--~~~~---~~~~~~---~~   76 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG---GVNIEAI--PLED---LEEALQ---EA   76 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT---GCSEEEE--EGGG---HCHHHH---TE
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC---cccccee--eHHH---HHHHHh---hC
Confidence            579999999998 99999999999999988 9999999998888877762   2334333  3333   333444   68


Q ss_pred             cEEEecCCCCCC
Q 030328          113 DVLVVNQGVFVP  124 (179)
Q Consensus       113 d~li~~ag~~~~  124 (179)
                      |++||+.+....
T Consensus        77 DivI~aT~~~~~   88 (135)
T PF01488_consen   77 DIVINATPSGMP   88 (135)
T ss_dssp             SEEEE-SSTTST
T ss_pred             CeEEEecCCCCc
Confidence            999999876543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.44  E-value=1.5e-06  Score=69.79  Aligned_cols=76  Identities=28%  Similarity=0.454  Sum_probs=59.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           40 VFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      |+|.|+ |.+|+.+++.|++++-  +|++.+|+.+++++..+++   .+.++....+|+.|.++++++++   +.|++||
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~l~~~~~---~~dvVin   73 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL---LGDRVEAVQVDVNDPESLAELLR---GCDVVIN   73 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-----TTTTEEEEE--TTTHHHHHHHHT---TSSEEEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc---cccceeEEEEecCCHHHHHHHHh---cCCEEEE
Confidence            689999 9999999999998874  7999999999888776654   35678999999999999988887   4599999


Q ss_pred             cCCCC
Q 030328          118 NQGVF  122 (179)
Q Consensus       118 ~ag~~  122 (179)
                      ++|..
T Consensus        74 ~~gp~   78 (386)
T PF03435_consen   74 CAGPF   78 (386)
T ss_dssp             -SSGG
T ss_pred             CCccc
Confidence            99864

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK09620 hypothetical protein; Provisional

Probab=98.42  E-value=5.3e-07  Score=67.28  Aligned_cols=83  Identities=22%  Similarity=0.305  Sum_probs=53.3

Q ss_pred             cCCcEEEEEcCC----------------CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC
Q 030328           35 IKDRHVFITGGS----------------SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD   98 (179)
Q Consensus        35 ~~~k~vlItGa~----------------~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~   98 (179)
                      +.||+++||+|+                |.+|.++|++|.++|++|+++++.......   ...  .+.....+..|...
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~~--~~~~~~~V~s~~d~   75 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DIN--NQLELHPFEGIIDL   75 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---ccC--CceeEEEEecHHHH
Confidence            368999999886                999999999999999999988864321110   000  12222233332222


Q ss_pred             HHHHHHHHHhhCCCcEEEecCCCCC
Q 030328           99 FDAVKTALDEAGPVDVLVVNQGVFV  123 (179)
Q Consensus        99 ~~~v~~~~~~~~~id~li~~ag~~~  123 (179)
                      .+.+.+++++. ++|++||.|+...
T Consensus        76 ~~~l~~~~~~~-~~D~VIH~AAvsD   99 (229)
T PRK09620         76 QDKMKSIITHE-KVDAVIMAAAGSD   99 (229)
T ss_pred             HHHHHHHhccc-CCCEEEECccccc
Confidence            23455555433 5899999999754

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.40  E-value=4.5e-06  Score=63.35  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=61.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +.++||||+|.+|++++++|.++|++|.+..|+++......        ..+.....|+.+++.+...++   +.+.+++
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--------~~v~~~~~d~~~~~~l~~a~~---G~~~~~~   69 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--------GGVEVVLGDLRDPKSLVAGAK---GVDGVLL   69 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--------CCcEEEEeccCCHhHHHHHhc---cccEEEE
Confidence            46899999999999999999999999999999988765443        456778899999988877776   5777777


Q ss_pred             cCCCCC
Q 030328          118 NQGVFV  123 (179)
Q Consensus       118 ~ag~~~  123 (179)
                      ..+...
T Consensus        70 i~~~~~   75 (275)
T COG0702          70 ISGLLD   75 (275)
T ss_pred             Eecccc
Confidence            666433

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=98.36  E-value=4.2e-06  Score=67.92  Aligned_cols=126  Identities=15%  Similarity=0.263  Sum_probs=84.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcC---CeEEEEecChh---HHHHHH--------HHHHhh---cCceEEEEEeeC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEG---ARVSILARSGE---KLEEAK--------QSIQLA---TGIEVATYSADV   96 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g---~~v~~~~r~~~---~~~~~~--------~~~~~~---~~~~v~~~~~D~   96 (179)
                      .+++|+++||||+|.+|+-+..++++.-   -++++.-|...   ..+...        +.+.+.   .-.++..+.+|+
T Consensus         9 f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi   88 (467)
T KOG1221|consen    9 FYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI   88 (467)
T ss_pred             HhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence            4689999999999999999999999653   24677666432   111111        122211   124677788888


Q ss_pred             CCH------HHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEE
Q 030328           97 RDF------DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIAL  170 (179)
Q Consensus        97 ~~~------~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~  170 (179)
                      +++      .+...+.   ..+|++||.|+....       .|..+..+.+|..|+..+.+.+.. |.+-     ..++.
T Consensus        89 ~~~~LGis~~D~~~l~---~eV~ivih~AAtvrF-------de~l~~al~iNt~Gt~~~l~lak~-~~~l-----~~~vh  152 (467)
T KOG1221|consen   89 SEPDLGISESDLRTLA---DEVNIVIHSAATVRF-------DEPLDVALGINTRGTRNVLQLAKE-MVKL-----KALVH  152 (467)
T ss_pred             cCcccCCChHHHHHHH---hcCCEEEEeeeeecc-------chhhhhhhhhhhHhHHHHHHHHHH-hhhh-----heEEE
Confidence            763      2333222   379999999985442       255677799999999999986643 3322     27888


Q ss_pred             ecccC
Q 030328          171 MSSQA  175 (179)
Q Consensus       171 iss~~  175 (179)
                      +|++-
T Consensus       153 VSTAy  157 (467)
T KOG1221|consen  153 VSTAY  157 (467)
T ss_pred             eehhh
Confidence            88764

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.36  E-value=2.8e-06  Score=63.34  Aligned_cols=76  Identities=22%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      |+|+||+|.+|+.+++.|.+.+++|.+..|++...  ..+++.. .+.  ..+.+|+.|.+++.+.++   ++|.++.+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~--~~~~l~~-~g~--~vv~~d~~~~~~l~~al~---g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSD--RAQQLQA-LGA--EVVEADYDDPESLVAALK---GVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHH--HHHHHHH-TTT--EEEES-TT-HHHHHHHHT---TCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchh--hhhhhhc-ccc--eEeecccCCHHHHHHHHc---CCceEEeec
Confidence            68999999999999999999999999999987422  2222322 243  456999999999888887   689998888


Q ss_pred             CCCC
Q 030328          120 GVFV  123 (179)
Q Consensus       120 g~~~  123 (179)
                      +...
T Consensus        73 ~~~~   76 (233)
T PF05368_consen   73 PPSH   76 (233)
T ss_dssp             SCSC
T ss_pred             Ccch
Confidence            7543

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.36  E-value=3.1e-06  Score=69.29  Aligned_cols=78  Identities=27%  Similarity=0.401  Sum_probs=56.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+++|+++|+|+++ +|.++|+.|+++|++|.++|++. +..++..+++..   ..+..+..|..+        +..++.
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~---~~~~~~~~~~~~--------~~~~~~   69 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE---LGIELVLGEYPE--------EFLEGV   69 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh---cCCEEEeCCcch--------hHhhcC
Confidence            46789999999877 99999999999999999999975 334433344432   124456666654        123478


Q ss_pred             cEEEecCCCCC
Q 030328          113 DVLVVNQGVFV  123 (179)
Q Consensus       113 d~li~~ag~~~  123 (179)
                      |++|+++|...
T Consensus        70 d~vv~~~g~~~   80 (450)
T PRK14106         70 DLVVVSPGVPL   80 (450)
T ss_pred             CEEEECCCCCC
Confidence            99999998643

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.31  E-value=6e-06  Score=64.90  Aligned_cols=74  Identities=22%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHc-C-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKE-G-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~-g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      ++.+|+++||||+|.||+.+|++|+++ | .+++++.|+++++++..+++..          .|+   .++++.+   ..
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~----------~~i---~~l~~~l---~~  215 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG----------GKI---LSLEEAL---PE  215 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc----------ccH---HhHHHHH---cc
Confidence            578999999999999999999999864 5 5799999998877766554321          122   2233333   36


Q ss_pred             CcEEEecCCCCC
Q 030328          112 VDVLVVNQGVFV  123 (179)
Q Consensus       112 id~li~~ag~~~  123 (179)
                      .|++++.++...
T Consensus       216 aDiVv~~ts~~~  227 (340)
T PRK14982        216 ADIVVWVASMPK  227 (340)
T ss_pred             CCEEEECCcCCc
Confidence            889999888643

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=98.26  E-value=1.4e-05  Score=56.87  Aligned_cols=74  Identities=23%  Similarity=0.328  Sum_probs=60.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +++.|.||+|-.|+.++++..++|..|+++.|++.+....         ..+...+.|+.|++++.+.+.   +.|++|.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---------~~~~i~q~Difd~~~~a~~l~---g~DaVIs   68 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---------QGVTILQKDIFDLTSLASDLA---GHDAVIS   68 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---------ccceeecccccChhhhHhhhc---CCceEEE
Confidence            3678999999999999999999999999999998754321         235567899999988866665   6899999


Q ss_pred             cCCCCC
Q 030328          118 NQGVFV  123 (179)
Q Consensus       118 ~ag~~~  123 (179)
                      .-|...
T Consensus        69 A~~~~~   74 (211)
T COG2910          69 AFGAGA   74 (211)
T ss_pred             eccCCC
Confidence            887643

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.20  E-value=1.3e-05  Score=62.66  Aligned_cols=118  Identities=17%  Similarity=0.155  Sum_probs=73.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +.+++.|+|++|.+|..++..++.++  .++.++|++..  +....++.. ...  .....+.+++.+..+.++   ..|
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~--~g~a~Dl~~-~~~--~~~v~~~td~~~~~~~l~---gaD   78 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA--PGVAADLSH-IDT--PAKVTGYADGELWEKALR---GAD   78 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC--cccccchhh-cCc--CceEEEecCCCchHHHhC---CCC
Confidence            56699999999999999999999655  56999999322  111112211 111  223345555444333333   789


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ++|+++|....+      .+++.+.+..|+...-.+.+++    ++.+   +.+++.++|.
T Consensus        79 vVVitaG~~~~~------~~tR~dll~~N~~i~~~i~~~i----~~~~---~~~iviv~SN  126 (321)
T PTZ00325         79 LVLICAGVPRKP------GMTRDDLFNTNAPIVRDLVAAV----ASSA---PKAIVGIVSN  126 (321)
T ss_pred             EEEECCCCCCCC------CCCHHHHHHHHHHHHHHHHHHH----HHHC---CCeEEEEecC
Confidence            999999974321      1234566888887776666654    4333   2367777653

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=98.14  E-value=0.00022  Score=59.54  Aligned_cols=126  Identities=17%  Similarity=0.158  Sum_probs=88.7

Q ss_pred             CCCcCcCCcEEEEEcCC-CchHHHHHHHHHHcCCeEEEEecChhH-HHHHHHHHHh---hcCceEEEEEeeCCCHHHHHH
Q 030328           30 PVRIPIKDRHVFITGGS-SGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQL---ATGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~-~~iG~~la~~l~~~g~~v~~~~r~~~~-~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~  104 (179)
                      +...+..+++++||||+ +.||.+++.+|+..|++|+++..+-.+ --+..+.+..   .++.....+++++.+..+++.
T Consensus       389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdA  468 (866)
T COG4982         389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDA  468 (866)
T ss_pred             CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHH
Confidence            44556789999999998 889999999999999999998766442 2233334433   346678888999999999988


Q ss_pred             HHHhh------------------CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHH
Q 030328          105 ALDEA------------------GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL  156 (179)
Q Consensus       105 ~~~~~------------------~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  156 (179)
                      +++-.                  -.++.++-.|.+...+.+.+..++. +..+.+-+++..+++-.+.+.
T Consensus       469 lIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsra-E~~~rilLw~V~Rliggl~~~  537 (866)
T COG4982         469 LIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRA-EFAMRILLWNVLRLIGGLKKQ  537 (866)
T ss_pred             HHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCchH-HHHHHHHHHHHHHHHHHhhhh
Confidence            87521                  1357777778777666666655433 344566666666766655444

>PLN00106 malate dehydrogenase

Probab=98.09  E-value=2.3e-05  Score=61.42  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=66.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ...+++.|+|++|.+|.+++..|+.++.  ++.++|.++.  +....++.. .....  ...++++.+++.+.+   ...
T Consensus        16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~a~Dl~~-~~~~~--~i~~~~~~~d~~~~l---~~a   87 (323)
T PLN00106         16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGVAADVSH-INTPA--QVRGFLGDDQLGDAL---KGA   87 (323)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--CeeEchhhh-CCcCc--eEEEEeCCCCHHHHc---CCC
Confidence            4567999999999999999999997664  6999999772  111112211 11111  223433333333433   479


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      |++|+.||....+      .+.+++.+..|+.....+.+.+
T Consensus        88 DiVVitAG~~~~~------g~~R~dll~~N~~i~~~i~~~i  122 (323)
T PLN00106         88 DLVIIPAGVPRKP------GMTRDDLFNINAGIVKTLCEAV  122 (323)
T ss_pred             CEEEEeCCCCCCC------CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999975431      1235567888888776666654

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.07  E-value=2.6e-05  Score=60.90  Aligned_cols=81  Identities=23%  Similarity=0.291  Sum_probs=69.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHH----cCCeEEEEecChhHHHHHHHHHHhhc----CceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           39 HVFITGGSSGIGLALAHQAAK----EGARVSILARSGEKLEEAKQSIQLAT----GIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~----~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      -++|-||+|..|.-+..++.+    .|.+.-+..|+++++++..++.....    ...+ .+.+|.+|++++++..+   
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak---   82 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAK---   82 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHh---
Confidence            478999999999999999998    78889999999999999988876543    3344 78999999999999988   


Q ss_pred             CCcEEEecCCCCC
Q 030328          111 PVDVLVVNQGVFV  123 (179)
Q Consensus       111 ~id~li~~ag~~~  123 (179)
                      ...+++|++|+..
T Consensus        83 ~~~vivN~vGPyR   95 (423)
T KOG2733|consen   83 QARVIVNCVGPYR   95 (423)
T ss_pred             hhEEEEeccccce
Confidence            4689999999753

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.05  E-value=5.2e-05  Score=52.89  Aligned_cols=76  Identities=24%  Similarity=0.332  Sum_probs=54.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++++++|+|+ |++|.++++.|.+.| .+|.+++|++++.++..+++... .     +..+..+.++   .   ....|
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-~-----~~~~~~~~~~---~---~~~~D   83 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-G-----IAIAYLDLEE---L---LAEAD   83 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-c-----cceeecchhh---c---cccCC
Confidence            56889999998 899999999999996 78999999988777666554321 0     1223333322   2   34789


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|++.....
T Consensus        84 vvi~~~~~~~   93 (155)
T cd01065          84 LIINTTPVGM   93 (155)
T ss_pred             EEEeCcCCCC
Confidence            9999987543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=98.02  E-value=4e-05  Score=58.35  Aligned_cols=120  Identities=18%  Similarity=0.157  Sum_probs=83.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ..|-++=|.||+|.+|+-++.+|++.|-.|++-+|-.+......+-...  -+++-+...|+.|+++++++++   +-++
T Consensus        59 ~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGd--LGQvl~~~fd~~DedSIr~vvk---~sNV  133 (391)
T KOG2865|consen   59 VSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGD--LGQVLFMKFDLRDEDSIRAVVK---HSNV  133 (391)
T ss_pred             ccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeeccc--ccceeeeccCCCCHHHHHHHHH---hCcE
Confidence            3455778889999999999999999999999999866532222111111  2457888999999999999987   5689


Q ss_pred             EEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +||-.|---+ +.+   +-      -++|..++-.+.+.+-.       .+..++|.+|+..
T Consensus       134 VINLIGrd~eTknf---~f------~Dvn~~~aerlAricke-------~GVerfIhvS~Lg  179 (391)
T KOG2865|consen  134 VINLIGRDYETKNF---SF------EDVNVHIAERLARICKE-------AGVERFIHVSCLG  179 (391)
T ss_pred             EEEeeccccccCCc---cc------ccccchHHHHHHHHHHh-------hChhheeehhhcc
Confidence            9999884221 111   11      35677777776666522       2355788887654

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.02  E-value=3.8e-05  Score=61.54  Aligned_cols=127  Identities=20%  Similarity=0.262  Sum_probs=77.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH-HHHHHHHHhhC-CC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF-DAVKTALDEAG-PV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~v~~~~~~~~-~i  112 (179)
                      .+...++|+||+|++|+-+.+.|.++|+.|.+..|+.++.+.........  .....+..|.... +......+... ..
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d--~~~~~v~~~~~~~~d~~~~~~~~~~~~~  154 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVD--LGLQNVEADVVTAIDILKKLVEAVPKGV  154 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccc--cccceeeeccccccchhhhhhhhccccc
Confidence            45678999999999999999999999999999999988776654411111  1122233333333 33344444432 23


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      .+++-++|......  +     ...-..+...|+.++.+++..    .   +..+++++||+.+.
T Consensus       155 ~~v~~~~ggrp~~e--d-----~~~p~~VD~~g~knlvdA~~~----a---Gvk~~vlv~si~~~  205 (411)
T KOG1203|consen  155 VIVIKGAGGRPEEE--D-----IVTPEKVDYEGTKNLVDACKK----A---GVKRVVLVGSIGGT  205 (411)
T ss_pred             eeEEecccCCCCcc--c-----CCCcceecHHHHHHHHHHHHH----h---CCceEEEEEeecCc
Confidence            45666665433221  1     111235566777777887722    1   24489999887653

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=98.02  E-value=1.2e-05  Score=60.87  Aligned_cols=124  Identities=15%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHH-HHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKL-EEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +.++|||+.|.||...+..++..  .++.+.+|.-.-.. ....++..  ...+..++..|+.+...+.-+++.- ++|.
T Consensus         7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~--n~p~ykfv~~di~~~~~~~~~~~~~-~id~   83 (331)
T KOG0747|consen    7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVR--NSPNYKFVEGDIADADLVLYLFETE-EIDT   83 (331)
T ss_pred             ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhc--cCCCceEeeccccchHHHHhhhccC-chhh
Confidence            89999999999999999999975  45555555422111 11222222  2466788999999988887777654 8999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ++|.|...+.....-.+    -...+.|+.++..+++...-      -|+..++|.+|+.
T Consensus        84 vihfaa~t~vd~s~~~~----~~~~~nnil~t~~Lle~~~~------sg~i~~fvhvSTd  133 (331)
T KOG0747|consen   84 VIHFAAQTHVDRSFGDS----FEFTKNNILSTHVLLEAVRV------SGNIRRFVHVSTD  133 (331)
T ss_pred             hhhhHhhhhhhhhcCch----HHHhcCCchhhhhHHHHHHh------ccCeeEEEEeccc
Confidence            99999866542211112    23367899999999988733      2356699999975

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=97.92  E-value=3.6e-05  Score=57.43  Aligned_cols=112  Identities=14%  Similarity=0.116  Sum_probs=82.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH-HH----hhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS-IQ----LATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~-~~----~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .|++||||=+|.=|+-++..|+++|++|..+-|+........-+ +.    ...+........|++|...+.+++... +
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i-k  106 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI-K  106 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc-C
Confidence            46899999999999999999999999999887766543322222 11    233667888899999999999998876 4


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      ++=+.|-|+..+..-..++    .+.+-++.+.|++.++.+.
T Consensus       107 PtEiYnLaAQSHVkvSFdl----peYTAeVdavGtLRlLdAi  144 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDL----PEYTAEVDAVGTLRLLDAI  144 (376)
T ss_pred             chhhhhhhhhcceEEEeec----ccceeeccchhhhhHHHHH
Confidence            5667777776665432222    2445678899999988765

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.90  E-value=8.4e-05  Score=62.13  Aligned_cols=47  Identities=34%  Similarity=0.537  Sum_probs=41.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.++..+++
T Consensus       376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l  422 (529)
T PLN02520        376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV  422 (529)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            467899999999 69999999999999999999999988777665544

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.88  E-value=0.00018  Score=55.13  Aligned_cols=76  Identities=25%  Similarity=0.326  Sum_probs=54.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .++|+++|+|+ ||+|++++..|++.|++|.+++|++++.++..+++... + .....  +   .++   .  .....|+
T Consensus       115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~-~-~~~~~--~---~~~---~--~~~~~Di  181 (270)
T TIGR00507       115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY-G-EIQAF--S---MDE---L--PLHRVDL  181 (270)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc-C-ceEEe--c---hhh---h--cccCccE
Confidence            46889999999 69999999999999999999999988877776665421 1 11211  1   111   1  1236899


Q ss_pred             EEecCCCCC
Q 030328          115 LVVNQGVFV  123 (179)
Q Consensus       115 li~~ag~~~  123 (179)
                      +||+.+...
T Consensus       182 vInatp~gm  190 (270)
T TIGR00507       182 IINATSAGM  190 (270)
T ss_pred             EEECCCCCC
Confidence            999987643

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.86  E-value=4.5e-05  Score=59.94  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=63.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC-------CeEEEEecChhH--HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG-------ARVSILARSGEK--LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g-------~~v~~~~r~~~~--~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +++||||+|.+|.+++..|..++       .++.++|+++..  ++....++..    -......|+....++.+.+   
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d----~~~~~~~~~~~~~~~~~~l---   76 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD----CAFPLLKSVVATTDPEEAF---   76 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh----ccccccCCceecCCHHHHh---
Confidence            58999999999999999999854       589999996531  1111111100    0001111332223333333   


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ...|++|+.||.....   ..+.   .+.++.|+.=    .+...+.+.+... ..+.++++|
T Consensus        77 ~~aDiVI~tAG~~~~~---~~~R---~~l~~~N~~i----~~~i~~~i~~~~~-~~~iiivvs  128 (325)
T cd01336          77 KDVDVAILVGAMPRKE---GMER---KDLLKANVKI----FKEQGEALDKYAK-KNVKVLVVG  128 (325)
T ss_pred             CCCCEEEEeCCcCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCC-CCeEEEEec
Confidence            4799999999975432   1233   3346666643    3444444544421 123555554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.85  E-value=5.2e-05  Score=62.01  Aligned_cols=80  Identities=23%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++|+++|||+++ +|.+.|+.|+++|++|++.|++........+++.. .+.+  ....+  +..++   .+  .++|
T Consensus         2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~-~g~~--~~~~~--~~~~~---~~--~~~d   70 (447)
T PRK02472          2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLE-EGIK--VICGS--HPLEL---LD--EDFD   70 (447)
T ss_pred             CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHh-cCCE--EEeCC--CCHHH---hc--CcCC
Confidence            35789999999975 99999999999999999999876443333333432 2332  22211  12221   22  1489


Q ss_pred             EEEecCCCCCC
Q 030328          114 VLVVNQGVFVP  124 (179)
Q Consensus       114 ~li~~ag~~~~  124 (179)
                      .+|+++|....
T Consensus        71 ~vV~s~gi~~~   81 (447)
T PRK02472         71 LMVKNPGIPYT   81 (447)
T ss_pred             EEEECCCCCCC
Confidence            99999997654

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.83  E-value=0.00087  Score=53.68  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=55.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +..++++|.|+ |.+|+..++.+...|++|+++++++++.+......    +..   +..+..+.+++.+.++   ..|+
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~----g~~---v~~~~~~~~~l~~~l~---~aDv  233 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF----GGR---IHTRYSNAYEIEDAVK---RADL  233 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc----Cce---eEeccCCHHHHHHHHc---cCCE
Confidence            56778999988 79999999999999999999999987665443322    222   2234455666655544   6899


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      +|++++.
T Consensus       234 VI~a~~~  240 (370)
T TIGR00518       234 LIGAVLI  240 (370)
T ss_pred             EEEcccc
Confidence            9998865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.79  E-value=0.00017  Score=55.70  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=54.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+.+|+++|.|+ ||.|++++..|++.|+ +|++++|+.++.+...+++...... ....  ..   +++.+.   ....
T Consensus       124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~-~~~~--~~---~~~~~~---~~~a  193 (284)
T PRK12549        124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPA-ARAT--AG---SDLAAA---LAAA  193 (284)
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCC-eEEE--ec---cchHhh---hCCC
Confidence            357899999999 8899999999999997 6999999999888877776433221 1211  11   112222   2368


Q ss_pred             cEEEecC
Q 030328          113 DVLVVNQ  119 (179)
Q Consensus       113 d~li~~a  119 (179)
                      |++||+.
T Consensus       194 DiVInaT  200 (284)
T PRK12549        194 DGLVHAT  200 (284)
T ss_pred             CEEEECC
Confidence            9999994

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.78  E-value=0.00019  Score=55.33  Aligned_cols=79  Identities=15%  Similarity=0.113  Sum_probs=54.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++|+++|.|+ ||.+++++..|++.|+ +|+++.|+.++.++..+++...  ..+    ..+...+++..   .....|
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~--~~~----~~~~~~~~~~~---~~~~~D  192 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV--GVI----TRLEGDSGGLA---IEKAAE  192 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc--Ccc----eeccchhhhhh---cccCCC
Confidence            57899999998 9999999999999997 5999999998888777665321  111    11111122222   224689


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++||+.....
T Consensus       193 iVInaTp~g~  202 (282)
T TIGR01809       193 VLVSTVPADV  202 (282)
T ss_pred             EEEECCCCCC
Confidence            9999976543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.76  E-value=0.00057  Score=52.73  Aligned_cols=80  Identities=19%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++|+++|.|| ||.+++++..|++.|+ ++++++|+.++.++..+.+....+.... ...+   ..++++..   ...|
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~-~~~~---~~~~~~~~---~~~d  196 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAV-VGVD---ARGIEDVI---AAAD  196 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceE-EecC---HhHHHHHH---hhcC
Confidence            56899999999 8999999999999997 5889999998888877765432222211 1122   22222222   2579


Q ss_pred             EEEecCCCC
Q 030328          114 VLVVNQGVF  122 (179)
Q Consensus       114 ~li~~ag~~  122 (179)
                      ++||+....
T Consensus       197 ivINaTp~G  205 (283)
T PRK14027        197 GVVNATPMG  205 (283)
T ss_pred             EEEEcCCCC
Confidence            999986543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.75  E-value=0.00021  Score=54.94  Aligned_cols=79  Identities=25%  Similarity=0.399  Sum_probs=56.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..++++++|.|| ||.+++++..|++.|+ +++++.|+.++.++..+.+..... .+  ...+..+.+..+       ..
T Consensus       123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~-~~--~~~~~~~~~~~~-------~~  191 (283)
T COG0169         123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA-AV--EAAALADLEGLE-------EA  191 (283)
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc-cc--cccccccccccc-------cc
Confidence            346899999999 8999999999999995 699999999998888877654321 11  112222222211       57


Q ss_pred             cEEEecCCCCC
Q 030328          113 DVLVVNQGVFV  123 (179)
Q Consensus       113 d~li~~ag~~~  123 (179)
                      |++||+.....
T Consensus       192 dliINaTp~Gm  202 (283)
T COG0169         192 DLLINATPVGM  202 (283)
T ss_pred             CEEEECCCCCC
Confidence            99999876543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.73  E-value=0.0011  Score=52.13  Aligned_cols=76  Identities=29%  Similarity=0.401  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~  114 (179)
                      ++++||+||+||+|....+.....|++++++..++++.+ ..+++    +.+..   .|..+.+-.+++.+..  .++|+
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~l----GAd~v---i~y~~~~~~~~v~~~t~g~gvDv  214 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKEL----GADHV---INYREEDFVEQVRELTGGKGVDV  214 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhc----CCCEE---EcCCcccHHHHHHHHcCCCCceE
Confidence            999999999999999999999999988777777766554 33322    33321   2333322222222221  25788


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      ++...|
T Consensus       215 v~D~vG  220 (326)
T COG0604         215 VLDTVG  220 (326)
T ss_pred             EEECCC
Confidence            877776

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.72  E-value=0.00049  Score=54.41  Aligned_cols=72  Identities=24%  Similarity=0.406  Sum_probs=49.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh---------------------hHHHHHHHHHHhh-cCceE
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG---------------------EKLEEAKQSIQLA-TGIEV   89 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~---------------------~~~~~~~~~~~~~-~~~~v   89 (179)
                      ..+++++|+|.|+ ||+|.++|+.|+..|. ++.++|++.                     .+.+...+.+... +..++
T Consensus        20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i   98 (338)
T PRK12475         20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI   98 (338)
T ss_pred             HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence            3578899999998 8899999999999997 688899874                     1233333444332 35666


Q ss_pred             EEEEeeCCCHHHHHHHH
Q 030328           90 ATYSADVRDFDAVKTAL  106 (179)
Q Consensus        90 ~~~~~D~~~~~~v~~~~  106 (179)
                      ..+..|++. +.+++++
T Consensus        99 ~~~~~~~~~-~~~~~~~  114 (338)
T PRK12475         99 VPVVTDVTV-EELEELV  114 (338)
T ss_pred             EEEeccCCH-HHHHHHh
Confidence            667767653 3444443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.72  E-value=0.0011  Score=51.80  Aligned_cols=112  Identities=21%  Similarity=0.273  Sum_probs=67.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhc---CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLAT---GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +++.|.|+ |++|.++|..|+.+|  .+++++|++++..+....++....   +...... .  .+.+       .....
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~-------~l~~a   69 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYS-------DCKDA   69 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHH-------HhCCC
Confidence            36889997 899999999999999  479999999887776666654221   1222111 1  2222       12478


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      |++|+++|....+   .++..+   .++.|+.-    .+...+.+.+...  .+.++++|
T Consensus        70 DIVIitag~~~~~---g~~R~d---ll~~N~~i----~~~~~~~i~~~~~--~~~vivvs  117 (306)
T cd05291          70 DIVVITAGAPQKP---GETRLD---LLEKNAKI----MKSIVPKIKASGF--DGIFLVAS  117 (306)
T ss_pred             CEEEEccCCCCCC---CCCHHH---HHHHHHHH----HHHHHHHHHHhCC--CeEEEEec
Confidence            9999999975432   123333   35555433    3444444444332  33555554

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.70  E-value=0.0004  Score=55.07  Aligned_cols=79  Identities=32%  Similarity=0.347  Sum_probs=56.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~id  113 (179)
                      -+++.+||.||+||+|.+.+|-....|+..+++.++.+..+ ..    +..|.+   ...|..+++-++++.+. .+++|
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~-l~----k~lGAd---~vvdy~~~~~~e~~kk~~~~~~D  227 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE-LV----KKLGAD---EVVDYKDENVVELIKKYTGKGVD  227 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH-HH----HHcCCc---EeecCCCHHHHHHHHhhcCCCcc
Confidence            46889999999999999999999999955566666555443 22    223443   34577776555555443 56899


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      +++-+.|.
T Consensus       228 vVlD~vg~  235 (347)
T KOG1198|consen  228 VVLDCVGG  235 (347)
T ss_pred             EEEECCCC
Confidence            99999886

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.68  E-value=0.00036  Score=54.86  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=36.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQ   79 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~   79 (179)
                      +.+++|+||+|++|.+.++.+...|+ +|+++++++++.+...+
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~  198 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS  198 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            38999999999999999998889999 79999988776554443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.66  E-value=0.00076  Score=52.16  Aligned_cols=82  Identities=23%  Similarity=0.327  Sum_probs=52.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      .+++|+++|.|| ||-+++++..|++.|+ +++++.|+++   +.++..+++....+..+..  .+.   ++.+.+.+..
T Consensus       121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~--~~~---~~~~~l~~~~  194 (288)
T PRK12749        121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV--TDL---ADQQAFAEAL  194 (288)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE--ech---hhhhhhhhhc
Confidence            468899999998 6669999999999996 5889999853   5555555543222222222  122   1111122233


Q ss_pred             CCCcEEEecCCC
Q 030328          110 GPVDVLVVNQGV  121 (179)
Q Consensus       110 ~~id~li~~ag~  121 (179)
                      ...|++||+...
T Consensus       195 ~~aDivINaTp~  206 (288)
T PRK12749        195 ASADILTNGTKV  206 (288)
T ss_pred             ccCCEEEECCCC
Confidence            468999998654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.65  E-value=0.00072  Score=49.56  Aligned_cols=83  Identities=23%  Similarity=0.360  Sum_probs=56.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh-------------------hHHHHHHHHHHh-hcCceEEE
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG-------------------EKLEEAKQSIQL-ATGIEVAT   91 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~-~~~~~v~~   91 (179)
                      ..+.+++++|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+...+.+.. .+..++..
T Consensus        17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~   95 (202)
T TIGR02356        17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA   95 (202)
T ss_pred             HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4578899999997 8999999999999997 688998872                   233444444433 23445555


Q ss_pred             EEeeCCCHHHHHHHHHhhCCCcEEEecCC
Q 030328           92 YSADVRDFDAVKTALDEAGPVDVLVVNQG  120 (179)
Q Consensus        92 ~~~D~~~~~~v~~~~~~~~~id~li~~ag  120 (179)
                      +..++++ +++++.++   ..|++|.+..
T Consensus        96 ~~~~i~~-~~~~~~~~---~~D~Vi~~~d  120 (202)
T TIGR02356        96 LKERVTA-ENLELLIN---NVDLVLDCTD  120 (202)
T ss_pred             ehhcCCH-HHHHHHHh---CCCEEEECCC
Confidence            5555543 44555544   6788887764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=97.63  E-value=0.00093  Score=51.39  Aligned_cols=78  Identities=22%  Similarity=0.322  Sum_probs=58.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH-hh-CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD-EA-GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~-~~-~~id  113 (179)
                      .|++++|++|+|..|.-..+--.-+|++|+.+...+++..-..+++    +.+.   ..|..+. ++.+.++ .. ..+|
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l----GfD~---~idyk~~-d~~~~L~~a~P~GID  221 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL----GFDA---GIDYKAE-DFAQALKEACPKGID  221 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc----CCce---eeecCcc-cHHHHHHHHCCCCeE
Confidence            5999999999999999888887789999999999998877666655    3332   2344444 4444443 33 4799


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      +.+-|.|.
T Consensus       222 vyfeNVGg  229 (340)
T COG2130         222 VYFENVGG  229 (340)
T ss_pred             EEEEcCCc
Confidence            99999984

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.63  E-value=0.00019  Score=55.20  Aligned_cols=76  Identities=21%  Similarity=0.358  Sum_probs=54.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+++|+++|+|+ ||+|++++..|.+.| .+|++++|+.++.++..+++... . .+.+   +.    +..   +.....
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-~-~~~~---~~----~~~---~~~~~~  186 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-G-KAEL---DL----ELQ---EELADF  186 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-c-ceee---cc----cch---hccccC
Confidence            468899999998 899999999999999 78999999998887776665321 1 1111   11    111   222468


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |++||+....
T Consensus       187 DivInaTp~g  196 (278)
T PRK00258        187 DLIINATSAG  196 (278)
T ss_pred             CEEEECCcCC
Confidence            9999987544

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.63  E-value=0.00063  Score=50.73  Aligned_cols=75  Identities=24%  Similarity=0.416  Sum_probs=55.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +.++|.|+ |.+|..+|+.|.++|++|++++++++..++...+     ......+.+|-++++-++++  .....|+++-
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~-----~~~~~~v~gd~t~~~~L~~a--gi~~aD~vva   72 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD-----ELDTHVVIGDATDEDVLEEA--GIDDADAVVA   72 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh-----hcceEEEEecCCCHHHHHhc--CCCcCCEEEE
Confidence            46788888 8999999999999999999999999877653331     13456788899988766554  1235677766


Q ss_pred             cCC
Q 030328          118 NQG  120 (179)
Q Consensus       118 ~ag  120 (179)
                      ..|
T Consensus        73 ~t~   75 (225)
T COG0569          73 ATG   75 (225)
T ss_pred             eeC
Confidence            555

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.62  E-value=0.00044  Score=56.10  Aligned_cols=76  Identities=14%  Similarity=0.275  Sum_probs=54.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++.+++++|.|+ |++|++++..|++.|+ +++++.|+.++.+...+++.   ...  .     ...+++.+.+   ...
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~---~~~--~-----~~~~~l~~~l---~~a  243 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR---NAS--A-----HYLSELPQLI---KKA  243 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc---CCe--E-----ecHHHHHHHh---ccC
Confidence            468899999999 9999999999999996 58899999887766655442   111  1     1123333333   367


Q ss_pred             cEEEecCCCCC
Q 030328          113 DVLVVNQGVFV  123 (179)
Q Consensus       113 d~li~~ag~~~  123 (179)
                      |++|++.+..+
T Consensus       244 DiVI~aT~a~~  254 (414)
T PRK13940        244 DIIIAAVNVLE  254 (414)
T ss_pred             CEEEECcCCCC
Confidence            99999887643

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00025  Score=52.35  Aligned_cols=84  Identities=15%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCe---EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGAR---VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~---v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++++|||++|-+|+|+.+.+.++|..   .+....                      -.+|+++.++.+++|++-.+ -
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s----------------------kd~DLt~~a~t~~lF~~ekP-t   57 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS----------------------KDADLTNLADTRALFESEKP-T   57 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc----------------------ccccccchHHHHHHHhccCC-c
Confidence            378999999999999999999999862   222111                      24799999999999988754 4


Q ss_pred             EEEecCCCCC-CCCcccCCHHHHHHHHHhhh
Q 030328          114 VLVVNQGVFV-PGELEVQSLDEVRLMIDVNI  143 (179)
Q Consensus       114 ~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~  143 (179)
                      .+|+.|+..+ --.-...+.+.|...+++|-
T Consensus        58 hVIhlAAmVGGlf~N~~ynldF~r~Nl~ind   88 (315)
T KOG1431|consen   58 HVIHLAAMVGGLFHNNTYNLDFIRKNLQIND   88 (315)
T ss_pred             eeeehHhhhcchhhcCCCchHHHhhcceech
Confidence            4566554332 11112235566666666654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.59  E-value=0.00052  Score=53.05  Aligned_cols=72  Identities=21%  Similarity=0.352  Sum_probs=50.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .++++++++|.|+ |++|+++|+.|...|++|++++|++++.+...+     .+..  .  .   ..+++.+.+   ...
T Consensus       147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~-----~g~~--~--~---~~~~l~~~l---~~a  210 (287)
T TIGR02853       147 FTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITE-----MGLI--P--F---PLNKLEEKV---AEI  210 (287)
T ss_pred             CCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----CCCe--e--e---cHHHHHHHh---ccC
Confidence            3678999999999 779999999999999999999998765433211     1211  1  1   123344444   368


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |++||+..
T Consensus       211 DiVint~P  218 (287)
T TIGR02853       211 DIVINTIP  218 (287)
T ss_pred             CEEEECCC
Confidence            99999763

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.59  E-value=0.00081  Score=52.57  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=36.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|+|++|++|...++.+...|++|+.+++++++.+..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~  179 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL  179 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            588999999999999999999999999999999887765443

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.58  E-value=0.00056  Score=49.44  Aligned_cols=76  Identities=26%  Similarity=0.376  Sum_probs=44.9

Q ss_pred             CCcEEEEEc----------------CCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH
Q 030328           36 KDRHVFITG----------------GSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF   99 (179)
Q Consensus        36 ~~k~vlItG----------------a~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   99 (179)
                      +||++|||+                +||.+|.++|+++..+|++|+++..... .+.         ...+..  .++.+.
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~---------p~~~~~--i~v~sa   69 (185)
T PF04127_consen    2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP---------PPGVKV--IRVESA   69 (185)
T ss_dssp             TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS--------------TTEEE--EE-SSH
T ss_pred             CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc---------cccceE--EEecch
Confidence            566777765                4788999999999999999999888742 110         123333  345555


Q ss_pred             HHHHHHH-HhhCCCcEEEecCCCCC
Q 030328          100 DAVKTAL-DEAGPVDVLVVNQGVFV  123 (179)
Q Consensus       100 ~~v~~~~-~~~~~id~li~~ag~~~  123 (179)
                      ++..+.+ +.....|++|++|++..
T Consensus        70 ~em~~~~~~~~~~~Di~I~aAAVsD   94 (185)
T PF04127_consen   70 EEMLEAVKELLPSADIIIMAAAVSD   94 (185)
T ss_dssp             HHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred             hhhhhhhccccCcceeEEEecchhh
Confidence            6655443 33445699999998765

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.55  E-value=0.00097  Score=52.44  Aligned_cols=43  Identities=30%  Similarity=0.371  Sum_probs=37.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      .|.+++|+||+|++|..+++.+...|++|+.+++++++.+...
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~  193 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLK  193 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999998877655443

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.54  E-value=0.00032  Score=51.36  Aligned_cols=48  Identities=21%  Similarity=0.323  Sum_probs=41.4

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      ..++++|+++|+|.+ .+|+.+|+.|.+.|++|++.|+++++.++..++
T Consensus        23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            345799999999994 899999999999999999999998877665554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.52  E-value=0.0011  Score=51.63  Aligned_cols=75  Identities=29%  Similarity=0.417  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.+++|+|+++++|+++++.+...|++|+++.+++++.+.. ++    .+.. ..  .|..+   +.+.+++..++|++
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~----~~~~-~~--~~~~~---~~~~~~~~~~~d~v  230 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL-KE----LGAD-YV--IDGSK---FSEDVKKLGGADVV  230 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HH----cCCc-EE--EecHH---HHHHHHhccCCCEE
Confidence            578999999999999999999999999999999887655443 21    1221 11  12211   33333444468999


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      ++++|.
T Consensus       231 ~~~~g~  236 (332)
T cd08259         231 IELVGS  236 (332)
T ss_pred             EECCCh
Confidence            988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.52  E-value=0.0012  Score=52.35  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|++|++|...++.+...|++|+.+++++++.+..
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~  199 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL  199 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            588999999999999999999999999999998887765543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.51  E-value=0.0013  Score=51.80  Aligned_cols=41  Identities=37%  Similarity=0.474  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|+|++ |+|....+.....|++|+++++++++.+..
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a  206 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELA  206 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHH
Confidence            59999999997 999998888888999999999999876533

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.51  E-value=0.0011  Score=52.15  Aligned_cols=99  Identities=18%  Similarity=0.121  Sum_probs=59.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHH-HH-------H
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-------RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD-AV-------K  103 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~v-------~  103 (179)
                      ++.|+||+|.+|.+++..|+.+|.       .++++|++++...             ......|+.+.. ..       .
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~-------------a~g~~~Dl~d~~~~~~~~~~~~~   67 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV-------------LEGVVMELMDCAFPLLDGVVPTH   67 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc-------------cceeEeehhcccchhcCceeccC
Confidence            478999999999999999998653       5899998654210             111223333322 00       0


Q ss_pred             HHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhc
Q 030328          104 TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKR  160 (179)
Q Consensus       104 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~  160 (179)
                      ...+.....|++|+.||....+      .+++.+.++.|+.-    .+...+.+.+.
T Consensus        68 ~~~~~~~~aDiVVitAG~~~~~------~~tr~~ll~~N~~i----~k~i~~~i~~~  114 (324)
T TIGR01758        68 DPAVAFTDVDVAILVGAFPRKE------GMERRDLLSKNVKI----FKEQGRALDKL  114 (324)
T ss_pred             ChHHHhCCCCEEEEcCCCCCCC------CCcHHHHHHHHHHH----HHHHHHHHHhh
Confidence            1123445799999999975431      12245567777644    44455555554

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.00044  Score=53.72  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=62.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      -...+|-||+|..|.-+|++|++.|.+-.+..|+..+++...+++.    .+...++++  +++.+++..+   ..++|+
T Consensus         6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG----~~~~~~p~~--~p~~~~~~~~---~~~VVl   76 (382)
T COG3268           6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLG----PEAAVFPLG--VPAALEAMAS---RTQVVL   76 (382)
T ss_pred             ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcC----ccccccCCC--CHHHHHHHHh---cceEEE
Confidence            3468899999999999999999999999999999999888877663    333334443  3777777666   689999


Q ss_pred             ecCCCCC
Q 030328          117 VNQGVFV  123 (179)
Q Consensus       117 ~~ag~~~  123 (179)
                      |++|+..
T Consensus        77 ncvGPyt   83 (382)
T COG3268          77 NCVGPYT   83 (382)
T ss_pred             ecccccc
Confidence            9999754

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.50  E-value=0.0051  Score=48.24  Aligned_cols=77  Identities=19%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcC--ceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATG--IEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .++++.|+|+ |.+|.++|..++.+|.  ++.++|++++.++....++.....  ..+.. ..  .+.       +....
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i-~~--~~~-------~~~~~   73 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI-YA--GDY-------SDCKD   73 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE-Ee--CCH-------HHhCC
Confidence            5679999998 9999999999999886  699999998877666666643211  12222 11  221       22347


Q ss_pred             CcEEEecCCCCC
Q 030328          112 VDVLVVNQGVFV  123 (179)
Q Consensus       112 id~li~~ag~~~  123 (179)
                      .|++|..||...
T Consensus        74 adivIitag~~~   85 (315)
T PRK00066         74 ADLVVITAGAPQ   85 (315)
T ss_pred             CCEEEEecCCCC
Confidence            899999999754

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=97.48  E-value=0.00093  Score=51.37  Aligned_cols=78  Identities=33%  Similarity=0.429  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id  113 (179)
                      .+++++|+|+++++|.++++.+...|+++++++++++..+.. +++    +.+   ...|..+.+..+++.+.  .+++|
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~~d  210 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL----GAD---VAINYRTEDFAEEVKEATGGRGVD  210 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc----CCC---EEEeCCchhHHHHHHHHhCCCCeE
Confidence            578999999999999999999999999999999987665543 222    222   12333333333333222  13688


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      .+++++|.
T Consensus       211 ~vi~~~g~  218 (323)
T cd05276         211 VILDMVGG  218 (323)
T ss_pred             EEEECCch
Confidence            88888763

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.48  E-value=0.0014  Score=50.91  Aligned_cols=77  Identities=35%  Similarity=0.451  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+|+++++|.++++.+...|++++++++++++.+.. .+.    +..   ...|..+.+..+.+.+..  +++|
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~d  237 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KEL----GAD---YVIDYRKEDFVREVRELTGKRGVD  237 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc----CCC---eEEecCChHHHHHHHHHhCCCCCc
Confidence            578999999999999999999999999999999987765433 211    222   123555554444444332  3689


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      ++++++|
T Consensus       238 ~~i~~~g  244 (342)
T cd08266         238 VVVEHVG  244 (342)
T ss_pred             EEEECCc
Confidence            9999887

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK05086 malate dehydrogenase; Provisional

Probab=97.47  E-value=0.00078  Score=52.71  Aligned_cols=101  Identities=18%  Similarity=0.153  Sum_probs=55.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH-c--CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           38 RHVFITGGSSGIGLALAHQAAK-E--GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~-~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++++|.||+|++|.+++..+.. .  +..+.+.++++. .+...-++. ...... .+..  .+.+++.+.   ....|+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~-~~~~~~-~i~~--~~~~d~~~~---l~~~Di   72 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLS-HIPTAV-KIKG--FSGEDPTPA---LEGADV   72 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccceehhhh-cCCCCc-eEEE--eCCCCHHHH---cCCCCE
Confidence            4789999999999999998865 2  346788888743 211111111 101111 1222  111222222   236999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                      +|.++|..+.+.   .++   ...+..|+...-.+.+.
T Consensus        73 VIitaG~~~~~~---~~R---~dll~~N~~i~~~ii~~  104 (312)
T PRK05086         73 VLISAGVARKPG---MDR---SDLFNVNAGIVKNLVEK  104 (312)
T ss_pred             EEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHH
Confidence            999999865432   222   23466676555554444

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.44  E-value=0.0012  Score=51.36  Aligned_cols=42  Identities=21%  Similarity=0.291  Sum_probs=36.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.||+|++|.++++.+...|++|+.+++++++.+..
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l  184 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL  184 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            588999999999999999999999999999999887765443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.44  E-value=0.0021  Score=50.86  Aligned_cols=37  Identities=30%  Similarity=0.586  Sum_probs=33.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG   71 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~   71 (179)
                      .+.+++|+|.|+ ||+|..++..|+..|. ++.++|.+.
T Consensus        21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            578899999999 8999999999999998 799999863

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.43  E-value=0.0012  Score=47.43  Aligned_cols=47  Identities=28%  Similarity=0.212  Sum_probs=38.7

Q ss_pred             CCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           28 PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        28 ~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .......+.++++.|.|. |.||+++|+.+...|++|+..+|+....+
T Consensus        27 ~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   27 ERFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             TTTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             cCCCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh
Confidence            344445689999999998 99999999999999999999999887544

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd00704 MDH Malate dehydrogenase

Probab=97.42  E-value=0.0018  Score=50.91  Aligned_cols=108  Identities=18%  Similarity=0.206  Sum_probs=63.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC-C------eEEEEecCh--hHHHHHHHHHHhhcCceEEEEEeeCCCHH-------HH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG-A------RVSILARSG--EKLEEAKQSIQLATGIEVATYSADVRDFD-------AV  102 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g-~------~v~~~~r~~--~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------~v  102 (179)
                      ++.|+||+|.+|..++..|+.+| +      .+.++|+++  +.++.               ...|+.+..       .+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g---------------~~~Dl~d~~~~~~~~~~i   66 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEG---------------VVMELQDCAFPLLKGVVI   66 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccce---------------eeeehhhhcccccCCcEE
Confidence            58999999999999999999765 2      489999976  32221               122333221       00


Q ss_pred             -HHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          103 -KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       103 -~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                       ....+.....|++|+.||....+   ..+..+   .++.|+.    +.+...+.+.+... ....++++|
T Consensus        67 ~~~~~~~~~~aDiVVitAG~~~~~---g~tR~d---ll~~N~~----i~~~i~~~i~~~~~-~~~iiivvs  126 (323)
T cd00704          67 TTDPEEAFKDVDVAILVGAFPRKP---GMERAD---LLRKNAK----IFKEQGEALNKVAK-PTVKVLVVG  126 (323)
T ss_pred             ecChHHHhCCCCEEEEeCCCCCCc---CCcHHH---HHHHhHH----HHHHHHHHHHHhCC-CCeEEEEeC
Confidence             11223345799999999975432   123333   4555553    44555566655421 123555553

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14968 putative methyltransferase; Provisional

Probab=97.40  E-value=0.0053  Score=43.93  Aligned_cols=78  Identities=27%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCce--EEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE--VATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~--v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++++-.|++.|.   ++..+++++.+++.++.+++..+...+.+....-..  +.+..+|..+.     +.+  ..+|
T Consensus        23 ~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~--~~~d   92 (188)
T PRK14968         23 KGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-----FRG--DKFD   92 (188)
T ss_pred             CCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-----ccc--cCce
Confidence            57789999988776   566666668999999999887766655554322111  66777776432     112  2689


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      .++.|.....
T Consensus        93 ~vi~n~p~~~  102 (188)
T PRK14968         93 VILFNPPYLP  102 (188)
T ss_pred             EEEECCCcCC
Confidence            9998876544

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.40  E-value=0.0042  Score=42.40  Aligned_cols=79  Identities=23%  Similarity=0.430  Sum_probs=56.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh-------------------hHHHHHHHHHHh-hcCceEEEEEee
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG-------------------EKLEEAKQSIQL-ATGIEVATYSAD   95 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~-------------------~~~~~~~~~~~~-~~~~~v~~~~~D   95 (179)
                      +++++|.|+ |++|..+++.|+..|.. +.++|.+.                   .+.+...+.+.. .+..++..+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            678999999 89999999999999985 88887752                   134444555543 346778888888


Q ss_pred             CCCHHHHHHHHHhhCCCcEEEecCC
Q 030328           96 VRDFDAVKTALDEAGPVDVLVVNQG  120 (179)
Q Consensus        96 ~~~~~~v~~~~~~~~~id~li~~ag  120 (179)
                      + +.+..+++++   ..|++|.+..
T Consensus        81 ~-~~~~~~~~~~---~~d~vi~~~d  101 (135)
T PF00899_consen   81 I-DEENIEELLK---DYDIVIDCVD  101 (135)
T ss_dssp             C-SHHHHHHHHH---TSSEEEEESS
T ss_pred             c-cccccccccc---CCCEEEEecC
Confidence            7 3455666665   5798888764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.39  E-value=0.0069  Score=41.78  Aligned_cols=112  Identities=21%  Similarity=0.253  Sum_probs=67.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhh--c-CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLA--T-GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~--~-~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++.|+||+|.+|.++|..|..++  .+++++|++++.++....++...  . ........   .+.       +.....|
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~-------~~~~~aD   71 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDY-------EALKDAD   71 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSG-------GGGTTES
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccc-------ccccccc
Confidence            68899999999999999999887  45999999988776666655421  1 12222222   222       2344789


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ++|..+|....+   ..+..+   .++.|+.-.    +...+.+.+...  ...++.+|
T Consensus        72 ivvitag~~~~~---g~sR~~---ll~~N~~i~----~~~~~~i~~~~p--~~~vivvt  118 (141)
T PF00056_consen   72 IVVITAGVPRKP---GMSRLD---LLEANAKIV----KEIAKKIAKYAP--DAIVIVVT  118 (141)
T ss_dssp             EEEETTSTSSST---TSSHHH---HHHHHHHHH----HHHHHHHHHHST--TSEEEE-S
T ss_pred             EEEEeccccccc---cccHHH---HHHHhHhHH----HHHHHHHHHhCC--ccEEEEeC
Confidence            999999975421   123333   356565443    444444444432  23555543

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=97.38  E-value=0.0016  Score=50.10  Aligned_cols=78  Identities=28%  Similarity=0.323  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id  113 (179)
                      .+++++|+|+++++|.++++.+...|++|+++++++++.+... ++    +.+.   ..|..+.+..+++.+.  .+.+|
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~----g~~~---~~~~~~~~~~~~~~~~~~~~~~d  215 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QA----GADA---VFNYRAEDLADRILAATAGQGVD  215 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc----CCCE---EEeCCCcCHHHHHHHHcCCCceE
Confidence            5899999999999999999999999999999999876554432 11    2221   2344443333333322  23689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      .+++++|.
T Consensus       216 ~vi~~~~~  223 (325)
T cd08253         216 VIIEVLAN  223 (325)
T ss_pred             EEEECCch
Confidence            99988653

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.34  E-value=0.00076  Score=51.23  Aligned_cols=75  Identities=17%  Similarity=0.206  Sum_probs=54.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      ++++|+||++- |+.++++|.++|++|++..+++...+...+     .+  ...+..+.-+.+++.+++++. ++|++|+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~-----~g--~~~v~~g~l~~~~l~~~l~~~-~i~~VID   71 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI-----HQ--ALTVHTGALDPQELREFLKRH-SIDILVD   71 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc-----cC--CceEEECCCCHHHHHHHHHhc-CCCEEEE
Confidence            46999999988 999999999999999998888764332211     11  122445666777787777665 5899998


Q ss_pred             cCCC
Q 030328          118 NQGV  121 (179)
Q Consensus       118 ~ag~  121 (179)
                      .+.+
T Consensus        72 AtHP   75 (256)
T TIGR00715        72 ATHP   75 (256)
T ss_pred             cCCH
Confidence            8764

This enzyme was found to be a monomer by gel filtration.

>PRK06849 hypothetical protein; Provisional

Probab=97.34  E-value=0.0029  Score=51.00  Aligned_cols=79  Identities=19%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH----HHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF----DAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~----~~v~~~~~~~~~  111 (179)
                      +.|+|||||++..+|.++++.|.+.|++|++++.++..........     .....++..-.+.    +.+.++.++. +
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~-----d~~~~~p~p~~d~~~~~~~L~~i~~~~-~   76 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAV-----DGFYTIPSPRWDPDAYIQALLSIVQRE-N   76 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh-----hheEEeCCCCCCHHHHHHHHHHHHHHc-C
Confidence            4689999999999999999999999999999999865443222211     1111222122333    2233444444 5


Q ss_pred             CcEEEecCC
Q 030328          112 VDVLVVNQG  120 (179)
Q Consensus       112 id~li~~ag  120 (179)
                      +|++|-...
T Consensus        77 id~vIP~~e   85 (389)
T PRK06849         77 IDLLIPTCE   85 (389)
T ss_pred             CCEEEECCh
Confidence            898887664

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.33  E-value=0.0011  Score=51.18  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=36.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL   74 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~   74 (179)
                      ..+++||+++|.|+++-.|+.++..|.++|++|.++.|+.+.+
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L  196 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNL  196 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhH
Confidence            3467999999999987799999999999999999888854433

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.32  E-value=0.002  Score=50.09  Aligned_cols=41  Identities=32%  Similarity=0.444  Sum_probs=36.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL   74 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~   74 (179)
                      .++++++++|.|+ |++|+.+++.|...|++|.+++|+++..
T Consensus       148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~  188 (296)
T PRK08306        148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHL  188 (296)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            4568999999998 7799999999999999999999997653

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.32  E-value=0.0022  Score=48.22  Aligned_cols=77  Identities=32%  Similarity=0.451  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH-HHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA-LDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~-~~~~~~id~  114 (179)
                      .+++++|+|+++ +|+++++.+...|.+|+++++++++.+.. ++.    +....   .|..+.+...++ ....+++|+
T Consensus       134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~----g~~~~---~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-KEL----GADHV---IDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHh----CCcee---ccCCcCCHHHHHHHhcCCCCCE
Confidence            678999999988 99999999999999999999987655433 221    22211   232222222222 222357999


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      ++++++.
T Consensus       205 vi~~~~~  211 (271)
T cd05188         205 VIDAVGG  211 (271)
T ss_pred             EEECCCC
Confidence            9999873

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.31  E-value=0.003  Score=50.75  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~   70 (179)
                      .+++++++|.|+ ||+|..+++.|+..|. ++.++|++
T Consensus       132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467889999988 8999999999999997 48899887

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=97.25  E-value=0.0028  Score=49.39  Aligned_cols=42  Identities=26%  Similarity=0.283  Sum_probs=36.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|+++++|.++++.+...|++|+.+++++++.+..
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~  186 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWL  186 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999887665443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.24  E-value=0.0054  Score=45.32  Aligned_cols=81  Identities=20%  Similarity=0.335  Sum_probs=54.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh------------------hHHHHHHHHHHh-hcCceEEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG------------------EKLEEAKQSIQL-ATGIEVATYS   93 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~------------------~~~~~~~~~~~~-~~~~~v~~~~   93 (179)
                      .+++++++|.|+ ||+|..+++.|+..|.. +.++|.+.                  .+.+...+.+.. .+..++..+.
T Consensus        25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~  103 (212)
T PRK08644         25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN  103 (212)
T ss_pred             HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            478899999998 89999999999999976 88888872                  123333333432 2345666666


Q ss_pred             eeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           94 ADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        94 ~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ..+++ +.+++.++   ..|++|.+.
T Consensus       104 ~~i~~-~~~~~~~~---~~DvVI~a~  125 (212)
T PRK08644        104 EKIDE-DNIEELFK---DCDIVVEAF  125 (212)
T ss_pred             eecCH-HHHHHHHc---CCCEEEECC
Confidence            66654 33444443   577777664

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.24  E-value=0.0027  Score=50.16  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... ++    |.+..   .|..+. ++.+..+..+.+|+
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~l----Ga~~v---i~~~~~-~~~~~~~~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EM----GADKL---VNPQND-DLDHYKAEKGYFDV  238 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-Hc----CCcEE---ecCCcc-cHHHHhccCCCCCE
Confidence            5889999997 8999999998889998 5888999887665332 22    33321   232221 23333333345788


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      ++.++|.
T Consensus       239 vid~~G~  245 (343)
T PRK09880        239 SFEVSGH  245 (343)
T ss_pred             EEECCCC
Confidence            8888773

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.23  E-value=0.0028  Score=51.74  Aligned_cols=45  Identities=22%  Similarity=0.487  Sum_probs=38.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQS   80 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~   80 (179)
                      +.+++++|.|+ |.+|..+++.|...|+ +|++++|++++.+...++
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~  225 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEE  225 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence            67899999998 9999999999999997 689999998776655544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.22  E-value=0.0055  Score=45.76  Aligned_cols=81  Identities=17%  Similarity=0.348  Sum_probs=51.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh-------------------hHHHHHHHHHHhh-cCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG-------------------EKLEEAKQSIQLA-TGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~-------------------~~~~~~~~~~~~~-~~~~v~~~   92 (179)
                      .+.+++++|.|+ ||+|.++|+.|+..|.. +.++|.+.                   .+.+...+.+... +..++..+
T Consensus        18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            578899999998 89999999999999975 77776542                   1334444444432 23456666


Q ss_pred             EeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           93 SADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        93 ~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ..+++ .++++++++   ..|++|.+.
T Consensus        97 ~~~i~-~~~~~~~~~---~~DvVi~~~  119 (228)
T cd00757          97 NERLD-AENAEELIA---GYDLVLDCT  119 (228)
T ss_pred             cceeC-HHHHHHHHh---CCCEEEEcC
Confidence            65553 333444443   345554443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.22  E-value=0.003  Score=51.43  Aligned_cols=45  Identities=20%  Similarity=0.446  Sum_probs=38.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~   80 (179)
                      +.+++++|.|+ |.+|..+++.|...| .+|++++|+.++.++..++
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~  223 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE  223 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            67899999998 999999999999999 6799999998776555443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.21  E-value=0.0012  Score=46.93  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .++++|+++|.|++.-+|..+++.|.++|++|.++.|+.++..
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~   82 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK   82 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH
Confidence            4589999999999666799999999999999999999865444

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.21  E-value=0.0028  Score=51.93  Aligned_cols=71  Identities=23%  Similarity=0.401  Sum_probs=49.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++|.|+ |.+|.++++.|.++|..+++++++++..++..+.      ..+..+..|.++.+.+++.  ...+.|.+|..
T Consensus         2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~------~~~~~~~gd~~~~~~l~~~--~~~~a~~vi~~   72 (453)
T PRK09496          2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR------LDVRTVVGNGSSPDVLREA--GAEDADLLIAV   72 (453)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cCEEEEEeCCCCHHHHHHc--CCCcCCEEEEe
Confidence            6888998 9999999999999999999999998876654321      2245566777766555443  01245555544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.19  E-value=0.0065  Score=50.58  Aligned_cols=42  Identities=26%  Similarity=0.299  Sum_probs=37.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ..+.+++|.|+ |.+|...++.+...|++|+++|+++++.+..
T Consensus       163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a  204 (509)
T PRK09424        163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV  204 (509)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45889999999 9999999999999999999999998876644

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.19  E-value=0.0069  Score=44.36  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=33.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS   70 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~   70 (179)
                      ..+..++++|.|+ ||+|..+|..|+..|. +++++|.+
T Consensus        17 ~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        17 QKLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3578899999999 8999999999999998 59999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK04148 hypothetical protein; Provisional

Probab=97.15  E-value=0.0016  Score=44.41  Aligned_cols=56  Identities=16%  Similarity=0.272  Sum_probs=43.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      +++++++.|.+  .|.++|..|.+.|++|+++|.+++..+...+.       .+..+..|+.+++
T Consensus        16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~   71 (134)
T PRK04148         16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPN   71 (134)
T ss_pred             cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCC
Confidence            45789999997  77889999999999999999999866544332       2456777877644

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=97.14  E-value=0.0076  Score=46.43  Aligned_cols=79  Identities=25%  Similarity=0.323  Sum_probs=57.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      ++++++|+||+|..|+-.-|.-.-.|++|+....+.++..-...++    |.+..   .|..++.++.+.+++.  ..+|
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~----G~d~a---fNYK~e~~~~~aL~r~~P~GID  225 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKF----GFDDA---FNYKEESDLSAALKRCFPEGID  225 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhcc----CCccc---eeccCccCHHHHHHHhCCCcce
Confidence            6799999999999999887777778999999999888766544433    33322   3444554566666654  3699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      +.+-|.|.
T Consensus       226 iYfeNVGG  233 (343)
T KOG1196|consen  226 IYFENVGG  233 (343)
T ss_pred             EEEeccCc
Confidence            99999983

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=97.13  E-value=0.0037  Score=48.20  Aligned_cols=77  Identities=34%  Similarity=0.447  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+|+++++|.++++.+...|++|+++.+++++.+.. .+.    +.+.   ..+..+.+..+++.+..  +++|
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~----g~~~---~~~~~~~~~~~~~~~~~~~~~~d  210 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL----GADI---AINYREEDFVEVVKAETGGKGVD  210 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc----CCcE---EEecCchhHHHHHHHHcCCCCeE
Confidence            578999999999999999999999999999999887665432 222    2221   12222233223333221  3588


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      .+++++|
T Consensus       211 ~~i~~~~  217 (325)
T TIGR02824       211 VILDIVG  217 (325)
T ss_pred             EEEECCc
Confidence            8888765

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.10  E-value=0.0046  Score=49.94  Aligned_cols=47  Identities=28%  Similarity=0.534  Sum_probs=41.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQ   82 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~   82 (179)
                      +++++++|.|| |-+|.-.|++|.++| .+|+++-|+.++.++..+++.
T Consensus       176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~  223 (414)
T COG0373         176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG  223 (414)
T ss_pred             cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC
Confidence            78999999999 889999999999999 558889999988887777653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.10  E-value=0.0089  Score=42.78  Aligned_cols=76  Identities=17%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh------------------hHHHHHHHHHHh-hcCceEEEEEeeCCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGAR-VSILARSG------------------EKLEEAKQSIQL-ATGIEVATYSADVRD   98 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~------------------~~~~~~~~~~~~-~~~~~v~~~~~D~~~   98 (179)
                      +++|.|+ ||+|..+++.|+..|.. +.++|.+.                  .+.+...+.+.. .+..++..+...++.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            3788887 89999999999999985 89998875                  122333333332 234556666555544


Q ss_pred             HHHHHHHHHhhCCCcEEEecC
Q 030328           99 FDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        99 ~~~v~~~~~~~~~id~li~~a  119 (179)
                       +.++++++   ..|++|.+.
T Consensus        80 -~~~~~~l~---~~DlVi~~~   96 (174)
T cd01487          80 -NNLEGLFG---DCDIVVEAF   96 (174)
T ss_pred             -hhHHHHhc---CCCEEEECC
Confidence             34445554   578887774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN00203 glutamyl-tRNA reductase

Probab=97.07  E-value=0.0054  Score=51.25  Aligned_cols=46  Identities=17%  Similarity=0.419  Sum_probs=40.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~   81 (179)
                      +.+++++|.|+ |.+|..+++.|...|+ +|+++.|+.++.+...+++
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~  310 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF  310 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence            67899999999 9999999999999997 5999999988877665544

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.06  E-value=0.01  Score=47.31  Aligned_cols=81  Identities=19%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh-------------------hHHHHHHHHHHh-hcCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG-------------------EKLEEAKQSIQL-ATGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~-------------------~~~~~~~~~~~~-~~~~~v~~~   92 (179)
                      .+++++++|.|+ ||+|..+++.|+..|.. +.++|.+.                   .+.+...+.+.. .+..++..+
T Consensus        25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            478899999999 89999999999999965 78888764                   234444444443 235556666


Q ss_pred             EeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           93 SADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        93 ~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ...++. ++..++++   ..|++|.+.
T Consensus       104 ~~~i~~-~~~~~~~~---~~DvVvd~~  126 (355)
T PRK05597        104 VRRLTW-SNALDELR---DADVILDGS  126 (355)
T ss_pred             EeecCH-HHHHHHHh---CCCEEEECC
Confidence            656653 23333333   345554443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.05  E-value=0.0046  Score=40.83  Aligned_cols=71  Identities=28%  Similarity=0.419  Sum_probs=51.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ++|.|. |.+|..+++.|.+.+.+|++++++++..++..++     +  +..+.+|.++++.+++.  ...+.+.++-..
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~--~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~   70 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----G--VEVIYGDATDPEVLERA--GIEKADAVVILT   70 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----T--SEEEES-TTSHHHHHHT--TGGCESEEEEES
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----c--cccccccchhhhHHhhc--CccccCEEEEcc
Confidence            567788 6899999999999877999999998875544321     2  56788999998877665  223567666655


Q ss_pred             C
Q 030328          120 G  120 (179)
Q Consensus       120 g  120 (179)
                      .
T Consensus        71 ~   71 (116)
T PF02254_consen   71 D   71 (116)
T ss_dssp             S
T ss_pred             C
Confidence            4

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.05  E-value=0.002  Score=53.37  Aligned_cols=72  Identities=24%  Similarity=0.373  Sum_probs=51.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++++++|+|+ ||+|++++..|.+.|+++.+++|+.++.++..++..    ...    .+.   +++.    .....|
T Consensus       329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~----~~~----~~~---~~~~----~l~~~D  392 (477)
T PRK09310        329 PLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ----GKA----FPL---ESLP----ELHRID  392 (477)
T ss_pred             CcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----cce----ech---hHhc----ccCCCC
Confidence            467899999997 799999999999999999999999877665544321    111    111   1111    134689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++||+...
T Consensus       393 iVInatP~  400 (477)
T PRK09310        393 IIINCLPP  400 (477)
T ss_pred             EEEEcCCC
Confidence            99999754

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=97.05  E-value=0.0056  Score=47.61  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=36.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|.|+++++|.++++.....|++|+++++++++.+..
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  187 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL  187 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            467999999999999999999999999999999988765544

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.04  E-value=0.013  Score=44.34  Aligned_cols=37  Identities=22%  Similarity=0.380  Sum_probs=32.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS   70 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~   70 (179)
                      ..+++++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus        28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3578899999999 9999999999999996 47777765

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.04  E-value=0.0092  Score=43.87  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=35.3

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ..++.||+++|.|+ |.+|..-++.|.+.|++|++++.+..
T Consensus         4 ~l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         4 FANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             EEEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            34678999999998 89999999999999999999987654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.04  E-value=0.0055  Score=47.95  Aligned_cols=72  Identities=26%  Similarity=0.456  Sum_probs=50.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +.+++++|.|+ |.+|..+++.|...| .+|++++|++++.++..+++    +..  .     .+.+++.+.+.   ..|
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----g~~--~-----~~~~~~~~~l~---~aD  240 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----GGN--A-----VPLDELLELLN---EAD  240 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----CCe--E-----EeHHHHHHHHh---cCC
Confidence            57899999998 999999999999877 56889999988776655543    221  1     11233333333   568


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|.+.+.
T Consensus       241 vVi~at~~  248 (311)
T cd05213         241 VVISATGA  248 (311)
T ss_pred             EEEECCCC
Confidence            88888774

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.04  E-value=0.0059  Score=47.12  Aligned_cols=42  Identities=36%  Similarity=0.425  Sum_probs=37.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|+|+++++|.++++.+...|++++++++++++.+..
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~  185 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL  185 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            578999999999999999999999999999999887665543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=97.00  E-value=0.013  Score=47.06  Aligned_cols=36  Identities=17%  Similarity=0.485  Sum_probs=32.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~   70 (179)
                      .+++++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus        38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            467889999999 8999999999999996 68888876

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.99  E-value=0.0059  Score=50.30  Aligned_cols=78  Identities=28%  Similarity=0.414  Sum_probs=54.9

Q ss_pred             CcCCcEEEEEcC----------------CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC
Q 030328           34 PIKDRHVFITGG----------------SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR   97 (179)
Q Consensus        34 ~~~~k~vlItGa----------------~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~   97 (179)
                      +++||++|||+|                ||.+|.++|+.+..+|++|+++.....        +.  ....+..+  ++.
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~--------~~--~p~~v~~i--~V~  320 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD--------LA--DPQGVKVI--HVE  320 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC--------CC--CCCCceEE--Eec
Confidence            479999999975                578999999999999999999886432        11  11224443  344


Q ss_pred             CHHHHHHHHHhhCCCcEEEecCCCCC
Q 030328           98 DFDAVKTALDEAGPVDVLVVNQGVFV  123 (179)
Q Consensus        98 ~~~~v~~~~~~~~~id~li~~ag~~~  123 (179)
                      +.++..+.+++.-+.|++|.+|.+..
T Consensus       321 ta~eM~~av~~~~~~Di~I~aAAVaD  346 (475)
T PRK13982        321 SARQMLAAVEAALPADIAIFAAAVAD  346 (475)
T ss_pred             CHHHHHHHHHhhCCCCEEEEeccccc
Confidence            55555555544335799999998754

>PRK08223 hypothetical protein; Validated

Probab=96.99  E-value=0.008  Score=46.36  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=31.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~   70 (179)
                      .+++.+++|.|+ ||+|..++..|+..|.. +.++|.+
T Consensus        24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            478999999999 89999999999999965 7788776

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.99  E-value=0.0065  Score=46.33  Aligned_cols=79  Identities=23%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHcC----CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           40 VFITGGSSGIGLALAHQAAKEG----ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +.|.||+|.+|..++..++..|    .+++++|.+++.++....++.......   ....++..++..+.+   ...|++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~---~~~~i~~~~d~~~~~---~~aDiV   74 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL---ADIKVSITDDPYEAF---KDADVV   74 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc---cCcEEEECCchHHHh---CCCCEE
Confidence            4689998899999999999988    689999999887776666654221111   011111111222333   368999


Q ss_pred             EecCCCCCC
Q 030328          116 VVNQGVFVP  124 (179)
Q Consensus       116 i~~ag~~~~  124 (179)
                      |..+|....
T Consensus        75 v~t~~~~~~   83 (263)
T cd00650          75 IITAGVGRK   83 (263)
T ss_pred             EECCCCCCC
Confidence            999986543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.97  E-value=0.0086  Score=47.04  Aligned_cols=78  Identities=15%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +.+++.|+|| |.+|..++..++..| .+++++|.+++.++....++...   .+.... +.. .++   .+ .+   ..
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~-~~d---~~-~l---~~   73 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILG-TNN---YE-DI---KD   73 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeE-EEe-CCC---HH-Hh---CC
Confidence            5678999997 889999999999988 78999999887544322222110   011111 111 122   22 22   36


Q ss_pred             CcEEEecCCCCC
Q 030328          112 VDVLVVNQGVFV  123 (179)
Q Consensus       112 id~li~~ag~~~  123 (179)
                      .|++|.++|...
T Consensus        74 ADiVVitag~~~   85 (319)
T PTZ00117         74 SDVVVITAGVQR   85 (319)
T ss_pred             CCEEEECCCCCC
Confidence            799999998654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.94  E-value=0.014  Score=43.94  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG   71 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~   71 (179)
                      .+++++++|.|+ ||+|..+++.|+..|.. ++++|.+.
T Consensus        21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            467889999999 89999999999999965 77777753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=96.94  E-value=0.0084  Score=46.47  Aligned_cols=77  Identities=25%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+.+++|+|+++++|.++++.+...|++|+.+++++++.+.. +++    +.+.   ..|..+.+..+++.+..  .++|
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~----g~~~---~~~~~~~~~~~~~~~~~~~~~~d  213 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL----GADV---AVDYTRPDWPDQVREALGGGGVT  213 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc----CCCE---EEecCCccHHHHHHHHcCCCCce
Confidence            478999999999999999999999999999999887765443 222    3221   12333333333333222  2588


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      .++++.|
T Consensus       214 ~vl~~~g  220 (324)
T cd08244         214 VVLDGVG  220 (324)
T ss_pred             EEEECCC
Confidence            8888765

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.94  E-value=0.0078  Score=47.24  Aligned_cols=40  Identities=30%  Similarity=0.324  Sum_probs=34.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~   76 (179)
                      .+.+++|+|+ |++|...++.+...|++ |+++++++++.+.
T Consensus       163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~  203 (339)
T cd08239         163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLEL  203 (339)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            4889999986 89999999999999999 9999988776543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=96.91  E-value=0.01  Score=46.38  Aligned_cols=115  Identities=23%  Similarity=0.234  Sum_probs=63.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCe--EEEEecCh--hHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGAR--VSILARSG--EKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~--v~~~~r~~--~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      +++.|+|++|.+|..++..++..|..  |+++|+++  +.++....++...   .+....   ...++  +.+    ...
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~---i~~~~--d~~----~l~   71 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAE---IKISS--DLS----DVA   71 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcE---EEECC--CHH----HhC
Confidence            46899999999999999999999864  99999954  3333333222210   111111   11111  112    234


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSS  173 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss  173 (179)
                      ..|++|.++|....+   ..+..   +.++.|+.-.    +.+.+.+.+..  ..+.++++++
T Consensus        72 ~aDiViitag~p~~~---~~~r~---dl~~~n~~i~----~~~~~~i~~~~--~~~~viv~~n  122 (309)
T cd05294          72 GSDIVIITAGVPRKE---GMSRL---DLAKKNAKIV----KKYAKQIAEFA--PDTKILVVTN  122 (309)
T ss_pred             CCCEEEEecCCCCCC---CCCHH---HHHHHHHHHH----HHHHHHHHHHC--CCeEEEEeCC
Confidence            789999999964321   22322   2345454433    44444444432  2346666665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=96.90  E-value=0.0079  Score=46.67  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|+++.+|.++++.....|++++++.++.+..+..
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~  180 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL  180 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            578999999999999999999999999999998887654443

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=96.89  E-value=0.0013  Score=40.01  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=23.4

Q ss_pred             CC-cEEEEEcCCCchHHH--HHHHHHHcCCeEEEEecC
Q 030328           36 KD-RHVFITGGSSGIGLA--LAHQAAKEGARVSILARS   70 (179)
Q Consensus        36 ~~-k~vlItGa~~~iG~~--la~~l~~~g~~v~~~~r~   70 (179)
                      .+ |++||+|+|+|.|++  ++..+ ..|++.+.++..
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~fE   73 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVSFE   73 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE--
T ss_pred             CCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEeec
Confidence            44 899999999999999  55555 677887777654

>PRK08328 hypothetical protein; Provisional

Probab=96.86  E-value=0.022  Score=42.69  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARS   70 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~   70 (179)
                      ..+++++++|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus        23 ~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3478899999999 89999999999999965 7788765

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=96.86  E-value=0.01  Score=46.20  Aligned_cols=42  Identities=26%  Similarity=0.249  Sum_probs=36.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|+++.+|.++++.....|++|+++++++++.+..
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~  180 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL  180 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH
Confidence            578999999999999999999999999999999887655433

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.86  E-value=0.0045  Score=44.52  Aligned_cols=43  Identities=33%  Similarity=0.500  Sum_probs=35.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ   82 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~   82 (179)
                      ++.|.|| |.+|..+|..++..|++|.+.|++++.+++..+.+.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~   43 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE   43 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence            4778898 999999999999999999999999987766555543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=96.83  E-value=0.014  Score=44.92  Aligned_cols=40  Identities=35%  Similarity=0.483  Sum_probs=35.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+.+++|.|+++++|.++++.....|++|+.+.+++++.+
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  181 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAA  181 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            5789999999999999999999999999999988876544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.82  E-value=0.028  Score=38.61  Aligned_cols=77  Identities=18%  Similarity=0.335  Sum_probs=49.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh-------------------hHHHHHHHHHHhh-cCceEEEEEeeCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-RVSILARSG-------------------EKLEEAKQSIQLA-TGIEVATYSADVR   97 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~-~~~~v~~~~~D~~   97 (179)
                      +++|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+...+.+... +..++..+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            4788998 8999999999999998 588887652                   1233333344332 2456666666655


Q ss_pred             CHHHHHHHHHhhCCCcEEEecCC
Q 030328           98 DFDAVKTALDEAGPVDVLVVNQG  120 (179)
Q Consensus        98 ~~~~v~~~~~~~~~id~li~~ag  120 (179)
                      +... .+.   ..+.|++|.+..
T Consensus        80 ~~~~-~~~---~~~~diVi~~~d   98 (143)
T cd01483          80 EDNL-DDF---LDGVDLVIDAID   98 (143)
T ss_pred             hhhH-HHH---hcCCCEEEECCC
Confidence            4322 222   346888888775

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.82  E-value=0.012  Score=45.88  Aligned_cols=74  Identities=30%  Similarity=0.408  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC-CHHHHHHHHHhh-CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR-DFDAVKTALDEA-GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~v~~~~~~~-~~id  113 (179)
                      .|+++-|+|++| +|.--.+.-...|++|+++++...+-++..+.+    |.+..   .|.+ |++.++++.+.. +.+|
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L----GAd~f---v~~~~d~d~~~~~~~~~dg~~~  252 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL----GADVF---VDSTEDPDIMKAIMKTTDGGID  252 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc----Cccee---EEecCCHHHHHHHHHhhcCcce
Confidence            799999999977 987766666678999999999986655554443    55543   3555 677777777653 3344


Q ss_pred             EEEe
Q 030328          114 VLVV  117 (179)
Q Consensus       114 ~li~  117 (179)
                      .+.|
T Consensus       253 ~v~~  256 (360)
T KOG0023|consen  253 TVSN  256 (360)
T ss_pred             eeee
Confidence            4443

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=96.82  E-value=0.0059  Score=43.62  Aligned_cols=80  Identities=18%  Similarity=0.169  Sum_probs=56.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      +.+.++.++|.||+|-.|..+.+++.+++  .+|+++.|++...+++        ...+.-...|+++.   ++..+...
T Consensus        14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at--------~k~v~q~~vDf~Kl---~~~a~~~q   82 (238)
T KOG4039|consen   14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT--------DKVVAQVEVDFSKL---SQLATNEQ   82 (238)
T ss_pred             HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc--------cceeeeEEechHHH---HHHHhhhc
Confidence            34678999999999999999999999987  4599999985322211        22233345565544   45555555


Q ss_pred             CCcEEEecCCCCC
Q 030328          111 PVDVLVVNQGVFV  123 (179)
Q Consensus       111 ~id~li~~ag~~~  123 (179)
                      .+|+++.+-|...
T Consensus        83 g~dV~FcaLgTTR   95 (238)
T KOG4039|consen   83 GPDVLFCALGTTR   95 (238)
T ss_pred             CCceEEEeecccc
Confidence            7899999877654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.79  E-value=0.022  Score=48.84  Aligned_cols=60  Identities=17%  Similarity=0.387  Sum_probs=46.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~  104 (179)
                      .++++|.|. |.+|+.+++.|.++|.+++++|+++++.++..+     .+  ...+..|.++++-+++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----~g--~~v~~GDat~~~~L~~  459 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----FG--MKVFYGDATRMDLLES  459 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----cC--CeEEEEeCCCHHHHHh
Confidence            467888888 899999999999999999999999987765533     12  3457788887765543

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.78  E-value=0.027  Score=43.16  Aligned_cols=37  Identities=22%  Similarity=0.410  Sum_probs=32.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARS   70 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~   70 (179)
                      ..+++++++|.|+ ||+|..+|..|+..| -++.++|.+
T Consensus        26 ~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         26 QLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3478899999999 899999999999999 568888876

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.77  E-value=0.055  Score=42.60  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHh---hcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQL---ATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      ++.+++.|.|| |.+|..+|..++.+| .+++++|.+++..+....++..   ..+.......  .+|.   +    ...
T Consensus         4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~---~----~l~   73 (321)
T PTZ00082          4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNY---E----DIA   73 (321)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCH---H----HhC
Confidence            34578999996 889999999999999 4899999988754322111111   0111111111  1222   1    234


Q ss_pred             CCcEEEecCCCCCC
Q 030328          111 PVDVLVVNQGVFVP  124 (179)
Q Consensus       111 ~id~li~~ag~~~~  124 (179)
                      ..|++|+.+|....
T Consensus        74 ~aDiVI~tag~~~~   87 (321)
T PTZ00082         74 GSDVVIVTAGLTKR   87 (321)
T ss_pred             CCCEEEECCCCCCC
Confidence            68999999997553

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.77  E-value=0.0048  Score=42.54  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=38.9

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      ..+++||+++|.|.+.-.|+.++..|.++|++|..++++...+++
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~   67 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS   67 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH
Confidence            446899999999999999999999999999999999876544443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.76  E-value=0.0064  Score=51.37  Aligned_cols=71  Identities=13%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      .+++|.|+ |.+|++++++|.++|.+++++|+++++.++..+       .....+.+|.+|++.+++.  ...+.|.++-
T Consensus       418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-------~g~~~i~GD~~~~~~L~~a--~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-------RGIRAVLGNAANEEIMQLA--HLDCARWLLL  487 (558)
T ss_pred             CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-------CCCeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence            46788888 899999999999999999999999887665432       1355678899987766543  1235665554


Q ss_pred             c
Q 030328          118 N  118 (179)
Q Consensus       118 ~  118 (179)
                      .
T Consensus       488 ~  488 (558)
T PRK10669        488 T  488 (558)
T ss_pred             E
Confidence            3

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.75  E-value=0.0053  Score=47.34  Aligned_cols=43  Identities=19%  Similarity=0.365  Sum_probs=37.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+++||+++|+|+|.-+|+.++..|.++|++|+++.++...++
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~  196 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA  196 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence            3689999999999998999999999999999998888654443

>PLN02740 Alcohol dehydrogenase-like

Probab=96.74  E-value=0.014  Score=46.74  Aligned_cols=41  Identities=32%  Similarity=0.390  Sum_probs=35.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   77 (179)
                      .+++++|.|+ |++|...++.+...|+ +|+++++++++.+..
T Consensus       198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a  239 (381)
T PLN02740        198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKG  239 (381)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH
Confidence            5889999996 9999999999999999 599999988765543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.74  E-value=0.014  Score=46.03  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHH--------HHHHHHhhcCceEEEEEeeCCCHHH--H
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEE--------AKQSIQLATGIEVATYSADVRDFDA--V  102 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~--------~~~~~~~~~~~~v~~~~~D~~~~~~--v  102 (179)
                      .+.||++.|.|. |.||+++|+++...|++|++.|+ ..+..+.        ..+++.  ...++....+.+++...  +
T Consensus       139 el~gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL--~~sDiv~lh~PlT~eT~g~i  215 (324)
T COG0111         139 ELAGKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELL--AEADILTLHLPLTPETRGLI  215 (324)
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHH--hhCCEEEEcCCCCcchhccc
Confidence            578999999999 89999999999999999999999 3332111        112221  24667777788876543  1


Q ss_pred             -HHHHHhhCCCcEEEecC
Q 030328          103 -KTALDEAGPVDVLVVNQ  119 (179)
Q Consensus       103 -~~~~~~~~~id~li~~a  119 (179)
                       .+.+++.++-.++||++
T Consensus       216 ~~~~~a~MK~gailIN~a  233 (324)
T COG0111         216 NAEELAKMKPGAILINAA  233 (324)
T ss_pred             CHHHHhhCCCCeEEEECC
Confidence             23344444334677765

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.74  E-value=0.0057  Score=45.34  Aligned_cols=41  Identities=37%  Similarity=0.475  Sum_probs=35.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      ++.|.|++|.+|.+++..|++.|++|.+.+|++++.+...+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~   42 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAA   42 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHH
Confidence            58899988999999999999999999999999887665544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.73  E-value=0.012  Score=46.90  Aligned_cols=76  Identities=26%  Similarity=0.360  Sum_probs=48.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id  113 (179)
                      .+++++|.|+ |++|...++.+...|+ +|+++++++++.+.. +++    +.+.   ..|..+.+..+++.+.. +++|
T Consensus       191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~----Ga~~---~i~~~~~~~~~~i~~~~~~g~d  261 (371)
T cd08281         191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL----GATA---TVNAGDPNAVEQVRELTGGGVD  261 (371)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc----CCce---EeCCCchhHHHHHHHHhCCCCC
Confidence            5789999986 8999999998889999 599999888765533 222    3321   12333332223332221 2578


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      ++|.+.|
T Consensus       262 ~vid~~G  268 (371)
T cd08281         262 YAFEMAG  268 (371)
T ss_pred             EEEECCC
Confidence            8888776

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=96.71  E-value=0.016  Score=44.53  Aligned_cols=41  Identities=39%  Similarity=0.491  Sum_probs=36.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .+++++|+|+++++|.++++.+...|++|+.++++.++.+.
T Consensus       139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  179 (323)
T cd08241         139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLAL  179 (323)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence            57899999999999999999999999999999988765443

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.70  E-value=0.017  Score=38.85  Aligned_cols=74  Identities=27%  Similarity=0.334  Sum_probs=48.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHH-cCCeEE-EEecCh----------------------hHHHHHHHHHHhhcCceEEEEEe
Q 030328           39 HVFITGGSSGIGLALAHQAAK-EGARVS-ILARSG----------------------EKLEEAKQSIQLATGIEVATYSA   94 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~-~g~~v~-~~~r~~----------------------~~~~~~~~~~~~~~~~~v~~~~~   94 (179)
                      ++.|.|++|.+|+.+++.+.+ .+.++. .+++++                      +..++..+    .  .+   +..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~----~--~D---VvI   72 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE----E--AD---VVI   72 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT----H---S---EEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc----c--CC---EEE
Confidence            689999999999999999998 778854 566766                      11222211    1  23   456


Q ss_pred             eCCCHHHHHHHHHhh--CCCcEEEecCCC
Q 030328           95 DVRDFDAVKTALDEA--GPVDVLVVNQGV  121 (179)
Q Consensus        95 D~~~~~~v~~~~~~~--~~id~li~~ag~  121 (179)
                      |+|.++.+.+.++..  .+..+++-+.|.
T Consensus        73 DfT~p~~~~~~~~~~~~~g~~~ViGTTG~  101 (124)
T PF01113_consen   73 DFTNPDAVYDNLEYALKHGVPLVIGTTGF  101 (124)
T ss_dssp             EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred             EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence            999988877665542  257778777773

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.70  E-value=0.023  Score=44.78  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=56.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHH-------HHHHHhhcCceEEEEEeeCCCHHH--H
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEA-------KQSIQLATGIEVATYSADVRDFDA--V  102 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~-------~~~~~~~~~~~v~~~~~D~~~~~~--v  102 (179)
                      ..++||++.|.|- |.||+++|+++..-|++|+..+|++. ..++.       .+++  ....++..+.+.++....  +
T Consensus       142 ~~l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~el--l~~sDii~l~~Plt~~T~hLi  218 (324)
T COG1052         142 FDLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDEL--LAESDIISLHCPLTPETRHLI  218 (324)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHH--HHhCCEEEEeCCCChHHhhhc
Confidence            4689999999998 99999999999999999999998863 11111       1122  124677778888876443  1


Q ss_pred             -HHHHHhhCCCcEEEecC
Q 030328          103 -KTALDEAGPVDVLVVNQ  119 (179)
Q Consensus       103 -~~~~~~~~~id~li~~a  119 (179)
                       .+.+++.++=-++||.+
T Consensus       219 n~~~l~~mk~ga~lVNta  236 (324)
T COG1052         219 NAEELAKMKPGAILVNTA  236 (324)
T ss_pred             CHHHHHhCCCCeEEEECC
Confidence             23445554434555554

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.69  E-value=0.026  Score=45.01  Aligned_cols=39  Identities=21%  Similarity=0.387  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+++++|.|+ |++|...++.+...|++|++++.+.++..
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~  221 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKED  221 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhh
Confidence            5889999776 89999999999999999988887765443

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.66  E-value=0.014  Score=52.41  Aligned_cols=77  Identities=19%  Similarity=0.208  Sum_probs=59.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-Ce-------------EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-AR-------------VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~-------------v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      +.|+++|.|| |.+|+..++.|++.. +.             |.++|++.+.+++..+...     .+..+..|++|.++
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----~~~~v~lDv~D~e~  641 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----NAEAVQLDVSDSES  641 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC-----CCceEEeecCCHHH
Confidence            4779999998 999999999998753 33             7888998877766554331     34567889999988


Q ss_pred             HHHHHHhhCCCcEEEecCCC
Q 030328          102 VKTALDEAGPVDVLVVNQGV  121 (179)
Q Consensus       102 v~~~~~~~~~id~li~~ag~  121 (179)
                      +.++++   ++|+||++...
T Consensus       642 L~~~v~---~~DaVIsalP~  658 (1042)
T PLN02819        642 LLKYVS---QVDVVISLLPA  658 (1042)
T ss_pred             HHHhhc---CCCEEEECCCc
Confidence            777766   58999998754

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=96.66  E-value=0.014  Score=45.23  Aligned_cols=41  Identities=24%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .+.+++|.|+++++|.++++.+...|++++++.+++++.+.
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~  178 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEE  178 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHH
Confidence            57899999999999999999999999999999888765443

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.65  E-value=0.021  Score=38.25  Aligned_cols=65  Identities=37%  Similarity=0.395  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcEEEecCC
Q 030328           48 GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDVLVVNQG  120 (179)
Q Consensus        48 ~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~li~~ag  120 (179)
                      |+|...++.+...|++|+++++++++.+...     +.|.+.   ..|.++.+-.+++.+..  .++|++|.++|
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~-----~~Ga~~---~~~~~~~~~~~~i~~~~~~~~~d~vid~~g   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK-----ELGADH---VIDYSDDDFVEQIRELTGGRGVDVVIDCVG   67 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-----HTTESE---EEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH-----hhcccc---cccccccccccccccccccccceEEEEecC
Confidence            5899999999999999999999987655432     234332   23444433333333332  36999999998

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.65  E-value=0.041  Score=40.20  Aligned_cols=36  Identities=19%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~   70 (179)
                      .+++.+++|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus        16 ~L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          16 KLRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence            467889999999 56999999999999977 7788765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=96.64  E-value=0.016  Score=44.48  Aligned_cols=41  Identities=32%  Similarity=0.350  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .+++++|.|+++++|.++++.....|++|+++++++++.+.
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  176 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAEL  176 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            57899999999999999999999999999999888766543

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.64  E-value=0.005  Score=47.78  Aligned_cols=44  Identities=14%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      ..+++||++.+.|.++-+|+.+|..|.++|++|.++.++....+
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~  197 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK  197 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH
Confidence            34689999999999999999999999999999999977655433

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.64  E-value=0.099  Score=39.70  Aligned_cols=76  Identities=26%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id  113 (179)
                      .|-++|+--|+||+|..+||++...|++++.+..+.++.+...+     .|.+   +..|.+..|-++++.+-  ...+|
T Consensus       146 pGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ake-----nG~~---h~I~y~~eD~v~~V~kiTngKGVd  217 (336)
T KOG1197|consen  146 PGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKE-----NGAE---HPIDYSTEDYVDEVKKITNGKGVD  217 (336)
T ss_pred             CCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHh-----cCCc---ceeeccchhHHHHHHhccCCCCce
Confidence            57899999999999999999999999999999888766543322     3433   23455555555554331  12445


Q ss_pred             EEEecC
Q 030328          114 VLVVNQ  119 (179)
Q Consensus       114 ~li~~a  119 (179)
                      ++.-..
T Consensus       218 ~vyDsv  223 (336)
T KOG1197|consen  218 AVYDSV  223 (336)
T ss_pred             eeeccc
Confidence            544433

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.63  E-value=0.012  Score=48.19  Aligned_cols=64  Identities=28%  Similarity=0.405  Sum_probs=49.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~  104 (179)
                      ...++++|.|+ |.+|+.+++.|.++|.+|++++++++..++..++.     ..+..+..|.++.+.+++
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~  292 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEE  292 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHh
Confidence            45789999999 99999999999999999999999988666544321     234556777777665543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.62  E-value=0.00084  Score=43.76  Aligned_cols=38  Identities=21%  Similarity=0.442  Sum_probs=32.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .++++++++|.|+ |.+|..-++.|.+.|++|++++.+.
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            3578999999999 9999999999999999999999985

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.62  E-value=0.052  Score=41.60  Aligned_cols=39  Identities=36%  Similarity=0.469  Sum_probs=33.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLE   75 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~   75 (179)
                      .+++++|.|+ |++|...++.+...|++ |+++++++++.+
T Consensus       120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~  159 (280)
T TIGR03366       120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRE  159 (280)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            6889999987 89999999999899997 888888776554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.61  E-value=0.052  Score=45.27  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=36.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ..+.+++|.|+ |.+|...++.+...|++|+++++++++.+..
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a  203 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  203 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45679999998 9999999999999999999999998865533

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.61  E-value=0.038  Score=47.22  Aligned_cols=60  Identities=17%  Similarity=0.330  Sum_probs=46.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~  104 (179)
                      ..+++|.|. |.+|+.+++.|.++|.+++++|++++..++..+     .+  ...+..|.++++-+++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----~g--~~v~~GDat~~~~L~~  459 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----YG--YKVYYGDATQLELLRA  459 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----CC--CeEEEeeCCCHHHHHh
Confidence            357888887 899999999999999999999999887665432     12  3456778887766544

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=96.61  E-value=0.021  Score=44.51  Aligned_cols=76  Identities=20%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~  114 (179)
                      ++.++++|++|++|...++.....|++|+++++++++.+...+     .+.+..   .|..+.+..+++.+..  .++|+
T Consensus       144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~-----~g~~~~---i~~~~~~~~~~v~~~~~~~~~d~  215 (324)
T cd08291         144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK-----IGAEYV---LNSSDPDFLEDLKELIAKLNATI  215 (324)
T ss_pred             CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-----cCCcEE---EECCCccHHHHHHHHhCCCCCcE
Confidence            3445555999999999999888899999999988776544322     233321   2222222222332221  25888


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      ++++.|
T Consensus       216 vid~~g  221 (324)
T cd08291         216 FFDAVG  221 (324)
T ss_pred             EEECCC
Confidence            888765

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.60  E-value=0.023  Score=44.58  Aligned_cols=41  Identities=32%  Similarity=0.379  Sum_probs=36.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .+.+++|.|+++++|.++++.+...|++|+++.+++++.+.
T Consensus       165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~  205 (341)
T cd08297         165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLEL  205 (341)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            57899999999999999999999999999999998766543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.60  E-value=0.024  Score=44.40  Aligned_cols=77  Identities=21%  Similarity=0.347  Sum_probs=48.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChh-------------------HHHHHHHHHHh-hcCceEEEEEeeCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGAR-VSILARSGE-------------------KLEEAKQSIQL-ATGIEVATYSADVR   97 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~-------------------~~~~~~~~~~~-~~~~~v~~~~~D~~   97 (179)
                      +++|.|+ ||+|..+++.|+..|.. +.++|.+.-                   +.+...+.+.. .+..++..+..+++
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            4789998 89999999999999966 778876531                   23333333332 23556666666776


Q ss_pred             CHHHHHHHHHhhCCCcEEEecC
Q 030328           98 DFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        98 ~~~~v~~~~~~~~~id~li~~a  119 (179)
                      +.+...++++   ..|++|++.
T Consensus        80 ~~~~~~~f~~---~~DvVv~a~   98 (312)
T cd01489          80 DPDFNVEFFK---QFDLVFNAL   98 (312)
T ss_pred             CccchHHHHh---cCCEEEECC
Confidence            5322233443   466666654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.58  E-value=0.017  Score=45.28  Aligned_cols=84  Identities=20%  Similarity=0.191  Sum_probs=55.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH-----HHHHHHhhcCceEEEEEeeCCCHHH--H-HH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE-----AKQSIQLATGIEVATYSADVRDFDA--V-KT  104 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~-----~~~~~~~~~~~~v~~~~~D~~~~~~--v-~~  104 (179)
                      ..+.||++.|.|- |.||+++|+.+...|++|+..++.....+.     ..+++.  ...++..+.+.+++...  + ++
T Consensus       141 ~~L~gktvGIiG~-G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell--~~sDvv~lh~Plt~~T~~li~~~  217 (311)
T PRK08410        141 GEIKGKKWGIIGL-GTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELL--KTSDIISIHAPLNEKTKNLIAYK  217 (311)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHh--hcCCEEEEeCCCCchhhcccCHH
Confidence            3589999999999 999999999999999999999885421110     111221  24677778888776442  2 34


Q ss_pred             HHHhhCCCcEEEecC
Q 030328          105 ALDEAGPVDVLVVNQ  119 (179)
Q Consensus       105 ~~~~~~~id~li~~a  119 (179)
                      .+++.++=-++||.+
T Consensus       218 ~~~~Mk~~a~lIN~a  232 (311)
T PRK08410        218 ELKLLKDGAILINVG  232 (311)
T ss_pred             HHHhCCCCeEEEECC
Confidence            455554333455544

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.57  E-value=0.029  Score=41.13  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=35.5

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ...++++|+++|.|+ |.+|...++.|.+.|++|++++++.
T Consensus         4 l~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          4 LMIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             eEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            345689999999999 9999999999999999999998754

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.57  E-value=0.021  Score=45.34  Aligned_cols=41  Identities=32%  Similarity=0.349  Sum_probs=34.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~   77 (179)
                      .+++++|.|+ |++|...++.+...|++ |+++++++++.+..
T Consensus       176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~  217 (358)
T TIGR03451       176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA  217 (358)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            5789999986 99999999998899996 88898887765543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.56  E-value=0.07  Score=42.16  Aligned_cols=65  Identities=22%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH---HHH-hhcCceEEEEEeeCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ---SIQ-LATGIEVATYSADVRD   98 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~-~~~~~~v~~~~~D~~~   98 (179)
                      ..++++++.|.|. |.||+++|+.|...|++|++.+++++......+   .+. .....++....+..+.
T Consensus       142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~  210 (330)
T PRK12480        142 KPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK  210 (330)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH
Confidence            3579999999998 889999999999999999999998754322111   111 1225567777777664

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.55  E-value=0.0053  Score=43.27  Aligned_cols=45  Identities=29%  Similarity=0.423  Sum_probs=34.4

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      ..+++||+++|.|.+.-+|+.++..|.++|++|..+..+.+..++
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~   75 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE   75 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc
Confidence            345899999999999999999999999999999988776554443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.54  E-value=0.025  Score=44.70  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=35.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      ..+.||++.|.|. |.||+++|+.+...|++|++.+|+.+.
T Consensus       146 ~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  185 (333)
T PRK13243        146 YDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP  185 (333)
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            3579999999999 999999999999999999999987543

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.54  E-value=0.0083  Score=46.08  Aligned_cols=43  Identities=23%  Similarity=0.271  Sum_probs=37.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQS   80 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~   80 (179)
                      +++++|.|| ||.+++++..|++.|+. |++++|+.++.++..+.
T Consensus       122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~  165 (272)
T PRK12550        122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL  165 (272)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            578999998 99999999999999975 99999998877766554

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=96.54  E-value=0.016  Score=45.36  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .+++++|.|+++++|.++++.+...|++++++.++.
T Consensus       146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~  181 (341)
T cd08290         146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDR  181 (341)
T ss_pred             CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            578999999999999999999999999998888765

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.53  E-value=0.034  Score=40.60  Aligned_cols=38  Identities=18%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARS   70 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~   70 (179)
                      ...+++++++|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus        16 Q~~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          16 QKRLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence            34578899999997 66999999999999976 7788765

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.53  E-value=0.026  Score=45.30  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      .+.+++|.|+ |++|...++.....|++|+++++++++
T Consensus       178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~  214 (375)
T PLN02178        178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEK  214 (375)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            5789999987 899999999999999999998877554

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.022  Score=47.15  Aligned_cols=77  Identities=17%  Similarity=0.173  Sum_probs=50.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++++++|.|+ |++|.++|+.|.++|++|.+++++++. .+...+.+.. .+..  ++..+-..         .....|
T Consensus        14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~-~gv~--~~~~~~~~---------~~~~~D   80 (480)
T PRK01438         14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEA-LGAT--VRLGPGPT---------LPEDTD   80 (480)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHH-cCCE--EEECCCcc---------ccCCCC
Confidence            56889999998 789999999999999999999976542 2222333332 2333  32222111         112579


Q ss_pred             EEEecCCCCCC
Q 030328          114 VLVVNQGVFVP  124 (179)
Q Consensus       114 ~li~~ag~~~~  124 (179)
                      .+|...|....
T Consensus        81 ~Vv~s~Gi~~~   91 (480)
T PRK01438         81 LVVTSPGWRPD   91 (480)
T ss_pred             EEEECCCcCCC
Confidence            99999887543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.53  E-value=0.0091  Score=42.07  Aligned_cols=42  Identities=19%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL   74 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~   74 (179)
                      ...+.||+++|.|- |.+|+.+|+.|...|++|++++.++.+.
T Consensus        18 ~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~a   59 (162)
T PF00670_consen   18 NLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRA   59 (162)
T ss_dssp             -S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHH
T ss_pred             ceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHH
Confidence            34579999999999 8999999999999999999999998643

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.52  E-value=0.023  Score=44.74  Aligned_cols=86  Identities=21%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH------H-hhcCceEEEEEeeCCCHHH--H-
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI------Q-LATGIEVATYSADVRDFDA--V-  102 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~------~-~~~~~~v~~~~~D~~~~~~--v-  102 (179)
                      ..+.+|++.|.|. |+||+++|++|...|..+.-..|++...++..+..      . .....++..+.+.++....  + 
T Consensus       158 ~~~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liN  236 (336)
T KOG0069|consen  158 YDLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLIN  236 (336)
T ss_pred             ccccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhh
Confidence            3578999999999 89999999999999955666666554333322211      1 1224566777777765332  2 


Q ss_pred             HHHHHhhCCCcEEEecC
Q 030328          103 KTALDEAGPVDVLVVNQ  119 (179)
Q Consensus       103 ~~~~~~~~~id~li~~a  119 (179)
                      ++++++.++=-++||+|
T Consensus       237 k~~~~~mk~g~vlVN~a  253 (336)
T KOG0069|consen  237 KKFIEKMKDGAVLVNTA  253 (336)
T ss_pred             HHHHHhcCCCeEEEecc
Confidence            33455555545677765

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.52  E-value=0.024  Score=44.93  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      .+++++|+|+ |++|...++.+...|++|++++++
T Consensus       172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence            6789999986 999999999888999999999984

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.51  E-value=0.024  Score=45.24  Aligned_cols=41  Identities=29%  Similarity=0.355  Sum_probs=34.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|+|+ |++|...++.+...|+ +|+.+++++++.+..
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a  226 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA  226 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            5889999986 8999999999889998 699999988765543

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.50  E-value=0.016  Score=43.37  Aligned_cols=75  Identities=24%  Similarity=0.324  Sum_probs=52.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +.++++|=.|++||   -++..+++.|++|+.+|-+++..+.....- ...+..+.+.      ...++++....+.+|+
T Consensus        58 l~g~~vLDvGCGgG---~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha-~e~gv~i~y~------~~~~edl~~~~~~FDv  127 (243)
T COG2227          58 LPGLRVLDVGCGGG---ILSEPLARLGASVTGIDASEKPIEVAKLHA-LESGVNIDYR------QATVEDLASAGGQFDV  127 (243)
T ss_pred             CCCCeEEEecCCcc---HhhHHHHHCCCeeEEecCChHHHHHHHHhh-hhccccccch------hhhHHHHHhcCCCccE
Confidence            68999999999999   789999999999999999998776544322 2223332221      2234555554467888


Q ss_pred             EEecC
Q 030328          115 LVVNQ  119 (179)
Q Consensus       115 li~~a  119 (179)
                      +++.-
T Consensus       128 V~cmE  132 (243)
T COG2227         128 VTCME  132 (243)
T ss_pred             EEEhh
Confidence            77654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.49  E-value=0.038  Score=43.31  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=34.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ..+++|++.|.|- |.||+++|+.|...|++|++++++.+
T Consensus       132 ~~l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~  170 (312)
T PRK15469        132 YHREDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRK  170 (312)
T ss_pred             CCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3578999999998 89999999999999999999987654

>PLN02602 lactate dehydrogenase

Probab=96.48  E-value=0.17  Score=40.36  Aligned_cols=76  Identities=18%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++.|+|+ |.+|.++|..++.+|.  +++++|.+++.++....++.-..  .... -+.. -.+.       +....-|
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~-~~dy-------~~~~daD  107 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILA-STDY-------AVTAGSD  107 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEe-CCCH-------HHhCCCC
Confidence            69999997 9999999999998874  59999998876655555553211  0111 1111 1122       2234789


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|..||...
T Consensus       108 iVVitAG~~~  117 (350)
T PLN02602        108 LCIVTAGARQ  117 (350)
T ss_pred             EEEECCCCCC
Confidence            9999999754

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.45  E-value=0.011  Score=46.42  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=45.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH---HHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE---EAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~---~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      .+.||++.|.|- |.||+++|+.+...|++|+..++......   ...+++.  ...++..+.+.++...
T Consensus       145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell--~~sDiv~l~lPlt~~T  211 (317)
T PRK06487        145 ELEGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELL--PQVDALTLHCPLTEHT  211 (317)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHH--HhCCEEEECCCCChHH
Confidence            589999999999 99999999999999999999887532110   0111221  2356677777766543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.45  E-value=0.018  Score=42.95  Aligned_cols=36  Identities=22%  Similarity=0.485  Sum_probs=33.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe---EEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR---VSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~---v~~~~r~   70 (179)
                      ++++++++|.|| |+.|.+++..|.+.|.+   +++++|+
T Consensus        22 ~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            578899999999 99999999999999975   9999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=96.45  E-value=0.052  Score=41.00  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=30.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC-----------CeEEEEecCh
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG-----------ARVSILARSG   71 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g-----------~~v~~~~r~~   71 (179)
                      .+..+++|.|+ ||+|..+++.|++.|           .++.++|.+.
T Consensus         9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            36779999999 899999999999864           2788888753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PLN02928 oxidoreductase family protein

Probab=96.44  E-value=0.03  Score=44.53  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=34.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ..+.||++.|.|. |.||+++|+.+...|++|+.++|+.
T Consensus       155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~  192 (347)
T PLN02928        155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSW  192 (347)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC
Confidence            3588999999999 9999999999999999999999863

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.44  E-value=0.045  Score=41.02  Aligned_cols=82  Identities=22%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChh-------------------HHHHHHHHHHh-hcCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGE-------------------KLEEAKQSIQL-ATGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~-------------------~~~~~~~~~~~-~~~~~v~~~   92 (179)
                      .+++++++|.|+ ||+|..+++.|+..|. +++++|.+.-                   +.+...+.+.. ++..++..+
T Consensus         8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            367889999999 8999999999999996 5888886531                   22333333332 234555555


Q ss_pred             EeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           93 SADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        93 ~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ...++ ++...+++.  ..+|++|.+.
T Consensus        87 ~~~i~-~~~~~~l~~--~~~D~Vvdai  110 (231)
T cd00755          87 EEFLT-PDNSEDLLG--GDPDFVVDAI  110 (231)
T ss_pred             eeecC-HhHHHHHhc--CCCCEEEEcC
Confidence            55444 334444442  2467666654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.44  E-value=0.046  Score=43.24  Aligned_cols=41  Identities=32%  Similarity=0.404  Sum_probs=36.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|.|+ |++|...++.+...|++|+++++++++.+..
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            5889999999 9999999999999999999999988765533

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=96.41  E-value=0.048  Score=43.21  Aligned_cols=39  Identities=33%  Similarity=0.476  Sum_probs=33.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLE   75 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~   75 (179)
                      .+++++|+| +|++|.++++.+...|+ +|+++++++++.+
T Consensus       177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~  216 (361)
T cd08231         177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLE  216 (361)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            688999997 59999999999999999 8999988876554

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=96.41  E-value=0.04  Score=43.90  Aligned_cols=41  Identities=27%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|+ |++|...++.....|+ +|+.+++++++.+..
T Consensus       184 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~  225 (365)
T cd08277         184 PGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA  225 (365)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            5889999975 9999999998889998 689999887765533

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.41  E-value=0.24  Score=38.90  Aligned_cols=113  Identities=18%  Similarity=0.239  Sum_probs=65.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcC--ceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATG--IEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++.|+|+ |.+|.++|..++.+|.  +++++|.+++.++....++.....  .......  -+|.+   .    ....|
T Consensus         4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~--~~dy~---~----~~~ad   73 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA--DKDYS---V----TANSK   73 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE--CCCHH---H----hCCCC
Confidence            47899997 9999999999998874  489999988766655555542110  1111111  12222   2    33689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ++|.+||....+   .++..+   .++.|+.=    .+...+.+.+..  ..+.++++|
T Consensus        74 ivvitaG~~~k~---g~~R~d---ll~~N~~i----~~~~~~~i~~~~--p~~~vivvs  120 (312)
T cd05293          74 VVIVTAGARQNE---GESRLD---LVQRNVDI----FKGIIPKLVKYS--PNAILLVVS  120 (312)
T ss_pred             EEEECCCCCCCC---CCCHHH---HHHHHHHH----HHHHHHHHHHhC--CCcEEEEcc
Confidence            999999975432   234433   35555433    344444444432  223555554

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.40  E-value=0.029  Score=46.25  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=36.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL   74 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~   74 (179)
                      ..+.||+++|.|.+ .||+.+|+++...|++|+++++++.+.
T Consensus       250 ~~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga~ViV~e~dp~~a  290 (476)
T PTZ00075        250 VMIAGKTVVVCGYG-DVGKGCAQALRGFGARVVVTEIDPICA  290 (476)
T ss_pred             CCcCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchhH
Confidence            45899999999985 799999999999999999998876543

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=96.40  E-value=0.032  Score=43.40  Aligned_cols=42  Identities=40%  Similarity=0.510  Sum_probs=36.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|+++++|.++++.+...|++++.+.+++++.+..
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  181 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC  181 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999988888887655443

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=96.40  E-value=0.043  Score=44.53  Aligned_cols=43  Identities=21%  Similarity=0.273  Sum_probs=35.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC---eEEEEecChhHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA---RVSILARSGEKLEEAK   78 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~   78 (179)
                      .+.+++|.|++|++|...++.+...|+   +|+++++++++.+...
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~  220 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ  220 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH
Confidence            578999999999999999888777654   7999999988766443

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.39  E-value=0.053  Score=40.71  Aligned_cols=77  Identities=21%  Similarity=0.300  Sum_probs=46.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChh-------------------HHHHHHHHHHh-hcCceEEEEEeeCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGAR-VSILARSGE-------------------KLEEAKQSIQL-ATGIEVATYSADVR   97 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~-------------------~~~~~~~~~~~-~~~~~v~~~~~D~~   97 (179)
                      +++|.|+ ||+|..+++.|+..|.. +.++|.+.-                   +.+...+.+.. .+..++..+..+++
T Consensus         1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            3788886 89999999999999966 778777531                   12222222322 23455666666665


Q ss_pred             CHHHH-HHHHHhhCCCcEEEecC
Q 030328           98 DFDAV-KTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        98 ~~~~v-~~~~~~~~~id~li~~a  119 (179)
                      +.++. .++++   .+|++|.+.
T Consensus        80 ~~~~~~~~f~~---~~DvVi~a~   99 (234)
T cd01484          80 PEQDFNDTFFE---QFHIIVNAL   99 (234)
T ss_pred             hhhhchHHHHh---CCCEEEECC
Confidence            43332 22333   567777654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.38  E-value=0.097  Score=42.97  Aligned_cols=101  Identities=13%  Similarity=0.052  Sum_probs=64.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc-------CC--eEEEEecChhHHHHHHHHHHhhc---CceEEEEEeeCCCHHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKE-------GA--RVSILARSGEKLEEAKQSIQLAT---GIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~-------g~--~v~~~~r~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      ++.|+|++|.+|.++|..++.+       |.  +++++|++++.++....++....   ..++. +..  .+.       
T Consensus       102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~-i~~--~~y-------  171 (444)
T PLN00112        102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVS-IGI--DPY-------  171 (444)
T ss_pred             EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceE-Eec--CCH-------
Confidence            6999999999999999999988       64  68999999988776666664211   11211 111  121       


Q ss_pred             HhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHh
Q 030328          107 DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK  159 (179)
Q Consensus       107 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~  159 (179)
                      +.+...|++|..||....+   .++..+   .++.|+.=    .+...+.+.+
T Consensus       172 e~~kdaDiVVitAG~prkp---G~tR~d---Ll~~N~~I----~k~i~~~I~~  214 (444)
T PLN00112        172 EVFQDAEWALLIGAKPRGP---GMERAD---LLDINGQI----FAEQGKALNE  214 (444)
T ss_pred             HHhCcCCEEEECCCCCCCC---CCCHHH---HHHHHHHH----HHHHHHHHHH
Confidence            2334789999999974322   123333   46666543    3444445544

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=96.38  E-value=0.042  Score=42.91  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=36.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|+++.+|.++++.+...|++++++++++++.+..
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~  203 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV  203 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999887765543

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.36  E-value=0.035  Score=43.52  Aligned_cols=41  Identities=29%  Similarity=0.388  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|.| ++++|.++++.+...|++|+.+++++++.+..
T Consensus       163 ~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~  203 (333)
T cd08296         163 PGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLA  203 (333)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence            578999999 79999999999999999999999987765543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=96.34  E-value=0.041  Score=42.96  Aligned_cols=41  Identities=32%  Similarity=0.405  Sum_probs=34.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEA   77 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~   77 (179)
                      +.+++|.|+++++|.++++..... |++|+.+++++++.+..
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l  190 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWV  190 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHH
Confidence            789999999999999998877777 99999998887654433

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=96.33  E-value=0.035  Score=43.79  Aligned_cols=76  Identities=24%  Similarity=0.313  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+++++|.|+ +++|...++.+...|+ +|+++++++++.+.. .++    +.+.   ..|..+.+-.+++.+..  +++
T Consensus       172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~----ga~~---~i~~~~~~~~~~l~~~~~~~~~  242 (351)
T cd08233         172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EEL----GATI---VLDPTEVDVVAEVRKLTGGGGV  242 (351)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh----CCCE---EECCCccCHHHHHHHHhCCCCC
Confidence            5889999985 8999999999999999 788888887765433 222    3322   12333322222332221  248


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |+++++.|
T Consensus       243 d~vid~~g  250 (351)
T cd08233         243 DVSFDCAG  250 (351)
T ss_pred             CEEEECCC
Confidence            88888876

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK14851 hypothetical protein; Provisional

Probab=96.33  E-value=0.052  Score=46.95  Aligned_cols=81  Identities=22%  Similarity=0.276  Sum_probs=56.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh-------------------hHHHHHHHHHHh-hcCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG-------------------EKLEEAKQSIQL-ATGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~-------------------~~~~~~~~~~~~-~~~~~v~~~   92 (179)
                      .+++++|+|.|+ ||+|..++..|+..|.. +.++|.+.                   .+.+...+.+.. ++..++..+
T Consensus        40 kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~  118 (679)
T PRK14851         40 RLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF  118 (679)
T ss_pred             HHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            478999999997 89999999999999965 77777642                   123333333332 345677777


Q ss_pred             EeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           93 SADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        93 ~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ...++ .++++++++   .+|++|.+.
T Consensus       119 ~~~i~-~~n~~~~l~---~~DvVid~~  141 (679)
T PRK14851        119 PAGIN-ADNMDAFLD---GVDVVLDGL  141 (679)
T ss_pred             ecCCC-hHHHHHHHh---CCCEEEECC
Confidence            77776 455666666   578877554

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.30  E-value=0.017  Score=44.56  Aligned_cols=43  Identities=35%  Similarity=0.407  Sum_probs=36.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+++||+++|.|.|.-+|+.++..|.++|++|.++....+.++
T Consensus       153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~  195 (285)
T PRK14191        153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS  195 (285)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH
Confidence            4679999999999999999999999999999988766544443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.29  E-value=0.075  Score=41.41  Aligned_cols=111  Identities=19%  Similarity=0.281  Sum_probs=64.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCc--eEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           40 VFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGI--EVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~--~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +.|.|+ |++|.++|..++.+|  .+++++|.+++..+....++......  .......  ++       .+.....|++
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~-------~~~l~~aDiV   70 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD-------YADAADADIV   70 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC-------HHHhCCCCEE
Confidence            357887 679999999999998  67999999988777666666432111  1111111  11       1233478999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      |.++|....+   .++..+   .+..|+.    +.+...+.+++..  ..+.++++|
T Consensus        71 Iitag~p~~~---~~~R~~---l~~~n~~----i~~~~~~~i~~~~--p~~~viv~s  115 (300)
T cd00300          71 VITAGAPRKP---GETRLD---LINRNAP----ILRSVITNLKKYG--PDAIILVVS  115 (300)
T ss_pred             EEcCCCCCCC---CCCHHH---HHHHHHH----HHHHHHHHHHHhC--CCeEEEEcc
Confidence            9999974432   123332   3444443    3344444444433  233566554

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=96.29  E-value=0.048  Score=42.94  Aligned_cols=116  Identities=14%  Similarity=0.067  Sum_probs=63.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-------RVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ++.|+||+|.+|.++|..|..+|.       +++++|.++.  .++....++..........  ..++.     .-.+..
T Consensus         5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~--~~i~~-----~~~~~~   77 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAG--VVATT-----DPEEAF   77 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCC--cEEec-----ChHHHh
Confidence            689999999999999999998874       6899998652  2343333332110000000  00110     112233


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ...|++|..||.... +  ..+..+   .++.|+.-.    +...+.+.+... ..+.++++|
T Consensus        78 ~daDvVVitAG~~~k-~--g~tR~d---ll~~Na~i~----~~i~~~i~~~~~-~~~iiivvs  129 (323)
T TIGR01759        78 KDVDAALLVGAFPRK-P--GMERAD---LLSKNGKIF----KEQGKALNKVAK-KDVKVLVVG  129 (323)
T ss_pred             CCCCEEEEeCCCCCC-C--CCcHHH---HHHHHHHHH----HHHHHHHHhhCC-CCeEEEEeC
Confidence            478999999997532 1  234333   466666444    444444444422 123555544

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.28  E-value=0.054  Score=42.55  Aligned_cols=36  Identities=36%  Similarity=0.539  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .+.+++|.|+++++|.++++.+...|++++.++++.
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~  212 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA  212 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence            588999999999999999999999999998887654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.28  E-value=0.047  Score=43.03  Aligned_cols=40  Identities=33%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~   76 (179)
                      .+++++|.|+ |++|...++.+...|++ |+++++++++.+.
T Consensus       160 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~  200 (347)
T PRK10309        160 EGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLAL  200 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence            5789999975 99999999999999998 6788888776553

>PRK07411 hypothetical protein; Validated

Probab=96.27  E-value=0.055  Score=43.75  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~   70 (179)
                      .+++.+|+|.|+ ||+|..+++.|+..|.. +.++|.+
T Consensus        35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            467889999999 89999999999999965 7787765

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=96.27  E-value=0.037  Score=43.08  Aligned_cols=41  Identities=22%  Similarity=0.332  Sum_probs=35.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .+.+++|.|+++.+|.++++.+...|++++.+++++++.+.
T Consensus       140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~  180 (327)
T PRK10754        140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQR  180 (327)
T ss_pred             CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            57899999999999999999999999999999888765543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.26  E-value=0.015  Score=41.28  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=33.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      +...+++|+|+ |..|...++-+...|++++..+.+.+..++.
T Consensus        18 ~~p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~   59 (168)
T PF01262_consen   18 VPPAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPDERPERLRQL   59 (168)
T ss_dssp             E-T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred             CCCeEEEEECC-CHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence            45678999996 8999999999999999999999987765543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.26  E-value=0.03  Score=35.03  Aligned_cols=36  Identities=28%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEec
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKE-GARVSILAR   69 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r   69 (179)
                      .++++|+++|.|+ |..|+.+++.+.+. +.++.+++|
T Consensus        19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3468899999999 99999999999998 566777777

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=96.26  E-value=0.056  Score=42.44  Aligned_cols=75  Identities=25%  Similarity=0.371  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.+++|+|+++++|.++++.....|++|+.+.++ ++.+ ..+++    +.+.   ..|..+.+..+++. ..+.+|.+
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~-~~~~~----g~~~---~~~~~~~~~~~~l~-~~~~vd~v  231 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIP-LVKSL----GADD---VIDYNNEDFEEELT-ERGKFDVI  231 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHH-HHHHh----CCce---EEECCChhHHHHHH-hcCCCCEE
Confidence            48999999999999999999999999998887764 2221 22222    2221   12333333233332 23468888


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      +++.|
T Consensus       232 i~~~g  236 (350)
T cd08248         232 LDTVG  236 (350)
T ss_pred             EECCC
Confidence            88765

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=96.25  E-value=0.046  Score=42.37  Aligned_cols=40  Identities=30%  Similarity=0.388  Sum_probs=35.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      +.+++|.|+++++|.++++.....|++|+++++++++.+.
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~  186 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADY  186 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            4689999999999999999888999999999998765543

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=96.25  E-value=0.033  Score=43.51  Aligned_cols=93  Identities=19%  Similarity=0.279  Sum_probs=56.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhc---CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLAT---GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +++.|+|| |++|.++|..|..++.  .++++|.+++..+-...++....   +.. ..+..| .+       .+.+...
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~-~~i~~~-~~-------y~~~~~a   70 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSD-VKITGD-GD-------YEDLKGA   70 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCc-eEEecC-CC-------hhhhcCC
Confidence            46889999 9999999999988763  68999998655444333332110   111 111221 11       2333478


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHH
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS  146 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~  146 (179)
                      |+++..||....+.   ++.++   .++.|+.=.
T Consensus        71 DiVvitAG~prKpG---mtR~D---Ll~~Na~I~   98 (313)
T COG0039          71 DIVVITAGVPRKPG---MTRLD---LLEKNAKIV   98 (313)
T ss_pred             CEEEEeCCCCCCCC---CCHHH---HHHhhHHHH
Confidence            99999999765432   34444   356665433

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.25  E-value=0.065  Score=43.36  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~   70 (179)
                      .+++.+|+|.|+ ||+|..++..|+..|.. +.++|.+
T Consensus        39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence            467889999999 89999999999999965 7788765

>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised

Probab=96.25  E-value=0.013  Score=40.81  Aligned_cols=42  Identities=33%  Similarity=0.489  Sum_probs=35.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL   83 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~   83 (179)
                      |+.+|+.+-+|+++|..|.++|.+|.+.  +.++.+.+..++..
T Consensus         1 V~L~G~~sKvaraiA~~LC~rgv~V~m~--~~~~y~~lk~~~~~   42 (164)
T PF12076_consen    1 VFLTGNTSKVARAIALALCRRGVQVVML--SKERYESLKSEAPE   42 (164)
T ss_pred             CeecccccHHHHHHHHHHHhcCCEEEEe--cHHHHHHHHHHcCH
Confidence            5789999999999999999999999988  55666766666543

This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.24  E-value=0.015  Score=47.20  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=37.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .+.|++++|.|+ |.||+.+++.+...|++|+++++++.+.+.
T Consensus       199 ~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~  240 (413)
T cd00401         199 MIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQ  240 (413)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHH
Confidence            468999999999 799999999999999999999998776543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.22  E-value=0.012  Score=45.62  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=35.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cCh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSG   71 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~   71 (179)
                      .+++||++.|.|.++-+|+.+|..|.++|++|.++. |+.
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~  193 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR  193 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence            357999999999999999999999999999999985 554

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.22  E-value=0.35  Score=37.86  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=62.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhc----CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLAT----GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++.|.|+ |.+|..+|..++.+|.  +++++|.+++.++....++.-..    ...+....   .+       .+.....
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~---~~-------y~~~~~a   69 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA---GD-------YDDCADA   69 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE---CC-------HHHhCCC
Confidence            3678898 9999999999998874  59999998876665555554211    11233222   22       2334478


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ  161 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~  161 (179)
                      |++|..||....+.   .+.+ =.+.++.|+.    +.+...|.+.+..
T Consensus        70 DivvitaG~~~kpg---~tr~-R~dll~~N~~----I~~~i~~~i~~~~  110 (307)
T cd05290          70 DIIVITAGPSIDPG---NTDD-RLDLAQTNAK----IIREIMGNITKVT  110 (307)
T ss_pred             CEEEECCCCCCCCC---CCch-HHHHHHHHHH----HHHHHHHHHHHhC
Confidence            99999999754321   2310 1223555553    4455555555443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.20  E-value=0.13  Score=40.12  Aligned_cols=76  Identities=22%  Similarity=0.339  Sum_probs=48.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhc---CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLAT---GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++.|.|+ |.+|..+|..++..|. +|+++|++++.++....++....   +.... +.. .++.   +    .....|
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~-i~~-~~d~---~----~~~~aD   72 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTK-ITG-TNDY---E----DIAGSD   72 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcE-EEe-CCCH---H----HHCCCC
Confidence            57899999 9999999999999874 89999998876544333322110   11111 111 1222   1    223689


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|..+|...
T Consensus        73 iVii~~~~p~   82 (307)
T PRK06223         73 VVVITAGVPR   82 (307)
T ss_pred             EEEECCCCCC
Confidence            9999998643

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.20  E-value=0.07  Score=42.56  Aligned_cols=76  Identities=26%  Similarity=0.348  Sum_probs=49.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH-HHHHHHHHhh--CC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF-DAVKTALDEA--GP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~v~~~~~~~--~~  111 (179)
                      .+.+++|.|+ |++|...++.+...|+ +|+++++++++.+.. +++    +.+..   .|..+. +++.+.+.+.  ++
T Consensus       186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l----Ga~~~---i~~~~~~~~~~~~v~~~~~~g  256 (368)
T cd08300         186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF----GATDC---VNPKDHDKPIQQVLVEMTDGG  256 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc----CCCEE---EcccccchHHHHHHHHHhCCC
Confidence            5889999985 8999999999999999 699999988766533 222    33221   233322 1233322221  36


Q ss_pred             CcEEEecCC
Q 030328          112 VDVLVVNQG  120 (179)
Q Consensus       112 id~li~~ag  120 (179)
                      +|+++.+.|
T Consensus       257 ~d~vid~~g  265 (368)
T cd08300         257 VDYTFECIG  265 (368)
T ss_pred             CcEEEECCC
Confidence            888888876

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.19  E-value=0.032  Score=43.74  Aligned_cols=83  Identities=12%  Similarity=0.222  Sum_probs=53.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH-H---HHHHHHHhhcCceEEEEEeeCCCHHH--H-HHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL-E---EAKQSIQLATGIEVATYSADVRDFDA--V-KTAL  106 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~-~---~~~~~~~~~~~~~v~~~~~D~~~~~~--v-~~~~  106 (179)
                      .++||++.|.|- |.||+++|+.+...|++|+..++..... .   ...+++.  ...++..+.+.++....  + ++.+
T Consensus       144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell--~~sDiv~l~~Plt~~T~~li~~~~l  220 (314)
T PRK06932        144 DVRGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVL--KQADIVTLHCPLTETTQNLINAETL  220 (314)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHH--HhCCEEEEcCCCChHHhcccCHHHH
Confidence            588999999999 9999999999999999999888754211 0   0111221  24677777777776432  1 3345


Q ss_pred             HhhCCCcEEEecC
Q 030328          107 DEAGPVDVLVVNQ  119 (179)
Q Consensus       107 ~~~~~id~li~~a  119 (179)
                      ++.++=-++||.+
T Consensus       221 ~~mk~ga~lIN~a  233 (314)
T PRK06932        221 ALMKPTAFLINTG  233 (314)
T ss_pred             HhCCCCeEEEECC
Confidence            5554333455544

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.19  E-value=0.015  Score=47.73  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=33.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      ++.|.||.|.+|.++++.|.+.|++|.+++|+++..++
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~   39 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE   39 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHH
Confidence            68999999999999999999999999999998766433

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=96.19  E-value=0.054  Score=43.55  Aligned_cols=42  Identities=31%  Similarity=0.351  Sum_probs=36.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|+|++|++|.++++.+...|++++++++++++.+..
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~  234 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC  234 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            578999999999999999999999999998888887765543

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.19  E-value=0.071  Score=42.00  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHH-HcCCeEEEEecChhHHH--H------HHHHHHhhcCceEEEEEeeCCCHHH--H
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAA-KEGARVSILARSGEKLE--E------AKQSIQLATGIEVATYSADVRDFDA--V  102 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~-~~g~~v~~~~r~~~~~~--~------~~~~~~~~~~~~v~~~~~D~~~~~~--v  102 (179)
                      .+.||++.|.|- |.||+++|+.+. ..|++|+..++......  .      ..+++.  ...++..+.+.++....  +
T Consensus       142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell--~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLL--QESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHH--HhCCEEEEeCCCChHHhhcc
Confidence            589999999999 999999999997 78999998887632111  1      011121  24667777777775432  1


Q ss_pred             -HHHHHhhCCCcEEEecC
Q 030328          103 -KTALDEAGPVDVLVVNQ  119 (179)
Q Consensus       103 -~~~~~~~~~id~li~~a  119 (179)
                       ++.+++.++=-++||.+
T Consensus       219 ~~~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAG  236 (323)
T ss_pred             CHHHHhcCCCCeEEEECC
Confidence             23444444333455543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.18  E-value=0.025  Score=35.94  Aligned_cols=41  Identities=34%  Similarity=0.413  Sum_probs=32.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHcC---CeEEEE-ecChhHHHHHHHHH
Q 030328           40 VFITGGSSGIGLALAHQAAKEG---ARVSIL-ARSGEKLEEAKQSI   81 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g---~~v~~~-~r~~~~~~~~~~~~   81 (179)
                      +.+.|+ |.+|.++++.|.+.|   .+|.++ +|++++.++..++.
T Consensus         2 I~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~   46 (96)
T PF03807_consen    2 IGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY   46 (96)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh
Confidence            445555 999999999999999   889855 99988877666544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.17  E-value=0.024  Score=43.86  Aligned_cols=42  Identities=26%  Similarity=0.324  Sum_probs=36.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      -+++.|.|+ |.+|..+|..|+++|++|++.+++++..+...+
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~   45 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADRLEAGLA   45 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            367888888 899999999999999999999999887665443

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=96.16  E-value=0.056  Score=43.25  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.| ++++|.++++.+...|+ +|++++++.++.+..
T Consensus       190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a  231 (373)
T cd08299         190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA  231 (373)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            478999996 58999999999999999 799999887765544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK07574 formate dehydrogenase; Provisional

Probab=96.16  E-value=0.055  Score=43.65  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ..+.+|++.|.|. |.||+++|++|...|++|+..+|..
T Consensus       188 ~~L~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        188 YDLEGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             eecCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC
Confidence            3589999999999 7899999999999999999999875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.15  E-value=0.01  Score=41.79  Aligned_cols=39  Identities=26%  Similarity=0.438  Sum_probs=34.4

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR   69 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r   69 (179)
                      +...+++|++++|.|| |.+|...++.|.+.|++|.+++.
T Consensus         6 P~~l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719          6 PLMFNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             ceEEEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC
Confidence            3455789999999998 89999999999999999998854

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.15  E-value=0.024  Score=44.58  Aligned_cols=114  Identities=14%  Similarity=0.115  Sum_probs=64.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecChhH--HHHHHHHHHhhc---CceEEEEEeeCCCHHHHHHH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-------RVSILARSGEK--LEEAKQSIQLAT---GIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~~~--~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~~~  105 (179)
                      +++.|+||+|.+|.++|..++.+|.       +++++|.+++.  ++....++....   ..++.     ++. ++    
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-----i~~-~~----   72 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIV-----ITD-DP----   72 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceE-----Eec-Cc----
Confidence            4789999999999999999998874       68999986432  332222332110   01111     111 11    


Q ss_pred             HHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          106 LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       106 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      .+.....|++|.+||....+   ..+..+   .++.|+.    +.+...+.+.+... ..+.++++|
T Consensus        73 ~~~~~daDivvitaG~~~k~---g~tR~d---ll~~N~~----i~~~i~~~i~~~~~-~~~iiivvs  128 (322)
T cd01338          73 NVAFKDADWALLVGAKPRGP---GMERAD---LLKANGK----IFTAQGKALNDVAS-RDVKVLVVG  128 (322)
T ss_pred             HHHhCCCCEEEEeCCCCCCC---CCcHHH---HHHHHHH----HHHHHHHHHHhhCC-CCeEEEEec
Confidence            22334789999999975432   133333   3666654    34555555554431 123555554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
3tjr_A	301	Crystal Structure Of A Rv0851c Ortholog Short Chain		4e-15
1vl8_A	267	Crystal Structure Of Gluconate 5-dehydrogenase (tm0		2e-13
3p19_A	266	Improved Nadph-Dependent Blue Fluorescent Protein L		1e-12
1equ_A	327	Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin		3e-12
1fds_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C		3e-12
1fdu_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M		4e-12
1fdw_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M		4e-12
1a27_A	289	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C		4e-12
3tfo_A	264	Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car		1e-11
1iol_A	327	Estrogenic 17-beta Hydroxysteroid Dehydrogenase Com		1e-11
3rih_A	293	Crystal Structure Of A Putative Short Chain Dehydro		2e-11
1nxq_A	251	Crystal Structure Of R-Alcohol Dehydrogenase (Radh)		2e-11
1zjy_A	251	Structure Of R-Specific Alcohol Dehydrogenase (Muta		3e-11
2dtd_A	264	Structure Of Thermoplasma Acidophilum Aldohexose De		5e-11
2zk7_A	257	Structure Of A C-Terminal Deletion Mutant Of Thermo		5e-11
2yz7_A	260	X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F		9e-11
1ae1_A	273	Tropinone Reductase-I Complex With Nadp Length = 27		1e-10
3l77_A	235	X-Ray Structure Alcohol Dehydrogenase From Archaeon		1e-10
3tn7_A	257	Crystal Structure Of Short-Chain Alcohol Dehydrogen		1e-10
3sx2_A	278	Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Ca		2e-10
3uwr_A	286	Crystal Structure Of Carveol Dehydrogenase From Myc		2e-10
1bdb_A	277	Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From		2e-10
3osu_A	246	Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro		2e-10
3sj7_A	252	Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F		2e-10
1edo_A	244	The X-Ray Structure Of Beta-Keto Acyl Carrier Prote		2e-10
3sc4_A	285	Crystal Structure Of A Short Chain Dehydrogenase (A		3e-10
3oec_A	317	Crystal Structure Of Carveol Dehydrogenase From Myc		3e-10
1spx_A	278	Crystal Structure Of Glucose Dehydrogenase Of Caeno		3e-10
3pk0_A	262	Crystal Structure Of Short-Chain DehydrogenaseREDUC		6e-10
1w4z_A	281	Structure Of Actinorhodin Polyketide (Actiii) Reduc		7e-10
1xkq_A	280	Crystal Structure Of Short-Chain DehydrogenaseREDUC		7e-10
2rhr_B	277	P94l Actinorhodin Ketordeuctase Mutant, With Nadph		7e-10
4dc0_A	281	Crystal Structure Of F189w Actinorhodin Polyketide		7e-10
3csd_B	281	Actinorhodin Polyketide Ketoreductase Mutant P94l B		7e-10
4dbz_A	281	Crystal Structure Of V151l Actinorhodin Polyketide		7e-10
2rh4_A	277	Actinorhodin Ketoreductase, Actkr, With Nadph And I		7e-10
4dc1_A	281	Crystal Structure Of Y202f Actinorhodin Polyketide		7e-10
2ehd_A	234	Crystal Structure Analysis Of Oxidoreductase Length		9e-10
3tsc_A	277	Crystal Structure Of Short Chain Dehydrogenase Map_		9e-10
1zem_A	262	Crystal Structure Of Nad+-Bound Xylitol Dehydrogena		1e-09
3aus_A	269	Crystal Structure Of Bacillus Megaterium Glucose De		1e-09
3ay6_A	269	Crystal Structure Of Bacillus Megaterium Glucose De		1e-09
3ay7_A	269	Crystal Structure Of Bacillus Megaterium Glucose De		1e-09
3ctm_A	279	Crystal Structure Of A Carbonyl Reductase From Cand		2e-09
1h5q_A	265	Mannitol Dehydrogenase From Agaricus Bisporus Lengt		2e-09
2nm0_A	253	Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl		2e-09
2y93_A	281	Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2		3e-09
1x7g_A	261	Actinorhodin Polyketide Ketoreductase, Act Kr, With		3e-09
3i3o_A	291	2.06 Angstrom Resolution Crystal Structure Of A Sho		3e-09
3kvo_A	346	Crystal Structure Of The Catalytic Domain Of Human		3e-09
3uve_A	286	Crystal Structure Of Carveol Dehydrogenase ((+)-Tra		4e-09
3ijr_A	291	2.05 Angstrom Resolution Crystal Structure Of A Sho		4e-09
3cxr_A	291	Crystal Structure Of Gluconate 5-Dehydrogase From S		4e-09
2et6_A	604	(3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candid		4e-09
3gmd_A	264	Structure-Based Design Of 7-Azaindole-Pyrrolidines		4e-09
3ezl_A	256	Crystal Structure Of Acetyacetyl-Coa Reductase From		5e-09
4bb6_A	292	Free-Wilson And Structural Approaches To Co-Optimis		7e-09
4bb5_A	292	Free-Wilson And Structural Approaches To Co-Optimis		7e-09
2rbe_A	275	The Discovery Of 2-Anilinothiazolones As 11beta-Hsd		7e-09
1xu7_A	286	Crystal Structure Of The Interface Open Conformatio		7e-09
3ioy_A	319	Structure Of Putative Short-Chain Dehydrogenase (Sa		7e-09
3d5q_A	272	Crystal Structure Of 11b-Hsd1 In Complex With Triaz		7e-09
2ilt_A	275	Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W		8e-09
2irw_A	264	Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W		8e-09
3pdj_A	273	Crystal Structure Of Human 11-Beta-Hydroxysteroid D		8e-09
4fgs_A	273	Crystal Structure Of A Probable Dehydrogenase Prote		9e-09
2bel_A	283	Structure Of Human 11-Beta-Hydroxysteroid Dehydroge		9e-09
4hfr_A	272	Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In		9e-09
3ch6_A	286	Crystal Structure Of 11beta-Hsd1 Double Mutant (L26		9e-09
1y5m_A	276	The Crystal Structure Of Murine 11b-Hydroxysteroid		1e-08
3ai1_A	263	The Crystal Structure Of L-Sorbose Reductase From G		1e-08
1uzm_A	247	Maba From Mycobacterium Tuberculosis Length = 247		2e-08
2ntn_A	267	Crystal Structure Of Maba-c60v/g139a/s144l Length =		2e-08
2z1n_A	260	Crystal Structure Of Ape0912 From Aeropyrum Pernix		2e-08
3e03_A	274	Crystal Structure Of A Putative Dehydrogenase From		3e-08
1xhl_A	297	Crystal Structure Of Putative Tropinone Reductase-I		3e-08
3tl3_A	257	Structure Of A Short-Chain Type DehydrogenaseREDUCT		3e-08
1yb1_A	272	Crystal Structure Of Human 17-Beta-Hydroxysteroid D		3e-08
1uzl_A	247	Maba From Mycobacterium Tuberculosis Length = 247		3e-08
3lz6_A	263	Guinea Pig 11beta Hydroxysteroid Dehydrogenase With		3e-08
1xse_A	295	Crystal Structure Of Guinea Pig 11beta-Hydroxystero		4e-08
3g49_A	277	N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-		4e-08
3rkr_A	262	Crystal Structure Of A Metagenomic Short-Chain Oxid		4e-08
3dwf_A	276	Crystal Structure Of The Guinea Pig 11beta-Hydroxys		4e-08
3oml_A	613	Structure Of Full-Length Peroxisomal Multifunctiona		4e-08
3pgx_A	280	Crystal Structure Of A Putative Carveol Dehydrogena		4e-08
3nyw_A	250	Crystal Structure Of A Betaketoacyl-[acp] Reductase		5e-08
3ai3_A	263	The Crystal Structure Of L-Sorbose Reductase From G		5e-08
2jap_A	247	Clavulanic Acid Dehydrogenase: Structural And Bioch		6e-08
4fc6_A	277	Studies On Dcr Shed New Light On Peroxisomal Beta-O		7e-08
2cfc_A	250	Structural Basis For Stereo Selectivity In The (R)-		7e-08
3imf_A	257	1.99 Angstrom Resolution Crystal Structure Of A Sho		1e-07
2d1y_A	256	Crystal Structure Of Tt0321 From Thermus Thermophil		1e-07
1iy8_A	267	Crystal Structure Of Levodione Reductase Length = 2		2e-07
3t7c_A	299	Crystal Structure Of Carveol Dehydrogenase From Myc		2e-07
3v2g_A	271	Crystal Structure Of A DehydrogenaseREDUCTASE FROM		2e-07
2ztm_A	260	T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L		2e-07
1wmb_A	260	Crystal Structure Of Nad Dependent D-3-Hydroxybutyl		2e-07
2ztu_A	260	T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C		3e-07
3v8b_A	283	Crystal Structure Of A 3-Ketoacyl-Acp Reductase Fro		3e-07
1geg_A	256	Cryatal Structure Analysis Of Meso-2,3-Butanediol D		3e-07
2ew8_A	249	Crystal Structure Of The (s)-specific 1-phenylethan		4e-07
3rd5_A	291	Crystal Structure Of A Putative Uncharacterized Pro		5e-07
3enn_A	249	2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN		5e-07
1zbq_A	327	Crystal Structure Of Human 17-beta-hydroxysteroid D		6e-07
3emk_A	246	2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN		6e-07
3gdf_A	267	Crystal Structure Of The Nadp-Dependent Mannitol De		6e-07
3pxx_A	287	Crystal Structure Of Carveol Dehydrogenase From Myc		6e-07
3vtz_A	269	Structure Of Thermoplasma Volcanium Aldohexose Dehy		7e-07
3v2h_A	281	The Crystal Structure Of D-Beta-Hydroxybutyrate Deh		7e-07
1xq1_A	266	X-Ray Structure Of Putative Tropinone Reducatse Fro		8e-07
3asu_A	248	Crystal Structure Of Serine Dehydrogenase From Esch		8e-07
3o4r_A	261	Crystal Structure Of Human DehydrogenaseREDUCTASE (		1e-06
3u9l_A	324	The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr		1e-06
2zat_A	260	Crystal Structure Of A Mammalian Reductase Length =		1e-06
2ae2_A	260	Tropinone Reductase-Ii Complexed With Nadp+ And Pse		1e-06
1g6k_A	261	Crystal Structure Of Glucose Dehydrogenase Mutant E		1e-06
1ipe_A	259	Tropinone Reductase-Ii Complexed With Nadph Length		1e-06
1gco_A	261	Crystal Structure Of Glucose Dehydrogenase Complexe		1e-06
1rwb_A	261	Cooperative Effect Of Two Surface Amino Acid Mutati		1e-06
1gee_A	261	Crystal Structure Of Glucose Dehydrogenase Mutant Q		1e-06
4dml_A	269	3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn		2e-06
2q2q_A	255	Structure Of D-3-Hydroxybutyrate Dehydrogenase From		2e-06
3f9i_A	249	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-06
2uvd_A	246	The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier		3e-06
3r1i_A	276	Crystal Structure Of A Short-Chain Type Dehydrogena		3e-06
4iin_A	271	Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car		3e-06
3tox_A	280	Crystal Structure Of A Short Chain Dehydrogenase In		3e-06
3i4f_A	264	Structure Of Putative 3-oxoacyl-reductase From Baci		4e-06
1yxm_A	303	Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa		4e-06
1gz6_A	319	(3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat		4e-06
2hsd_A	253	The Refined Three-Dimensional Structure Of 3alpha,2		5e-06
1hdc_A	254	Mechanism Of Inhibition Of 3alpha,20beta-Hydroxyste		5e-06
3awd_A	260	Crystal Structure Of Gox2181 Length = 260		6e-06
2pnf_A	248	Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-		7e-06
3r3s_A	294	Structure Of The Ygha Oxidoreductase From Salmonell		9e-06
2hq1_A	247	Crystal Structure Of Orf 1438 A Putative GlucoseRIB		1e-05
2nwq_A	272	Short Chain Dehydrogenase From Pseudomonas Aerugino		1e-05
1k2w_A	256	Crystal Structure Of Sorbitol Dehydrogenase From R.		1e-05
4iqg_C	271	Crystal Structure Of Bpro0239 Oxidoreductase From P		1e-05
2b4q_A	276	Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex		1e-05
3gvc_A	277	Crystal Structure Of Probable Short-Chain Dehydroge		1e-05
1uls_A	245	Crystal Structure Of Tt0140 From Thermus Thermophil		1e-05
3s55_A	281	Crystal Structure Of A Putative Short-Chain Dehydro		1e-05
4e3z_A	272	Crystal Structure Of A Oxidoreductase From Rhizobiu		2e-05
3ucx_A	264	The Structure Of A Short Chain Dehydrogenase From M		2e-05
3sju_A	279	Hedamycin Polyketide Ketoreductase Bound To Nadph L		2e-05
3tzh_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-05
3lf1_A	265	Apo Structure Of The Short Chain Oxidoreductase Q9h		2e-05
3rsh_A	251	Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc		2e-05
3tzc_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-05
3t4x_A	267	Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDU		2e-05
1nff_A	260	Crystal Structure Of Rv2002 Gene Product From Mycob		3e-05
4imr_A	275	Crystal Structure Of 3-oxoacyl (acyl-carrier-protei		3e-05
1o5i_A	249	Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei		3e-05
3n74_A	261	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		3e-05
2cf2_E	226	Architecture Of Mammalian Fatty Acid Synthase Lengt		3e-05
1u7t_A	261	Crystal Structure Of AbadHSD10 WITH A BOUND INHIBIT		3e-05
1so8_A	261	Abeta-bound Human Abad Structure [also Known As 3-h		3e-05
2o23_A	265	The Structure Of Wild-Type Human Hadh2 (17beta-Hydr		4e-05
4dqx_A	277	Crystal Structure Of A Short Chain Dehydrogenase Fr		4e-05
1x1e_A	239	Crystal Structure Of Tt0495 Protein From Thermus Th		4e-05
1q7c_A	244	The Structure Of Betaketoacyl-[acp] Reductase Y151f		4e-05
2jah_A	247	Biochemical And Structural Analysis Of The Clavulan		5e-05
1i01_A	244	Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr		5e-05
1nfr_A	260	Rv2002 Gene Product From Mycobacterium Tuberculosis		5e-05
1wma_A	276	Crystal Structure Of Human Cbr1 In Complex With Hyd		8e-05
3rku_A	287	Substrate Fingerprint And The Structure Of Nadp+ De		9e-05
3d3w_A	244	Structure Of L-Xylulose Reductase With Bound Coenzy		1e-04
1pr9_A	244	Human L-Xylulose Reductase Holoenzyme Length = 244		1e-04
3d3w_B	245	Structure Of L-Xylulose Reductase With Bound Coenzy		1e-04
3uf0_A	273	Crystal Structure Of A Putative Nad(P) Dependent Gl		1e-04
3qlj_A	322	Crystal Structure Of A Short Chain Dehydrogenase Fr		1e-04
3qiv_A	253	Crystal Structure Of A Putative Short-Chain Dehydro		1e-04
2pfg_A	276	Crystal Structure Of Human Cbr1 In Complex With Big		1e-04
3tzk_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		1e-04
3u5t_A	267	The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr		1e-04
3m1a_A	281	The Crystal Structure Of A Short-Chain Dehydrogenas		1e-04
3nug_A	247	Crystal Structure Of Wild Type Tetrameric Pyridoxal		2e-04
2bd0_A	244	Chlorobium Tepidum Sepiapterin Reductase Complexed		2e-04
1hxh_A	253	Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID D		2e-04
3u09_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-04
3ndr_A	247	Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro		2e-04
1e6w_A	260	Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Co		2e-04
3op4_A	248	Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr		2e-04
1e3s_A	261	Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Co		2e-04
1e3w_A	261	Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Co		3e-04
3ftp_A	270	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		3e-04
4ibo_A	271	Crystal Structure Of A Putative Gluconate Dehydroge		3e-04
1n5d_A	288	Crystal Structure Of Porcine Testicular Carbonyl Re		3e-04
3a28_C	258	Crystal Structure Of L-2,3-Butanediol Dehydrogenase		3e-04
4g81_D	255	Crystal Structure Of A Hexonate Dehydrogenase Ortho		3e-04
3lyl_A	247	Structure Of 3-Oxoacyl-Acylcarrier Protein Reductas		4e-04
2hrb_A	274	Crystal Structure Of Human Carbonyl Reductase 3, Co		4e-04
3f1l_A	252	The 0.95 A Structure Of An Oxidoreductase, Ycik Fro		6e-04
3f5q_A	262	Crystal Structure Of Putative Short Chain Dehydroge		6e-04
3o26_A	311	The Structure Of Salutaridine Reductase From Papave		6e-04
3f1k_A	252	Crystal Structure Of Ycik From E. Coli, An Oxidored		7e-04
1yde_A	270	Crystal Structure Of Human Retinal Short-Chain Dehy		7e-04
1doh_A	283	Structure Of Trihydroxynaphthalene Reductase In Com		7e-04
1ybv_A	283	Structure Of Trihydroxynaphthalene Reductase In Com		7e-04
3f5s_A	255	Crystal Structure Of Putatitve Short Chain Dehydrog		8e-04
3e9q_A	273	Crystal Structure Of The Short Chain Dehydrogenase		8e-04

>pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain Dehydrogenase From Mycobacterium Paratuberculosis Length = 301

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R   +TGG+SGIGLA A + A+ GAR+ +       LE+A   ++   G +      DVR
Sbjct: 32  RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLR-GQGFDAHGVVCDVR 90
Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
             D +    DEA    G VDV+  N G+ V G L   + D+ R +ID+++ GS H ++A 
Sbjct: 91  HLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAF 150
Query: 154 LPLIKKRQNGGPASIALMSSQAGQV 178
           LP + ++  GG   IA  +S AG V
Sbjct: 151 LPRLLEQGTGG--HIAFTASFAGLV 173

>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ R   +TGGS G+G  +A   A+ G  V + +R+ E+  EA Q +    G+E   +  
Sbjct: 19  LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Query: 95  DVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV +++ VK  L    ++ G +D +V   G+      E   LDE R +I+VN+ G++++ 
Sbjct: 79  DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVC 138
Query: 151 KAALPLIKKRQN 162
           + A  L+++  N
Sbjct: 139 REAFSLLRESDN 150

>pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein Length = 266

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG SSGIG A+A + ++EG  + +LAR  E+L+       L   ++V     D   F
Sbjct: 19  VVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVT----DKYTF 74
Query: 100 D-AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK 158
           D A+  A    GP D +V N G+ + G+++ Q  +E + M DVN++G  + ++A L  +K
Sbjct: 75  DTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMK 134
Query: 159 KRQNGGPASIALMSSQAGQ 177
            R  G   +I  +SS AG+
Sbjct: 135 ARNCG---TIINISSIAGK 150

>pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin Complexed With Nadp+ Length = 327

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 40  VFITGGSSGIGLALA-------HQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           V ITG SSGIGL LA        Q+ K  A +  L   G +L EA +++    G  + T 
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETL 62
Query: 93  SADVRDFDAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
             DVRD  +V  A +    G VDVLV N G+ + G LE    D V  ++DVN++G+  M+
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 151 KAALPLIKKRQNG 163
           +A LP +K+R +G
Sbjct: 123 QAFLPDMKRRGSG 135

>pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With 17- Beta-Estradiol Length = 327

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 40  VFITGGSSGIGLALA-------HQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           V ITG SSGIGL LA        Q+ K  A +  L   G +L EA +++    G  + T 
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETL 62
Query: 93  SADVRDFDAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
             DVRD  +V  A +    G VDVLV N G+ + G LE    D V  ++DVN++G+  M+
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 151 KAALPLIKKRQNG 163
           +A LP +K+R +G
Sbjct: 123 QAFLPDMKRRGSG 135

>pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221l Complexed With Estradiol And Nadp+ Length = 327

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 40  VFITGGSSGIGLALA-------HQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           V ITG SSGIGL LA        Q+ K  A +  L   G +L EA +++    G  + T 
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETL 62
Query: 93  SADVRDFDAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
             DVRD  +V  A +    G VDVLV N G+ + G LE    D V  ++DVN++G+  M+
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 151 KAALPLIKKRQNG 163
           +A LP +K+R +G
Sbjct: 123 QAFLPDMKRRGSG 135

>pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221q Complexed With Estradiol Length = 327

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 40  VFITGGSSGIGLALA-------HQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           V ITG SSGIGL LA        Q+ K  A +  L   G +L EA +++    G  + T 
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETL 62
Query: 93  SADVRDFDAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
             DVRD  +V  A +    G VDVLV N G+ + G LE    D V  ++DVN++G+  M+
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 151 KAALPLIKKRQNG 163
           +A LP +K+R +G
Sbjct: 123 QAFLPDMKRRGSG 135

>pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C-Terminal Deletion Mutant Complexed With Estradiol And Nadp+ Length = 289

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 40  VFITGGSSGIGLALA-------HQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           V ITG SSGIGL LA        Q+ K  A +  L   G +L EA +++    G  + T 
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETL 62
Query: 93  SADVRDFDAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
             DVRD  +V  A +    G VDVLV N G+ + G LE    D V  ++DVN++G+  M+
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 151 KAALPLIKKRQNG 163
           +A LP +K+R +G
Sbjct: 123 QAFLPDMKRRGSG 135

>pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           + D+ + ITG S GIG  +A +    GA++ + AR   ++E     I+ A G  +A    
Sbjct: 2   VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQV-L 60
Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D  +V    + A+D  G +DVLV N GV     L    +DE   MIDVNI G    I
Sbjct: 61  DVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGI 120
Query: 151 KAALPLIKKRQNG 163
            A LP+++ +++G
Sbjct: 121 GAVLPIMEAQRSG 133

>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed 17-beta- Estradiol Length = 327

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 40  VFITGGSSGIGLALA-------HQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           V ITG SSGIGL LA        Q+ K  A +  L   G +L EA +++    G  + T 
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETL 62
Query: 93  SADVRDFDAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
             DVRD  +V  A +    G VDVLV N G+ + G LE    D V  +++VN++G+  M+
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLEVNVVGTVRML 122
Query: 151 KAALPLIKKRQNG 163
           +A LP +K+R +G
Sbjct: 123 QAFLPDMKRRGSG 135

>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 29  KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGI 87
           + V   +  R V +TGG+ GIG  +A   A+ GA V++ ARS  +L      + +L  G 
Sbjct: 33  RKVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAG- 91
Query: 88  EVATYSADVRD----FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
            V     DV D     DA +T +D  G +DV+  N G+F    L+  + +++  ++DVN+
Sbjct: 92  NVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNV 151
Query: 144 IGSFHMIKAAL-PLIKKRQNGGPASIALMSSQAGQV 178
            G+ + ++A L PL       G   + L SS  G V
Sbjct: 152 KGTVYTVQACLAPLTAS----GRGRVILTSSITGPV 183

>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD--- 98
           ITGG+ GIGLA+A +  +EGA+V I  R  +  E+A +S+     I+   + +   D   
Sbjct: 11  ITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWT 70
Query: 99  --FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
             FDA + A    GPV  LV N G+ V   +E  +  E R ++ VN+ G F   +  +  
Sbjct: 71  KLFDATEKAF---GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQR 127
Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           +K +  G  ASI  MSS  G VG
Sbjct: 128 MKNKGLG--ASIINMSSIEGFVG 148

>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD--- 98
           ITGG+ GIGLA+A +  +EGA+V I  R  +  E+A +S+     I+   + +   D   
Sbjct: 11  ITGGTLGIGLAIATKFVEEGAKVMITDRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWT 70
Query: 99  --FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
             FDA + A    GPV  LV N G+ V   +E  +  E R ++ VN+ G F   +  +  
Sbjct: 71  KLFDATEKAF---GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQR 127
Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           +K +  G  ASI  MSS  G VG
Sbjct: 128 MKNKGLG--ASIINMSSIEGFVG 148

>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (aldt) In Ligand-free Form Length = 264

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++D+ V +TG S GIG A+A +   EG++V  L  S     EAK        IE      
Sbjct: 6   LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDL--SIHDPGEAKYD-----HIE-----C 53
Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV + D VK ++D    E G + VLV N G+   G++E  S+ E R +IDVN+ G ++  
Sbjct: 54  DVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYAS 113
Query: 151 KAALPLIKKRQNGGPASIALMSSQA 175
           K A+P + + ++  P+ + + S QA
Sbjct: 114 KFAIPYMIRSRD--PSIVNISSVQA 136

>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (Aldt) Length = 257

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++D+ V +TG S GIG A+A +   EG++V  L  S     EAK        IE      
Sbjct: 13  LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDL--SIHDPGEAKYD-----HIE-----C 60
Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV + D VK ++D    E G + VLV N G+   G++E  S+ E R +IDVN+ G ++  
Sbjct: 61  DVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYAS 120
Query: 151 KAALPLIKKRQNGGPASIALMSSQA 175
           K A+P + + ++  P+ + + S QA
Sbjct: 121 KFAIPYMIRSRD--PSIVNISSVQA 143

>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYS 93
           +K +   +TG +SGIGLA+A + AK GA V I      E +E  + +++   G++    +
Sbjct: 2   LKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLN 61
Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           AD+ D  A +  + +A    G +D+LV N G+     +E   +D+   +I +N+   FH 
Sbjct: 62  ADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHG 121
Query: 150 IKAALPLIKKRQNG 163
             AALP+++K+  G
Sbjct: 122 TAAALPIMQKQGWG 135

>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  +K     +TGGS GIG A+  + A  GARV   +R+ ++L+E  + I    G+ V  
Sbjct: 16  RWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE-IWREKGLNVEG 74
Query: 92  YSADV-----RD--FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
              D+     RD     V    D  G +++LV N GV +  E +  +  +  +++  N  
Sbjct: 75  SVCDLLSRTERDKLMQTVAHVFD--GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFE 132
Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
            ++H+ + A PL+K  QNG   ++  +SS AG
Sbjct: 133 AAYHLSQIAYPLLKASQNG---NVIFLSSIAG 161

>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp Length = 235

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           ITG S GIG A+A   A++G  +++ ARS ++LE+    +    G+EV  +  DV   ++
Sbjct: 7   ITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAES 66
Query: 102 V----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           V    K  L+  G VDV+V N G+     LE  S +E   MI+VN++G +  +KA L  +
Sbjct: 67  VEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSL 126
Query: 158 KKRQNGGPASIA 169
           K+   GG A + 
Sbjct: 127 KR--TGGLALVT 136

>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           ITG S GIG A+A   A++G  +++ ARS ++LE+    +    G+EV  +  DV   ++
Sbjct: 29  ITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAES 88
Query: 102 V----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
           V    K  L+  G VDV+V N G+     LE  S +E   MI+VN++G +  +KA L  +
Sbjct: 89  VEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSL 148
Query: 158 KKRQNGGPASIA 169
           K+   GG A + 
Sbjct: 149 KR--TGGLALVT 158

>pdb|3SX2|A Chain A, Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Paratuberculosis In Complex With Nad Length = 278

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 25/169 (14%)
Query: 28  PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGA---------RVSILARSGEKLEEAK 78
           P+    P+  +  FITG + G G A A + A +GA         +++ +       EE  
Sbjct: 4   PRSSEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELA 63
Query: 79  QSIQLA--TGIEVATYSADVRDFD----AVKTALDEAGPVDVLVVNQGV--FVPGELEVQ 130
            +++L    G  +    ADVRD +    A++  LDE G +D++V N G+     G+    
Sbjct: 64  ATVKLVEDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGD---- 119
Query: 131 SLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             D    +IDVN+ G +H IK A+P + K+  GG  SI L+SS AG  G
Sbjct: 120 --DGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGG--SIVLISSSAGLAG 164

>pdb|3UWR|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Avium Strain 104 Length = 286

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 41  FITGGSSGIGLALAHQAAKEGARV---------SILARSGEKLEEAKQSIQLATGIE--V 89
           FI+G + G G + A + A+EGA +           LA      E+  ++  L   ++  +
Sbjct: 19  FISGAARGQGRSHAVRLAQEGADIIAIDICGPIENLAYPHSTPEDLAETADLVKDLDRRI 78
Query: 90  ATYSADVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEV-RLMIDVNII 144
            T   DVRDF+A+K+A+D    + G +D++V N GV   G    +  D V + MID+N+ 
Sbjct: 79  VTAQVDVRDFEALKSAVDSGVEQLGRLDIIVANAGVGTDGRKLHKIRDNVWQDMIDINLT 138
Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ 177
           G +H +KA +P +     GG  SI L SS  G+
Sbjct: 139 GVWHTVKAGVPHVLSGGRGG--SIVLTSSVGGR 169

>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From Pseudomonas Sp. Lb400 Length = 277

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 20/141 (14%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K   V ITGG+SG+G AL  +   EGA+V++L +S E+L E    ++   G  V     
Sbjct: 3   LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAE----LETDHGDNVLGIVG 58
Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVF--------VPGELEVQSLDEVRLMIDVN 142
           DVR  +  K A        G +D L+ N G++        +P E    + DEV     +N
Sbjct: 59  DVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEV---FHIN 115
Query: 143 IIGSFHMIKAALP-LIKKRQN 162
           + G  H +KA LP L+  R N
Sbjct: 116 VKGYIHAVKACLPALVASRGN 136

>pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADV 96
           +   +TG S GIG ++A Q A+EG  V++  A S EK E   + I+ A G++     A+V
Sbjct: 5   KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIK-AKGVDSFAIQANV 63
Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            D D VK  + E     G +DVLV N G+     L      E   +ID N+ G F+ I+ 
Sbjct: 64  ADADEVKAXIKEVVSQFGSLDVLVNNAGITRDNLLXRXKEQEWDDVIDTNLKGVFNCIQK 123
Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
           A P   ++++G   +I  +SS  G VG
Sbjct: 124 ATPQXLRQRSG---AIINLSSVVGAVG 147

>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADV 96
           +   +TG S GIG ++A Q A+EG  V++  A S EK E   + I+ A G++     A+V
Sbjct: 11  KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIK-AKGVDSFAIQANV 69
Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            D D VK  + E     G +DVLV N G+     L      E   +ID N+ G F+ I+ 
Sbjct: 70  ADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQK 129
Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
           A P + ++++G   +I  +SS  G VG
Sbjct: 130 ATPQMLRQRSG---AIINLSSVVGAVG 153

>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVR- 97
           V +TG S GIG A+A    K G +V +  ARS +  EE  + I+ A G +  T+  DV  
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE-AYGGQAITFGGDVSK 62
Query: 98  --DFDA-VKTALDEAGPVDVLVVNQGVFVPG---ELEVQSLDEVRLMIDVNIIGSFHMIK 151
             D +A +KTA+D  G +DV+V N G+        ++    DEV   ID+N+ G F   +
Sbjct: 63  EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEV---IDLNLTGVFLCTQ 119
Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           AA  ++ K++ G   +IA +    G +G
Sbjct: 120 AATKIMMKKRKGRIINIASVVGLIGNIG 147

>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2 Homolog) Mycobacterium Thermoresistibile Length = 285

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA----- 84
           P  + ++ + +FI+GGS GIGLA+A + A +GA V+++A+S E   +   +I  A     
Sbjct: 2   PGSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIE 61
Query: 85  -TGIEVATYSADVRDFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMI 139
             G +      D+RD DAV       +++ G +D+ V N      G +E   L    LM 
Sbjct: 62  EAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMN 121
Query: 140 DVNIIGSFHMIKAALPLIKKRQN 162
            + + G++ + ++ +P +K R N
Sbjct: 122 GIQVRGTYAVSQSCIPHMKGRDN 144

>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Thermoresistibile Length = 317

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSI--LARSGEKL-------EEAKQSIQLA--TGIEV 89
           FITG + G G   A + A++GA +    L R    L       EE K++++L    G  +
Sbjct: 50  FITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRI 109
Query: 90  ATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIG 145
               ADVRD  +++  +DEA    G +D+LV N G+   GE+   +  +   ++  N+IG
Sbjct: 110 IARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIG 169
Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           ++H  +A LP + +R  GG  S+  +SS  G  G
Sbjct: 170 AWHACRAVLPSMIERGQGG--SVIFVSSTVGLRG 201

>pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE-------VATYSA 94
           ITG S+GIG A A   A+EGA+V+I  R  E+LEE +Q I LA G+        VA  + 
Sbjct: 11  ITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI-LAAGVSEQNVNSVVADVTT 69
Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELE----VQSLDEVRLMIDVNIIGSFHMI 150
           D    + + T L + G +D+LV N G  +P         QS++     +++N+     + 
Sbjct: 70  DAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALT 129
Query: 151 KAALP 155
           K A+P
Sbjct: 130 KKAVP 134

>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 7/148 (4%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATG--IEVAT 91
           ++ R V +TGG+ GIG  +A   A+ GA V++  RS   ++     + QL +G  I V T
Sbjct: 8   LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQT 67
Query: 92  YSADVRDFDAVKT-ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
             +D    DA+   A++E G +DV+  N GVF    L   + +++  +  VN+ G+F+ +
Sbjct: 68  DVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAV 127
Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQV 178
           +A L  +    +G    + L SS  G +
Sbjct: 128 QACLDALIASGSG---RVVLTSSITGPI 152

>pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 28  PKPVRIPIKDRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           P+   +  +D  V  +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G
Sbjct: 16  PRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-G 74
Query: 87  IEVATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSL-DEVRL-MID 140
           +E    + DVR    ++      ++  GPVDVLV N G   PG      L DE+ L +++
Sbjct: 75  VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG--RPGGGATAELADELWLDVVE 132
Query: 141 VNIIGSFHMIKAAL 154
            N+ G F + K  L
Sbjct: 133 TNLTGVFRVTKQVL 146

>pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI---EVAT 91
             ++ V ITG S+GIG   A   A+EGA V+I  RS E+LEE +Q I L +G+   +V +
Sbjct: 4   FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII-LKSGVSEKQVNS 62
Query: 92  YSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEV----QSLDEVRLMIDVNI 143
             ADV   D     + + L + G +DVLV N G  +P         Q +D     + +N+
Sbjct: 63  VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 122
Query: 144 IGSFHMIKAALP 155
                M K   P
Sbjct: 123 QAVIEMTKKVKP 134

>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 28  PKPVRIPIKDRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           P+   +  +D  V  +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G
Sbjct: 12  PRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-G 70
Query: 87  IEVATYSADVR---DFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL-MIDV 141
           +E    + DVR   + +A V   ++  GPVDVLV N G  + G    +  DE+ L +++ 
Sbjct: 71  VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG-RLGGGATAELADELWLDVVET 129
Query: 142 NIIGSFHMIKAAL 154
           N+ G F + K  L
Sbjct: 130 NLTGVFRVTKQVL 142

>pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 28  PKPVRIPIKDRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           P+   +  +D  V  +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G
Sbjct: 16  PRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-G 74
Query: 87  IEVATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSL-DEVRL-MID 140
           +E    + DVR    ++      ++  GPVDVLV N G   PG      L DE+ L +++
Sbjct: 75  VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG--RPGGGATAELADELWLDVVE 132
Query: 141 VNIIGSFHMIKAAL 154
            N+ G F + K  L
Sbjct: 133 TNLTGVFRVTKQVL 146

>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 28  PKPVRIPIKDRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           P+   +  +D  V  +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G
Sbjct: 16  PRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-G 74
Query: 87  IEVATYSADVR---DFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL-MIDV 141
           +E    + DVR   + +A V   ++  GPVDVLV N G  + G    +  DE+ L +++ 
Sbjct: 75  VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG-RLGGGATAELADELWLDVVET 133
Query: 142 NIIGSFHMIKAAL 154
           N+ G F + K  L
Sbjct: 134 NLTGVFRVTKQVL 146

>pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 28  PKPVRIPIKDRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           P+   +  +D  V  +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G
Sbjct: 16  PRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-G 74
Query: 87  IEVATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSL-DEVRL-MID 140
           +E    + DVR    ++      ++  GPVDVLV N G   PG      L DE+ L +++
Sbjct: 75  VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG--RPGGGATAELADELWLDVVE 132
Query: 141 VNIIGSFHMIKAAL 154
            N+ G F + K  L
Sbjct: 133 TNLTGVFRVTKQVL 146

>pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 28  PKPVRIPIKDRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           P+   +  +D  V  +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G
Sbjct: 12  PRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-G 70
Query: 87  IEVATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSL-DEVRL-MID 140
           +E    + DVR    ++      ++  GPVDVLV N G   PG      L DE+ L +++
Sbjct: 71  VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG--RPGGGATAELADELWLDVVE 128
Query: 141 VNIIGSFHMIKAAL 154
            N+ G F + K  L
Sbjct: 129 TNLTGVFRVTKQVL 142

>pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 28  PKPVRIPIKDRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           P+   +  +D  V  +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G
Sbjct: 16  PRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-G 74
Query: 87  IEVATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSL-DEVRL-MID 140
           +E    + DVR    ++      ++  GPVDVLV N G   PG      L DE+ L +++
Sbjct: 75  VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG--RPGGGATAELADELWLDVVE 132
Query: 141 VNIIGSFHMIKAAL 154
            N+ G F + K  L
Sbjct: 133 TNLTGVFRVTKQVL 146

>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase Length = 234

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA-TYSADVR- 97
           V ITG S GIG A A     +G RV ++AR  ++L+       LA  +E A     DVR 
Sbjct: 8   VLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQ------ALAAELEGALPLPGDVRE 61
Query: 98  --DFDAVKTALDEA-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
             D+     A++EA G +  LV N GV V   +   +L+E RL++D N+ G+F  I+ A+
Sbjct: 62  EGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAV 121
Query: 155 PLIKKRQNGGPASIALMSSQAGQ 177
           P + +R  G   +I  + S AG+
Sbjct: 122 PALLRRGGG---TIVNVGSLAGK 141

>pdb|3TSC|A Chain A, Crystal Structure Of Short Chain Dehydrogenase Map_2410 From Mycobacterium Paratuberculosis Bound To Nad Length = 277

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARV----------SILARSGEKLEEAKQSIQL- 83
           ++ R  FITG + G G A A + A EGA +          S +       ++  ++++L 
Sbjct: 9   LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 84  -ATGIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLM 138
            A    +     D RDFD ++  +D+     G +D++V N GV  P   +  + ++ R +
Sbjct: 69  EAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV 128
Query: 139 IDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           +D+N+ G+++ + A  P I +   GG  SI L+SS AG
Sbjct: 129 MDINVTGTWNTVMAGAPRIIEGGRGG--SIILISSAAG 164

>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase Length = 262

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG    IGLA A + A+EG  +++L  + E LE+A+ S++   G+E  +Y  DV   
Sbjct: 10  CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR-EKGVEARSYVCDVTSE 68
Query: 100 DAVKTALD----EAGPVDVLVVN---QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           +AV   +D    + G +D L  N   QG F P  ++    D+   ++ +N+ G+FH++KA
Sbjct: 69  EAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAP--VQDYPSDDFARVLTINVTGAFHVLKA 126

>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 In Ligand-Free Form Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEV---- 89
           +KD+ V ITGGS+G+G A+A +  +E A+V I    + E+  +AK+ ++ A G  +    
Sbjct: 13  LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQG 72
Query: 90  -ATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
             T   DV +   V+TA+ E G +DV++ N GV  P      SLD    +ID N+ G+F
Sbjct: 73  DVTKEEDVVNL--VQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAF 129

>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 A258f Mutant In Complex With Nadh And D-Glucose Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEV---- 89
           +KD+ V ITGGS+G+G A+A +  +E A+V I    + E+  +AK+ ++ A G  +    
Sbjct: 13  LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQG 72
Query: 90  -ATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
             T   DV +   V+TA+ E G +DV++ N GV  P      SLD    +ID N+ G+F
Sbjct: 73  DVTKEEDVVNL--VQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAF 129

>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 G259a Mutant Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEV---- 89
           +KD+ V ITGGS+G+G A+A +  +E A+V I    + E+  +AK+ ++ A G  +    
Sbjct: 13  LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQG 72
Query: 90  -ATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
             T   DV +   V+TA+ E G +DV++ N GV  P      SLD    +ID N+ G+F
Sbjct: 73  DVTKEEDVVNL--VQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAF 129

>pdb|3CTM|A Chain A, Crystal Structure Of A Carbonyl Reductase From Candida Parapsilosis With Anti-Prelog Stereo-Specificity Length = 279

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 21/168 (12%)
Query: 28  PKPVRIPIKDRHVF-----------ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE 76
           P P + P   ++V            +TG S GIG A+A   A+ GA V+I   S    E+
Sbjct: 14  PLPTKAPTLSKNVLDLFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEK 73
Query: 77  AKQSIQLATGIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGV-FVPG-ELEVQ 130
           A+  +Q   G+    Y  ++ D  +V+  + +     G +DV V N GV +  G E++V 
Sbjct: 74  AEH-LQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVD 132
Query: 131 SLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
           + D    +I V++ G ++       + KK    G  S+ + SS +G++
Sbjct: 133 NYDSWNKIISVDLNGVYYCSHNIGKIFKKN---GKGSLIITSSISGKI 177

>pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus Length = 265

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           I   ++ + +TGG+ GIGLA     A  GA V+++ RS     E  + +    G++   Y
Sbjct: 10  ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAY 69
Query: 93  SADVRDFDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
             DV + D V   + +     GP+  L+ N GV V       + ++   + DVN+ G F+
Sbjct: 70  QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN 129
Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQV 178
             +A   L  ++Q  G  SI + SS + Q+
Sbjct: 130 TCRAVAKLWLQKQQKG--SIVVTSSMSSQI 157

>pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier Protein Reductase From Streptomyces Coelicolor A3(2) Length = 253

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 19/146 (13%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R V +TGG+ GIGLA+A   A  G +V+I  RSGE  E                   D+ 
Sbjct: 22  RSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE------------GFLAVKCDIT 69
Query: 98  DFDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D + V+ A  E     GPV+VL+ N GV     L   S ++   +++ N+ G+F ++K A
Sbjct: 70  DTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRA 129
Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
              + + + G    + L+SS  G +G
Sbjct: 130 NRAMLRAKKG---RVVLISSVVGLLG 152

>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3- Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-356. Length = 281

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 25/149 (16%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            ITGG+SG+G AL  +   EGARV++L +S E+L E    +++A G        DVR   
Sbjct: 9   LITGGASGLGRALVDRFVAEGARVAVLDKSAERLRE----LEVAHGGNAVGVVGDVRSLQ 64
Query: 101 AVKTALDEA----GPVDVLVVNQGVF--------VPGELEVQSLDEVRLMIDVNIIGSFH 148
             K A +      G +D L+ N G++        +P +    + D++     VN+ G  H
Sbjct: 65  DQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDI---FHVNVKGYIH 121
Query: 149 MIKAALP-LIKKRQNGGPASIALMSSQAG 176
            +KA LP L+  R      S+    S AG
Sbjct: 122 AVKACLPALVSSR-----GSVVFTISNAG 145

>pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR--- 97
            +TG +SGIGL +A +  KEG RV + AR  E L    + ++ A G+E    + DVR   
Sbjct: 10  LVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVP 68
Query: 98  DFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSL-DEVRL-MIDVNIIGSFHMIKAAL 154
           + +A V   ++  GPVDVLV N G   PG      L DE+ L +++ N+ G F + K  L
Sbjct: 69  EIEALVAAVVERYGPVDVLVNNAG--RPGGGATAELADELWLDVVETNLTGVFRVTKQVL 126

>pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad-acetone Length = 291

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATY 92
           +K ++V ITGG SGIG A++   AKEGA ++I  L   G+   E KQ ++   G++    
Sbjct: 45  LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDA-NETKQYVE-KEGVKCVLL 102
Query: 93  SADVRD----FDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSF 147
             D+ D     D V+  + + G +++LV N     P + LE  + +++     +NI   F
Sbjct: 103 PGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF 162
Query: 148 HMIKAALPLIKK 159
           H+ KAAL  +K+
Sbjct: 163 HVTKAALSHLKQ 174

>pdb|3KVO|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Hydroxysteroid Dehydrogenase Like 2 (Hsdl2) Length = 346

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 14/134 (10%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGE-------KLEEAKQSIQLATGIEVATY 92
           VFITG S GIG A+A +AAK+GA + I A++ +        +  A + I+ A G +    
Sbjct: 48  VFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIE-AVGGKALPC 106
Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVN-QGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
             DVRD   +  A+++A    G +D+LV N   + +   L+  +   + LM++VN  G++
Sbjct: 107 IVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPT-KRLDLMMNVNTRGTY 165
Query: 148 HMIKAALPLIKKRQ 161
              KA +P +KK +
Sbjct: 166 LASKACIPYLKKSK 179

>pdb|3UVE|A Chain A, Crystal Structure Of Carveol Dehydrogenase ((+)-Trans-Carveol Dehydrogenase) From Mycobacterium Avium Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 24/157 (15%)
Query: 41  FITGGSSGIGLALAHQAAKEGARV----------------SILARSGEKLEEAKQSIQLA 84
           F+TG + G G + A + A+EGA +                +I A + E L E    ++  
Sbjct: 15  FVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK-G 73
Query: 85  TGIEVATYSADVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMI 139
               + T   DVRD+DA+K A+D    + G +D++V N G+   G+ L+  S ++   MI
Sbjct: 74  HNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMI 133
Query: 140 DVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           D+N+ G +  +KA +P +     GG  SI L SS  G
Sbjct: 134 DINLAGVWKTVKAGVPHMIAGGRGG--SIILTSSVGG 168

>pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad+ Length = 291

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATY 92
           +K ++V ITGG SGIG A++   AKEGA ++I  L   G+   E KQ ++   G++    
Sbjct: 45  LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDA-NETKQYVE-KEGVKCVLL 102
Query: 93  SADVRD----FDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSF 147
             D+ D     D V+  + + G +++LV N     P + LE  + +++     +NI   F
Sbjct: 103 PGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF 162
Query: 148 HMIKAALPLIKK 159
           H+ KAAL  +K+
Sbjct: 163 HVTKAALSHLKQ 174

>pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From Streptococcus Suis Type 2 Length = 291

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           +  +K +   +TG S GIG A+A   AK GA + +     ++L +   +   A GI    
Sbjct: 29  QFSLKGKIALVTGASYGIGFAIASAYAKAGATI-VFNDINQELVDRGMAAYKAAGINAHG 87
Query: 92  YSADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           Y  DV D D ++  +     E G +D+LV N G+     +   +  + R +ID+++   F
Sbjct: 88  YVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPF 147
Query: 148 HMIKAALPLIKKRQNGGPASIALMSSQAGQ 177
            + KA +P + K+ +G   +I  M S+ G+
Sbjct: 148 IVSKAVIPSMIKKGHGKIINICSMMSELGR 177

>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida Tropicalis Peroxisomal Multifunctional Enzyme Type 2 Length = 604

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 14/157 (8%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS---------IQL 83
           +  KD+ V ITG   G+G   + + AK GA+V +    G    +   S         I  
Sbjct: 4   VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVK 63
Query: 84  ATGIEVATYSADVRDFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
             G+ VA Y+ +V D D  V+TA+   G V V++ N G+     ++  +  + +L+IDV+
Sbjct: 64  NGGVAVADYN-NVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVH 122
Query: 143 IIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + G+F + KAA P  +K++ G    I   SS AG  G
Sbjct: 123 LNGAFAVTKAAWPYFQKQKYG---RIVNTSSPAGLYG 156

>pdb|3GMD|A Chain A, Structure-Based Design Of 7-Azaindole-Pyrrolidines As Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I Length = 264

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  +K GA V + ARS E L++   S  L  G   A Y A
Sbjct: 7   LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKV-VSRCLELGAASAHYIA 65
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR +++VN +    M
Sbjct: 66  GTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVM 125
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AALP++K+  NG   SIA++SS AG+V
Sbjct: 126 STAALPMLKQ-SNG---SIAVISSLAGKV 150

>pdb|3EZL|A Chain A, Crystal Structure Of Acetyacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 256

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-----RSGEKLEEAKQSIQLATGIEV 89
           +  R  ++TGG  GIG ++  +  K+G RV         R  + LE+ K     A G + 
Sbjct: 11  MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK-----ALGFDF 65
Query: 90  ATYSADVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIG 145
                +V D+D+ K A D    E G +DVLV N G+         + ++ + +ID N+  
Sbjct: 66  YASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTS 125
Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            F++ K  +  + +R  G   +I+ ++ Q GQ G
Sbjct: 126 LFNVTKQVIDGMVERGWGRIINISSVNGQKGQFG 159

>pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 32  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 90
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 91  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 150
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 151 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 176

>pdb|4BB5|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 32  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 90
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 91  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 150
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 151 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 176

>pdb|2RBE|A Chain A, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1 Inhibitors Length = 275

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 15  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 73
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 74  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 133
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 134 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 159

>pdb|1XU7|A Chain A, Crystal Structure Of The Interface Open Conformation Of Tetrameric 11b-hsd1 Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 26  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 84
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 85  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 144
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 145 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 170

>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL-ATGIEVATYSADV 96
           R  F+TGG++G+G+ L  Q   +G +V+I     + +++A  +++   +G EV     DV
Sbjct: 9   RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDV 68
Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
              +  K A DE     GPV +L  N GV +   +E  S D+   ++ VN+ G  + +  
Sbjct: 69  ASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTT 128
Query: 153 ALPLIKKRQNGG 164
            +P + +R   G
Sbjct: 129 FVPRMVERVKAG 140

>pdb|3D5Q|A Chain A, Crystal Structure Of 11b-Hsd1 In Complex With Triazole Inhibitor Length = 272

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 12  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 70
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 71  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 130
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 131 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 156

>pdb|2ILT|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Sulfone Inhibitor Length = 275

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 22  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 80
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 81  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 140
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 141 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 166

>pdb|2IRW|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Ether Inhibitor Length = 264

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 7   LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 65
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 66  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 125
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 126 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 151

>pdb|3PDJ|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase 1 (11b-Hsd1) In Complex With 4,4-Disubstituted Cyclohexylbenzamide Inhibitor Length = 273

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 13  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 71
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 72  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 131
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             AALP++K+  NG   SI ++SS AG+V 
Sbjct: 132 TVAALPMLKQ-SNG---SIVVVSSLAGKVA 157

>pdb|4FGS|A Chain A, Crystal Structure Of A Probable Dehydrogenase Protein Length = 273

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSADVRDFD 100
           ITG +SGIGLA A +   EGARV I  R  + L+ A   I   A GI+    SA++ + D
Sbjct: 34  ITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQAD--SANLAELD 91
Query: 101 AVKTALD-EAGPVDVLVVNQ--GVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            +   +  EAG +DVL VN   G  +P GE+  +  D+     D N+ G    ++ ALPL
Sbjct: 92  RLYEKVKAEAGRIDVLFVNAGGGSXLPLGEVTEEQYDDT---FDRNVKGVLFTVQKALPL 148
Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           + +      +S+ L  S AG  G
Sbjct: 149 LAR-----GSSVVLTGSTAGSTG 166

>pdb|2BEL|A Chain A, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In Complex With Nadp And Carbenoxolone Length = 283

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 29  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 87
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 88  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 147
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AALP++K+  NG   SI ++SS AG+V
Sbjct: 148 TVAALPMLKQ-SNG---SIVVVSSLAGKV 172

>pdb|4HFR|A Chain A, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In Complex With An Orally Bioavailable Acidic Inhibitor Azd4017. Length = 272

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++   S  L  G   A Y A
Sbjct: 12  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV-VSHCLELGAASAHYIA 70
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 71  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 130
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AALP++K+  NG   SI ++SS AG+V
Sbjct: 131 TVAALPMLKQ-SNG---SIVVVSSLAGKV 155

>pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r, F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3- Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++      L  G   A Y A
Sbjct: 26  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHC-LELGAASAHYIA 84
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR  ++VN +    +
Sbjct: 85  GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 144
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AALP++K+  NG   SI ++SS AG+V
Sbjct: 145 TVAALPMLKQ-SNG---SIVVVSSLAGKV 169

>pdb|1Y5M|A Chain A, The Crystal Structure Of Murine 11b-Hydroxysteroid Dehydrogenase: An Important Therapeutic Target For Diabetes Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  +K GA V + ARS E L++   S  L  G   A Y A
Sbjct: 16  LQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKV-VSRCLELGAASAHYIA 74
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + +AG     +D+L++N        L    +  VR +++VN +    M
Sbjct: 75  GTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVM 134
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AALP++K+  NG   SIA++SS AG++
Sbjct: 135 STAALPMLKQ-SNG---SIAVISSLAGKM 159

>pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 6/127 (4%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           ITG SSGIGLA+A   AKEGA + ++AR  ++L EA +S++   G+ V   + DV   + 
Sbjct: 12  ITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEG 71
Query: 102 VKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDE-VRLMIDVNIIGSFHMIKAALPL 156
           V   ++      G  D+LV N G     E  +++ DE  +   +++++ +  + +  +P 
Sbjct: 72  VDAVVESVRSSFGGADILVNNAGT-GSNETIMEAADEKWQFYWELHVMAAVRLARGLVPG 130
Query: 157 IKKRQNG 163
           ++ R  G
Sbjct: 131 MRARGGG 137

>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 16/134 (11%)
Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P   R V +TGG+ GIGLA+A + A +G +V++  R       A + +    G+EV    
Sbjct: 12  PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG----SGAPKGL---FGVEV---- 60
Query: 94  ADVRDFDAVK---TALDE-AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D DAV    TA++E  GPV+VLV N G+     L   + ++   +I+ N+ G+F +
Sbjct: 61  -DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRV 119
Query: 150 IKAALPLIKKRQNG 163
            + A   +++ + G
Sbjct: 120 AQRASRSMQRNKFG 133

>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P   R V +TGG+ GIGLA+A + A +G +V++  R       A + +    G+EV    
Sbjct: 32  PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG----SGAPKGL---FGVEV---- 80
Query: 94  ADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D DAV  A     +  GPV+VLV N G+     L   + ++   +I+ N+ G+F +
Sbjct: 81  -DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRV 139
Query: 150 IKAALPLIKKRQNG 163
            + A   +++ + G
Sbjct: 140 AQRASRSMQRNKFG 153

>pdb|2Z1N|A Chain A, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1 Length = 260

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYS 93
           I+ +   +T GSSG+G A A + A+ GAR+ + +R+ EKLE A   I  L +G +V   +
Sbjct: 5   IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 94  ADVR---DFDAVKTALDEAGPVDVLVVNQGVFVPG---ELEVQSLDE 134
            D+R   D D +     + G  D+LV + G   PG   EL V+  DE
Sbjct: 65  GDIREPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDE 111

>pdb|3E03|A Chain A, Crystal Structure Of A Putative Dehydrogenase From Xanthomonas Campestris Length = 274

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ------LATGIE 88
           +  + +FITG S GIGLA+A +AA++GA V+I A+S     +   +I        A G +
Sbjct: 4   LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQ 63
Query: 89  VATYSADVRDFDAVKTA----LDEAGPVDVLVVN-QGVFVPGELEVQSLDEVRLMIDVNI 143
                 D+R+ D V+ A    +D  G +D+LV N   +++ G L+        L   VN 
Sbjct: 64  GLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPX-KRFDLXQQVNA 122
Query: 144 IGSFHMIKAALPLIKKRQN 162
            GSF   +A LP + +  N
Sbjct: 123 RGSFVCAQACLPHLLQAPN 141

>pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           + V ITG S+GIG + A   AKEGA+V+I  R+ ++LEE KQ I L  G+     +A V 
Sbjct: 27  KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI-LKAGVPAEKINAVVA 85
Query: 98  DF-------DAVKTALDEAGPVDVLVVNQG 120
           D        D + T L + G +D+LV N G
Sbjct: 86  DVTEASGQDDIINTTLAKFGKIDILVNNAG 115

>pdb|3TL3|A Chain A, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Ulcerans Length = 257

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV 89
           P  + I+D    +TGG+SG+GLA   +    GA+V +L   GE        +    G   
Sbjct: 2   PGSMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED-------VVADLGDRA 54
Query: 90  ATYSADVRDFDAVKTALDEAGPVDVL--VVN-----QGVFVPGELEVQSLDEVRLMIDVN 142
              +ADV D  AV +ALD A  +  L  VVN       + V     V SL   R ++D+N
Sbjct: 55  RFAAADVTDEAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDIN 114
Query: 143 IIGSFHMIKAALPLIKKRQNGGP-----------ASIALMSSQAGQ 177
           ++GSF++++ A   I K +  GP           AS+A    Q GQ
Sbjct: 115 LVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQ 160

>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi Length = 272

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD- 98
           V ITG   GIG   A++ AK  +++ +   +   LEE     +   G +V T+  D  + 
Sbjct: 34  VLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK-GLGAKVHTFVVDCSNR 92
Query: 99  ---FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
              + + K    E G V +LV N GV    +L      ++    +VN++  F   KA LP
Sbjct: 93  EDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLP 152
Query: 156 LIKKRQNGGPASIALMSSQAGQV 178
            + K  +G    I  ++S AG V
Sbjct: 153 AMTKNNHG---HIVTVASAAGHV 172

>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 16/134 (11%)
Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P   R V +TGG+ GIGLA+A + A +G +V++  R       A + +    G+E     
Sbjct: 12  PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG----SGAPKGL---FGVEC---- 60
Query: 94  ADVRDFDAVK---TALDE-AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D DAV    TA++E  GPV+VLV N G+     L   + ++   +I+ N+ G+F +
Sbjct: 61  -DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRV 119
Query: 150 IKAALPLIKKRQNG 163
            + A   +++ + G
Sbjct: 120 AQRASRSMQRNKFG 133

>pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With Pf-877423 Length = 263

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++      L  G   A Y A
Sbjct: 7   LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARC-LELGAASAHYIA 65
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + EAG     +D+L++N  ++         +D VR  ++VN      +
Sbjct: 66  GSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNFHSFVVL 125
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AA+P++ + Q     SIA++SS AG++
Sbjct: 126 SVAAMPMLMQSQ----GSIAVVSSVAGKI 150

>pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Length = 295

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++      L  G   A Y A
Sbjct: 30  LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARC-LELGAASAHYIA 88
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + EAG     +D+L++N  ++         +D VR  ++VN      +
Sbjct: 89  GSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNFHSFVVL 148
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AA+P++ + Q     SIA++SS AG++
Sbjct: 149 SVAAMPMLMQSQ----GSIAVVSSVAGKI 173

>pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of Pf-915275 Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++      L  G   A Y A
Sbjct: 9   LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARC-LELGAASAHYIA 67
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + EAG     +D+L++N  ++         +D VR  ++VN      +
Sbjct: 68  GSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNFHSFVVL 127
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AA+P++ + Q     SIA++SS AG++
Sbjct: 128 SVAAMPMLMQSQ----GSIAVVSSVAGKI 152

>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TG S GIG A+A +    GARV + AR  EKL   ++ I +A G E  +++ D+   DA
Sbjct: 34  VTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREI-VAAGGEAESHACDLSHSDA 92
Query: 102 VKT----ALDEAGPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           +       L   G  DVLV N GV +  G L      E   +I VN+   + +++A  P 
Sbjct: 93  IAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPA 152
Query: 157 IKKRQNGGPASIALMSSQAGQ 177
           +   + G    I  +SS AG+
Sbjct: 153 MIAAKRG---HIINISSLAGK 170

>pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278e Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++      L  G   A Y A
Sbjct: 9   LQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARC-LELGAASAHYIA 67
Query: 95  -DVRDFDAVKTALDEAGP----VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             + D    +  + EAG     +D+L++N  ++         +D VR  ++VN      +
Sbjct: 68  GSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTFFHGEIDNVRKSMEVNFHSFVVL 127
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQV 178
             AA+P++ + Q     SIA++SS AG++
Sbjct: 128 SVAAMPMLMQSQ----GSIAVVSSVAGKI 152

>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional Enzyme Type 2 From Drosophila Melanogaster Length = 613

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSIL----ARSGEKLEEAK-----QSIQLATGIE 88
           R   +TG  +G+G   A   A+ GA+V +       SG+   +         I+ A G  
Sbjct: 20  RVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEA 79
Query: 89  VATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           VA Y++ +     ++TA+   G VD+LV N G+     L   S  +  L+ DV++ GSF 
Sbjct: 80  VADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFK 139
Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             +AA P +KK+  G    I + SS +G  G
Sbjct: 140 CTQAAFPYMKKQNYG---RIIMTSSNSGIYG 167

>pdb|3PGX|A Chain A, Crystal Structure Of A Putative Carveol Dehydrogenase From Mycobacterium Paratuberculosis Bound To Nicotinamide Adenine Dinucleotide Length = 280

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 20/159 (12%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGA-------------RVSILARSGEKLEEAKQSI 81
           ++ R  FITG + G G + A + A EGA              V+    S E L+E  + +
Sbjct: 13  LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLV 72
Query: 82  QLATGIEVATYSADVRDFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL 137
           +   G +  T   DVRD  A++      +++ G +DV+V N GV   G +   + ++   
Sbjct: 73  E-DQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDT 131
Query: 138 MIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           +I VN+ G++  ++A +P + +  NGG  SI ++SS AG
Sbjct: 132 VIGVNLTGTWRTLRATVPAMIEAGNGG--SIVVVSSSAG 168

>pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron Length = 250

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG--IEVATYSADVRDF 99
           ITG S GIG  +A   A +G RV ++ARS + LE+    I  +     E      D+ D 
Sbjct: 12  ITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIXRSNKHVQEPIVLPLDITDC 71
Query: 100 DAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
               T + +     G VD+LV     F  G L  + +D  R + ++N+I  + ++K    
Sbjct: 72  TKADTEIKDIHQKYGAVDILVNAAAXFXDGSLS-EPVDNFRKIXEINVIAQYGILKTVTE 130
Query: 156 LIKKRQNGGPASIALMSSQAG 176
           + K ++NG   ++A  +++ G
Sbjct: 131 IXKVQKNGYIFNVASRAAKYG 151

>pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           ITG SSGIGLA+A   AKEGA + ++AR  ++L EA +S++   G+ V   + DV   + 
Sbjct: 12  ITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEG 71
Query: 102 VKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDE-VRLMIDVNIIGSFHMIKAALPL 156
           V   ++      G  D+LV N G     E  +++ DE  +   ++ ++ +  + +  +P 
Sbjct: 72  VDAVVESVRSSFGGADILVNNAGT-GSNETIMEAADEKWQFYWELLVMAAVRLARGLVPG 130
Query: 157 IKKRQNG 163
           ++ R  G
Sbjct: 131 MRARGGG 137

>pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical Analysis Of The Final Step In The Biosynthesis Of The Beta- Lactamase Inhibitor Clavulanic Acid Length = 247

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            ITG SSGIG A A   A EGA V+I AR  EKL      +  A G +V     DV D  
Sbjct: 11  LITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT-AAGAKVHVLELDVADRQ 69
Query: 101 ----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
               AV + ++  G +D+LV N G+ + G +E     +   MID N++G  +M +AALP 
Sbjct: 70  GVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPH 129
Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           + + +     ++  MSS AG+V 
Sbjct: 130 LLRSK----GTVVQMSSIAGRVN 148

>pdb|4FC6|A Chain A, Studies On Dcr Shed New Light On Peroxisomal Beta-Oxidation: Crystal Structure Of The Ternary Complex Of Pdcr Length = 277

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++D+  FITGG SGIG  +A    + G    I +RS  ++  A + +  ATG      S 
Sbjct: 25  LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 84
Query: 95  DVRDFDAVKTALDEA----GPVDVLV-VNQGVFV--PGELEVQSLDEVRLMIDVNIIGSF 147
           DVR   AV  A+D+A    G +D+L+    G F+   G L   S +  + ++D++  G+F
Sbjct: 85  DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGAL---SFNAFKTVMDIDTSGTF 141
Query: 148 HMIK 151
           ++ +
Sbjct: 142 NVSR 145

>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And (S)- Hydroxypropylethane Thiosulfonate Dehydrogenases Length = 250

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R   +TG SSG GLA+A +    G RV+ L  S E LEE  ++   A   +V    ADV 
Sbjct: 3   RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVA 62
Query: 98  DFDAVKTA----LDEAGPVDVLVVNQGVFVPGE---LEVQSLDEVRLMIDVNIIGSFHMI 150
           D   V  A    +++ G +DVLV N G+    E   L    +++   ++ VN+ G F   
Sbjct: 63  DEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGC 122
Query: 151 KAALP 155
           +A LP
Sbjct: 123 RAVLP 127

>pdb|3IMF|A Chain A, 1.99 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' Length = 257

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 11/124 (8%)
Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K++ V ITGGSSG G   A + AKEGARV I  R+ EKLEEAK  I+   G ++ T   D
Sbjct: 5   KEKVVIITGGSSGXGKGXATRFAKEGARVVITGRTKEKLEEAKLEIEQFPG-QILTVQXD 63
Query: 96  VRDFDAVKTALDE----AGPVDVLVVN-QGVFV-PGE-LEVQSLDEVRLMIDVNIIGSFH 148
           VR+ D ++  +++     G +D+L+ N  G F+ P E L V   + V   I++ + G+F+
Sbjct: 64  VRNTDDIQKXIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSV---INIVLNGTFY 120
Query: 149 MIKA 152
             +A
Sbjct: 121 CSQA 124

>pdb|2D1Y|A Chain A, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8 Length = 256

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 13/141 (9%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           + V +TGG+ GIG A+A   A+EGA V++     E  E       +A  I  A +  D+ 
Sbjct: 7   KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-------VAEAIGGAFFQVDLE 59
Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D       ++EA    G VDVLV N  +  PG      L E R +++VN+    H+  +A
Sbjct: 60  DERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHL--SA 117
Query: 154 LPLIKKRQNGGPASIALMSSQ 174
           L   + R+ GG A + + S Q
Sbjct: 118 LAAREMRKVGGGAIVNVASVQ 138

>pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase Length = 267

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYS 93
             DR V ITGG SG+G A A + A EGA++S++  S E LE +K ++ + A   EV T  
Sbjct: 11  FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 70
Query: 94  ADVRD---FDAVKTALDEA-GPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFH 148
           ADV D    +A  TA  E  G +D    N G+       E  +  E   ++ +N+ G F 
Sbjct: 71  ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL 130
Query: 149 MIKAALPLIKKRQNG 163
            ++  L +++++ +G
Sbjct: 131 GLEKVLKIMREQGSG 145

>pdb|3T7C|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Avium Bound To Nad Length = 299

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 41  FITGGSSGIGLALAHQAAKEGAR------------VSILARSGEKLEEAKQSIQLATGIE 88
           FITG + G G + A   A+EGA             V +   + + L E  + ++ A G  
Sbjct: 32  FITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE-ALGRR 90
Query: 89  VATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPG-ELEVQSLDEVRLMIDVNI 143
           +     DVRDFDA++ A+D+     G +D+++ N  +   G  L        R MIDVN+
Sbjct: 91  IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNL 150
Query: 144 IGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            G++   + A+P I   + GG  SI   SS  G  G
Sbjct: 151 NGAWITARVAIPHIMAGKRGG--SIVFTSSIGGLRG 184

>pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVAT 91
           I +  +  F+TGGS GIG A+A + A EGA V++    + E+ +     I+ A G  VA 
Sbjct: 27  ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVA- 85
Query: 92  YSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
             AD RD +A++ A+ E     G +D+LV + G++    LE  ++ +   +  VN    F
Sbjct: 86  IRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVXAVNFRAPF 145
Query: 148 HMIKAA 153
             I++A
Sbjct: 146 VAIRSA 151

>pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE--KLEEAKQSIQLATGIEVATY 92
           +K +   +TG +SGIGL +A   A +GA + +L   G+  ++E+ +  +    G++V   
Sbjct: 2   LKGKVAVVTGSTSGIGLGIATALAAQGADI-VLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD+   +AV+  +D A    G +D+LV N G+     +E    ++   ++ +N+   FH
Sbjct: 61  GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 120
Query: 149 MIKAALPLIKKRQNG 163
              AALP +KK+  G
Sbjct: 121 GTAAALPHMKKQGFG 135

>pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE--KLEEAKQSIQLATGIEVATY 92
           +K +   +TG +SGIGL +A   A +GA + +L   G+  ++E+ +  +    G++V   
Sbjct: 2   LKGKVAVVTGSTSGIGLGIATALAAQGADI-VLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD+   +AV+  +D A    G +D+LV N G+     +E    ++   ++ +N+   FH
Sbjct: 61  GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 120
Query: 149 MIKAALPLIKKRQNG 163
              AALP +KK+  G
Sbjct: 121 GTAAALPHMKKQGFG 135

>pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE--KLEEAKQSIQLATGIEVATY 92
           +K +   +TG +SGIGL +A   A +GA + +L   G+  ++E+ +  +    G++V   
Sbjct: 2   LKGKVAVVTGSTSGIGLGIATALAAQGADI-VLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD+   +AV+  +D A    G +D+LV N G+     +E    ++   ++ +N+   FH
Sbjct: 61  GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 120
Query: 149 MIKAALPLIKKRQNG 163
              AALP +KK+  G
Sbjct: 121 GTAAALPHMKKQGFG 135

>pdb|3V8B|A Chain A, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From Sinorhizobium Meliloti 1021 Length = 283

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 27  RPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
           +P PV          ITG  SGIG A A   A +G  V  L R+  ++EE    I  A G
Sbjct: 26  QPSPV--------ALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGG 77
Query: 87  IEVATYSADVRD----FDAVKTALDEAGPVDVLVVN---QGVFVP-GELEVQSLDEVRLM 138
             +A   ADV D     +AV+  + + G +D++V N    GV+ P  +L+    DE    
Sbjct: 78  QAIA-LEADVSDELQXRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDET--- 133
Query: 139 IDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           I VN+ G+F  +   +P +K+R   G  +I ++SS  G
Sbjct: 134 IAVNLRGTFLTLHLTVPYLKQR---GGGAIVVVSSING 168

>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol Dehydrogenase Length = 256

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            +TG   GIG A+A +  K+G  V+I   +    +     I  A G  VA    DV D D
Sbjct: 6   LVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAV-KVDVSDRD 64
Query: 101 AVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            V  A+++A    G  DV+V N GV     +E  + + V  + ++N+ G    I+AA+  
Sbjct: 65  QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEA 124
Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
            KK  +GG   I    SQAG VG
Sbjct: 125 FKKEGHGG--KIINACSQAGHVG 145

>pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+   ITGG++GIG A+A + A EGA ++I         EA+ +I+   G  V T   
Sbjct: 5   LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLV--PAPEAEAAIR-NLGRRVLTVKC 61
Query: 95  DVR---DFDAV-KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV    D +A  K  +   G  D+LV N G++     +  + ++ +   ++N+   F M 
Sbjct: 62  DVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMA 121
Query: 151 KAALPLIKKRQNGGPASIALMSS 173
           KA +P +K+  NG    I L S+
Sbjct: 122 KAFVPGMKR--NGWGRIINLTST 142

>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R V ITG +SG+G   A + A+ GA V +  R   K E A ++  +A  +EV     D++
Sbjct: 17  RTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAART--MAGQVEV--RELDLQ 72
Query: 98  DFDAVKTALDEAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           D  +V+   D     DVL+ N G+  VP  L V   +     I  N +G F +    LP 
Sbjct: 73  DLSSVRRFADGVSGADVLINNAGIMAVPYALTVDGFES---QIGTNHLGHFALTNLLLPR 129
Query: 157 IKKR 160
           +  R
Sbjct: 130 LTDR 133

>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE FROM BRUCELLA Melitensis (P43212) Length = 249

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  R   +TG + G+G A+A     +GA V +     EKL+E    +    G  +  + A
Sbjct: 8   LTGRKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELAAEL----GERIFVFPA 63
Query: 95  DVRDFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           ++ D +AVK     A +E G VD+LV N G+   G     S ++   ++ VN+   F++ 
Sbjct: 64  NLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTSVFNLT 123
Query: 151 KA-ALPLIKKRQ------------NGGPASIALMSSQAGQVG 179
           +    P++++R              G P      +S+AG +G
Sbjct: 124 RELTHPMMRRRNGRIINITSIVGVTGNPGQANYCASKAGLIG 165

>pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid Dehydrogenase Type 4 In Complex With Nad Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE---------KLEEAKQS 80
           P+R     R V +TG  +G+G A A   A+ GA V +    G+           ++  + 
Sbjct: 25  PLRFD--GRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEE 82
Query: 81  IQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMID 140
           I+   G  VA Y +       VKTALD  G +DV+V N G+         S ++  ++  
Sbjct: 83  IRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHR 142
Query: 141 VNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           V++ GSF + +AA   +KK++ G    I + SS +G  G
Sbjct: 143 VHLRGSFQVTRAAWEHMKKQKYG---RIIMTSSASGIYG 178

>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE From Brucella Melitensis Length = 246

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R   +TG + G+G A+A     +GA V +     EKL+E    +    G  +  + A++ 
Sbjct: 8   RKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELAAEL----GERIFVFPANLS 63
Query: 98  DFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA- 152
           D +AVK     A +E G VD+LV N G+   G     S ++   ++ VN+   F++ +  
Sbjct: 64  DREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTSVFNLTREL 123
Query: 153 ALPLIKKRQ------------NGGPASIALMSSQAGQVG 179
             P++++R              G P      +S+AG +G
Sbjct: 124 THPMMRRRNGRIINITSIVGVTGNPGQANYCASKAGLIG 162

>pdb|3GDF|A Chain A, Crystal Structure Of The Nadp-Dependent Mannitol Dehydrogenase From Cladosporium Herbarum. Length = 267

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 32  RIPIKDRHVFITG--GSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIE 88
           ++ +K + V +TG  G  G+G+  A   A+ GA V+I  A   +  EE  + ++   GI+
Sbjct: 15  QLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIK 74
Query: 89  VATYSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
              Y   V  +++    VK  + + G +D  + N G      +   S++    ++ V++ 
Sbjct: 75  AKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLN 134
Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
           G+FH  KA     K+R   G  S+ + +S +G +
Sbjct: 135 GTFHCAKAVGHHFKER---GTGSLVITASMSGHI 165

>pdb|3PXX|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Avium Bound To Nicotinamide Adenine Dinucleotide Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSIL------------ARSGEKLEEAKQSIQ 82
           ++D+ V +TGG+ G G + A + A+EGA + +               +   LEEA   ++
Sbjct: 8   VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 83  LATGIEVATYSADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPG-ELEVQSLDEVRL 137
             TG +  T   DVRD  AV      A+ E G +DV+V N G+   G  L VQ+  +   
Sbjct: 68  -KTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADA-- 124
Query: 138 MIDVNIIGSFHMIKAALPLI 157
             DV+ +G  + + AALP +
Sbjct: 125 -FDVDFVGVINTVHAALPYL 143

>pdb|3VTZ|A Chain A, Structure Of Thermoplasma Volcanium Aldohexose Dehydrogenase Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           D+   +TGGSSGIGLA+     + GA+V  ++     L+E K  + ++   ++   + + 
Sbjct: 14  DKVAIVTGGSSGIGLAVVDALVRYGAKVVSVS-----LDE-KSDVNVSDHFKIDVTNEEE 67
Query: 97  RDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
                 KT   + G +D+LV N G+     L +   +  R +IDVN+ GS+ M K  +P+
Sbjct: 68  VKEAVEKTT-KKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPV 126
Query: 157 IKKRQNGGPASIALMSSQA 175
           +    +G   +IA + S A
Sbjct: 127 MLAIGHGSIINIASVQSYA 145

>pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate Dehydrogenase From Sinorhizobium Meliloti Length = 281

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT---YSADVRD 98
           ITG +SGIGLA+A   AK GA + +L   G   +E +       G+   T   + AD   
Sbjct: 30  ITGSTSGIGLAIARTLAKAGANI-VLNGFGAP-DEIRTVTDEVAGLSSGTVLHHPADXTK 87
Query: 99  ----FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
                D      D  G  D+LV N GV    ++E   +++   +I VN+  SFH I+ A+
Sbjct: 88  PSEIADXXAXVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAI 147
Query: 155 PLIKKRQNG 163
           P  KK+  G
Sbjct: 148 PPXKKKGWG 156

>pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From Arabidopsis Thaliana Gene At1g07440 Length = 266

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA-----KQSIQLATG 86
           R  +K + V +TGG+ GIG A+  + A  GA +   AR+  +L E      K+  Q+   
Sbjct: 9   RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGS 68
Query: 87  IEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
           +  A+   +        +++   G +D+L+ N G          + ++    I  N+  +
Sbjct: 69  VCDASLRPEREKLMQTVSSMF-GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESA 127
Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
           +H+ + A PL+K     G  +I  MSS AG V
Sbjct: 128 YHLSQLAHPLLKAS---GCGNIIFMSSIAGVV 156

>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia Coli Length = 248

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG ++G G  +  +  ++G +V    R  E+L+E K   +L   + +A    DVR+ 
Sbjct: 3   VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD--ELGDNLYIA--QLDVRNR 58
Query: 100 DAVKTAL----DEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            A++  L     E   +D+LV N G+ +  E     S+++   MID N  G  +M +A L
Sbjct: 59  AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118
Query: 155 PLIKKRQNG 163
           P + +R +G
Sbjct: 119 PGMVERNHG 127

>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR FAMILY) MEMBER 4 (Dhrs4) Length = 261

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ----LATGI 87
           R P+ ++   +T  + GIG A+A + A++GA V + +R  + +++A  ++Q      TG 
Sbjct: 10  RDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGT 69
Query: 88  EVATYSADVRDFDAVKTALDEAGPVDVLVVNQGV--FVPGELEVQSLDEVR-LMIDVNII 144
                 A+ R+   V TA+   G +D+LV N  V  F    ++V   +EV    +D+N+ 
Sbjct: 70  VCHVGKAEDRE-RLVATAVKLHGGIDILVSNAAVNPFFGSIMDVT--EEVWDKTLDINVK 126
Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQA 175
               M KA +P ++KR  G   S+ ++SS A
Sbjct: 127 APALMTKAVVPEMEKRGGG---SVVIVSSIA 154

>pdb|3U9L|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From Sinorhizobium Meliloti Length = 324

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARV-----SILARSGEKLEEAKQSIQLATGIEVATYSA 94
           + ITG SSG G   A   A  G RV      I+ R+   +E A         +++ T   
Sbjct: 8   ILITGASSGFGRLTAEALAGAGHRVYASXRDIVGRNASNVE-AIAGFARDNDVDLRTLEL 66
Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV+   +V  A+D    E G +DVL+ N G  V G  E  + ++   + D+N++ +  + 
Sbjct: 67  DVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHXVFGPAEAFTPEQFAELYDINVLSTQRVN 126
Query: 151 KAALPLIKKRQNG 163
           +AALP  +++++G
Sbjct: 127 RAALPHXRRQKHG 139

>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase Length = 260

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ----LATGI 87
           R P++++   +T  + GIGLA+A + A++GA V + +R  E ++    ++Q      TG 
Sbjct: 9   RKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGT 68
Query: 88  EVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVR-LMIDVNIIGS 146
                 A+ R+   V  A++  G VD+LV N  V       + + +EV   ++ VN+  +
Sbjct: 69  VCHVGKAEDRE-RLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127
Query: 147 FHMIKAALPLIKKRQNGGPASIALMSS 173
             M KA +P ++KR   G  S+ ++SS
Sbjct: 128 VLMTKAVVPEMEKR---GGGSVLIVSS 151

>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  ++     +TGGS GIG  +  + A  GA V   +R+ ++L +     + + G +V  
Sbjct: 4   RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR-SKGFKVEA 62
Query: 92  YSADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
              D+      +  ++       G +++LV N G+ +  E +  ++++  L++ +N   +
Sbjct: 63  SVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAA 122
Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           +H+   A P +K  + G   ++  +SS +G
Sbjct: 123 YHLSVLAHPFLKASERG---NVVFISSVSG 149

>pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a Complexed With Nad+ Length = 261

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIE-VATYS 93
           V ITG S+G+G ++A + A E A+V +  RS E      LEE K+    A  ++   T  
Sbjct: 10  VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           +DV   + V++A+ E G +DV++ N G+  P      SL +   +ID N+ G+F
Sbjct: 70  SDV--INLVQSAIKEFGKLDVMINNAGLANPVSSHEMSLSDWNKVIDTNLTGAF 121

>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  ++     +TGGS GIG  +  + A  GA V   +R+ ++L +     + + G +V  
Sbjct: 3   RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR-SKGFKVEA 61
Query: 92  YSADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
              D+      +  ++       G +++LV N G+ +  E +  ++++  L++ +N   +
Sbjct: 62  SVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAA 121
Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAG 176
           +H+   A P +K  + G   ++  +SS +G
Sbjct: 122 YHLSVLAHPFLKASERG---NVVFISSVSG 148

>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With Nad+ Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIE-VATYS 93
           V ITG S+G+G ++A + A E A+V +  RS E      LEE K+    A  ++   T  
Sbjct: 10  VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           +DV   + V++A+ E G +DV++ N G+  P      SL +   +ID N+ G+F
Sbjct: 70  SDV--INLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF 121

>pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations (Q252l And E170k) Of Glucose Dehydrogenase From Bacillus Megaterium Iwg3 For The Stabilization Of Oligomeric State Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIE-VATYS 93
           V ITG S+G+G ++A + A E A+V +  RS E      LEE K+    A  ++   T  
Sbjct: 10  VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           +DV   + V++A+ E G +DV++ N G+  P      SL +   +ID N+ G+F
Sbjct: 70  SDV--INLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF 121

>pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l Complexed With Nad+ Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIE-VATYS 93
           V ITG S+G+G ++A + A E A+V +  RS E      LEE K+    A  ++   T  
Sbjct: 10  VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           +DV   + V++A+ E G +DV++ N G+  P      SL +   +ID N+ G+F
Sbjct: 70  SDV--INLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF 121

>pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           +P+ DR   +TG S GIG A+A + A  GA+V++   S     +   +   A G E    
Sbjct: 24  LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAV 83
Query: 93  SADVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            ADV     V+      ++  G +DVLV N G+     L     D+ + ++D+N+ G F 
Sbjct: 84  KADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFL 143
Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             +AA  ++ K+++G   +IA +  + G  G
Sbjct: 144 CSRAAAKIMLKQRSGRIINIASVVGEMGNPG 174

>pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATY 92
           +K +   +TG +SGIGL +A   A+ GA + +         L E  +      G++   +
Sbjct: 2   LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARH-----GVKAVHH 56
Query: 93  SADVRDFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD+ D   ++     A  E G VD+LV N G+     +E   L+    +I +N+   FH
Sbjct: 57  PADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFH 116
Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             + ALP ++ R  G   +IA +    G  G
Sbjct: 117 GTRLALPGMRARNWGRIINIASVHGLVGSTG 147

>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 23/163 (14%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           I +  +   ITG SSGIG A+A    K G++V I   + EKL+    +++    IEV   
Sbjct: 10  IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEV--- 66
Query: 93  SADVRDFDAVKTALDEAGPVDVLVVNQGV---FVPGELEVQSLDEVRLMIDVNIIGSFHM 149
             ++ + +     + +   +D+LV N G+    +   ++ Q  D+V   ID+N+  +F +
Sbjct: 67  -CNLANKEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKV---IDINLKANFIL 122
Query: 150 IKAAL-PLIKKRQN------------GGPASIALMSSQAGQVG 179
            + A+  +I+KR              G P      +S+AG +G
Sbjct: 123 NREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIG 165

>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYS 93
           +K +   +TG S GIG A+A   AK+GA V +  A + +K  E    I+   G +     
Sbjct: 2   LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIK-KLGSDAIAVR 60
Query: 94  ADVRD----FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           ADV +     + VK  +D  G VD+LV N GV     L     +E   +I+ N+ G F  
Sbjct: 61  ADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLC 120
Query: 150 IKAALPLIKKRQNGGPASIA 169
            KA    + ++++G   +IA
Sbjct: 121 TKAVSRFMMRQRHGRIVNIA 140

>pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  +   ITG S+GIG  +A   A+ GA+V++ AR  + L+     I    G +      
Sbjct: 30  LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA-GVGGKALPIRC 88
Query: 95  DVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV   D V+  LD    E G +D+ V N G+     +    L+E + + D N+ G F   
Sbjct: 89  DVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTA 148
Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQV 178
           +AA   +  +  GG  +I   +S +G +
Sbjct: 149 QAAARAMVDQGLGG--TIITTASMSGHI 174

>pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Helicobacter Pylori 26695 Complexed With Nad+ Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 16/152 (10%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           ++V ITG S GIG  +A   A  G +V I  RS  ++ +A     L   +E   Y A V 
Sbjct: 30  KNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADA-----LKNELEEKGYKAAVI 84
Query: 98  DFD---------AVKTALDEAGPVDVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSF 147
            FD         A++T +   G +  LV N GV V  +L ++   ++   +ID N+  +F
Sbjct: 85  KFDAASESDFIEAIQTIVQSDGGLSYLVNNAGV-VRDKLAIKMKTEDFHHVIDNNLTSAF 143
Query: 148 HMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              + AL ++ K + G   ++A +  + G +G
Sbjct: 144 IGCREALKVMSKSRFGSVVNVASIIGERGNMG 175

>pdb|3TOX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase In Complex With Nad(P) From Sinorhizobium Meliloti 1021 Length = 280

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--------- 85
           ++ +   +TG SSGIG A A   A+EGA+V + AR+G  L E    I             
Sbjct: 6   LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGD 65
Query: 86  ----GIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDV 141
                +  A     VR F  + TA + AG +  +         GE+   S++  R  +D 
Sbjct: 66  VGDEALHEALVELAVRRFGGLDTAFNNAGALGAM---------GEISSLSVEGWRETLDT 116
Query: 142 NIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV 178
           N+  +F   K  +P I     G   S+   SS  G  
Sbjct: 117 NLTSAFLAAKYQVPAIAALGGG---SLTFTSSFVGHT 150

>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus Thuringiensis Length = 264

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSG----EKLEEAKQSIQLATGIEVATYS 93
           RH  IT G+ G+G  +  +   +G  V++   S     E ++E  + ++       A  +
Sbjct: 8   RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVT 67
Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQG--VFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
                   V+ A+   G +D L+ N G  VF   +L     DE   MI  N+   FH++K
Sbjct: 68  KKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLK 127
Query: 152 AALPLIKKRQNG 163
             +P+++K+  G
Sbjct: 128 LVVPVMRKQNFG 139

>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL----ATGIEVATYSADVR 97
           +TGG++GIG A+  +  + G+ V I +R  E+L+ A   +Q          V     ++R
Sbjct: 23  VTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR 82
Query: 98  D----FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           +     + VK+ LD  G ++ LV N G       E  S      +++ N+ G+F+M KA 
Sbjct: 83  NEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAV 142
Query: 154 LPLIKKRQNGGPASIALMSSQAG 176
                K   G   +I ++ ++AG
Sbjct: 143 YSSWMKEHGGSIVNI-IVPTKAG 164

>pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat Peroxisomal Multifunctional Enzyme Type 2 Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI---------LARSGEKLEEAKQS 80
           P+R     R V +TG   G+G A A   A+ GA V +         + +     ++  + 
Sbjct: 4   PLRF--DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE 61
Query: 81  IQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMID 140
           I+   G  VA Y +       VKTALD  G +DV+V N G+         S ++  ++  
Sbjct: 62  IRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQR 121
Query: 141 VNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           V++ GSF + +AA    KK+  G     A  S   G  G
Sbjct: 122 VHLRGSFQVTRAAWDHXKKQNYGRIIXTASASGIYGNFG 160

>pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta- Hydroxysteroid Dehydrogenase And Possible Roles Of The Residues Conserved In Short-Chain Dehydrogenases Length = 253

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 19/153 (12%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-------ARSGEKLEEAKQSIQLATGI 87
           +  + V ITGG+ G+G   A QA   GARV +        A +  +L +A +   L   I
Sbjct: 3   LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTI 62
Query: 88  EVATYSADVRDFD-AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
           E         D+   V  A +E G VD LV N G+     LE +S++  R ++++N+ G 
Sbjct: 63  E--------EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGV 114
Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           F  +K  +P +K   + G  SI  +SS AG +G
Sbjct: 115 FIGMKTVIPAMK---DAGGGSIVNISSAAGLMG 144

>pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid Dehydrogenase By A Licorice-Derived Steroidal Inhibitor Length = 254

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 19/153 (12%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-------ARSGEKLEEAKQSIQLATGI 87
           +  + V ITGG+ G+G   A QA   GARV +        A +  +L +A +   L   I
Sbjct: 3   LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTI 62
Query: 88  EVATYSADVRDFD-AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
           E         D+   V  A +E G VD LV N G+     LE +S++  R ++++N+ G 
Sbjct: 63  E--------EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGV 114
Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           F  +K  +P +K   + G  SI  +SS AG +G
Sbjct: 115 FIGMKTVIPAMK---DAGGGSIVNISSAAGLMG 144

>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181 Length = 260

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           ++ + +R   +TGG+  IGLA     A+ GARV I         +A + +++  G +V++
Sbjct: 8   KLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-EGHDVSS 66
Query: 92  YSADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLM--IDVNIIG 145
              DV + ++V+ A+    ++ G VD+LV   G+ +  E++ + + + + +  +D+N+ G
Sbjct: 67  VVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICIS-EVKAEDMTDGQWLKQVDINLNG 125
Query: 146 SFHMIKAALPLIKKRQNGGPASIALMS 172
            F   +A   ++ +++ G   +I  MS
Sbjct: 126 MFRSCQAVGRIMLEQKQGVIVAIGSMS 152

>pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 31  VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA 90
           + I ++ +   +TG + GIG A+A + A  G+ V I   SGE+ +   + I    G++  
Sbjct: 1   MEIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAH 60
Query: 91  TYSADVRDFDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
               ++   +++  A +E       +D+LV N G+         SL +   ++ VN+ G+
Sbjct: 61  GVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGT 120
Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           F + + +L  + K++ G   +I+ +    G VG
Sbjct: 121 FLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVG 153

>pdb|3R3S|A Chain A, Structure Of The Ygha Oxidoreductase From Salmonella Enterica Length = 294

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL--ATGIEVATY 92
           +KDR   +TGG SGIG A A   A+EGA V+I     E+ E+A+Q   L    G +    
Sbjct: 47  LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEE-EDAQQVKALIEECGRKAVLL 105
Query: 93  SADVRDFDAVKTALDEA----GPVDV--LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
             D+ D    ++ + +A    G +D+  LV  +   +P E++  + ++ +    VN+   
Sbjct: 106 PGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIP-EIKDLTSEQFQQTFAVNVFAL 164
Query: 147 FHMIKAALPLIKK 159
           F + + A+PL+ K
Sbjct: 165 FWITQEAIPLLPK 177

>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 7/150 (4%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   +TG S G+G A+A +    GA + +         +A      A GI V     
Sbjct: 3   LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKG 62
Query: 95  DVRD----FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV++     + VKTA+D  G +D+LV N G+     +   S  +   +++ N+  ++   
Sbjct: 63  DVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCT 122
Query: 151 KAALPLIKKRQNG---GPASIALMSSQAGQ 177
           KA   ++ K+++G      SIA +   AGQ
Sbjct: 123 KAVSKIMLKQKSGKIINITSIAGIIGNAGQ 152

>pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           +FITG +SG G A A + A+ G  + +  R  E+L+      +L+    V   + DVRD 
Sbjct: 24  LFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAG--ELSAKTRVLPLTLDVRDR 81
Query: 100 DAVKTALD----EAGPVDVLVVNQGVFVPGELEVQS--LDEVRLMIDVNIIGSFHMIKAA 153
            A   A+D    E   +  L+ N G+ + G    QS  LD+    +D NI G  +  +  
Sbjct: 82  AAXSAAVDNLPEEFATLRGLINNAGLAL-GTDPAQSCDLDDWDTXVDTNIKGLLYSTRLL 140
Query: 154 LPLIKKRQNGGPASIALMSSQAGQ 177
           LP +    +G  ASI  + S AG+
Sbjct: 141 LPRLIA--HGAGASIVNLGSVAGK 162

>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   ITG + GIG A A    +EGARV+I     +   EA ++     G      + DV 
Sbjct: 6   KTALITGSARGIGRAFAEAYVREGARVAI----ADINLEAARATAAEIGPAACAIALDVT 61
Query: 98  DFDAVKTA----LDEAGPVDVLVVNQGVFVPG---ELEVQSLDEVRLMIDVNIIGSFHMI 150
           D  ++       LD  G +D+LV N  +F      E+  +S D    +  +N+ G+  M+
Sbjct: 62  DQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDR---LFAINVSGTLFMM 118
Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A    +     GG   I  M+SQAG+ G
Sbjct: 119 QAVARAMIAGGRGG--KIINMASQAGRRG 145

>pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADV-- 96
           V ITGGS GIG A A  AA++G  V++  A +    +E  + I+ A G  +A   ADV  
Sbjct: 28  VLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAV-QADVAK 86
Query: 97  -RDFDAVKTALD-EAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
            R+  A    +D + G +  LV N GV      ++  +L+ ++   ++N+ GSF   + A
Sbjct: 87  EREVLAXFETVDAQLGRLSALVNNAGVVDQTTRVDGITLERLQRXFEINVFGSFLCAREA 146
Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
           +     R  G   SI  +SS A ++G
Sbjct: 147 VKRXSTRYGGSGGSIVNVSSAAARLG 172

>pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  R   +TGGS GIG  +A    + GARV I AR  E    A  + +L+   +     A
Sbjct: 27  LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEAC--ADTATRLSAYGDCQAIPA 84
Query: 95  DVRDFDAVK---TALDE-AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+      +    AL E +  +D+LV N G      LE   +     ++ +N+   F  I
Sbjct: 85  DLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCI 144
Query: 151 KAALPLIKKRQNG-GPASIALMSSQAG 176
           +  LPL+++  +   PA +  + S AG
Sbjct: 145 QQLLPLLRRSASAENPARVINIGSVAG 171

>pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            +TG  +GIGLA+A + A EG  V      G+  + A   I    G   A    DV D  
Sbjct: 33  IVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCGAAACRVDVSDEQ 88
Query: 101 AVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            +   +D      G VD LV N GV     L   ++++   +I +N+ G++   K A P 
Sbjct: 89  QIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPR 148
Query: 157 IKKRQNGGPASIALMSSQAGQV 178
           + +R  G   +I  +SS AGQV
Sbjct: 149 MIERGGG---AIVNLSSLAGQV 167

>pdb|1ULS|A Chain A, Crystal Structure Of Tt0140 From Thermus Thermophilus Hb8 Length = 245

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +KD+ V ITG + GIG A     AKEGAR+         L EA +++     +       
Sbjct: 3   LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVV------X 56
Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D  +V+    EA    G +D +V   G+          L++  L++ VN+ GSF + 
Sbjct: 57  DVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKXPLEDWELVLRVNLTGSFLVA 116
Query: 151 KAALPLIKKRQNGGPASIALMSSQ 174
           KAA    +++    P SI L +S+
Sbjct: 117 KAASEAXREKN---PGSIVLTASR 137

>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain DehydrogenaseREDUCTASE From Mycobacterium Abscessus Bound To Nad Length = 281

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 23/153 (15%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARS------GEKLEEAK---QSIQLA--TG 86
           +   ITGG+ G+G + A   A+ GA ++I  R       G  L  A    +++ L   TG
Sbjct: 11  KTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG 70
Query: 87  IEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGV----FVPGELEVQSLDEVRLM 138
               +   DV+D  A+++ + EA    G +D+ + N G+     +P E+E    DEV   
Sbjct: 71  RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLP-EVESAQWDEV--- 126
Query: 139 IDVNIIGSFHMIKAALPLIKKRQNGGPASIALM 171
           I  N+ G+F+ I A  P + KR  G   +++ M
Sbjct: 127 IGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSM 159

>pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42 Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV--- 96
           V +TGGS GIG A+   AA++G RV +   +  +  +A  +    +G E      DV   
Sbjct: 29  VLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNA 88
Query: 97  RDFDAVKTALD-EAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            D  A  +A+D + G +D LV N G+   P  ++  S++ +   + VN+ GS      A+
Sbjct: 89  ADIAAXFSAVDRQFGRLDGLVNNAGIVDYPQRVDEXSVERIERXLRVNVTGSILCAAEAV 148
Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
               +  +G   +I  +SS A  +G
Sbjct: 149 RRXSRLYSGQGGAIVNVSSXAAILG 173

>pdb|3UCX|A Chain A, The Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 264

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           + D+ V I+G    +G  LA + A++GA + + AR+ E+LE+  + +   TG    +   
Sbjct: 9   LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT-DTGRRALSVGT 67
Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPG--ELEVQSLDEVRLMIDVNIIGSFH 148
           D+ D   V   +DE     G VDV V+N    VP        + + +R  I++ + G+  
Sbjct: 68  DITDDAQVAHLVDETMKAYGRVDV-VINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR 126
Query: 149 MIKAALPLIKKRQ 161
           +I+   P +++ +
Sbjct: 127 LIQGFTPALEESK 139

>pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           F+TG SSGIGLA+A   A  G  V   AR  + +  A   ++ A G +V   S DV   D
Sbjct: 28  FVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR-AAGHDVDGSSCDVTSTD 86
Query: 101 AVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL--MIDVNIIGSFHMIKAAL 154
            V      A++  GP+ +LV + G    G  E   LD+     ++D N+ G F + +  L
Sbjct: 87  EVHAAVAAAVERFGPIGILVNSAG--RNGGGETADLDDALWADVLDTNLTGVFRVTREVL 144
Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
                R+  G   I  ++S  G+ G
Sbjct: 145 RAGGMRE-AGWGRIVNIASTGGKQG 168

>pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ++ +   +TG S GIG A+A   A+ GA+V   A S    E   Q+I    G      
Sbjct: 8   MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLGDNGKGM 63
Query: 93  SADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           + +V + ++++  L    DE G VD+LV N G+     L     +E   +++ N+   F 
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 149 MIKAALP-LIKKRQ 161
           + KA L  ++KKRQ
Sbjct: 124 LSKAVLRGMMKKRQ 137

>pdb|3LF1|A Chain A, Apo Structure Of The Short Chain Oxidoreductase Q9hya2 From Pseudomonas Aeruginosa Pao1 Containing An Atypical Catalytic Center Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSADVRDFD 100
           +TGGSSGIGLA      + GA V+  AR GE+L  A+ ++ Q   G  +     DV D  
Sbjct: 13  VTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDAL 72
Query: 101 AVKTALDEA-----GPVDVLVVNQG---VFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            V+ A  EA     G   +LV N G   V    E   ++  E    + +      H ++A
Sbjct: 73  QVR-AFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSE---ELQLKFFSVIHPVRA 128
Query: 153 ALPLIKKRQNGGPASI-ALMSSQ 174
            LP ++ R +     + +L++SQ
Sbjct: 129 FLPQLESRADAAIVCVNSLLASQ 151

>pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ++ +   +TG S GIG A+A   A+ GA+V   A S    E   Q+I    G      
Sbjct: 8   MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLGDNGKGM 63
Query: 93  SADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           + +V + ++++  L    DE G VD+LV N G+     L     +E   +++ N+   F 
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 149 MIKAALP-LIKKRQ 161
           + KA L  ++KKRQ
Sbjct: 124 LSKAVLRGMMKKRQ 137

>pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ++ +   +TG S GIG A+A   A+ GA+V   A S    E   Q+I    G      
Sbjct: 8   MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLGDNGKGM 63
Query: 93  SADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           + +V + ++++  L    DE G VD+LV N G+     L     +E   +++ N+   F 
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 149 MIKAAL-PLIKKRQ 161
           + KA L  ++KKRQ
Sbjct: 124 LSKAVLRGMMKKRQ 137

>pdb|3T4X|A Chain A, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE FROM Bacillus Anthracis Str. Ames Ancestor Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI--QLATGIEVATY 92
           +K +   +TG ++GIG A+A     EGA V I  R  E + E  + I  Q    I +   
Sbjct: 8   LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAI-LQPV 66
Query: 93  SADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIK 151
            AD+      +  +++   VD+L+ N G+F P E  ++   D  +L  +VNI     + +
Sbjct: 67  VADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLF-EVNIXSGVRLTR 125
Query: 152 AALPLIKKRQNG 163
           + L    +R+ G
Sbjct: 126 SYLKKXIERKEG 137

>pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            ++GG+ G+G +       EGA+V      G+ L+E  +++             DV    
Sbjct: 11  LVSGGARGMGASHVRAMVAEGAKVVF----GDILDEEGKAMAAELADAARYVHLDVTQPA 66
Query: 101 AVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
             K A+D A    G + VLV N G+   G +E  +L E + ++DVN+ G F  I+A +  
Sbjct: 67  QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKP 126
Query: 157 IKKRQNGGPASIALMSSQAGQV 178
           +K+   G   +I+ +   AG V
Sbjct: 127 MKEAGRGSIINISSIEGLAGTV 148

>pdb|4IMR|A Chain A, Crystal Structure Of 3-oxoacyl (acyl-carrier-protein) Reductase (target Efi-506442) From Agrobacterium Tumefaciens C58 With Nadp Bound Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ R   +TG S GIG A+A   A  GA V +           +Q I +A+G      + 
Sbjct: 31  LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRI-IASGGTAQELAG 89
Query: 95  DVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           D+ +  A    ++ A    PVD+LV+N    +   L   + +++   + VN+  +  M++
Sbjct: 90  DLSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQ 149
Query: 152 AALPLIKKRQNGGPASI 168
           +ALP +  R+ G   SI
Sbjct: 150 SALPKMVARKWGRVVSI 166

>pdb|1O5I|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Reductase (Tm1169) From Thermotoga Maritima At 2.50 A Resolution Length = 249

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           I+D+ V +   S GIG A+A   ++EGA V+I AR+ E L+ +     +           
Sbjct: 17  IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVV----------C 66
Query: 95  DVR-DFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D+R D D +    ++   VD+LV+N G    G  +  + ++ +  ID   +    +++  
Sbjct: 67  DLRKDLDLL---FEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNY 123
Query: 154 LPLIKKRQNGGPASIALMS 172
           LP +K++  G   +I   S
Sbjct: 124 LPAMKEKGWGRIVAITSFS 142

>pdb|3N74|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reduc Brucella Melitensis Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV 89
           P  + ++ +   ITG  SG G  +A + AK GA+V I+ R     E     I  A     
Sbjct: 2   PGSMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVA 61
Query: 90  ATYSADVRDFDAVKTALDEAGPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFH 148
           A  S +     AV+ AL + G VD+LV N G+   P   E+   +E   ++ VN+ G + 
Sbjct: 62  ADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121
Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAG 176
           M    +P  K+    G   + L  +  G
Sbjct: 122 MTSKLIPHFKENGAKGQECVILNVASTG 149

>pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            +TG S GIG A+A   A  GA+V   A S    E   Q+I    G        +V D  
Sbjct: 9   LVTGASRGIGRAIAETLAARGAKVIGTATS----ENGAQAISDYLGANGKGLMLNVTDPA 64
Query: 101 AVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL-P 155
           ++++ L+    E G VD+LV N G+     L     +E   +I+ N+   F + KA +  
Sbjct: 65  SIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRA 124
Query: 156 LIKKRQN-----GGPASIALMSSQAGQVG 179
           ++KKR       GG A+ A  +++AG +G
Sbjct: 125 MMKKRHGRIITIGGQANYA--AAKAGLIG 151

>pdb|1U7T|A Chain A, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR Length = 261

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           ITGG+SG+GLA A +   +GA   +  L  SG + +  K       G       ADV   
Sbjct: 15  ITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK------LGNNCVFAPADVTSE 68
Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGEL------EVQSLDEVRLMIDVNIIGSFHM 149
             V+TAL  A    G VDV V   G+ V  +       +  +L++ + ++DVN++G+F++
Sbjct: 69  KDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNV 128
Query: 150 IK 151
           I+
Sbjct: 129 IR 130

>pdb|1SO8|A Chain A, Abeta-bound Human Abad Structure [also Known As 3-hydroxyacyl-coa Dehydrogenase Type Ii (type Ii Hadh), Endoplasmic Reticulum- Associated Amyloid Beta-peptide Binding Protein (erab)] Length = 261

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           ITGG+SG+GLA A +   +GA   +  L  SG + +  K       G       ADV   
Sbjct: 15  ITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK------LGNNCVFAPADVTSE 68
Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGEL------EVQSLDEVRLMIDVNIIGSFHM 149
             V+TAL  A    G VDV V   G+ V  +       +  +L++ + ++DVN++G+F++
Sbjct: 69  KDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNV 128
Query: 150 IK 151
           I+
Sbjct: 129 IR 130

>pdb|2O23|A Chain A, The Structure Of Wild-Type Human Hadh2 (17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To Nad+ At 1.2 A Length = 265

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           ITGG+SG+GLA A +   +GA   +  L  SG + +  K       G       ADV   
Sbjct: 17  ITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK------LGNNCVFAPADVTSE 70
Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGEL------EVQSLDEVRLMIDVNIIGSFHM 149
             V+TAL  A    G VDV V   G+ V  +       +  +L++ + ++DVN++G+F++
Sbjct: 71  KDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNV 130
Query: 150 IK 151
           I+
Sbjct: 131 IR 132

>pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Rhizobium Etli Cfn 42 Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK--LEEAKQSIQLATGIEVATY 92
           +  R   +TGG SGIG A A   AK GA V ++A   E   +  A +    A G+ V   
Sbjct: 25  LNQRVCIVTGGGSGIGRATAELFAKNGAYV-VVADVNEDAAVRVANEIGSKAFGVRVDVS 83
Query: 93  SADVRDFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           SA  +D ++ V+    + G VDVLV N G    G +     +    +  VN+ G F   K
Sbjct: 84  SA--KDAESXVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIXSVNVKGIFLCSK 141
Query: 152 AALPLIKKRQNGGPASIALMSSQA 175
             +P+   R+NGG + I   S  A
Sbjct: 142 YVIPV--XRRNGGGSIINTTSYTA 163

>pdb|1X1E|A Chain A, Crystal Structure Of Tt0495 Protein From Thermus Thermophilus Hb8 Length = 239

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           +R   +TGGS GIG A+A      G RV+I +R+ E+  ++  ++ L T +E      D 
Sbjct: 2   ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLE----KDDP 57
Query: 97  RDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           +    VK AL+  G + VLV    V V       S +E R ++ +++  +F + +AA P
Sbjct: 58  KGL--VKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAP 114

>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            +TG S GIG A+A   A  GA+V   A S    E   Q+I    G        +V D  
Sbjct: 9   LVTGASRGIGRAIAETLAARGAKVIGTATS----ENGAQAISDYLGANGKGLMLNVTDPA 64
Query: 101 AVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL-P 155
           ++++ L+    E G VD+LV N G+     L     +E   +I+ N+   F + KA +  
Sbjct: 65  SIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRA 124
Query: 156 LIKKRQ--------------NGGPASIALMSSQAGQVG 179
           ++KKR               NGG A+ A  +++AG +G
Sbjct: 125 MMKKRHGRIITIGSVVGTMGNGGQANFA--AAKAGLIG 160

>pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid Dehydeogenase (Cad) From Streptomyces Clavuligerus Length = 247

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            ITG SSGIG A A   A EGA V+I AR  EKL      +  A G +V     DV D  
Sbjct: 11  LITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT-AAGAKVHVLELDVADRQ 69
Query: 101 ----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
               AV + ++  G +D+LV N G+ + G +E     +    ID N++G  +  +AALP 
Sbjct: 70  GVDAAVASTVEALGGLDILVNNAGIXLLGPVEDADTTDWTRXIDTNLLGLXYXTRAALPH 129
Query: 157 IKKRQNGGPASIALMSSQAGQV 178
           + + +     ++   SS AG+V
Sbjct: 130 LLRSK----GTVVQXSSIAGRV 147

>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            +TG S GIG A+A   A  GA+V   A S    E   Q+I    G        +V D  
Sbjct: 9   LVTGASRGIGRAIAETLAARGAKVIGTATS----ENGAQAISDYLGANGKGLMLNVTDPA 64
Query: 101 AVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL-P 155
           ++++ L+    E G VD+LV N G+     L     +E   +I+ N+   F + KA +  
Sbjct: 65  SIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRA 124
Query: 156 LIKKRQ--------------NGGPASIALMSSQAGQVG 179
           ++KKR               NGG A+ A  +++AG +G
Sbjct: 125 MMKKRHGRIITIGSVVGTMGNGGQANYA--AAKAGLIG 160

>pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            ++GG+ G G +       EGA+V      G+ L+E  ++              DV    
Sbjct: 11  LVSGGARGXGASHVRAXVAEGAKVVF----GDILDEEGKAXAAELADAARYVHLDVTQPA 66
Query: 101 AVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
             K A+D A    G + VLV N G+   G +E  +L E + ++DVN+ G F  I+A   +
Sbjct: 67  QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRA---V 123
Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           +K  +  G  SI  +SS  G  G
Sbjct: 124 VKPXKEAGRGSIINISSIEGLAG 146

>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 39  HV-FITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           HV  +TGG+ GIGLA+     +     V + AR   + + A Q +Q A G+    +  D+
Sbjct: 5   HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ-AEGLSPRFHQLDI 63
Query: 97  RDFDAVKTALD----EAGPVDVLVVNQGVFV----PGELEVQSLDEVRLMIDVNIIGSFH 148
            D  +++   D    E G +DVLV N G+      P    +Q+     + +  N  G+  
Sbjct: 64  DDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQA----EVTMKTNFFGTRD 119
Query: 149 MIKAALPLIK 158
           +    LPLIK
Sbjct: 120 VCTELLPLIK 129

>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 38  RHVFITGGSSGIG--LALAHQAAKEGARVSIL-ARSGEKLEEAKQSI-QLATGIEVATYS 93
           + V ITG S+GIG   AL +  A  G    IL AR  EKLEE K++I Q     +V    
Sbjct: 34  KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQ 93
Query: 94  ADVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSFH 148
            D+   + +K  ++    E   +D+LV N G  +  +   Q + ++++ + D N+    +
Sbjct: 94  LDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALIN 153
Query: 149 MIKAALPLIKKRQNG 163
           + +A LP+ + + +G
Sbjct: 154 ITQAVLPIFQAKNSG 168

>pdb|3D3W|A Chain A, Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide Length = 244

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R V +TG   GIG          GARV  ++R+   L+     ++   GIE      D+ 
Sbjct: 8   RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL---VRECPGIE--PVCVDLG 62
Query: 98  DFDAVKTALDEAGPVDVLVVNQGV 121
           D++A + AL   GPVD+LV N  V
Sbjct: 63  DWEATERALGSVGPVDLLVNNAAV 86

>pdb|1PR9|A Chain A, Human L-Xylulose Reductase Holoenzyme Length = 244

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R V +TG   GIG          GARV  ++R+   L+     ++   GIE      D+ 
Sbjct: 8   RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL---VRECPGIE--PVCVDLG 62
Query: 98  DFDAVKTALDEAGPVDVLVVNQGV 121
           D++A + AL   GPVD+LV N  V
Sbjct: 63  DWEATERALGSVGPVDLLVNNAAV 86

>pdb|3D3W|B Chain B, Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide Length = 245

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R V +TG   GIG          GARV  ++R+   L+     ++   GIE      D+ 
Sbjct: 8   RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL---VRECPGIE--PVCVDLG 62
Query: 98  DFDAVKTALDEAGPVDVLVVNQGV 121
           D++A + AL   GPVD+LV N  V
Sbjct: 63  DWEATERALGSVGPVDLLVNNAAV 86

>pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
             +  R   +TG  SGIG A+AH  A+ GA V    R+ + ++E    I    G   A  
Sbjct: 27  FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVV 85
Query: 93  SADVRDFDAVKTALDEAGP---VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            AD+ D +      +E      VDVLV N G+      E  SL   R ++ VN+  ++ +
Sbjct: 86  -ADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVL 144
Query: 150 IKAALPLIKKRQNGGPASIA-LMSSQAGQ 177
            ++    +    +G   +IA ++S Q G+
Sbjct: 145 SRSFGTAMLAHGSGRIVTIASMLSFQGGR 173

>pdb|3QLJ|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Avium Length = 322

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSI------LARSGEKLEEAKQSIQ---LAT 85
           +  R V +TG   GIG A A   A EGARV +      L  S      A QS+     A 
Sbjct: 25  VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA 84
Query: 86  GIEVATYSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDV 141
           G E     ++V D+D     ++TA++  G +DVLV N G+     +   S +E   +I V
Sbjct: 85  GGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAV 144
Query: 142 NIIGSFHMIKAALPLIKKRQNGGPA 166
           ++ G F  ++ A    +     G A
Sbjct: 145 HLKGHFATMRHAAAYWRGLSKAGKA 169

>pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV 89
           P  +  +++   +TG   GIG A A   A+EGA V +   + E  E   + I +A G   
Sbjct: 2   PGSMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI-VADGGTA 60
Query: 90  ATYSADVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSL-----DEVRLMID 140
            + + DV D ++ K   D    E G +D LV N  +F  G +++  L     +  +  + 
Sbjct: 61  ISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIF--GGMKLDFLLTIDPEYYKKFMS 118
Query: 141 VNIIGSFHMIKAALPLIKKRQNG 163
           VN+ G+    +A    + KR  G
Sbjct: 119 VNLDGALWCTRAVYKKMTKRGGG 141

>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 39  HV-FITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           HV  +TGG+ GIGLA+     +     V + AR   + + A Q +Q A G+    +  D+
Sbjct: 5   HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ-AEGLSPRFHQLDI 63
Query: 97  RDFDAVKTALD----EAGPVDVLVVNQGVFV----PGELEVQSLDEVRLMIDVNIIGSFH 148
            D  +++   D    E G +DVLV N G+      P    +Q+     + +  N  G+  
Sbjct: 64  DDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQA----EVTMKTNFFGTRD 119
Query: 149 MIKAALPLIK 158
           +    LPLIK
Sbjct: 120 VXTELLPLIK 129

>pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ++ +   +TG S GIG A+A   A+ GA+V   A S    E   Q+I    G      
Sbjct: 8   MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLGDNGKGM 63
Query: 93  SADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           + +V + ++++  L    DE G VD+LV N  +     L     +E   +++ N+   F 
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNAAITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 149 MIKAALP-LIKKRQ 161
           + KA L  ++KKRQ
Sbjct: 124 LSKAVLRGMMKKRQ 137

>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Sinorhizobium Meliloti Length = 267

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSAD 95
           ++   +TG S GIG A+A + A +G  V I  A      EE    I+ A G +  T  AD
Sbjct: 27  NKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQAD 85
Query: 96  VRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEV-RLMIDVNIIGSFHMI 150
           V D  AV+    TA +  G VDVLV N G+  P     ++ D V   +I VN+ G+F+ +
Sbjct: 86  VSDPAAVRRLFATAEEAFGGVDVLVNNAGI-XPLTTIAETGDAVFDRVIAVNLKGTFNTL 144
Query: 151 KAA 153
           + A
Sbjct: 145 REA 147

>pdb|3M1A|A Chain A, The Crystal Structure Of A Short-Chain Dehydrogenase From Streptomyces Avermitilis To 2a Length = 281

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 21/147 (14%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE---------AKQSIQLATGIEVAT 91
            +TG SSG G A+A  A   G  V   AR  E L++            S+ +  G  +  
Sbjct: 9   LVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDV 68
Query: 92  YSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
            +ADV         L   G VDVLV N G    G  E  +  E+R + ++++ G   + +
Sbjct: 69  VAADV---------LARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTR 119
Query: 152 AALPLIKKRQNGGPASIALMSSQAGQV 178
           A LP  ++R   G  S+  +SS  GQ+
Sbjct: 120 ALLPQXRER---GSGSVVNISSFGGQL 143

>pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TG + GIG A+A + A +GA V +   + E  + A  SI    G +    +AD+ 
Sbjct: 7   KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI----GKKARAIAADIS 62
Query: 98  DFDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           D  +VK    E     G +D+LV N  +      +   LD  R +IDVN+ G+F + +A
Sbjct: 63  DPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRA 121

>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With Nadp And Sepiapterin Length = 244

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 40  VFITGGSSGIGLALAHQAAKEGAR-------VSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ITG   GIG A+A + A+           + + +R+   LE+     + A G    T 
Sbjct: 5   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR-AEGALTDTI 63
Query: 93  SADVRDFDAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           +AD+ D   V+      ++  G +D LV N GV   G L   + ++    ++ N+ G+F 
Sbjct: 64  TADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFF 123
Query: 149 MIKAALPLIKKRQNG 163
           + +A   L++++ +G
Sbjct: 124 LTQALFALMERQHSG 138

>pdb|1HXH|A Chain A, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID Dehydrogenase Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ +   +TGG+SG+GL +      EGA+V+      +  E A Q +    G        
Sbjct: 4   LQGKVALVTGGASGVGLEVVKLLLGEGAKVAF----SDINEAAGQQLAAELGERSMFVRH 59
Query: 95  DVR---DFDAVKTALDE-AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           DV    D+  V  A+    G ++VLV N G+ +PG++E   L++   ++ +N    F
Sbjct: 60  DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVF 116

>pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ++ +   +TG S GIG A+A   A+ GA+V   A S    E   Q+I    G      
Sbjct: 8   MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLGDNGKGM 63
Query: 93  SADVRDFDAVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           + +V + ++++  L    DE G VD+LV N  +     L     +E   +++ N+   F 
Sbjct: 64  ALNVTNPESIEAVLKAITDEFGGVDILVNNADITRDNLLMRMKEEEWSDIMETNLTSIFR 123
Query: 149 MIKAALP-LIKKRQ 161
           + KA L  ++KKRQ
Sbjct: 124 LSKAVLRGMMKKRQ 137

>pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TG + GIG A+A + A +GA V +   + E  + A  SI    G +    +AD+ 
Sbjct: 7   KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI----GKKARAIAADIS 62
Query: 98  DFDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           D  +VK    E     G +D+LV N  +      +   LD  R +IDVN+ G+F + +A
Sbjct: 63  DPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRA 121

>pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex With Nadh And Estradiol Length = 260

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 25/156 (16%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           ITGG+SG+GL+ A +   +GA   +L   + E   EAK+      G       A+V    
Sbjct: 14  ITGGASGLGLSTAKRLVGQGATAVLLDVPNSEGETEAKK-----LGGNCIFAPANVTSEK 68
Query: 101 AVKTAL----DEAGPVDVLVVNQGVFVP------GELEVQSLDEVRLMIDVNIIGSFHMI 150
            V+ AL    ++ G +DV V   G+ V        + +V +L++ + +I+VN+IG+F++I
Sbjct: 69  EVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVI 128
Query: 151 KAALPLIKKRQ--NGG-------PASIALMSSQAGQ 177
           +    ++ + +   GG        AS+A    Q GQ
Sbjct: 129 RLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQ 164

>pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 41  FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
            +TG S GIG A+A   A+ GA+V   A S    E   Q+I    G      + +V + +
Sbjct: 13  LVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLGDNGKGXALNVTNPE 68
Query: 101 AVKTAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL-P 155
           +++  L    DE G VD+LV N G+     L     +E   + + N+   F + KA L  
Sbjct: 69  SIEAVLKAITDEFGGVDILVNNAGITRDNLLXRXKEEEWSDIXETNLTSIFRLSKAVLRG 128
Query: 156 LIKKRQ 161
             KKRQ
Sbjct: 129 XXKKRQ 134

>pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex With Nadh Length = 261

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 25/156 (16%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           ITGG+SG+GL+ A +   +GA   +L   + E   EAK+      G       A+V    
Sbjct: 15  ITGGASGLGLSTAKRLVGQGATAVLLDVPNSEGETEAKK-----LGGNCIFAPANVTSEK 69
Query: 101 AVKTAL----DEAGPVDVLVVNQGVFVP------GELEVQSLDEVRLMIDVNIIGSFHMI 150
            V+ AL    ++ G +DV V   G+ V        + +V +L++ + +I+VN+IG+F++I
Sbjct: 70  EVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVI 129
Query: 151 KAALPLIKKRQ--NGG-------PASIALMSSQAGQ 177
           +    ++ + +   GG        AS+A    Q GQ
Sbjct: 130 RLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQ 165

>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex With Nadh And 3-Keto Butyrate Length = 261

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 25/156 (16%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           ITGG+SG+GL+ A +   +GA   +L   + E   EAK+      G       A+V    
Sbjct: 15  ITGGASGLGLSTAKRLVGQGATAVLLDVPNSEGETEAKK-----LGGNCIFAPANVTSEK 69
Query: 101 AVKTAL----DEAGPVDVLVVNQGVFVP------GELEVQSLDEVRLMIDVNIIGSFHMI 150
            V+ AL    ++ G +DV V   G+ V        + +V +L++ + +I+VN+IG+F++I
Sbjct: 70  EVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVI 129
Query: 151 KAALPLIKKRQ--NGG-------PASIALMSSQAGQ 177
           +    ++ + +   GG        AS+A    Q GQ
Sbjct: 130 RLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQ 165

>pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 37  DRHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           D+ V  +TG S GIG A+A + A+ GA V   A +    E    + + A G+E      +
Sbjct: 27  DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA-GLEGRGAVLN 85
Query: 96  VRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  A    V++ L E G ++VLV N G+           DE   +ID N+   F + +
Sbjct: 86  VNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSR 145
Query: 152 AAL-PLIKKR 160
           A L P++K R
Sbjct: 146 AVLRPMMKAR 155

>pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506446) Length = 271

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL------ATGIEVAT 91
           R   +TG S G+G A+A   A  GAR+ I      ++ +  Q  +       A   +V +
Sbjct: 27  RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS 86
Query: 92  YSADVRDFDAVKTALDEAG-PVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            S  +  F      LDE G  VD+LV N G+ F    +E+++ D  R+ ID N+  +F +
Sbjct: 87  ESEIIEAF----ARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRV-IDTNLTSAFMI 141
Query: 150 IKAALPLIKKRQNGGPASIALMSSQ 174
            + A   +  R  G   +I  ++S+
Sbjct: 142 GREAAKRMIPRGYGKIVNIGSLTSE 166

>pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           R   +TG + GIG A+     ++ A  V + AR   + + A + +Q A G+    +  D+
Sbjct: 5   RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQ-AEGLSPRFHQLDI 63
Query: 97  RDFDAVKTALD----EAGPVDVLVVNQGVFV----PGELEVQSLDEVRLMIDVNIIGSFH 148
            D  +++   D    E G +DVLV N  +      P    +Q+     L +  N +G+ +
Sbjct: 64  IDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQA----ELTMKTNFMGTRN 119
Query: 149 MIKAALPLIK 158
           +    LPLIK
Sbjct: 120 VCTELLPLIK 129

>pdb|3A28|C Chain C, Crystal Structure Of L-2,3-Butanediol Dehydrogenase Length = 258

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA-----DV 96
           +TGG+ GIG  ++ + A +G  +++ A   ++ E+A ++I+L   IE A   A     DV
Sbjct: 7   VTGGAQGIGRGISEKLAADGFDIAV-ADLPQQEEQAAETIKL---IEAADQKAVFVGLDV 62
Query: 97  RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            D     +A+DEA    G  DVLV N G+     L   + ++++ +  VN+   F  I+A
Sbjct: 63  TDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQA 122
Query: 153 A 153
           A
Sbjct: 123 A 123

>pdb|4G81|D Chain D, Crystal Structure Of A Hexonate Dehydrogenase Ortholog (Target Efi- 506402 From Salmonella Enterica, Unliganded Structure Length = 255

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 12/148 (8%)
Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TG + G+G A A   A  GARV +       L E+  ++    G +    + DV 
Sbjct: 10  KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT-RKGYDAHGVAFDVT 68
Query: 98  DFDAVKTA---LDEAG-PVDVLVVNQGVFVPG---ELEVQSLDEVRLMIDVNIIGSFHMI 150
           D  A++ A   LD  G  VD+L+ N G+       ELE+++  +V   ID N+  +F + 
Sbjct: 69  DELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKV---IDTNLTSAFLVS 125
Query: 151 KAALPLIKKRQNGGP-ASIALMSSQAGQ 177
           ++A   +  R +GG   +I  ++SQA +
Sbjct: 126 RSAAKRMIARNSGGKIINIGSLTSQAAR 153

>pdb|3LYL|A Chain A, Structure Of 3-Oxoacyl-Acylcarrier Protein Reductase, Fabg From Francisella Tularensis Length = 247

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
            + ++   +TG S GIG  +AH  A +GA V   A S    E+ + S +   G +     
Sbjct: 2   SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSXK-EKGFKARGLV 60
Query: 94  ADVRDFDAVKTALDEAG----PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            ++ D ++++    E       +D+LV N G+         S DE + +I+ N+   F  
Sbjct: 61  LNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLXXRXSEDEWQSVINTNLSSIFRX 120
Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            K  +    K++ G   SI  +   AG  G
Sbjct: 121 SKECVRGXXKKRWGRIISIGSVVGSAGNPG 150

>pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 38  RHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           R   +TG + GIGLA+A +  ++    V + AR   + + A Q +Q A G+    +  D+
Sbjct: 3   RVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQ-AEGLSPRFHQLDI 61
Query: 97  RDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            D  +++   D    E G ++VLV N  V    +  +    +  + +  N   + +M   
Sbjct: 62  DDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRNMCNE 121
Query: 153 ALPLIK 158
            LP++K
Sbjct: 122 LLPIMK 127

>pdb|3F1L|A Chain A, The 0.95 A Structure Of An Oxidoreductase, Ycik From E.Coli Length = 252

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE 88
          +P +  + DR + +TG S GIG   A   A+ GA V +L R+ EKL +    I   TG +
Sbjct: 4  QPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQ 63
Query: 89 VATYSADV 96
             +  D+
Sbjct: 64 PQWFILDL 71

>pdb|3F5Q|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase From Escherichia Coli Cft073 Length = 262

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE 88
          +P +  + DR + +TG S GIG   A   A+ GA V +L R+ EKL +    I   TG +
Sbjct: 6  QPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQ 65
Query: 89 VATYSADV 96
             +  D+
Sbjct: 66 PQWFILDL 73

>pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K R   +TGG+ GIG  +  Q +  G  V +  R   K  EA + ++ +    V  +  D
Sbjct: 11  KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLD 70
Query: 96  VRDFDAVKTALDE-----AGPVDVLVVNQGV 121
           V D  A  ++L +      G +D+LV N GV
Sbjct: 71  VTDPIATMSSLADFIKTHFGKLDILVNNAGV 101

>pdb|3F1K|A Chain A, Crystal Structure Of Ycik From E. Coli, An Oxidoreductase, Complexed With Nadp+ At 2.6a Resolution Length = 252

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE 88
          +P +  + DR + +TG S GIG   A   A+ GA V +L R+ EKL +    I   TG +
Sbjct: 4  QPKQDLLNDRIILVTGASDGIGREAAXTYARYGATVILLGRNEEKLRQVASHINEETGRQ 63
Query: 89 VATYSADV 96
             +  D+
Sbjct: 64 PQWFILDL 71

>pdb|1YDE|A Chain A, Crystal Structure Of Human Retinal Short-Chain DehydrogenaseREDUCTASE 3 Length = 270

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGEL-EVQSLDEVRLMIDVNIIGSFH 148
            DV   D VKT + E     G +D +V N G   P +  E  S    R ++++N++G++ 
Sbjct: 61  CDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYT 120
Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + K ALP ++K Q     ++  +SS  G +G
Sbjct: 121 LTKLALPYLRKSQ----GNVINISSLVGAIG 147

>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And 4-nitro-inden-1-one Length = 283

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIE 88
           P    ++ +   +TG   GIG  +A +  + G +V +  A S E  EE   +I+   G +
Sbjct: 22  PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK-KNGSD 80
Query: 89  VATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
            A   A+V   + +    +EA    G +D++  N GV   G ++  + +E   +  +N  
Sbjct: 81  AACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTR 140
Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ 177
           G F + + A    K  + GG   + LM S  GQ
Sbjct: 141 GQFFVAREAY---KHLEIGG--RLILMGSITGQ 168

>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And An Active Site Inhibitor Length = 283

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 30  PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIE 88
           P    ++ +   +TG   GIG  +A +  + G +V +  A S E  EE   +I+   G +
Sbjct: 22  PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK-KNGSD 80
Query: 89  VATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
            A   A+V   + +    +EA    G +D++  N GV   G ++  + +E   +  +N  
Sbjct: 81  AACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTR 140
Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ 177
           G F + + A    K  + GG   + LM S  GQ
Sbjct: 141 GQFFVAREAY---KHLEIGG--RLILMGSITGQ 168

>pdb|3F5S|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase From Shigella Flexneri 2a Str. 301 Length = 255

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
          + DR + +TG S GIG   A   A+ GA V +L R+ EKL +    I   TG +   +  
Sbjct: 8  LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 67
Query: 95 DV 96
          D+
Sbjct: 68 DL 69

>pdb|3E9Q|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase From Shigella Flexneri Length = 273

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE 88
          +P +  + DR + +TG S GIG   A   A+ GA V +L R+ EKL +    I   TG +
Sbjct: 25 QPKQDLLNDRIILVTGASDGIGREAAXTYARYGATVILLGRNEEKLRQVASHINEETGRQ 84
Query: 89 VATYSADV 96
             +  D+
Sbjct: 85 PQWFILDL 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	7e-40
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	3e-39
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	3e-38
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	7e-38
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	2e-37
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	3e-35
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	4e-35
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	5e-35
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	8e-35
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	2e-34
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	4e-34
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	1e-33
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	2e-33
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	3e-33
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	4e-33
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	4e-33
3imf_A	257	Short chain dehydrogenase; structural genomics, in	4e-33
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	7e-33
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	8e-33
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	1e-32
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	1e-32
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	1e-32
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	1e-32
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	3e-32
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	3e-32
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	3e-32
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	4e-32
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	5e-32
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	5e-32
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	6e-32
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	8e-32
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	1e-31
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	1e-31
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	2e-31
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	2e-31
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	3e-31
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	4e-31
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	4e-31
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	4e-31
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	5e-31
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	6e-31
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	7e-31
1xq1_A	266	Putative tropinone reducatse; structural genomics,	9e-31
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	9e-31
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	1e-30
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	1e-30
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	1e-30
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	1e-30
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	2e-30
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	2e-30
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	3e-30
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	3e-30
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	3e-30
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	3e-30
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	4e-30
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	4e-30
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	4e-30
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	1e-29
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	1e-29
4e4y_A	244	Short chain dehydrogenase family protein; structur	1e-29
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	1e-29
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	1e-29
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	2e-29
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	2e-29
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	2e-29
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	5e-29
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	5e-29
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	6e-29
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	6e-29
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	7e-29
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	7e-29
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	9e-29
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	1e-28
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	1e-28
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	1e-28
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	1e-28
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	2e-28
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	2e-28
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	2e-28
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	2e-28
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	3e-28
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	3e-28
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	3e-28
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	3e-28
4dqx_A	277	Probable oxidoreductase protein; structural genomi	3e-28
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	4e-28
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	4e-28
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	4e-28
1xkq_A	280	Short-chain reductase family member (5D234); parra	5e-28
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	7e-28
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	9e-28
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	1e-27
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	1e-27
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	1e-27
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	1e-27
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	2e-27
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	2e-27
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	2e-27
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	3e-27
1xhl_A	297	Short-chain dehydrogenase/reductase family member	4e-27
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	4e-27
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	4e-27
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	5e-27
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	5e-27
1spx_A	278	Short-chain reductase family member (5L265); paral	7e-27
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	7e-27
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	8e-27
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	2e-26
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	2e-26
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	3e-26
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	3e-26
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	4e-26
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	4e-26
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	6e-26
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	6e-26
3rih_A	293	Short chain dehydrogenase or reductase; structural	7e-26
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	1e-25
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	1e-25
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	2e-25
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	2e-25
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	2e-25
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	3e-25
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	4e-25
3cxt_A	291	Dehydrogenase with different specificities; rossma	6e-25
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	7e-25
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	9e-25
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	1e-24
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	1e-24
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	2e-24
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	2e-24
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	2e-24
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	2e-24
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	2e-24
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	6e-24
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	1e-23
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	1e-23
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-23
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	3e-23
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	4e-23
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	4e-23
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	5e-23
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	6e-23
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	7e-23
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	1e-22
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	2e-22
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	2e-22
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	3e-22
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	3e-22
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	5e-22
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	5e-22
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	1e-21
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	2e-21
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	3e-21
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	3e-21
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	4e-21
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	7e-21
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	1e-20
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	1e-20
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	2e-20
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	2e-20
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	2e-20
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-20
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	3e-20
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	3e-20
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	1e-16
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	3e-20
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	4e-20
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	4e-20
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	4e-20
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	5e-20
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	7e-20
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	1e-19
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	1e-19
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	1e-19
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	3e-19
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	3e-19
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	4e-19
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	2e-18
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	2e-18
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	5e-18
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	6e-18
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	7e-18
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	1e-17
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	2e-17
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	7e-17
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	1e-15
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	2e-15
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	2e-14
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	5e-08
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	7e-08
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	3e-07
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	7e-07
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	7e-07
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	1e-06
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	1e-06
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	2e-06
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	2e-06
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	5e-06
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	5e-06
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	7e-06
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	1e-05
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	2e-05
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-05
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-05
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	4e-05
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	6e-05
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	7e-05
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	7e-05
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	9e-05
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	1e-04
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	1e-04
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	1e-04
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	1e-04
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	3e-04
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	5e-04
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	5e-04
4eye_A	342	Probable oxidoreductase; structural genomics, niai	5e-04
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	5e-04
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	6e-04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	6e-04
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	8e-04
3gms_A	340	Putative NADPH:quinone reductase; structural genom	9e-04

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score =  135 bits (342), Expect = 7e-40
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 8/149 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++                + 
Sbjct: 26  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 85

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
            + D    +  + +A    G +D+L++N        L    +  VR  ++VN +    + 
Sbjct: 86  TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLT 145

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
            AALP++K+       SI ++SS AG+V 
Sbjct: 146 VAALPMLKQSN----GSIVVVSSLAGKVA 170

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score =  132 bits (335), Expect = 3e-39
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +   H+ +TG  SG+G AL     + G +VS++ R  ++L++ +  +    G  V    A
Sbjct: 1   MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL----GNAVIGIVA 56

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+   + V  A   A    G  ++++   G    G + V + +++R +++ N++ +  + 
Sbjct: 57  DLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVA 116

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +  + LI +R  GG   +A + S A QVG
Sbjct: 117 QQTVRLIGER--GG--VLANVLSSAAQVG 141

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score =  129 bits (328), Expect = 3e-38
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             ITG S GIG A+A   A++G  +++ ARS ++LE+    +    G+EV  +  DV   
Sbjct: 5   AVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKA 64

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           ++V+    +     G VDV+V N G+     LE  S +E   MI+VN++G +  +KA L 
Sbjct: 65  ESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLD 124

Query: 156 LIKKRQNGGPASIALMSSQAGQV 178
            +K+       ++   S  + ++
Sbjct: 125 SLKRTGGL---ALVTTSDVSARL 144

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score =  130 bits (328), Expect = 7e-38
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 9/163 (5%)

Query: 21  LLYLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS 80
           L +    PK  R  +    V ITG   GIG   A++ AK  +++ +   +   LEE    
Sbjct: 16  LYFQGHMPKR-RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK 74

Query: 81  IQLATGIEVATYSADVRDFDAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVR 136
            +   G +V T+  D  + + + ++      E G V +LV N GV    +L      ++ 
Sbjct: 75  CK-GLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIE 133

Query: 137 LMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              +VN++  F   KA LP + K  +G    I  ++S AG V 
Sbjct: 134 KTFEVNVLAHFWTTKAFLPAMTKNNHG---HIVTVASAAGHVS 173

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score =  128 bits (324), Expect = 2e-37
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG--IEVATY 92
            +     ITG S GIG  +A   A +G RV ++ARS + LE+    I  +     E    
Sbjct: 5   KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVL 64

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
             D+ D     T + +     G VD+LV    +F+ G L  + +D  R ++++N+I  + 
Sbjct: 65  PLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLS-EPVDNFRKIMEINVIAQYG 123

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           ++K    ++K ++NG    I  ++S+A + G
Sbjct: 124 ILKTVTEIMKVQKNG---YIFNVASRAAKYG 151

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score =  123 bits (311), Expect = 3e-35
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           + D+ + ITG S GIG  +A +    GA++ + AR   ++E     I+   G        
Sbjct: 2   VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIR-DAGGTALAQVL 60

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D  +V      A    G +DVLV N GV     L    +DE   MIDVNI G    I
Sbjct: 61  DVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGI 120

Query: 151 KAALPLIKKRQNGGPASIALMSSQAG 176
            A LP+++ +++G    I  + S   
Sbjct: 121 GAVLPIMEAQRSG---QIINIGSIGA 143

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234

 Score =  121 bits (307), Expect = 4e-35
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
                V ITG S GIG A A     +G RV ++AR  ++L+     ++            
Sbjct: 3   GMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE-----GALPLPG 57

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DVR+      A+       G +  LV N GV V   +   +L+E RL++D N+ G+F  I
Sbjct: 58  DVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGI 117

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A+P + +R  G   +I  + S AG+  
Sbjct: 118 RHAVPALLRRGGG---TIVNVGSLAGKNP 143

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score =  122 bits (308), Expect = 5e-35
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
            ++  V + G    IG  +A + A EG  V    R+GEKL      I+ A G  +   S 
Sbjct: 5   PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE-AAGGRIVARSL 63

Query: 95  DVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           D R+ D V   L+ A    P++V + N G  V   +   +    R + ++     F   +
Sbjct: 64  DARNEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGR 123

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            +  L+     G    I    + A   G
Sbjct: 124 ESARLMLAHGQG---KIFFTGATASLRG 148

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score =  123 bits (310), Expect = 8e-35
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 6/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +  FITGG +G+G  +    +  GA+  I +R  + L+   + I   TG +V     D
Sbjct: 25  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 84

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           VRD D V+  + E     G  ++++ N         E  S +  + + D+ + G+  +  
Sbjct: 85  VRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTL 144

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
                + K Q G   +   +++   + G
Sbjct: 145 EIGKQLIKAQKGA--AFLSITTIYAETG 170

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score =  122 bits (308), Expect = 2e-34
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYS 93
              R  F+TGG++G+G+ L  Q   +G +V+I     + +++A  ++    +G EV    
Sbjct: 6   FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQ 65

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV   +  K A DE     GPV +L  N GV +   +E  S D+   ++ VN+ G  + 
Sbjct: 66  LDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNG 125

Query: 150 IKAALPLIKKR---QNGGPASIALMSSQAGQVG 179
           +   +P + +R          +   +S A  + 
Sbjct: 126 VTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA 158

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score =  120 bits (303), Expect = 4e-34
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +D+  FITGG SGIG  +A    + G    I +RS  ++  A + +  ATG      S D
Sbjct: 26  RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMD 85

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           VR   AV  A+D+A    G +D+L+              S +  + ++D++  G+F++ +
Sbjct: 86  VRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSR 145

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
                  +   G    I  +++  G  G
Sbjct: 146 VLYEKFFRDHGG---VIVNITATLGNRG 170

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score =  118 bits (299), Expect = 1e-33
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           I  +   ITG SSGIGLA+A   AKEGA + ++AR  ++L EA +S++   G+ V   + 
Sbjct: 5   ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAV 64

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV   + V   ++      G  D+LV N G      +   + ++ +   ++ ++ +  + 
Sbjct: 65  DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +  +P ++ R  G   +I   +S      
Sbjct: 125 RGLVPGMRARGGG---AIIHNASICAVQP 150

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score =  118 bits (297), Expect = 2e-33
 Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
            ++ +   ITG SSGIG A A   A EGA V+I AR  EKL      +  A G +V    
Sbjct: 4   ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT-AAGAKVHVLE 62

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D   V  A+       G +D+LV N G+ + G +E     +   MID N++G  +M
Sbjct: 63  LDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYM 122

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAG 176
            +AALP + + +     ++  MSS AG
Sbjct: 123 TRAALPHLLRSK----GTVVQMSSIAG 145

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230

 Score =  116 bits (294), Expect = 3e-33
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + ITG SSG+G  LA     EG    +  RS  KL      +       V   + D+   
Sbjct: 4   IVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----SNNVGYRARDLASH 59

Query: 100 DAVKTALDEA-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK 158
             V+   ++       +V + G    G L+ Q  ++++ +I+ N+  + ++++  +   K
Sbjct: 60  QEVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYK 119

Query: 159 KRQNGGPASIALMSSQAGQ 177
            +       + ++ S A Q
Sbjct: 120 DQ-PVN---VVMIMSTAAQ 134

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score =  118 bits (297), Expect = 4e-33
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG S+GIG  +A   A+ GA+V++ AR  + L+     I    G +      D
Sbjct: 31  SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA-GVGGKALPIRCD 89

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   D V+  LD+     G +D+ V N G+     +    L+E + + D N+ G F   +
Sbjct: 90  VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQ 149

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           AA   +  +  GG  +I   +S +G + 
Sbjct: 150 AAARAMVDQGLGG--TIITTASMSGHII 175

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score =  118 bits (297), Expect = 4e-33
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYS 93
            +DR   +TG S GIG A+A    ++G +V   AR+   +EE     + A     +  Y 
Sbjct: 30  WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYR 89

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            D+ + + + +           VD+ + N G+  P  L   S    + M +VN++     
Sbjct: 90  CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSIC 149

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAG 176
            + A   +K+R N     I  ++S +G
Sbjct: 150 TREAYQSMKER-NVDDGHIININSMSG 175

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score =  117 bits (295), Expect = 4e-33
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K++ V ITGGSSG+G  +A + AKEGARV I  R+ EKLEEAK  I+     ++ T   D
Sbjct: 5   KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIE-QFPGQILTVQMD 63

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           VR+ D ++  +++     G +D+L+ N         E  S++    +I++ + G+F+  +
Sbjct: 64  VRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQ 123

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A      ++   G  +I  M +      
Sbjct: 124 AIGKYWIEKGIKG--NIINMVATYAWDA 149

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279

 Score =  117 bits (295), Expect = 7e-33
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 10/150 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K +   +TG S GIG A+A   A+ GA V+I   S    E+A+   +   G+    Y  +
Sbjct: 33  KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK-TYGVHSKAYKCN 91

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGV--FVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           + D  +V+  + +     G +DV V N GV      E++V + D    +I V++ G ++ 
Sbjct: 92  ISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYC 151

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
                 + KK   G   S+ + SS +G++ 
Sbjct: 152 SHNIGKIFKKNGKG---SLIITSSISGKIV 178

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score =  117 bits (296), Expect = 8e-33
 Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 27  RPKPVRIPIKD---RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL 83
            P  +   +     R   +TGG+SGIGLA A + A+ GAR+ +       LE+A   ++ 
Sbjct: 18  GPGSMDGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLR- 76

Query: 84  ATGIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMI 139
             G +      DVR  D +    DEA    G VDV+  N G+ V G L   + D+ R +I
Sbjct: 77  GQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVI 136

Query: 140 DVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           D+++ GS H ++A LP + ++  GG   IA  +S AG V 
Sbjct: 137 DIDLWGSIHAVEAFLPRLLEQGTGG--HIAFTASFAGLVP 174

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273

 Score =  116 bits (293), Expect = 1e-32
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K     +TGGS GIG A+  + A  GARV   +R+ ++L+E  +  +   G+ V     D
Sbjct: 20  KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR-EKGLNVEGSVCD 78

Query: 96  VRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           +         +        G +++LV N GV +  E +  +  +  +++  N   ++H+ 
Sbjct: 79  LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLS 138

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A PL+K  QNG   ++  +SS AG   
Sbjct: 139 QIAYPLLKASQNG---NVIFLSSIAGFSA 164

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score =  116 bits (293), Expect = 1e-32
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 9/150 (6%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
                 +FITG +SG G A A + A+ G  + +  R  E+L+      +L+    V   +
Sbjct: 18  SHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAG--ELSAKTRVLPLT 75

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFH 148
            DVRD  A+  A+D        +  L+ N G+ +  +  +   LD+   M+D NI G  +
Sbjct: 76  LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLY 135

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQV 178
             +  LP +     G   SI  + S AG+ 
Sbjct: 136 STRLLLPRLIAHGAGA--SIVNLGSVAGKW 163

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score =  116 bits (293), Expect = 1e-32
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG + GIG  +A   A  GAR+ +  R   +L+ A++++    G +V T + D
Sbjct: 19  DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAID 78

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + + DA       A    G +DVLV N G+  P  +           I VN+     +  
Sbjct: 79  LAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLAS 138

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A    +     GG  +I  ++S A    
Sbjct: 139 AVGKAMVAAGEGG--AIITVASAAALAP 164

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277

 Score =  116 bits (293), Expect = 1e-32
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-------------ARSGEKLEEAKQSIQ 82
           + R  FITG + G G A A + A EGA +  +               S + L E  + ++
Sbjct: 10  EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE 69

Query: 83  LATGIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLM 138
            A    +     D RDFD ++  +D+     G +D++V N GV  P   +  + ++ R +
Sbjct: 70  -AANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV 128

Query: 139 IDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +D+N+ G+++ + A  P I +   GG  SI L+SS AG   
Sbjct: 129 MDINVTGTWNTVMAGAPRIIEGGRGG--SIILISSAAGMKM 167

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265

 Score =  115 bits (290), Expect = 3e-32
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            ++ + +TGG+ GIGLA     A  GA V+++ RS     E  + +    G++   Y  D
Sbjct: 13  VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCD 72

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V + D V   + +     GP+  L+ N GV V       + ++   + DVN+ G F+  +
Sbjct: 73  VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCR 132

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A   L  ++Q  G  SI + SS + Q+ 
Sbjct: 133 AVAKLWLQKQQKG--SIVVTSSMSSQII 158

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266

 Score =  115 bits (290), Expect = 3e-32
 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 14/147 (9%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
               + V ITG SSGIG A+A + ++EG  + +LAR  E+L+       L          
Sbjct: 13  GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKA------LNLP-NTLCAQ 65

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D     TA+  A    GP D +V N G+ + G+++ Q  +E + M DVN++G  + 
Sbjct: 66  VDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNG 125

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAG 176
           ++A L  +K R  G   +I  +SS AG
Sbjct: 126 MQAVLAPMKARNCG---TIINISSIAG 149

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260

 Score =  114 bits (289), Expect = 3e-32
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            +R   +TGG+  IGLA     A+ GARV I         +A + ++   G +V++   D
Sbjct: 12  DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLR-MEGHDVSSVVMD 70

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMI 150
           V + ++V+ A+       G VD+LV   G+ +   + E  +  +    +D+N+ G F   
Sbjct: 71  VTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSC 130

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A   ++ +++ G    I  + S +G + 
Sbjct: 131 QAVGRIMLEQKQG---VIVAIGSMSGLIV 156

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score =  114 bits (288), Expect = 4e-32
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 7/144 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R V +TG   GIG          GARV  ++R+   L+             +     D
Sbjct: 6   AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLV-----RECPGIEPVCVD 60

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           + D++A + AL   GPVD+LV N  V +       + +      +VN+     + +    
Sbjct: 61  LGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVAR 120

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +  R   G  +I  +SSQ  Q  
Sbjct: 121 GLIARGVPG--AIVNVSSQCSQRA 142

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score =  114 bits (288), Expect = 5e-32
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSA 94
            +    +TGGSSGIGLA      + GA V+  AR GE+L  A+ ++ Q   G  +     
Sbjct: 7   SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVC 66

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D   V+   +      G   +LV N G          + +     + +      H +
Sbjct: 67  DVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPV 126

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A LP ++ R +    +I  ++S      
Sbjct: 127 RAFLPQLESRADA---AIVCVNSLLASQP 152

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score =  114 bits (288), Expect = 5e-32
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ-LATGIEVATYS 93
           I+ +   +T GSSG+G A A + A+ GAR+ + +R+ EKLE A   I  L +G +V   +
Sbjct: 5   IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64

Query: 94  ADVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
            D+R+   +    ++A   G  D+LV + G   PG      +++      +    +  + 
Sbjct: 65  GDIREPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVG 124

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A   + ++  G    +  + S      
Sbjct: 125 RRAAEQMVEKGWG---RMVYIGSVTLLRP 150

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246

 Score =  114 bits (287), Expect = 6e-32
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 9/144 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + + +T  + GIG A A   A+EGA+V     +  KL+E      L     + T   D
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE------LEKYPGIQTRVLD 58

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           V     +    +E   +DVL    G    G +      +    +++N+   + MIKA LP
Sbjct: 59  VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLP 118

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +  +++G   +I  MSS A  V 
Sbjct: 119 KMLAQKSG---NIINMSSVASSVK 139

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260

 Score =  114 bits (287), Expect = 8e-32
 Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 9/143 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +TGGS GIG  +  + A  GA V   +R+ ++L +     + + G +V     D+     
Sbjct: 14  VTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR-SKGFKVEASVCDLSSRSE 72

Query: 102 VKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            +  ++       G +++LV N G+ +  E +  ++++  L++ +N   ++H+   A P 
Sbjct: 73  RQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPF 132

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           +K  + G   ++  +SS +G + 
Sbjct: 133 LKASERG---NVVFISSVSGALA 152

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score =  113 bits (285), Expect = 1e-31
 Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
                 +TG   GIG          GA+V  + R+   L              +     D
Sbjct: 6   SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLA-----KECPGIEPVCVD 60

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           + D+DA + AL   GPVD+LV N  + +       + +       VN+   F + +    
Sbjct: 61  LGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVAR 120

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +  R   G  SI  +SS    V 
Sbjct: 121 DMINRGVPG--SIVNVSSMVAHVT 142

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280

 Score =  114 bits (287), Expect = 1e-31
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 20/157 (12%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL-------------ARSGEKLEEAKQSIQLATG 86
            FITG + G G + A + A EGA +                  S E L+E  + ++   G
Sbjct: 18  AFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVE-DQG 76

Query: 87  IEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
            +  T   DVRD  A++  + +     G +DV+V N GV   G +   + ++   +I VN
Sbjct: 77  RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVN 136

Query: 143 IIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + G++  ++A +P + +  NGG  SI ++SS AG   
Sbjct: 137 LTGTWRTLRATVPAMIEAGNGG--SIVVVSSSAGLKA 171

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score =  113 bits (285), Expect = 2e-31
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   ITG + GIG A A    +EGA V+I     E+  +A   I    G        D
Sbjct: 7   EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI----GPAAYAVQMD 62

Query: 96  VRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   D    A+   ++ AG +D+LV N  +F    +   + +    +  +N+ G+   ++
Sbjct: 63  VTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQ 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           AA   +  +  GG   I  M+SQAG+ G
Sbjct: 123 AAARQMIAQGRGG--KIINMASQAGRRG 148

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score =  111 bits (281), Expect = 2e-31
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V ITG + G+G A A      G  + +  R    L E      LA  +      AD+ D 
Sbjct: 3   VLITGATGGLGGAFARALK--GHDLLLSGRRAGALAE------LAREVGARALPADLADE 54

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK 159
              K  L+EAGP+D+LV   G      +     D V  M+  +++ +       L   + 
Sbjct: 55  LEAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAA----FVLKHARF 110

Query: 160 RQNGGPASIALMSSQAGQVG 179
           ++           +    V 
Sbjct: 111 QKGA---RAVFFGAYPRYVQ 127

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score =  112 bits (282), Expect = 3e-31
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 7/146 (4%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TG   GIG A+A +  K+G  V+I   +    +     I    G        DV 
Sbjct: 3   KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN-QAGGHAVAVKVDVS 61

Query: 98  DFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D D    AV+ A    G  DV+V N GV     +E  + + V  + ++N+ G    I+AA
Sbjct: 62  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAA 121

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
           +   KK  +GG   I    SQAG VG
Sbjct: 122 VEAFKKEGHGG--KIINACSQAGHVG 145

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score =  111 bits (281), Expect = 4e-31
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 12/142 (8%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TG ++G G  +  +  ++G +V    R  E+L+E K  +    G  +     DVR+ 
Sbjct: 3   VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----GDNLYIAQLDVRNR 58

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
            A++  L         +D+LV N G+ +  E     S+++   MID N  G  +M +A L
Sbjct: 59  AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118

Query: 155 PLIKKRQNGGPASIALMSSQAG 176
           P + +R +G    I  + S AG
Sbjct: 119 PGMVERNHG---HIINIGSTAG 137

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score =  112 bits (282), Expect = 4e-31
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  +   +TG S GIG A+A +    GARV + AR  EKL   ++ I  A G E  +++ 
Sbjct: 27  LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIV-AAGGEAESHAC 85

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHM 149
           D+   DA+       L   G  DVLV N GV    G L      E   +I VN+   + +
Sbjct: 86  DLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLL 145

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           ++A  P +   + G    I  +SS AG+  
Sbjct: 146 LRAFAPAMIAAKRG---HIINISSLAGKNP 172

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score =  112 bits (283), Expect = 4e-31
 Identities = 47/148 (31%), Positives = 64/148 (43%), Gaps = 13/148 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG +SGIGLA A +   EGARV I  R  + L+ A   I    G       AD
Sbjct: 28  NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI----GGGAVGIQAD 83

Query: 96  VRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
             +   +         EAG +DVL VN G      L   + ++     D N+ G    ++
Sbjct: 84  SANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQ 143

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            ALPL+ +   G   S+ L  S AG  G
Sbjct: 144 KALPLLAR---GS--SVVLTGSTAGSTG 166

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299

 Score =  113 bits (284), Expect = 5e-31
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 20/161 (12%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL------------ARSGEKLEEAKQSIQL 83
           + +  FITG + G G + A   A+EGA +  +              + + L E  + ++ 
Sbjct: 27  EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE- 85

Query: 84  ATGIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPG-ELEVQSLDEVRLM 138
           A G  +     DVRDFDA++ A+D+     G +D+++ N  +   G  L        R M
Sbjct: 86  ALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDM 145

Query: 139 IDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           IDVN+ G++   + A+P I   + GG  SI   SS  G  G
Sbjct: 146 IDVNLNGAWITARVAIPHIMAGKRGG--SIVFTSSIGGLRG 184

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score =  112 bits (282), Expect = 6e-31
 Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 12/151 (7%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEG---ARVSILARSGEKLEEAKQSIQLA-TGIEVA 90
           +  + V ITG S+GIG A A +  +      ++ + AR  EKLEE K++I       +V 
Sbjct: 31  LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVH 90

Query: 91  TYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIG 145
               D+   + +K  ++        +D+LV N G  +  + +   + ++++ + D N+  
Sbjct: 91  VAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTA 150

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
             ++ +A LP+ + + +G    I  + S AG
Sbjct: 151 LINITQAVLPIFQAKNSG---DIVNLGSIAG 178

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score =  111 bits (280), Expect = 7e-31
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           + +++V       GIGL  + +  K   +  ++    E      +   +   + +  ++ 
Sbjct: 3   LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62

Query: 95  DV-RDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           DV       K  L +       VD+L+   G+            ++   I +N  G  + 
Sbjct: 63  DVTVPVAESKKLLKKIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNT 114

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             A L    KR+ G    IA + S  G   
Sbjct: 115 TTAILDFWDKRKGGPGGIIANICSVTGFNA 144

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266

 Score =  111 bits (280), Expect = 9e-31
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K + V +TGG+ GIG A+  + A  GA +   AR+  +L E     Q   G +V     D
Sbjct: 13  KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ-KKGFQVTGSVCD 71

Query: 96  VRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
                  +  +        G +D+L+ N G          + ++    I  N+  ++H+ 
Sbjct: 72  ASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLS 131

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A PL+K    G   +I  MSS AG V 
Sbjct: 132 QLAHPLLKASGCG---NIIFMSSIAGVVS 157

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score =  111 bits (279), Expect = 9e-31
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 13/148 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   + GG+ G+GLA   +  + GA V +  R+   +   ++      G  V    +D
Sbjct: 7   QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----GPRVHALRSD 62

Query: 96  VRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D +        A    G +D+L +N GV      +  S         VN  G+F  ++
Sbjct: 63  IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQ 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
              PLI++       SI   SS A + G
Sbjct: 123 RLTPLIRE-----GGSIVFTSSVADEGG 145

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score =  111 bits (280), Expect = 1e-30
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            D+ V I+G    +G  LA + A++GA + + AR+ E+LE+  + +   TG    +   D
Sbjct: 10  TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT-DTGRRALSVGTD 68

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMI 150
           + D   V   +DE     G VDV++ N             + + +R  I++ + G+  +I
Sbjct: 69  ITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLI 128

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +   P +++    G  ++  ++S   +  
Sbjct: 129 QGFTPALEES--KG--AVVNVNSMVVRHS 153

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score =  112 bits (283), Expect = 1e-30
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-------LEEAKQSIQLATGIE 88
               VFITG S GIG A+A +AAK+GA + I A++ +        +  A + I+ A G +
Sbjct: 44  AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIE-AVGGK 102

Query: 89  VATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
                 DVRD   +  A+++A    G +D+LV N                + LM++VN  
Sbjct: 103 ALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTR 162

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           G++   KA +P +KK +      I  +S       
Sbjct: 163 GTYLASKACIPYLKKSKVA---HILNISPPLNLNP 194

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score =  110 bits (278), Expect = 1e-30
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 15/151 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGAR-------VSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ITG   GIG A+A + A+           + + +R+   LE+     + A G    T 
Sbjct: 5   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR-AEGALTDTI 63

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           +AD+ D   V+          G +D LV N GV   G L   + ++    ++ N+ G+F 
Sbjct: 64  TADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFF 123

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + +A   L++++ +G    I  ++S A    
Sbjct: 124 LTQALFALMERQHSG---HIFFITSVAATKA 151

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281

 Score =  111 bits (280), Expect = 1e-30
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + R   +TGG +G+G  +A   + EG  V I  R  + L+ A   I   TG  V     D
Sbjct: 32  EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCD 91

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPG-ELEVQSLDEVRLMIDVNIIGSFHMI 150
           V D D V             +D+LV N G  VP   LE  + ++   ++  N+ G+F   
Sbjct: 92  VGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCT 151

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A  ++K +   G   I    S + Q  
Sbjct: 152 QHAFRMMKAQTPRG-GRIINNGSISAQTP 179

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score =  110 bits (277), Expect = 2e-30
 Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITGG+ GIGLA+A +  +EGA+V I  R  +  E+A +S+   T  ++  +  D
Sbjct: 5   DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV--GTPDQIQFFQHD 62

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
             D D      D      GPV  LV N G+ V   +E  +  E R ++ VN+ G F   +
Sbjct: 63  SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  +K +  G   SI  MSS  G VG
Sbjct: 123 LGIQRMKNKGLGA--SIINMSSIEGFVG 148

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262

 Score =  110 bits (278), Expect = 2e-30
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   +TG    IGLA A + A+EG  +++L  + E LE+A+ S++   G+E  +Y  D
Sbjct: 6   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR-EKGVEARSYVCD 64

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMI 150
           V   +AV   +D      G +D L  N G       ++    D+   ++ +N+ G+FH++
Sbjct: 65  VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 124

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KA    +  +  G    I   +S AG  G
Sbjct: 125 KAVSRQMITQNYG---RIVNTASMAGVKG 150

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317

 Score =  111 bits (280), Expect = 3e-30
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 19/156 (12%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL------------ARSGEKLEEAKQSIQLATGI 87
            FITG + G G   A + A++GA +  +              S E+L+E  + ++   G 
Sbjct: 49  AFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE-EQGR 107

Query: 88  EVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
            +    ADVRD  +++  +DEA    G +D+LV N G+   GE+   +  +   ++  N+
Sbjct: 108 RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNL 167

Query: 144 IGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           IG++H  +A LP + +R  GG  S+  +SS  G  G
Sbjct: 168 IGAWHACRAVLPSMIERGQGG--SVIFVSSTVGLRG 201

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285

 Score =  110 bits (278), Expect = 3e-30
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 10/139 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ------LATGIEV 89
           + + +FI+GGS GIGLA+A + A +GA V+++A+S E   +   +I          G + 
Sbjct: 8   RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA 67

Query: 90  ATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIG 145
                D+RD DAV  A+ +     G +D+ V N      G +E   L    LM  + + G
Sbjct: 68  LPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRG 127

Query: 146 SFHMIKAALPLIKKRQNGG 164
           ++ + ++ +P +K R N  
Sbjct: 128 TYAVSQSCIPHMKGRDNPH 146

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281

 Score =  110 bits (278), Expect = 3e-30
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSA 94
             +   ITG +SGIGLA+A   AK GA + +      +++      +   +   V  + A
Sbjct: 24  MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA 83

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+     +   +       G  D+LV N GV    ++E   +++   +I VN+  SFH I
Sbjct: 84  DMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTI 143

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A+P +KK+  G    I  ++S  G V 
Sbjct: 144 RGAIPPMKKKGWG---RIINIASAHGLVA 169

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score =  109 bits (275), Expect = 3e-30
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + + +TG S GIG ++            +  +ARS   L++ K+      G        D
Sbjct: 3   KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY----GDRFFYVVGD 58

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMI 150
           + +   +K  ++ A    G +D LV N GV  P   +    ++  + + D+N      ++
Sbjct: 59  ITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
             ALP +KK    G  ++  +SS A  + 
Sbjct: 119 GIALPELKKT--NG--NVVFVSSDACNMY 143

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score =  109 bits (275), Expect = 4e-30
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +   +TGG+ GIG  ++ + A +G  +++  L +  E+  E  + I+ A   +      D
Sbjct: 3   KVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIE-AADQKAVFVGLD 61

Query: 96  VRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D      A+  A ++ G  DVLV N G+     L   + ++++ +  VN+   F  I+
Sbjct: 62  VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           AA     +    G   I   +S A   G
Sbjct: 122 AASRKFDELGVKG--KIINAASIAAIQG 147

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score =  109 bits (276), Expect = 4e-30
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG-IEVATYS 93
           +K +   +TG ++GIG A+A     EGA V I  R  E + E  + I+       +    
Sbjct: 8   LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67

Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           AD+      +  +++   VD+L+ N G+F P E      ++   + +VNI+    + ++ 
Sbjct: 68  ADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSY 127

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
           L  + +R+ G    +  ++S+A  + 
Sbjct: 128 LKKMIERKEG---RVIFIASEAAIMP 150

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score =  110 bits (276), Expect = 4e-30
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +   +TG SSG G A+A  A   G  V   AR  E L++       A        S DV 
Sbjct: 6   KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA----AYPDRAEAISLDVT 61

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D + +     +     G VDVLV N G    G  E  +  E+R + ++++ G   + +A 
Sbjct: 62  DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRAL 121

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
           LP +++R +G   S+  +SS  GQ+ 
Sbjct: 122 LPQMRERGSG---SVVNISSFGGQLS 144

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286

 Score =  109 bits (274), Expect = 1e-29
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 24/161 (14%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL----------------ARSGEKLEEAKQSIQL 83
            F+TG + G G + A + A+EGA +  +                A + E L E    ++ 
Sbjct: 14  AFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK- 72

Query: 84  ATGIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLM 138
                + T   DVRD+DA+K A+D      G +D++V N G+   G+ L+  S ++   M
Sbjct: 73  GHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEM 132

Query: 139 IDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           ID+N+ G +  +KA +P +     GG  SI L SS  G   
Sbjct: 133 IDINLAGVWKTVKAGVPHMIAGGRGG--SIILTSSVGGLKA 171

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score =  109 bits (274), Expect = 1e-29
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 28  PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--T 85
           P  +++  +DR   +TGG SGIG  +A      GA V I+ R+ +KL  A Q ++     
Sbjct: 2   PGSMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGAN 61

Query: 86  GIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVF-VPGELEVQSLDEVRLMID 140
           G  +     D+ + D    A+D      G +  +V   G     G +     +  R  +D
Sbjct: 62  GGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVD 121

Query: 141 VNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +N+ G+ +++K A   + +   GG  S   +SS A    
Sbjct: 122 LNVNGTMYVLKHAAREMVR-GGGG--SFVGISSIAASNT 157

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244

 Score =  108 bits (271), Expect = 1e-29
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TGGS GIG A+     +      I     +                +    AD+   
Sbjct: 7   YLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAE----------NLKFIKADLTKQ 56

Query: 100 DAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI 157
             +   LD       D + +N G+ + G +    ++ ++ ++D+N+  S + IK     +
Sbjct: 57  QDITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNL 116

Query: 158 KKRQNGGPASIALMSSQAGQVG 179
           K    G   SI    S    + 
Sbjct: 117 KV---GA--SIVFNGSDQCFIA 133

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score =  108 bits (272), Expect = 1e-29
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG  +GIG  +A   A  GA V +   + +        IQ   G +      D
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ-QLGGQAFACRCD 68

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +     +    D A    G VD+LV N G   P   ++  + + R   ++N+   FH+ +
Sbjct: 69  ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDM-PMADFRRAYELNVFSFFHLSQ 127

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
              P ++K   G    I  ++S A +  
Sbjct: 128 LVAPEMEKNGGG---VILTITSMAAENK 152

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score =  108 bits (272), Expect = 1e-29
 Identities = 39/148 (26%), Positives = 53/148 (35%), Gaps = 10/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R   +TGGS GIG A+A    K GA V+I        +     +             D
Sbjct: 11  SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL----ENGGFAVEVD 66

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V    +V  A+ +A    G  D+L  N GV         + +E     DVN  G F   +
Sbjct: 67  VTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQ 126

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A          G   I   +S A +VG
Sbjct: 127 IACRHFLASNTKG--VIVNTASLAAKVG 152

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278

 Score =  108 bits (272), Expect = 2e-29
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 23/160 (14%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL------------ARSGEKLEEAKQSIQL 83
             +  FITG + G G A A + A +GA +  +              + E+L    + ++ 
Sbjct: 12  TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE- 70

Query: 84  ATGIEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMI 139
             G  +    ADVRD +++  AL       G +D++V N G+           D    +I
Sbjct: 71  DIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMS----AGDDGWHDVI 126

Query: 140 DVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           DVN+ G +H IK A+P + K+  GG  SI L+SS AG  G
Sbjct: 127 DVNLTGVYHTIKVAIPTLVKQGTGG--SIVLISSSAGLAG 164

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score =  107 bits (270), Expect = 2e-29
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 16/159 (10%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAK---EGARVSILARSGEKLEEAKQSIQ-LATGIEVAT 91
                 +TG S G G ALA Q A+    G+ + + ARS   L + K+ +      ++V  
Sbjct: 5   GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64

Query: 92  YSADVRDFDAVKTALDEA--------GPVDVLVVNQGVFVP---GELEVQSLDEVRLMID 140
            +AD+     V+  L               +L+ N         G L V  L EV     
Sbjct: 65  AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124

Query: 141 VNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +N+     +    L   +    G   ++  +SS      
Sbjct: 125 LNLTSMLCLTSGTLNAFQDS-PGLSKTVVNISSLCALQP 162

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274

 Score =  108 bits (271), Expect = 2e-29
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-------KLEEAKQSIQLATGIE 88
             + +FITG S GIGLA+A +AA++GA V+I A+S          +  A  ++  A G +
Sbjct: 5   SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVN-AAGGQ 63

Query: 89  VATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
                 D+R+ D V+ A+       G +D+LV N             +    LM  VN  
Sbjct: 64  GLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNAR 123

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           GSF   +A LP + +  N     I  ++       
Sbjct: 124 GSFVCAQACLPHLLQAPNP---HILTLAPPPSLNP 155

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267

 Score =  106 bits (268), Expect = 5e-29
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 10/151 (6%)

Query: 36  KDRHVFITG--GSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATY 92
           K + V +TG  G  G+G+  A   A+ GA V+I  A   +  EE  + ++   GI+   Y
Sbjct: 19  KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAY 78

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
              V  +++ +  + +     G +D  + N G      +   S++    ++ V++ G+FH
Sbjct: 79  KCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFH 138

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             KA     K+R  G   S+ + +S +G + 
Sbjct: 139 CAKAVGHHFKERGTG---SLVITASMSGHIA 166

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256

 Score =  106 bits (268), Expect = 5e-29
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V +TGG+ GIG A+A   A+EGA V++     E  E A+        I  A +  D
Sbjct: 5   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE-------AIGGAFFQVD 57

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D       ++EA    G VDVLV N  +  PG      L E R +++VN+    H+  
Sbjct: 58  LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSA 117

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A   ++K   GG  +I  ++S  G   
Sbjct: 118 LAAREMRK-VGGG--AIVNVASVQGLFA 142

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score =  106 bits (268), Expect = 6e-29
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +++   +T  + GIGLA+A + A++GA V + +R  E ++    ++Q   G+ V      
Sbjct: 13  ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQ-GEGLSVTGTVCH 71

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           V   +  +  +  A    G VD+LV N  V    G +   + +    ++ VN+  +  M 
Sbjct: 72  VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 131

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KA +P ++KR  G   S+ ++SS      
Sbjct: 132 KAVVPEMEKRGGG---SVLIVSSVGAYHP 157

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score =  106 bits (268), Expect = 6e-29
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
              +   +TG  SG+G A+A   A  G  V++  R  + L+E    I    G +      
Sbjct: 26  TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI----GDDALCVPT 81

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHM 149
           DV D D+V       +++ G VDVL  N G   P   +E  +  + + ++D N+ G F  
Sbjct: 82  DVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLC 141

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            + A  ++K ++  G   I    S +    
Sbjct: 142 TQEAFRVMKAQEPRG-GRIINNGSISATSP 170

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score =  106 bits (266), Expect = 7e-29
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K +   +TG + G+G+ +    +++      L R+ E L        LA    V    +
Sbjct: 3   LKKKIAVVTGATGGMGIEIVKDLSRDHIVY-ALGRNPEHLAA------LAEIEGVEPIES 55

Query: 95  DVRDFDAVKT---ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           D+      +     L     VD LV    V     +E  S+ E    +D+N+I    + +
Sbjct: 56  DIVKEVLEEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSR 115

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             LP ++         +  ++S AG   
Sbjct: 116 QLLPALRAAS----GCVIYINSGAGNGP 139

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260

 Score =  106 bits (267), Expect = 7e-29
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSA 94
           K +   +TG +SGIGL +A   A +GA + +       ++E+ +  +    G++V    A
Sbjct: 3   KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+   +AV+  +D A    G +D+LV N G+     +E    ++   ++ +N+   FH  
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
            AALP +KK+  G    I  ++S  G V 
Sbjct: 123 AAALPHMKKQGFG---RIINIASAHGLVA 148

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score =  106 bits (268), Expect = 9e-29
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 16/156 (10%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ----LATGIEVAT 91
           + +   +TGG++GIG A+  +  + G+ V I +R  E+L+ A   +Q          V  
Sbjct: 17  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76

Query: 92  YSADVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
              ++R+ + V    K+ LD  G ++ LV N G       E  S      +++ N+ G+F
Sbjct: 77  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 136

Query: 148 HMIKAALPLIKKRQNGGPASIALMSS-----QAGQV 178
           +M KA      K   G   SI  +           V
Sbjct: 137 YMCKAVYSSWMKEHGG---SIVNIIVPTKAGFPLAV 169

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score =  106 bits (267), Expect = 1e-28
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
                 ITGG+SG+G AL  +   EGARV++L +S E+L E + +     G        D
Sbjct: 4   TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH----GGNAVGVVGD 59

Query: 96  VRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL-----MIDVNIIGS 146
           VR       A +  L   G +D L+ N G++          ++        +  VN+ G 
Sbjct: 60  VRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGY 119

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            H +KA LP +      G  S+    S AG   
Sbjct: 120 IHAVKACLPALVSS--RG--SVVFTISNAGFYP 148

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score =  106 bits (266), Expect = 1e-28
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   +TG  +GIGLA+A + A EG  V      G+  + A   I    G   A    D
Sbjct: 28  AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCGAAACRVD 83

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D   +   +D      G VD LV N GV     L   ++++   +I +N+ G++   K
Sbjct: 84  VSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTK 143

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A P + +R  G   +I  +SS AGQV 
Sbjct: 144 HAAPRMIERGGG---AIVNLSSLAGQVA 168

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score =  105 bits (265), Expect = 1e-28
 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE--VATYS 93
           K R + +TG + GIG A A   A  GA V +L R+   L E    I+ A   +  +   +
Sbjct: 13  KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN 72

Query: 94  ADVRDFDA----VKTALDEAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFH 148
            +                E G +D L+ N  +      LE    ++   ++ VN+  +F 
Sbjct: 73  LENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFM 132

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + +A LPL+K+ ++    SIA  SS  G+ G
Sbjct: 133 LTRALLPLLKRSEDA---SIAFTSSSVGRKG 160

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score =  105 bits (264), Expect = 1e-28
 Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 23/149 (15%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +++ + GGS  +G  +      +      +        +              +++  
Sbjct: 21  MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-------------HSFTIK 67

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMI 150
               + +K+ +++       VD  V   G +  G     + L  V+ MID+N+  +F   
Sbjct: 68  DSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASA 127

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
                L+ +   GG     L  + A    
Sbjct: 128 HIGAKLLNQ---GG--LFVLTGASAALNR 151

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score =  106 bits (266), Expect = 2e-28
 Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 24/156 (15%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL------------ARSGEKLEEAKQSIQLATGI 87
           V +TGG+ G G + A + A+EGA + +               +   LEEA   ++  TG 
Sbjct: 13  VLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE-KTGR 71

Query: 88  EVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
           +  T   DVRD  AV   L  A    G +DV+V N G+   G      +       DV+ 
Sbjct: 72  KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHL--PVQAFADAFDVDF 129

Query: 144 IGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +G  + + AALP +     G   SI    S AG + 
Sbjct: 130 VGVINTVHAALPYLTS---GA--SIITTGSVAGLIA 160

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254

 Score =  105 bits (264), Expect = 2e-28
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K++ V +TG  SGIG A+A + A   + V  +    ++L +  Q ++   G EV    AD
Sbjct: 6   KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR-GMGKEVLGVKAD 64

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMI 150
           V     V+  +         +DVL  N G+      +   S +    ++ VN+  +F+  
Sbjct: 65  VSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSS 124

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A +P++ K+  G    I   +S AG  G
Sbjct: 125 RAVIPIMLKQGKG---VIVNTASIAGIRG 150

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score =  105 bits (264), Expect = 2e-28
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYS 93
           +  +   +TG + GIG A A     +GA+V+++  + E   + K ++ +     +     
Sbjct: 5   VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D   ++    +     G +D+LV N G        V +       + +N++     
Sbjct: 65  CDVADQQQLRDTFRKVVDHFGRLDILVNNAG--------VNNEKNWEKTLQINLVSVISG 116

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
               L  + K+  G    I  MSS AG + 
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMP 146

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255

 Score =  104 bits (263), Expect = 2e-28
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K +   +TG +SGIGL +A   A+ GA + +          A   I    G++   + AD
Sbjct: 3   KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIA-RHGVKAVHHPAD 59

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D   ++     A    G VD+LV N G+     +E   L+    +I +N+   FH  +
Sbjct: 60  LSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTR 119

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            ALP ++ R  G    I  ++S  G VG
Sbjct: 120 LALPGMRARNWG---RIINIASVHGLVG 144

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253

 Score =  104 bits (263), Expect = 3e-28
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 11/151 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +++   +TG   GIG A A   A+EGA V +   + E  E   + I  A G    + + D
Sbjct: 8   ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIV-ADGGTAISVAVD 66

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVP---GELEVQSLDEVRLMIDVNIIGSFH 148
           V D ++ K   D      G +D LV N  +F       L     +  +  + VN+ G+  
Sbjct: 67  VSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALW 126

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             +A    + KR  G   +I   SS A  + 
Sbjct: 127 CTRAVYKKMTKRGGG---AIVNQSSTAAWLY 154

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score =  104 bits (263), Expect = 3e-28
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V ITGG+ G+G   A QA   GARV +     E+     + +    G        D
Sbjct: 4   SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHLD 59

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   +  +  +  A    G VD LV N G+     LE +S++  R ++++N+ G F  +K
Sbjct: 60  VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMK 119

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +P +K    G   SI  +SS AG +G
Sbjct: 120 TVIPAMKDAGGG---SIVNISSAAGLMG 144

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250

 Score =  104 bits (262), Expect = 3e-28
 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG SSG GLA+A +    G RV+ L  S E LEE  ++   A   +V    ADV D 
Sbjct: 5   AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADE 64

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVP---GELEVQSLDEVRLMIDVNIIGSFHMIKA 152
             V  A+       G +DVLV N G+      G L    +++   ++ VN+ G F   +A
Sbjct: 65  GDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRA 124

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            LP +  +  G    I  ++S A  V 
Sbjct: 125 VLPHMLLQGAG---VIVNIASVASLVA 148

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283

 Score =  105 bits (264), Expect = 3e-28
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
                 ITG  SGIG A A   A +G  V  L R+  ++EE    I    G +     AD
Sbjct: 27  PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV-GAGGQAIALEAD 85

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           V D   ++ A+ +     G +D++V N G+  V   ++     E    I VN+ G+F  +
Sbjct: 86  VSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTL 145

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
              +P +K+ + GG  +I ++SS  G   
Sbjct: 146 HLTVPYLKQ-RGGG--AIVVVSSINGTRT 171

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score =  104 bits (263), Expect = 3e-28
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R   +TGG SGIG A A   AK GA V +   + +        I    G +      D
Sbjct: 26  NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI----GSKAFGVRVD 81

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V      ++ +++     G VDVLV N G    G +     +    ++ VN+ G F   K
Sbjct: 82  VSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSK 141

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +P++++   G   SI   +S      
Sbjct: 142 YVIPVMRRNGGG---SIINTTSYTATSA 166

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score =  105 bits (265), Expect = 4e-28
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE----EAKQSIQLATGIEVATYSAD 95
           + ITG SSG G   A   A  G RV    R          EA         +++ T   D
Sbjct: 8   ILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELD 67

Query: 96  VRDFD----AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V+       A+   + E G +DVL+ N G  V G  E  + ++   + D+N++ +  + +
Sbjct: 68  VQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNR 127

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           AALP ++++++G    +  +SS +   G
Sbjct: 128 AALPHMRRQKHG---LLIWISSSSSAGG 152

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score =  104 bits (261), Expect = 4e-28
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 10/151 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            DR + +TG S GIG   A   A+ GA V +L R+ EKL +    I   TG +   +  D
Sbjct: 11  NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILD 70

Query: 96  VRDFDA------VKTALDEAGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFH 148
           +    +       +        +D ++ N G+      +  Q+    + ++ VN+  +F 
Sbjct: 71  LLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFM 130

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + +A LPL+ K   G   S+   SS  G+ G
Sbjct: 131 LTQALLPLLLKSDAG---SLVFTSSSVGRQG 158

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269

 Score =  104 bits (262), Expect = 4e-28
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 18/148 (12%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            D+   +TGGSSGIGLA+     + GA+V  ++   +         +            D
Sbjct: 13  TDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK-----------ID 61

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V + + VK A+++     G +D+LV N G+     L +   +  R +IDVN+ GS+ M K
Sbjct: 62  VTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAK 121

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +P++      G  SI  ++S      
Sbjct: 122 YTIPVMLA-IGHG--SIINIASVQSYAA 146

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score =  104 bits (262), Expect = 5e-28
 Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATYS 93
            ++ V ITG S+GIG   A   A+EGA V+I  RS E+LEE +Q I  +  +  +V +  
Sbjct: 5   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRL----MIDVNIIG 145
           ADV   D     ++      G +DVLV N G  +P        D+        + +N+  
Sbjct: 65  ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 124

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQ-AGQVG 179
              M K   P +      G   I  +SS  AG   
Sbjct: 125 VIEMTKKVKPHLVAS--KG--EIVNVSSIVAGPQA 155

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score =  104 bits (261), Expect = 7e-28
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSA 94
            DR V ITGG SG+G A A + A EGA++S++  S E LE +K ++ + A   EV T  A
Sbjct: 12  TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 71

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHM 149
           DV D   V+  +       G +D    N G+       E  +  E   ++ +N+ G F  
Sbjct: 72  DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLG 131

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           ++  L +++++ +G    +   +S  G  G
Sbjct: 132 LEKVLKIMREQGSG---MVVNTASVGGIRG 158

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score =  103 bits (259), Expect = 9e-28
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 12/148 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TGG+SG+GL +      EGA+V+    +    ++    +    G        D
Sbjct: 5   QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRHD 60

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V         +       G ++VLV N G+ +PG++E   L++   ++ +N    F   +
Sbjct: 61  VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQ 120

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  +K+   GG  SI  M+S +  + 
Sbjct: 121 QGIAAMKE--TGG--SIINMASVSSWLP 144

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279

 Score =  103 bits (260), Expect = 1e-27
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +  F+TG SSGIGLA+A   A  G  V   AR  + +  A   ++ A G +V   S D
Sbjct: 23  RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR-AAGHDVDGSSCD 81

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   D V      A++  GP+ +LV + G    GE           ++D N+ G F + +
Sbjct: 82  VTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTR 141

Query: 152 AALPLIK-KRQNGGPASIALMSSQAGQVG 179
             L     +    G   I  ++S  G+ G
Sbjct: 142 EVLRAGGMREAGWG--RIVNIASTGGKQG 168

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255

 Score =  102 bits (258), Expect = 1e-27
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   +TG + G+G A A   A  GARV +       L E+  ++    G +    + D
Sbjct: 8   TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT-RKGYDAHGVAFD 66

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  A++ A  +       VD+L+ N G+     +    L+  + +ID N+  +F + +
Sbjct: 67  VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSR 126

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           +A   +  R +GG   I  + S   Q  
Sbjct: 127 SAAKRMIARNSGG--KIINIGSLTSQAA 152

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281

 Score =  103 bits (260), Expect = 1e-27
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 20/156 (12%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSG------------EKLEEAKQSIQLATGI 87
             ITGG+ G+G + A   A+ GA ++I  R              + L E    ++  TG 
Sbjct: 13  ALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVE-KTGR 71

Query: 88  EVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
              +   DV+D  A+++ + EA    G +D+ + N G+     L      +   +I  N+
Sbjct: 72  RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNL 131

Query: 144 IGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            G+F+ I A  P + KR  G    I  +SS  G   
Sbjct: 132 TGTFNTIAAVAPGMIKRNYG---RIVTVSSMLGHSA 164

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266

 Score =  103 bits (259), Expect = 1e-27
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 36  KDRHVFITGGS-SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           K + V +T  + +GIG   A +A  EGA V I      +L E +  +       V     
Sbjct: 21  KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVC 80

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV   +AV       +++AG +DVLV N G+     +   + +E   +++V +       
Sbjct: 81  DVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRAT 140

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +AAL   +   +GG   I   +S  G   
Sbjct: 141 RAALRYFRGVDHGG--VIVNNASVLGWRA 167

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score =  102 bits (257), Expect = 2e-27
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
                 +TG  SGIGL +    A  GAR+ ++ R    L+ A Q +        A   AD
Sbjct: 10  DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL---GAAVAARIVAD 66

Query: 96  VRDFDAVKTALDEA---GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           V D +A+  A  EA    PV +LV + G+    +         R ++ VN+ G F   +A
Sbjct: 67  VTDAEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRA 126

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
               +  R  G   +I  + S +G + 
Sbjct: 127 FGRAMVARGAG---AIVNLGSMSGTIV 150

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score =  102 bits (257), Expect = 2e-27
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +D+ V +TG S GIG A+A +   EG++V  L+       +                  D
Sbjct: 7   RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKY------------DHIECD 54

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V + D VK ++D      G + VLV N G+   G++E  S+ E R +IDVN+ G ++  K
Sbjct: 55  VTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASK 114

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A+P + + ++    SI  +SS    + 
Sbjct: 115 FAIPYMIRSRDP---SIVNISSVQASII 139

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260

 Score =  102 bits (257), Expect = 2e-27
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ++GG+ G+G +       EGA+V       E+ +     +             D
Sbjct: 6   TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----ADAARYVHLD 61

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V      K A+D A    G + VLV N G+   G +E  +L E + ++DVN+ G F  I+
Sbjct: 62  VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIR 121

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A +  +K+   G   SI  +SS  G  G
Sbjct: 122 AVVKPMKEAGRG---SIINISSIEGLAG 146

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score =  102 bits (257), Expect = 3e-27
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TG SSGIG A A   A+EGA+V + AR+G  L E    I    G E A  + D
Sbjct: 7   EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIA-GGGGEAAALAGD 65

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMI 150
           V D    +  ++ A    G +D    N G     GE+   S++  R  +D N+  +F   
Sbjct: 66  VGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAA 125

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           K  +P I     G   S+   SS  G   
Sbjct: 126 KYQVPAIAALGGG---SLTFTSSFVGHTA 151

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score =  102 bits (257), Expect = 4e-27
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATYS 93
             + V ITG S+GIG + A   AKEGA+V+I  R+ ++LEE KQ I  A     ++    
Sbjct: 25  SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEV--QSLDEVRLMIDVNIIGSF 147
           ADV +       ++      G +D+LV N G  +        Q ++  +    +N     
Sbjct: 85  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 144

Query: 148 HMIKAALPLIKKRQNGGPASIALMSSQ-AGQVG 179
            M +     + K    G   I  +SS  AG   
Sbjct: 145 EMTQKTKEHLIKT--KG--EIVNVSSIVAGPQA 173

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258

 Score =  101 bits (255), Expect = 4e-27
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 9/152 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSA 94
           K + V ITG S GIGLA A   A+ GA+V +   ++   ++E   S++ A G + A ++A
Sbjct: 6   KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR-ADGGDAAFFAA 64

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHM 149
           D+   +A +  +DE     G +DVL+ N G  V    L          ++D NI      
Sbjct: 65  DLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMT 124

Query: 150 IKAALPLIKKRQNGGPA--SIALMSSQAGQVG 179
            K ALP +           ++    S AG  G
Sbjct: 125 TKFALPHLAAAAKASGQTSAVISTGSIAGHTG 156

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256

 Score =  101 bits (255), Expect = 4e-27
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            D    +TG ++GIG A+A   AK GA V +     E  E    +I+   G +      +
Sbjct: 11  NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR-QAGGKAIGLECN 69

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D        K ALD+ G + VLV N G   P   ++  + +      +N+   F + +
Sbjct: 70  VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDM-PMSDFEWAFKLNLFSLFRLSQ 128

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A P ++K   G   +I  +SS AG+  
Sbjct: 129 LAAPHMQKAGGG---AILNISSMAGENT 153

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score =  101 bits (254), Expect = 5e-27
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 10/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           KD+   ITGG++GIG A+A + A EGA ++I         EA+ +I+   G  V T   D
Sbjct: 6   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIR-NLGRRVLTVKCD 62

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V     V    K  +   G  D+LV N G++     +  + ++ +   ++N+   F M K
Sbjct: 63  VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAK 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A +P +K+   G    I  ++S    + 
Sbjct: 123 AFVPGMKRNGWG---RIINLTSTTYWLK 147

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score =  101 bits (254), Expect = 5e-27
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 8/149 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSA 94
           + + V ITG S+G+G ++A + A E A+V +  RS  ++     + I+   G E      
Sbjct: 6   EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK-KVGGEAIAVKG 64

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV     V   +  A    G +DV++ N G+  P      SL +   +ID N+ G+F   
Sbjct: 65  DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A+    +    G  ++  MSS   ++ 
Sbjct: 125 REAIKYFVENDIKG--TVINMSSVHEKIP 151

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score =  101 bits (254), Expect = 7e-27
 Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 15/151 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE--VATYSADVR 97
             ITG S+GIG A A   A+EGA+V+I  R  E+LEE +Q I  A   E  V +  ADV 
Sbjct: 9   AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGE----LEVQSLDEVRLMIDVNIIGSFHM 149
                   L       G +D+LV N G  +P         QS++     +++N+     +
Sbjct: 69  TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIAL 128

Query: 150 IKAALPLIKKRQNGGPASIALMSS-QAGQVG 179
            K A+P +      G   I  +SS  +G   
Sbjct: 129 TKKAVPHLSST--KG--EIVNISSIASGLHA 155

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score =  101 bits (253), Expect = 7e-27
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + R V +TGG+ GIG  +A   A+ GA V++  RS   ++     +      +V     D
Sbjct: 9   QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTD 68

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D          A++E G +DV+  N GVF    L   + +++  +  VN+ G+F+ ++
Sbjct: 69  VSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQ 128

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQV 178
           A L  +    +G    + L SS  G +
Sbjct: 129 ACLDALIASGSG---RVVLTSSITGPI 152

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266

 Score =  101 bits (253), Expect = 8e-27
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TG + GIG A+       GARV++  R+   +                    D
Sbjct: 27  EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD------------LHLPGD 74

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +R+               G +D++V N GV   G +   +  +  L + VN+   F + +
Sbjct: 75  LREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICR 134

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           AA+PL+     G   +I  ++S  G   
Sbjct: 135 AAIPLMAAAGGG---AIVNVASCWGLRP 159

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270

 Score =  100 bits (251), Expect = 2e-26
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 14/149 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V +TGG  GIG  +       GARV I  +        +Q +  A  I       D
Sbjct: 8   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFIL-----CD 62

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMI 150
           V   D VKT + E     G +D +V N G   P +  E  S    R ++++N++G++ + 
Sbjct: 63  VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 122

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           K ALP +  R++ G  ++  +SS  G +G
Sbjct: 123 KLALPYL--RKSQG--NVINISSLVGAIG 147

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score =  100 bits (251), Expect = 2e-26
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   ITG  SG G  +A + AK GA+V I+ R     E     I    G      +AD
Sbjct: 8   EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI----GDAALAVAAD 63

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           +     V  A++ A    G VD+LV N G+   P   E+   +E   ++ VN+ G + M 
Sbjct: 64  ISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMT 123

Query: 151 KAALPLIKKRQNGG-PASIALMSSQAGQVG 179
              +P  K+    G    I  ++S      
Sbjct: 124 SKLIPHFKENGAKGQECVILNVASTGAGRP 153

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 99.6 bits (249), Expect = 3e-26
 Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 21/161 (13%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K R   +TG SSG+G A+    A+EGA V  L       EE    +    G  V   +A
Sbjct: 5   LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL----GAAVRFRNA 60

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGEL----EVQSLDEVRLMIDVNIIGS 146
           DV +      AL  A    G V  LV   G     ++       +LD     + VN+IG+
Sbjct: 61  DVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGT 120

Query: 147 FHMIKAALPLIKKRQNGGP---------ASIALMSSQAGQV 178
           F+MI+ A  ++ + +             ASIA    Q GQ 
Sbjct: 121 FNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQA 161

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277

 Score =  100 bits (250), Expect = 3e-26
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
                 +TG +SGIGL +A +  KEG RV + AR  E L    + ++   G+E    + D
Sbjct: 21  DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR-EAGVEADGRTCD 79

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           VR    +       ++  GPVDVLV N G    G     + +    +++ N+ G F + K
Sbjct: 80  VRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTK 139

Query: 152 AALPLIK--KRQNGGPASIALMSSQAGQVG 179
             L      +R  G    I  ++S  G+ G
Sbjct: 140 QVLKAGGMLERGTG---RIVNIASTGGKQG 166

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 99.1 bits (248), Expect = 4e-26
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 4/132 (3%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + R   +TGGS G+G  +A   A+ G  V + +R+ E+  EA Q +    G+E   +  D
Sbjct: 20  RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCD 79

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V +++ VK  L+      G +D +V   G+      E   LDE R +I+VN+ G++++ +
Sbjct: 80  VSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCR 139

Query: 152 AALPLIKKRQNG 163
            A  L+++  N 
Sbjct: 140 EAFSLLRESDNP 151

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259

 Score = 99.1 bits (248), Expect = 4e-26
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSA 94
            +R + + G    IG A A + A+EGA V +    + E    A   I+   G       A
Sbjct: 7   TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE-KLGRSALAIKA 65

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHM 149
           D+ +   V+ A+  A    G +  LV   G  +    +          ++DVN+   F  
Sbjct: 66  DLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLT 125

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            K ALP + K   GG  +I   SSQAG+ G
Sbjct: 126 AKTALPKMAK---GG--AIVTFSSQAGRDG 150

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241

 Score = 98.6 bits (246), Expect = 6e-26
 Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 11/145 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + R V + GG   +G             V+ +     +   A   +++         +  
Sbjct: 6   EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSF-----TEQ 60

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
                A    L     VD ++   G +  G            LM   +I  S      A 
Sbjct: 61  ADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 120

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
             +K+   GG   + L  ++A   G
Sbjct: 121 KHLKE---GG--LLTLAGAKAALDG 140

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327

 Score =  100 bits (250), Expect = 6e-26
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKE---GARVSILARSGEKLE--EAKQSIQLATGIEVATYSA 94
           V ITG SSGIGL LA + A +     +V    R  +                  + T   
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 95  DVRDFDAVKTALDEA--GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           DVRD  +V  A +    G VDVLV N G+ + G LE    D V  ++DVN++G+  M++A
Sbjct: 65  DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            LP +K+R +G    + +  S  G +G
Sbjct: 125 FLPDMKRRGSG---RVLVTGSVGGLMG 148

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score = 99.2 bits (248), Expect = 7e-26
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R V +TGG+ GIG  +A   A+ GA V++ ARS  +L      +       V     D
Sbjct: 40  SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLD 99

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  +     +T +D  G +DV+  N G+F    L+  + +++  ++DVN+ G+ + ++
Sbjct: 100 VSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQ 159

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQV 178
           A L  +     G    + L SS  G V
Sbjct: 160 ACLAPLTASGRG---RVILTSSITGPV 183

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 98.5 bits (246), Expect = 1e-25
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 16/157 (10%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
            +     ++GG+ G+G A   +   +G  V I   + EK +     +    G      S 
Sbjct: 28  FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL----GNRAEFVST 83

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGEL-----EVQSLDEVRLMIDVNIIG 145
           +V   D+V  A++ A         +V + G  V   +         +      ID+ + G
Sbjct: 84  NVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNG 143

Query: 146 SFHMIKAALPLIKKRQ---NGGPASIALMSSQAGQVG 179
           ++++ +     I   +   NG   ++ L +S AG  G
Sbjct: 144 TYNVARLVAASIAAAEPRENGERGALVLTASIAGYEG 180

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 98.1 bits (245), Expect = 1e-25
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 23/163 (14%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K     ITGG+SG+GLA A +   +GA   +L       E   + +    G       A
Sbjct: 10  VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL----GNNCVFAPA 65

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGEL------EVQSLDEVRLMIDVNII 144
           DV     V+TAL  A    G VDV V   G+ V  +       +  +L++ + ++DVN++
Sbjct: 66  DVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLM 125

Query: 145 GSFHMIKAALPLIKKRQNGGP---------ASIALMSSQAGQV 178
           G+F++I+     + + +             AS+A    Q GQ 
Sbjct: 126 GTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQA 168

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score = 98.0 bits (245), Expect = 2e-25
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +++   ITG   GIGL  +   A+ GARV +       L  A  S+    G     +  D
Sbjct: 10  ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV----GRGAVHHVVD 65

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEV--QSLDEVRLMIDVNIIGSFHM 149
           + +  +V+  +D      G +D++  N     P ++ V   ++D       VN  G+  M
Sbjct: 66  LTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLM 125

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            K A+P +     G   +I  +SS      
Sbjct: 126 CKYAIPRLISAGGG---AIVNISSATAHAA 152

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score = 97.2 bits (243), Expect = 2e-25
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSA 94
           +++   +TG S G+G A A + A+ G  + I  ARS +   E  + I+   G++V    A
Sbjct: 3   QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE-KLGVKVLVVKA 61

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           +V     +K    +     G +DV V N    V   +           +++N        
Sbjct: 62  NVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCA 121

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A  L++K   G    I  +SS      
Sbjct: 122 QEAAKLMEKNGGG---HIVSISSLGSIRY 147

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260

 Score = 97.2 bits (243), Expect = 3e-25
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 17/148 (11%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + + V ITG S GIG  L         RV   +RS +           +   ++ T + D
Sbjct: 27  QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP----------SADPDIHTVAGD 76

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +   +     + E     G +D LV N GVF+       + ++    + VN+ G FH+ +
Sbjct: 77  ISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQ 136

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A   + K+ +G    I  +++      
Sbjct: 137 RAAAEMLKQGSG---HIVSITTSLVDQP 161

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score = 96.4 bits (241), Expect = 4e-25
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI---LARSGEKLEEAKQSIQLATGIEVA 90
            +K++ + I GG   +G   A   A E   + +    A+  +   + K  ++   G +VA
Sbjct: 8   DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE-DQGAKVA 66

Query: 91  TYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
            Y +D+ + + V    D A    G VD+ +   G  +   +   S  E   M  +N   +
Sbjct: 67  LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVA 126

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +  IK A   +      G   I  +++      
Sbjct: 127 YFFIKQAAKHMNP---NG--HIITIATSLLAAY 154

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257

 Score = 95.8 bits (239), Expect = 7e-25
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 25/162 (15%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           I+D    +TGG+SG+GLA   +    GA+V +L   GE +           G      +A
Sbjct: 7   IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVA-------DLGDRARFAAA 59

Query: 95  DVRDFDAVKTALDEA---GPVDVLVVNQGVFVPGEL----EVQSLDEVRLMIDVNIIGSF 147
           DV D  AV +ALD A   G + ++V   G      +     V SL   R ++D+N++GSF
Sbjct: 60  DVTDEAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119

Query: 148 HMIKAALPLIKKRQNGGP-----------ASIALMSSQAGQV 178
           ++++ A   I K +  GP           AS+A    Q GQ 
Sbjct: 120 NVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQA 161

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272

 Score = 96.1 bits (240), Expect = 9e-25
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
           V +TGGS GIG A+   AA++G RV +  A + E  +    +I   +G E      DV +
Sbjct: 29  VLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAIT-ESGGEAVAIPGDVGN 87

Query: 99  FDAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
              +           G +D LV N G+      ++  S++ +  M+ VN+ GS      A
Sbjct: 88  AADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEA 147

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
           +  + +  +G   +I  +SS A  +G
Sbjct: 148 VRRMSRLYSGQGGAIVNVSSMAAILG 173

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280

 Score = 95.7 bits (239), Expect = 1e-24
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSA 94
                 +TGG  GIGL +A   A  G  ++I      E +      +    G  V    A
Sbjct: 28  ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS-GLGARVIFLRA 86

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGV--FVPGELEVQSLDEVRLMIDVNIIGSFH 148
           D+ D  + +  +D      G +D LV N G+   V  +      +    ++ VN+ G+  
Sbjct: 87  DLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVF 146

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             +A L  +         SI  ++S +  + 
Sbjct: 147 FTQAVLKAMLASDARASRSIINITSVSAVMT 177

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score = 93.9 bits (234), Expect = 1e-24
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 24/140 (17%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + + G S  +G A+  +  ++ A V    R    +                  + D+ + 
Sbjct: 6   ILLIGASGTLGSAVK-ERLEKKAEVITAGRHSGDV------------------TVDITNI 46

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK 159
           D++K   ++ G VD +V   G      L   + ++  + I   + G  +++   +  +  
Sbjct: 47  DSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND 106

Query: 160 RQNGGPASIALMSSQAGQVG 179
           +      S  L +    +  
Sbjct: 107 K-----GSFTLTTGIMMEDP 121

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273

 Score = 95.3 bits (238), Expect = 2e-24
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R   +TG  SGIG A+AH  A+ GA V    R+ + ++E    I    G       AD
Sbjct: 30  AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIA-DGGGSAEAVVAD 87

Query: 96  VRDFDAVKT---ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           + D +        L     VDVLV N G+      E  SL   R ++ VN+  ++ + ++
Sbjct: 88  LADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRS 147

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
               +    +G    I  ++S     G
Sbjct: 148 FGTAMLAHGSG---RIVTIASMLSFQG 171

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250

 Score = 94.5 bits (236), Expect = 2e-24
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 18/148 (12%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             ++V++TG   GIG A A    + GA+V+   ++                   AT   D
Sbjct: 6   SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----------QEQYPFATEVMD 54

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D   V    +  L E   +D LV   G+   G  +  S ++ +    VN+ G+F++ +
Sbjct: 55  VADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQ 114

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +   ++++ G   +I  ++S A    
Sbjct: 115 QTMNQFRRQRGG---AIVTVASDAAHTP 139

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247

 Score = 94.5 bits (236), Expect = 2e-24
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   +TG + GIG A+A + A +GA V +   + E  + A  SI    G +    +AD
Sbjct: 5   AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI----GKKARAIAAD 60

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D  +V           G +D+LV N  +      +   LD  R +IDVN+ G+F + +
Sbjct: 61  ISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTR 120

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A    ++     G   +  ++S     G
Sbjct: 121 AGTDQMRAAGKAG--RVISIASNTFFAG 146

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score = 94.3 bits (235), Expect = 2e-24
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 11/145 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
               V + GG   +G A+     K G  V  +  S    ++A  +I +            
Sbjct: 2   SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN--DQADSNILVDGNKNWTEQEQS 59

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           + +  A   +  +   VD +    G +  G       +    LMI  ++  S    K A 
Sbjct: 60  ILEQTA---SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLAT 116

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
             +K    GG   + L  + A    
Sbjct: 117 THLKP---GG--LLQLTGAAAAMGP 136

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276

 Score = 94.7 bits (236), Expect = 2e-24
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 40  VFITGGSSGIGLALAHQ-AAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
             +TGG+ GIGLA+           V + AR   + + A Q +Q A G+    +  D+ D
Sbjct: 7   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ-AEGLSPRFHQLDIDD 65

Query: 99  FDAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
             +++        E G +DVLV N G+            +  + +  N  G+  +    L
Sbjct: 66  LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELL 125

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           PLIK         +  +SS      
Sbjct: 126 PLIKP-----QGRVVNVSSIMSVRA 145

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score = 93.4 bits (233), Expect = 6e-24
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 14/148 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
               + ITG S  +GL  A +  + G RV I  R+                        D
Sbjct: 26  SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTE------LRQAGAVALYGD 79

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
                 +   +D        +  +V N   ++      +  D    M  V+++  + +  
Sbjct: 80  FSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPG-EEADNFTRMFSVHMLAPYLINL 138

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
              PL+   +      I  +S    + G
Sbjct: 139 HCEPLLTASEVA---DIVHISDDVTRKG 163

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score = 92.6 bits (231), Expect = 1e-23
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 15/145 (10%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           I+D+ V +   S GIG A+A   ++EGA V+I AR+ E L+ +     +           
Sbjct: 17  IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVV----------C 66

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           D+R    +    ++   VD+LV+N G    G  +  + ++ +  ID   +    +++  L
Sbjct: 67  DLR--KDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYL 124

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
           P +K++  G    I  ++S +    
Sbjct: 125 PAMKEKGWG---RIVAITSFSVISP 146

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 13/151 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI--LARSGEKLEEAKQSIQLATGIEVATYS 93
           KDR   +TGG SGIG A A   A+EGA V+I  L    E  ++ K  I+   G +     
Sbjct: 48  KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIE-ECGRKAVLLP 106

Query: 94  ADVRDF----DAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFH 148
            D+ D       V  A +  G +D+L +  G       ++  + ++ +    VN+   F 
Sbjct: 107 GDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFW 166

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + + A+PL+ K   G   SI   SS      
Sbjct: 167 ITQEAIPLLPK---GA--SIITTSSIQAYQP 192

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
              ++   +TG S GIG A+A + A +G  V I  A      EE    I+ A G +  T 
Sbjct: 24  METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIE-AAGGKALTA 82

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            ADV D  AV+     A    G VDVLV N G+     +          +I VN+ G+F+
Sbjct: 83  QADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFN 142

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            ++ A   +   + GG   I  MS+    + 
Sbjct: 143 TLREAAQRL---RVGG--RIINMSTSQVGLL 168

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score = 92.2 bits (230), Expect = 3e-23
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R   +TGGS GIG  +A    + GARV I AR  E   +    +  A G +     AD
Sbjct: 28  AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS-AYG-DCQAIPAD 85

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +      +            +D+LV N G      LE   +     ++ +N+   F  I+
Sbjct: 86  LSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQ 145

Query: 152 AALPLIKKR-QNGGPASIALMSSQAGQVG 179
             LPL+++      PA +  + S AG   
Sbjct: 146 QLLPLLRRSASAENPARVINIGSVAGISA 174

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278

 Score = 91.5 bits (228), Expect = 4e-23
 Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             ITGG+ GIG   A    + GA+V I   + +  ++   +I   +   ++    DV   
Sbjct: 19  AIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI--GSPDVISFVHCDVTKD 76

Query: 100 DAVKTALDEA----GPVDVLVVNQGVF--VPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           + V+  +D      G +D++  N GV    P  +     ++ + ++D+N+ G+F + K A
Sbjct: 77  EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHA 136

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
             ++   + G   SI   +S +    
Sbjct: 137 ARVMIPAKKG---SIVFTASISSFTA 159

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263

 Score = 91.4 bits (228), Expect = 4e-23
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + + +TG +SGIG A     A+EGA +  + R    L EA  ++      E     AD
Sbjct: 5   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL----EAEAIAVVAD 60

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  AV      AL+E G +  +    GV          L+    ++ VN+ GSF + +
Sbjct: 61  VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVAR 120

Query: 152 AALPLIKKRQNGGPASIALMSSQAG 176
            A  ++++   GG  S+ L  S AG
Sbjct: 121 KAGEVLEE---GG--SLVLTGSVAG 140

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score = 91.4 bits (228), Expect = 5e-23
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSA 94
           K ++V ITGG SGIG A++   AKEGA ++I          E KQ ++   G++      
Sbjct: 46  KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVE-KEGVKCVLLPG 104

Query: 95  DVRDF----DAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHM 149
           D+ D     D V+  + + G +++LV N     P + LE  + +++     +NI   FH+
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHV 164

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            KAAL  +K+   G    I   +S     G
Sbjct: 165 TKAALSHLKQ---GD--VIINTASIVAYEG 189

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288

 Score = 91.2 bits (227), Expect = 6e-23
 Identities = 30/168 (17%), Positives = 48/168 (28%), Gaps = 26/168 (15%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSA 94
           +     +TG +  IG A+A +  + G RV I    S E        +            A
Sbjct: 22  EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQA 81

Query: 95  DVRDFDA--------VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLM-------- 138
           D+ + +         + +     G  DVLV N   F P  L     ++            
Sbjct: 82  DLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVA 141

Query: 139 --IDVNIIGSFHMIKAALPLIKK-----RQNGGPASIALMSSQAGQVG 179
             I  N I  F +  +     K        +    SI  +        
Sbjct: 142 ELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNL--SIVNLCDAMVDQP 187

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score = 90.8 bits (226), Expect = 7e-23
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 16/155 (10%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P+  +   +TG S GIG  +A Q  K GA V I  R  + L    Q  Q + G +     
Sbjct: 2   PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ-SLGGQCVPVV 60

Query: 94  ADVRDFDAVK-----TALDEAGPVDVLVVNQGVFVPGELEV-------QSLDEVRLMIDV 141
            D      V+        ++ G +DVLV N    V   L                 + +V
Sbjct: 61  CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120

Query: 142 NIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG 176
            + G +        L+     G    I ++SS   
Sbjct: 121 GLRGHYFCSVYGARLMVPAGQG---LIVVISSPGS 152

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242

 Score = 89.6 bits (223), Expect = 1e-22
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 29/158 (18%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           +R   +TGG+SG+G A A      G RV +L    E             G ++     DV
Sbjct: 2   ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-------------GEDLIYVEGDV 48

Query: 97  RDFDAVKTALDEA---GPVDVLVVNQGVFVPGEL----EVQSLDEVRLMIDVNIIGSFHM 149
              + V+ A+  A    P+  +V   GV +  ++        L+  R +++VN++G+F++
Sbjct: 49  TREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNV 108

Query: 150 IKAALPLIKKRQNGGP---------ASIALMSSQAGQV 178
           ++ A   +++               AS+A    Q GQ 
Sbjct: 109 LRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQA 146

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244

 Score = 89.1 bits (222), Expect = 2e-22
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 9/141 (6%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +T      G A      ++G  V     S     E ++      G          R    
Sbjct: 6   VTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPER---L 62

Query: 102 VKTALDEAGPVDVLVVNQGVFVPGE---LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK 158
           V   L     +D +V N  +  P     LE  S  ++R M +   I    ++++A+  ++
Sbjct: 63  VDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLR 122

Query: 159 KRQNGGPASIALMSSQAGQVG 179
                   S+  ++S  G+  
Sbjct: 123 AAGGA---SVIFITSSVGKKP 140

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 11/154 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             RH  IT G+ G+G  +  +   +G  V++   S     E  +         +    AD
Sbjct: 6   FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQAD 65

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHM 149
           V   + +    + A+   G +D L+ N G +V    +L     DE   MI  N+   FH+
Sbjct: 66  VTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHL 125

Query: 150 IKAALPLIKKRQNG-----GPASIALMSSQAGQV 178
           +K  +P+++K+  G     G            + 
Sbjct: 126 LKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRS 159

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score = 89.2 bits (222), Expect = 3e-22
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
            +  +  F+TGGS GIG A+A + A EGA V++    + E+ +     I+   G      
Sbjct: 28  SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIE-QAGGRAVAI 86

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD RD +A++ A+ E     G +D+LV + G++    LE  ++ +   ++ VN    F 
Sbjct: 87  RADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFV 146

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQ-AGQVG 179
            I++A   +    +GG   I  + S  A  V 
Sbjct: 147 AIRSASRHL---GDGG--RIITIGSNLAELVP 173

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score = 89.6 bits (223), Expect = 3e-22
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 11/151 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
            ++ +   +TG   GIG  +A +  + G +V +  A S E  EE   +I+   G + A  
Sbjct: 26  SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK-KNGSDAACV 84

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            A+V   + +    +EA    G +D++  N GV   G ++  + +E   +  +N  G F 
Sbjct: 85  KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 144

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + + A   +   + GG   + LM S  GQ  
Sbjct: 145 VAREAYKHL---EIGG--RLILMGSITGQAK 170

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score = 88.8 bits (221), Expect = 5e-22
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
           P+  +    TG   GIG  +A +  + GA V +    S +  EE    ++   G +    
Sbjct: 18  PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK-KLGAQGVAI 76

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD+     V    D+A    G +D ++ N G+ V  +    + +    + ++N  G F 
Sbjct: 77  QADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFF 136

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQ 177
           + +  L      + GG   I L SS A  
Sbjct: 137 VAQQGLKHC---RRGG--RIILTSSIAAV 160

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285

 Score = 88.8 bits (221), Expect = 5e-22
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 8/148 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +++   +TG   GIG  +A   AK  + V  ++R+ +  +     I+ + G E + Y+ D
Sbjct: 43  ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK-SFGYESSGYAGD 101

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   + +       L E   VD+LV N G+           DE   ++  N+   F++ +
Sbjct: 102 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 161

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
                +   + G    I  +SS  G  G
Sbjct: 162 PISKRMINNRYG---RIINISSIVGLTG 186

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score = 87.6 bits (218), Expect = 1e-21
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 11/149 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
            +  +   +TG   GIG A+A    + GA+V +  A S +  E+    I+ A G +    
Sbjct: 15  RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIK-ALGSDAIAI 73

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            AD+R    +    D+A    G +D+ V N GV   G L+  + +E   +  +N  G F 
Sbjct: 74  KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFF 133

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQ 177
           + + A   + +   GG   I L SS   +
Sbjct: 134 VAREAYRHLTE---GG--RIVLTSSNTSK 157

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248

 Score = 86.8 bits (216), Expect = 2e-21
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TG + GIG A+A + A  G+ V I   SGE+ +   + I    G++      +
Sbjct: 6   QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMN 65

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +   +++    +   +    +D+LV N G+         SL +   ++ VN+ G+F + +
Sbjct: 66  LLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQ 125

Query: 152 AAL-PLIKKRQNGGPASIALMSSQAGQVG 179
            +L  +IK+R       I  +SS  G  G
Sbjct: 126 NSLRKMIKQRW----GRIVNISSVVGFTG 150

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 86.2 bits (214), Expect = 3e-21
 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 21/159 (13%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILA--RSGEKLEEAKQSIQLATGIEVATYSAD 95
             V +TG + GIGL L  Q  K+     I+A  R  EK  E K          V      
Sbjct: 4   GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS----IKDSRVHVLPLT 59

Query: 96  VRDFDAVKTALDEAG------PVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFH 148
           V    ++ T + + G       + +L+ N GV +  G     +   +   +DVN      
Sbjct: 60  VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119

Query: 149 MIKAALPLIKK--------RQNGGPASIALMSSQAGQVG 179
           + +  LPL+K         + +   A++  +SS  G + 
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT 158

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254

 Score = 86.1 bits (214), Expect = 3e-21
 Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA 101
           +T      G+  A + ++ G  V+    S ++ +E +                       
Sbjct: 6   VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-------AFAETYPQLKPMSEQE 58

Query: 102 V----KTALDEAGPVDVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSFHMIKAALPL 156
                +      G VDVLV N       +   + ++++ R  ++   I  F ++ A    
Sbjct: 59  PAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQ 118

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           +KKR++G    I  ++S      
Sbjct: 119 MKKRKSG---HIIFITSATPFGP 138

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239

 Score = 85.6 bits (213), Expect = 4e-21
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 15/146 (10%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           +R   +TGGS GIG A+A      G RV+I +R+ E+  +          +       D+
Sbjct: 2   ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQ---------SLGAVPLPTDL 52

Query: 97  RDFDA---VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
              D    VK AL+  G + VLV    V V       S +E R ++ +++  +F + +AA
Sbjct: 53  EKDDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAA 112

Query: 154 LPLIKKRQNGGPASIALMSSQAGQVG 179
            P + +   G    +  + S      
Sbjct: 113 APHMAEAGWG---RVLFIGSVTTFTA 135

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270

 Score = 85.7 bits (213), Expect = 7e-21
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   +TG S GIG A+A + A+ GA V   A +    E    + +   G+E      +
Sbjct: 27  DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK-QAGLEGRGAVLN 85

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  AV    ++ L E G ++VLV N G+           DE   +ID N+   F + +
Sbjct: 86  VNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSR 145

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A L  + K + G    I  ++S  G  G
Sbjct: 146 AVLRPMMKARGG---RIVNITSVVGSAG 170

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249

 Score = 84.5 bits (210), Expect = 1e-20
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG SSGIG A+A    K G++V I   + EKL+    ++             +
Sbjct: 13  TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL----KDNYTIEVCN 68

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           + + +     + +   +D+LV N G+            +   +ID+N+  +F + + A+ 
Sbjct: 69  LANKEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIK 128

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            + +++ G    I  +SS  G  G
Sbjct: 129 KMIQKRYG---RIINISSIVGIAG 149

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311

 Score = 85.4 bits (211), Expect = 1e-20
 Identities = 38/179 (21%), Positives = 64/179 (35%), Gaps = 38/179 (21%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K R   +TGG+ GIG  +  Q +  G  V +  R   K  EA + ++ +    V  +  D
Sbjct: 11  KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLD 70

Query: 96  VRDFDAVKTAL-----DEAGPVDVLVVNQGVFVPG------------------------- 125
           V D  A  ++L        G +D+LV N GV                             
Sbjct: 71  VTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYE 130

Query: 126 -----ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
                EL  ++ +     + +N  G   + +  +PL++         I  +SS  G + 
Sbjct: 131 KPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQL---SDSPRIVNVSSSTGSLK 186

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245

 Score = 84.1 bits (209), Expect = 2e-20
 Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 18/152 (11%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           KD+ V ITG + GIG A     AKEGAR+         L EA      A  +       D
Sbjct: 4   KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA------AEAVGAHPVVMD 57

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  +V      AL   G +D +V   G+          L++  L++ VN+ GSF + K
Sbjct: 58  VADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAK 117

Query: 152 AALPLIKKRQNGGPASIALMSS-----QAGQV 178
           AA   ++++  G   SI L +S       GQ 
Sbjct: 118 AASEAMREKNPG---SIVLTASRVYLGNLGQA 146

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247

 Score = 84.1 bits (209), Expect = 2e-20
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            ++   +TG S GIG  +AH  A +GA V   A S    E+ + S++   G +      +
Sbjct: 4   NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK-EKGFKARGLVLN 62

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D +++         E   +D+LV N G+     +   S DE + +I+ N+   F M K
Sbjct: 63  ISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSK 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  + K++ G    I  + S  G  G
Sbjct: 123 ECVRGMMKKRWG---RIISIGSVVGSAG 147

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269

 Score = 84.2 bits (209), Expect = 2e-20
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSA 94
            DR   +TG S GIG A+A + A  GA+V++  A S    +E   +I  A G E     A
Sbjct: 27  TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIA-AAGGEAFAVKA 85

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV     V       ++  G +DVLV N G+     L     D+ + ++D+N+ G F   
Sbjct: 86  DVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCS 145

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +AA  ++ K+++G    I  ++S  G++G
Sbjct: 146 RAAAKIMLKQRSG---RIINIASVVGEMG 171

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246

 Score = 83.7 bits (208), Expect = 2e-20
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSA 94
             +   +TG S GIG ++A Q A+EG  V++  A S EK E   + I+ A G++     A
Sbjct: 3   MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIK-AKGVDSFAIQA 61

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           +V D D V    K  + + G +DVLV N G+     L      E   +ID N+ G F+ I
Sbjct: 62  NVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCI 121

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A P + ++++G   +I  +SS  G VG
Sbjct: 122 QKATPQMLRQRSG---AIINLSSVVGAVG 147

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269

 Score = 84.2 bits (209), Expect = 3e-20
 Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R  F+TGG  G+G A++ +    G  V++               +   G +   Y+ D
Sbjct: 24  AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVD 83

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V DF++     +  L + G VDVL+ N G+         +  +   ++  ++   F++ K
Sbjct: 84  VADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTK 143

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  + +R+ G    I  + S  G  G
Sbjct: 144 QFIAGMVERRFG---RIVNIGSVNGSRG 168

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 86.3 bits (214), Expect = 3e-20
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 14/157 (8%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI---------LARSGEKLEEAKQSIQL 83
           +  KD+ V ITG   G+G   + + AK GA+V +            + +  +     I  
Sbjct: 4   VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVK 63

Query: 84  ATGIEVATYSADVRDFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
             G+ VA Y  +V D D  V+TA+   G V V++ N G+     ++  +  + +L+IDV+
Sbjct: 64  NGGVAVADY-NNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVH 122

Query: 143 IIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + G+F + KAA P  +K++ G    I   SS AG  G
Sbjct: 123 LNGAFAVTKAAWPYFQKQKYG---RIVNTSSPAGLYG 156

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 27  RPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG 86
                 + +KD+ V ITG  +G+G   A   AK GA+V +         +    I+ A G
Sbjct: 312 ASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA--TKTVDEIKAAGG 369

Query: 87  IEVATYSADVRDFDA--VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
                   DV       +K  +D+ G +D+LV N G+         S  E   +  V++I
Sbjct: 370 EAWPDQ-HDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLI 428

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           G+F++ + A P   + +  G   I  ++S +G  G
Sbjct: 429 GTFNLSRLAWPYFVE-KQFG--RIINITSTSGIYG 460

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264

 Score = 83.8 bits (208), Expect = 3e-20
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ------LATGIEV 89
           +     +TG  SGIG A++ + A EGA V+         +E  + +              
Sbjct: 6   RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65

Query: 90  ATYSADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNII 144
           A + ADV +  A +  L++       P  V+V   G+     L   S D+   +I VN+ 
Sbjct: 66  AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLK 125

Query: 145 GSFHMIKAAL-PLIKKRQNGGPASIALMSSQAGQVG 179
           G+F + +AA   L+     G   SI  +SS  G+VG
Sbjct: 126 GTFLVTQAAAQALVSNGCRG---SIINISSIVGKVG 158

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244

 Score = 83.3 bits (207), Expect = 4e-20
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 9/145 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
           V +TG S GIG A+A    K G +V +  ARS +  EE  + I+ A G +  T+  DV  
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE-AYGGQAITFGGDVSK 62

Query: 99  FDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
              V    KTA+D  G +DV+V N G+     L      +   +ID+N+ G F   +AA 
Sbjct: 63  EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAAT 122

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
            ++ K++ G    I  ++S  G +G
Sbjct: 123 KIMMKKRKG---RIINIASVVGLIG 144

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247

 Score = 83.3 bits (207), Expect = 4e-20
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSA 94
           K +   +TG S G+G A+A +    GA + +  + +   L+   +  + A GI V     
Sbjct: 4   KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFK-AAGINVVVAKG 62

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV++ + V    KTA+D  G +D+LV N G+     +   S  +   +++ N+  ++   
Sbjct: 63  DVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCT 122

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KA   ++ K+++G    I  ++S AG +G
Sbjct: 123 KAVSKIMLKQKSG---KIINITSIAGIIG 148

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246

 Score = 82.9 bits (206), Expect = 4e-20
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSA 94
           K +   +TG S GIG A+A   AK+GA V +  A + +K  E    I+   G +     A
Sbjct: 3   KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIK-KLGSDAIAVRA 61

Query: 95  DVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV + + V    K  +D  G VD+LV N GV     L     +E   +I+ N+ G F   
Sbjct: 62  DVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCT 121

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KA    + ++++G    I  ++S  G  G
Sbjct: 122 KAVSRFMMRQRHG---RIVNIASVVGVTG 147

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 83.2 bits (206), Expect = 5e-20
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 38  RHVFITGGSSGIGLALAHQ---AAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
             + ITG + G+GL L        +    +    R+ E+ +E +   +  + I +     
Sbjct: 22  NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHI--LEI 79

Query: 95  DVRDFDAVKTALDE------AGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSF 147
           D+R+FDA    + +         ++VL  N G+      +      E+   +  N +   
Sbjct: 80  DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139

Query: 148 HMIKAALPLIKK--------RQNGGPASIALMSSQAGQVG 179
            + KA LPL+KK            G A+I  MSS  G + 
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 179

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256

 Score = 82.6 bits (205), Expect = 7e-20
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R  ++TGG  GIG ++  +  K+G RV                 Q A G +      +
Sbjct: 12  SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGN 71

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D+D+          E G +DVLV N G+         + ++ + +ID N+   F++ K
Sbjct: 72  VGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTK 131

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  + +R  G    I  +SS  GQ G
Sbjct: 132 QVIDGMVERGWG---RIINISSVNGQKG 156

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245

 Score = 81.8 bits (203), Expect = 1e-19
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADV 96
           R   ITG S GIG A+A + A++G  ++I   ++ EK EE  +  +      VA   A++
Sbjct: 2   RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61

Query: 97  RDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
            + +A       A +  G +D LV N G+     L     ++   +++ N+   F   + 
Sbjct: 62  LEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTRE 121

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
           A+ L+ K + G    I  ++S  G +G
Sbjct: 122 AVKLMMKARFG---RIVNITSVVGILG 145

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score = 81.8 bits (203), Expect = 1e-19
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TG S GIG A+A   A+ GA+V   A S    +     +    G      + +
Sbjct: 8   EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL----GDNGKGMALN 63

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V + +++    K   DE G VD+LV N G+     L     +E   +++ N+   F + K
Sbjct: 64  VTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSK 123

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A L  + K++ G    I  + S  G +G
Sbjct: 124 AVLRGMMKKRQG---RIINVGSVVGTMG 148

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266

 Score = 82.2 bits (204), Expect = 1e-19
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             R   +TG + GIG A+A     +GA V +     +KL+E    +    G +V  +SA+
Sbjct: 26  TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL----GKDVFVFSAN 81

Query: 96  VRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D  ++    + A  E   +D+LV N G+   G        +   ++ VN+  +  + +
Sbjct: 82  LSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTR 141

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  + +R+ G    I  ++S  G VG
Sbjct: 142 ELIHSMMRRRYG---RIINITSIVGVVG 166

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score = 81.0 bits (201), Expect = 3e-19
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 17/157 (10%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATY 92
            +K +   +TG S GIG A+A + A +GA V+I      E+ EE    IQ + G    + 
Sbjct: 4   MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ-SNGGSAFSI 62

Query: 93  SADVRDFDAVKTALDEA----------GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
            A++     V+                   D+L+ N G+     +E  +      M+ VN
Sbjct: 63  GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVN 122

Query: 143 IIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
               F +I+ AL  +   ++     I  +SS A ++ 
Sbjct: 123 AKAPFFIIQQALSRL---RDNS--RIINISSAATRIS 154

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276

 Score = 81.1 bits (201), Expect = 3e-19
 Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 26/162 (16%)

Query: 42  ITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDFD 100
           ITGG+  IG ++A +  ++G RV +    S    +     +  A          D+    
Sbjct: 16  ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSS 75

Query: 101 AV--------KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRL-----------MIDV 141
           ++          +    G  DVLV N   + P  L                     +   
Sbjct: 76  SLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGS 135

Query: 142 NIIGSFHMIKAALPLIKK----RQNGGPASIALMSSQAGQVG 179
           N +    +I+A      +    R      S+  +      + 
Sbjct: 136 NAVAPLFLIRAFARRQGEGGAWRSRNL--SVVNLCDAMTDLP 175

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI---------LARSGEKLEEAKQSIQL 83
           +    R V +TG   G+G A A   A+ GA V +         + +     ++  + I+ 
Sbjct: 5   LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR 64

Query: 84  ATGIEVATYSADVRDFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN 142
             G  VA Y   V   +  VKTALD  G +DV+V N G+         S ++  ++  V+
Sbjct: 65  RGGKAVANY-DSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVH 123

Query: 143 IIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + GSF + +AA   +KK+  G    I + +S +G  G
Sbjct: 124 LRGSFQVTRAAWDHMKKQNYG---RIIMTASASGIYG 157

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 21/147 (14%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           R V +TGG+ GIGLA+A   A  G +V+I  RSGE  E                   D+ 
Sbjct: 22  RSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFL------------AVKCDIT 69

Query: 98  DFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D + V+ A  E     GPV+VL+ N GV     L   S ++   +++ N+ G+F ++K A
Sbjct: 70  DTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRA 129

Query: 154 L-PLIKKRQNGGPASIALMSSQAGQVG 179
              +++ ++      + L+SS  G +G
Sbjct: 130 NRAMLRAKK----GRVVLISSVVGLLG 152

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 21/157 (13%)

Query: 28  PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI 87
            +  + P   R V +TGG+ GIGLA+A + A +G +V++  R     +            
Sbjct: 6   TEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF--------- 56

Query: 88  EVATYSADVRDFDAV----KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
                  DV D DAV        +  GPV+VLV N G+     L   + ++   +I+ N+
Sbjct: 57  ---GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANL 113

Query: 144 IGSFHMIKAAL-PLIKKRQNGGPASIALMSSQAGQVG 179
            G+F + + A   + + +       +  + S +G  G
Sbjct: 114 TGAFRVAQRASRSMQRNKF----GRMIFIGSVSGLWG 146

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 26  VRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSI----LARSGEKL-----EE 76
           +     ++    R   +TG  +G+G   A   A+ GA+V +       SG+       + 
Sbjct: 8   MSSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADI 67

Query: 77  AKQSIQLATGIEVATYSADVRDFDA-VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEV 135
               I+ A G  VA Y   V D    ++TA+   G VD+LV N G+     L   S  + 
Sbjct: 68  VVDEIRKAGGEAVADY-NSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDW 126

Query: 136 RLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            L+ DV++ GSF   +AA P +KK QN G   I + SS +G  G
Sbjct: 127 NLVNDVHLKGSFKCTQAAFPYMKK-QNYG--RIIMTSSNSGIYG 167

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARV----------SILARSGEKLEEAKQSIQLAT 85
             R V +TG   GIG A A   A EGARV             A  G   +     I  A 
Sbjct: 26  DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG 85

Query: 86  GIEVATYSADVRDFDA----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDV 141
           G  VA   ++V D+D     ++TA++  G +DVLV N G+     +   S +E   +I V
Sbjct: 86  GEAVADG-SNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAV 144

Query: 142 NIIGSFHMIKAALPLIKKRQNGGP---ASIALMSSQAGQVG 179
           ++ G F  ++ A    +     G      I   SS AG  G
Sbjct: 145 HLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQG 185

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255

 Score = 77.3 bits (191), Expect = 7e-18
 Identities = 34/147 (23%), Positives = 49/147 (33%), Gaps = 10/147 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSADVRD 98
           + ITG +SGIG AL    A+ G  V  + R    +E    +     T +           
Sbjct: 4   IAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVL 63

Query: 99  FDAVKTALDEA----GPVDVLVVNQGVF--VPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
              V  A          + V V   GV   + G  E  S  +    + V  I +     A
Sbjct: 64  DGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA 123

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            LP+++    G     A     A Q G
Sbjct: 124 ELPMVEAMLAG---DEARAIELAEQQG 147

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 33/181 (18%), Positives = 47/181 (25%), Gaps = 43/181 (23%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
             +TG +  +G ++A     EG  V +   RS  +      ++         T  AD+ +
Sbjct: 12  ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 71

Query: 99  FDA---------------------VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDE--- 134
                                   V       G  DVLV N   F P  L     D    
Sbjct: 72  VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 131

Query: 135 -----------VRLMIDVNIIGSFHMIKAALP-----LIKKRQNGGPASIALMSSQAGQV 178
                         +   N I  + +IKA          K R      SI  M       
Sbjct: 132 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNY--SIINMVDAMTNQ 189

Query: 179 G 179
            
Sbjct: 190 P 190

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328

 Score = 77.1 bits (190), Expect = 2e-17
 Identities = 32/181 (17%), Positives = 46/181 (25%), Gaps = 43/181 (23%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
             +TG +  +G ++A     EG  V +   RS  +      ++         T  AD+ +
Sbjct: 49  ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 108

Query: 99  FDA---------------------VKTALDEAGPVDVLVVNQGVFVPGEL---------- 127
                                   V       G  DVLV N   F P  L          
Sbjct: 109 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 168

Query: 128 ----EVQSLDEVRLMIDVNIIGSFHMIKAALP-----LIKKRQNGGPASIALMSSQAGQV 178
                         +   N I  + +IKA          K R      SI  M       
Sbjct: 169 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNY--SIINMVDAMTNQ 226

Query: 179 G 179
            
Sbjct: 227 P 227

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 74.7 bits (184), Expect = 7e-17
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
             + I+G ++GIG A        G ++  +     ++                   AD+ 
Sbjct: 2   SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI------------------ADLS 43

Query: 98  DFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
             +  K A+ +        +D LV+  G+             +  ++ VN  G+  ++ A
Sbjct: 44  TAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQT-------KVLGNVVSVNYFGATELMDA 96

Query: 153 ALPLIKKRQNGGPASIALMSSQAG 176
            LP +KK       +  ++SS A 
Sbjct: 97  FLPALKKGHQP---AAVVISSVAS 117

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 24  LIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL 83
           + +  K     +K +   +  G+  +G+  A   A EGA V +  R  +K + A  S+  
Sbjct: 106 VALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK 165

Query: 84  ATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNI 143
              + V   +A+  D  +   A+  A          G+ +  +   Q+   + ++ D N 
Sbjct: 166 RFKVNVT--AAETADDASRAEAVKGAH-FVFTAGAIGLELLPQAAWQNESSIEIVADYNA 222

Query: 144 I 144
            
Sbjct: 223 Q 223

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 12/151 (7%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P+  +   +TG + GIG  +A   A++GA V  +   G     A+   ++A  +     +
Sbjct: 210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG----AAEDLKRVADKVGGTALT 265

Query: 94  ADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
            DV   DAV            G VD+LV N G+     L          +I VN++    
Sbjct: 266 LDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQR 325

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + +  +      + G    +  +SS AG  G
Sbjct: 326 LTEGLVGNGTIGEGG---RVIGLSSMAGIAG 353

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 30  PVRIP-IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE 88
              +P    R V ITG +SG+G   A + A+ GA V +  R   K E A +++      +
Sbjct: 8   AADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM----AGQ 63

Query: 89  VATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           V     D++D  +V+   D     DVL+ N G+         ++D     I  N +G F 
Sbjct: 64  VEVRELDLQDLSSVRRFADGVSGADVLINNAGIMAVPYAL--TVDGFESQIGTNHLGHFA 121

Query: 149 MIKAALPLIKKR 160
           +    LP +  R
Sbjct: 122 LTNLLLPRLTDR 133

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 37  DRHVFITGGSSGIGLALA-HQAAKEGAR-VSILARSGEKLEEAKQSIQL--ATGIEVATY 92
              V +TGG+  +G  +A H   + G R + +++R G     A + +    A G EV+  
Sbjct: 530 AGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQ 589

Query: 93  SADVRDFDAVKTALDEA 109
           + DV D + +   L   
Sbjct: 590 ACDVADRETLAKVLASI 606

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 16/115 (13%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             + G +  +G   A      G  + ++ R   +++           +E     A++ D 
Sbjct: 16  YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA-------YLEPECRVAEMLDH 68

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
             ++ AL     +D  V+    + P           +  +   +  +     A L
Sbjct: 69  AGLERALRG---LDG-VIFSAGYYP-----SRPRRWQEEVASALGQTNPFYAACL 114

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSIL--ARSG--EKLEEAKQSIQLATGI 87
           ++    +   ITG +  IG  L  +  K    V  L    +G    L+E K  +      
Sbjct: 20  QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS 79

Query: 88  EVATYSADVRDFDAVKTALDEAGPVDVLVVNQG--VFVPGELEVQSLDEVRLMIDVNIIG 145
                  D+RD    +  +     VD  V++Q     VP     +S+ +       NI G
Sbjct: 80  RFCFIEGDIRDLTTCEQVMKG---VDH-VLHQAALGSVP-----RSIVDPITTNATNITG 130

Query: 146 SFHMIKAA 153
             +++ AA
Sbjct: 131 FLNILHAA 138

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 21/118 (17%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K + + + G S  +G AL ++A   G  V+ + R  EK++   + +++           D
Sbjct: 3   KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKA--------D 54

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           V   D V          D ++           +         + D  I     +I   
Sbjct: 55  VSSLDEVCEVCKG---ADAVISAFN-PGWNNPD---------IYDETIKVYLTIIDGV 99

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 1    MAALSFLGFLVLLLPLTLLLLLYLIVRPKPVRIPIK-----DRHVFITGGSSGIGLALAH 55
            MA    +G +V+ +           + P  +    K      +   ITGG  G GL LA 
Sbjct: 1843 MAQGKHIGKVVIQVREEEQGPAPRGLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQLAQ 1902

Query: 56   QAAKEGARVSILA-RSGEKLEEAKQSIQL--ATGIEVATYSADVRDFDAVKTALDEA 109
                 GA+  +L  RSG +     + ++     G++V   +++    D  ++ + EA
Sbjct: 1903 WLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEA 1959

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 21/116 (18%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           + + +TG +  +G  +  + A     + +   S   L+ A  + +            D+ 
Sbjct: 4   KRLLVTGAAGQLGRVMRERLAPMAEILRLADLS--PLDPAGPNEECVQC--------DLA 53

Query: 98  DFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D +AV   +      D  +V+ G    G    +  +++   +  NIIG +++ +AA
Sbjct: 54  DANAVNAMVAG---CDG-IVHLG----GISVEKPFEQI---LQGNIIGLYNLYEAA 98

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSIL--ARSG--EKLEEAKQSIQLATGI 87
            +P + +   ITG +  IG  L     K   +V  L    +G    L+E +  +      
Sbjct: 22  ELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS 81

Query: 88  EVATYSADVRDFDAVKTALDEAGPVDVLVVNQG--VFVPGELEVQSLDEVRLMIDVNIIG 145
                  D+R+ D    A      VD  V++Q     VP     +S+++       NI G
Sbjct: 82  NFKFIQGDIRNLDDCNNACAG---VDY-VLHQAALGSVP-----RSINDPITSNATNIDG 132

Query: 146 SFHMIKAA 153
             +M+ AA
Sbjct: 133 FLNMLIAA 140

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + I G +   GL    QA + G  V++L R   +L       +      V     DV   
Sbjct: 6   IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-----EGPRPAHVVV--GDVLQA 58

Query: 100 DAVKTALDEAGPVDVLVVNQG 120
             V   +      D ++V  G
Sbjct: 59  ADVDKTVAG---QDAVIVLLG 76

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 39  HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
            + I G +   G  +  +A   G  V+ + R+  K+ +  + I +          +D+ D
Sbjct: 2   KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSD 61

Query: 99  FDAV 102
            + V
Sbjct: 62  QNVV 65

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} Length = 511

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQL--ATGIEVATYS 93
              V ITGG   IG  LA + A EGA   +L  R G +   A +  +     G EV   +
Sbjct: 259 SGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAA 318

Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVR 136
            DV + DA+   +    P + +    G+     ++  S +   
Sbjct: 319 CDVAERDALAALVTAY-PPNAVFHTAGILDDAVIDTLSPESFE 360

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* Length = 486

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQL--ATGIEVATYS 93
              V +TGG+ G+G  +A   A+ GA   +L  RSG   + A + +    A G      +
Sbjct: 226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAA 285

Query: 94  ADVRDFDAVKTALDE---AGPVDVLVVNQGVFVPGELEVQSLDEVR 136
            DV D ++V+  L       P+  +         G ++  + + + 
Sbjct: 286 CDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIE 331

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 29/127 (22%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADV 96
             + +TG + G+G A+          V +         E  ++ +             D+
Sbjct: 3   NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVA-----------CDL 51

Query: 97  RDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
            D  AV   + +    D  +++ G    G    +  +++   +  NIIG++++ +AA   
Sbjct: 52  ADAQAVHDLVKD---CDG-IIHLG----GVSVERPWNDI---LQANIIGAYNLYEAA--- 97

Query: 157 IKKRQNG 163
              R  G
Sbjct: 98  ---RNLG 101

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 22/123 (17%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGA-----RVSILARSGEKLEEAKQSIQLATGIEVATY 92
               I G +  IG +LA             +V  +AR           I           
Sbjct: 2   SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQC------ 55

Query: 93  SADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
             D+ D D  +  L     V  +          E E           + N     +++ A
Sbjct: 56  --DISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQE---------NCEANSKMFRNVLDA 104

Query: 153 ALP 155
            +P
Sbjct: 105 VIP 107

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 40  VFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
           V     +SG+G A   Q A   G R   + R    +++    ++      V T       
Sbjct: 171 VIQNASNSGVGQA-VIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEEL--R 227

Query: 99  FDAVKTALDEAGPVDV 114
              +K    +     +
Sbjct: 228 RPEMKNFFKDMPQPRL 243

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA-TYSADVRD 98
             +T G+S +   +   A +EG R  +  R  E++   K       G        A   D
Sbjct: 168 FVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-----DIGAAHVLNEKAP--D 220

Query: 99  F-DAVKTALDEAGPVDV 114
           F   ++  +       +
Sbjct: 221 FEATLREVMKAEQ-PRI 236

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%)

Query: 39  HVFITGGSSG-IGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
            + I G   G +GL LA +   +G  V+ L RS + +           G++     ADV 
Sbjct: 5   KILIAG--CGDLGLELARRLTAQGHEVTGLRRSAQPMPA---------GVQT--LIADVT 51

Query: 98  DFDAVKTALDEAGPVDVLVVN 118
             D + + +      ++LV  
Sbjct: 52  RPDTLASIVHLR--PEILVYC 70

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK--QSIQLATGIEVATYSADVR 97
           +FI G +  +G +L    +    ++   AR  E++ +    +++           +  + 
Sbjct: 3   IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLH 62

Query: 98  DFDAV 102
             DA+
Sbjct: 63  GMDAI 67

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* Length = 496

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 28  PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQL--A 84
           P   + P     V +TGG+ GIG  +A + A++GA   +L  R G     A +       
Sbjct: 230 PGSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQ 289

Query: 85  TGIEVATYSADVRDFDAVKTALDE 108
            G+ V   + D  D +A+   L E
Sbjct: 290 LGVRVTIAACDAADREALAALLAE 313

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE--AKQSIQLATGIEVATYSADVR 97
           V + G +  +   L  +   +G     + R+ E+  E   + +  +        +S    
Sbjct: 24  VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFA 83

Query: 98  DFDAV 102
             DAV
Sbjct: 84  SIDAV 88

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 39  HVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQ 79
            V +    SG+ +A A Q AK  GARV   A S +KL  AK 
Sbjct: 169 DVLVMAAGSGVSVA-AIQIAKLFGARVIATAGSEDKLRRAKA 209

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 39  HVFITGGSSGIGLALAHQ-AAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           +V I G    I   + +Q A K+  + ++ AR   K+ +        T  ++     DV 
Sbjct: 25  NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-----YPTNSQIIM--GDVL 77

Query: 98  DFDAVKTALDEAGPVDVLVVNQG 120
           +  A+K A+      D++  N  
Sbjct: 78  NHAALKQAMQG---QDIVYANLT 97

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 16/114 (14%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + +TG S  IG  L    A++  + +++A   + ++     I+          + DV + 
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIA--SDIVQRDTGGIKF--------ITLDVSNR 51

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D +  A+++   +D  + +      G L  +   +  L   VN+ G++++++AA
Sbjct: 52  DEIDRAVEKYS-IDA-IFHLA----GILSAKGEKDPALAYKVNMNGTYNILEAA 99

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 37  DRHVFITGGSSG-IGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
              +   G   G     L+   A +G R+   +R+ +++E  +     A+G E   +  +
Sbjct: 5   TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-----ASGAEPLLWPGE 57

Query: 96  VRDFDAVKTAL 106
               D V   L
Sbjct: 58  EPSLDGVTHLL 68

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 39  HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE-AKQSIQLATGIEVATYSADVR 97
            + + G +   G A+  +A + G  V  + R  +K  +    ++       +    AD+ 
Sbjct: 2   KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLD 61

Query: 98  DFDAVKTAL 106
             DAV  AL
Sbjct: 62  SVDAVVDAL 70

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V I G +  IG  +A  +        ILAR G +     +  +             + + 
Sbjct: 13  VLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ 72

Query: 100 DAVKTALDEAGPVDVLV 116
           +A++  L E   +D++V
Sbjct: 73  EAMEKILKEHE-IDIVV 88

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 11/132 (8%)

Query: 39  HVFITGGSSGIGLALAHQA-AKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR 97
           ++ I G +  I   L           +++  R  +     +    +     V       +
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPE----IIDHERVTVIEGSFQ 62

Query: 98  DFDAVKTALDEAGPVDVLVVNQGVFVPGE---LEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           +   ++ A+      +V+ V            ++  S   +R +I V++ G       AL
Sbjct: 63  NPGXLEQAVTN---AEVVFVGAMESGSDMASIVKALSRXNIRRVIGVSMAGLSGEFPVAL 119

Query: 155 PLIKKRQNGGPA 166
                       
Sbjct: 120 EKWTFDNLPISY 131

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 39  HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ 79
           +V I G S G+G      A   GA    +  S +K E  + 
Sbjct: 231 NVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA 271

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 40  VFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVA-TYSADVR 97
           V + G + GIG A A Q AK  GA+V  +       E  K     + G ++         
Sbjct: 163 VLVLGAAGGIGTA-AIQIAKGMGAKVIAVVNRTAATEFVK-----SVGADIVLPLEEGWA 216

Query: 98  DFDAVKTALDEAGPVDV 114
              AV+ A   AG VD+
Sbjct: 217 --KAVREATGGAG-VDM 230

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} Length = 422

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 18/108 (16%)

Query: 26  VRPKPVRIPIKDRHVFITGGSSGIGLALAHQAA-KEGARVSILARSGEKLEEAKQSIQL- 83
            R + V      + V + G SSG GLA    AA   GA    +            +    
Sbjct: 51  TRARGV-RNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWY 109

Query: 84  ----------ATGIEVATYSADVRDFDAVKTALDEA-----GPVDVLV 116
                     A G+   + + D     A    ++       G VD++V
Sbjct: 110 NSAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVV 157

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 29  KPVRIPIKDRHVFI--TGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLAT 85
              R+ IK+    +  +GG++    A+        A+ + ++ R+ EK  E     ++ +
Sbjct: 114 SKFRVEIKNNICVVLGSGGAA---RAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVIS 170

Query: 86  GIEVATYSADV 96
             E++    DV
Sbjct: 171 YDELSNLKGDV 181

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 40  VFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVA-TYSADVR 97
           V I  G SG+G A A Q  +  GA   + A S +KL+ A++      G      Y  +  
Sbjct: 166 VLIHAGLSGVGTA-AIQLTRMAGAIPLVTAGSQKKLQMAEK-----LGAAAGFNYKKE-- 217

Query: 98  DF-DAVKTALDEAGPVDVLV 116
           DF +A       AG V++++
Sbjct: 218 DFSEATLKFTKGAG-VNLIL 236

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 9/40 (22%), Positives = 13/40 (32%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ 79
           V I G S G+G          G     +  S +K    + 
Sbjct: 224 VLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA 263

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 12/78 (15%)

Query: 40  VFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVA-TYSADVR 97
           + +    S IG     Q ++    R+  + R+ +  EE         G       S    
Sbjct: 148 LLVNACGSAIGHL-FAQLSQILNFRLIAVTRNNKHTEELL-----RLGAAYVIDTSTA-- 199

Query: 98  DF-DAVKTALDEAGPVDV 114
              + V    +  G  D 
Sbjct: 200 PLYETVMELTNGIG-ADA 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	100.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	100.0
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	100.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.97
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.97
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.97
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.97
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.97
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.97
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.97
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.97
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.97
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.97
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.97
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.97
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.97
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.96
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.96
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.96
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.96
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.96
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.96
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.96
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.96
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.96
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.96
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.96
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.96
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.96
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.96
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.96
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.96
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.96
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.96
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.96
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.96
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.96
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.96
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.96
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.96
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.96
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.96
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.96
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.96
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.96
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.96
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.96
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.96
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.96
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.96
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.96
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.96
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.96
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.96
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.96
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.96
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.96
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.96
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.96
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.96
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.96
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.96
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.96
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.96
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.96
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.96
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.96
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.96
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.96
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.96
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.95
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.95
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.95
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.95
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.95
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.95
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.95
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.95
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.95
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.95
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.95
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.95
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.95
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.95
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.95
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.95
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.95
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.95
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.95
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.95
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.95
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.95
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.95
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.95
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.95
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.95
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.95
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.95
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.95
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.95
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.95
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.95
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.95
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.95
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.95
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.95
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.95
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.95
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.95
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.95
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.95
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.95
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.95
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.95
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.95
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.95
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.95
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.95
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.95
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.95
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.95
1spx_A	278	Short-chain reductase family member (5L265); paral	99.95
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.95
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.95
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.95
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.95
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.95
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.95
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.95
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.95
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.95
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.95
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.95
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.94
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.94
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.94
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.94
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.94
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.94
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.94
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.94
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.94
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.94
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.94
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.94
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.94
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.94
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.94
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.94
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.94
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.94
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.94
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.94
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.94
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.94
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.94
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.94
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.94
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.94
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.94
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.94
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.94
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.94
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.94
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.94
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.94
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.94
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.94
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.94
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.94
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.93
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.93
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.93
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.93
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.93
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.93
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.93
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.93
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.93
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.93
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.93
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.93
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.93
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.93
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.93
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.93
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.93
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.93
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.93
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.92
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.92
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.92
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.92
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.92
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.92
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.92
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.92
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.91
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.91
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.91
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.91
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.91
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.91
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.9
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.9
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.89
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.89
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.89
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.89
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.88
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.88
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.88
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.87
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.87
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.87
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.87
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.87
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.87
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.87
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.85
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.85
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.85
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.82
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.82
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.82
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.78
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.78
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.77
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.76
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.76
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.76
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.75
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.73
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.73
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.73
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.73
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.73
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.73
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.72
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.72
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.71
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.71
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.71
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.71
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.7
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.7
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.7
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.7
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.7
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.69
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.69
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.69
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.69
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.67
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.67
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.66
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.66
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.66
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.66
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.65
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.65
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.64
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.64
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.64
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.63
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.62
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.62
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.62
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.61
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.61
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.61
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.61
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.6
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.6
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.59
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.59
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.58
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.58
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.58
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.58
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.58
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.56
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.56
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.55
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.55
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.55
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.55
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.54
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.53
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.52
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.51
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.51
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.5
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.48
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.47
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.47
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.47
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.46
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.45
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.42
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.41
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.4
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.39
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.37
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.36
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.36
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.35
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.34
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.32
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.3
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.29
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.29
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.27
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.24
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.23
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.16
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.12
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.1
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	99.02
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.94
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.89
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.86
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.81
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.79
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.78
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.77
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.77
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	98.77
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.64
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.63
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	98.61
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.6
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.6
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.6
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.59
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.58
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.56
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.54
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.54
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.52
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.52
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.51
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.51
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.39
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.38
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.36
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.36
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.34
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.32
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.31
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.31
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.27
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.27
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.25
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.23
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.23
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.18
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.17
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.15
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.14
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	98.14
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.13
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.11
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.11
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.1
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	98.09
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	98.08
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.07
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.05
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	98.04
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.04
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.02
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	98.02
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	98.01
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.98
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.97
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.96
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.91
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.91
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.91
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.84
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.84
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.84
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.83
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.82
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.82
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.77
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.71
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.68
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.67
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.66
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.66
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	97.66
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.66
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.65
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.65
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.63
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.61
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.6
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.59
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.59
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.58
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.56
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.56
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.55
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.55
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.54
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.54
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.5
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.5
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.47
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.47
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.46
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.46
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.44
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.44
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.44
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.43
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.43
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.42
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.42
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.41
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.4
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	97.39
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.38
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	97.37
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.37
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.35
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.35
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.33
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.32
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.31
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.3
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.26
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.22
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.2
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.19
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.18
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.17
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.15
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.14
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.14
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.12
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.12
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.06
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.04
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.01
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	97.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.98
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.97
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.95
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.95
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.95
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.88
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.86
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.86
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.86
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.82
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.8
1lnq_A	336	MTHK channels, potassium channel related protein;	96.79
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.79
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.78
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.78
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.78
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.77
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.76
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.75
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.74
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.71
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.71
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.7
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.69
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.66
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.65
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.63
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.62
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.62
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.61
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.61
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.61
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.6
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.59
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.58
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.55
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	96.5
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.49
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.47
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	96.47
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.44
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.43
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.41
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.37
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.36
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.35
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.33
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.31
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.29

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=100.00  E-value=7.1e-34  Score=213.40  Aligned_cols=143  Identities=27%  Similarity=0.350  Sum_probs=129.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++||+++||||++|||+++|++|+++|++|++++|+++++++..+++.. .+.++..+.+|++|++++++++++    
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~-~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG-MGKEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999988864 467899999999999998877654    


Q ss_pred             hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|++|+||||||... ..++.+.++|+|++++++|+.|+++++|+++|+|++++.|   +|||+||.+|..|
T Consensus        82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G---~IVnisS~~g~~~  150 (254)
T 4fn4_A           82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKG---VIVNTASIAGIRG  150 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTCS
T ss_pred             cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc---EEEEEechhhcCC
Confidence            699999999999765 4678999999999999999999999999999999988765   9999999998764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=100.00  E-value=2.4e-33  Score=210.59  Aligned_cols=144  Identities=24%  Similarity=0.338  Sum_probs=130.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++||+++||||++|||+++|++|+++|++|++++|+++.+++..+++... +.++..+.+|++|++++++++++    
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK-GYDAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999888888654 67889999999999999877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|++|+||||||.....++.+.++|+|++++++|+.|+++++|+++|+|.+++.  .++|||+||.++..|
T Consensus        84 ~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~--~G~IVnisS~~~~~~  152 (255)
T 4g81_D           84 GIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNS--GGKIINIGSLTSQAA  152 (255)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGTSB
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC--CCEEEEEeehhhcCC
Confidence            689999999999999999999999999999999999999999999999987643  249999999988753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=100.00  E-value=4.4e-32  Score=205.50  Aligned_cols=141  Identities=32%  Similarity=0.432  Sum_probs=124.7

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      +|...++||++|||||++|||+++|++|+++|++|++++|+++.+++..+++    +.++..+.+|++|++++++++++ 
T Consensus        22 ~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~   97 (273)
T 4fgs_A           22 SMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI----GGGAVGIQADSANLAELDRLYEKV   97 (273)
T ss_dssp             ---CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCCeEEEEecCCCHHHHHHHHHHH
Confidence            3445689999999999999999999999999999999999999888777665    56678899999999998887654 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                         +|++|+||||||.....++.+.++|+|++++++|+.|+++++|+++|+|++.     ++||++||.+|..|
T Consensus        98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-----G~IInisS~~~~~~  166 (273)
T 4fgs_A           98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-----SSVVLTGSTAGSTG  166 (273)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-----EEEEEECCGGGGSC
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-----CeEEEEeehhhccC
Confidence               6899999999999888999999999999999999999999999999999542     38999999988764

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.97  E-value=1e-31  Score=200.40  Aligned_cols=141  Identities=23%  Similarity=0.283  Sum_probs=123.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.+  ++..+++.. .+.++..+.+|++|++++++.++ .+++
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~-~g~~~~~~~~Dv~d~~~v~~~~~-~g~i   80 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAK-DGGNASALLIDFADPLAAKDSFT-DAGF   80 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHH-TTCCEEEEECCTTSTTTTTTSST-TTCC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHH-hCCcEEEEEccCCCHHHHHHHHH-hCCC
Confidence            4689999999999999999999999999999999999864  234444443 46788999999999998877765 4789


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |+||||||.....++.++++++|++++++|+.|+++++|+++|+|.++++  .++|||+||.+|..|
T Consensus        81 DiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~--~G~IVnisS~~~~~g  145 (247)
T 4hp8_A           81 DILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGR--SGKVVNIASLLSFQG  145 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGTSC
T ss_pred             CEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--CcEEEEEechhhCCC
Confidence            99999999999999999999999999999999999999999999987753  249999999988764

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.97  E-value=8.6e-31  Score=195.88  Aligned_cols=134  Identities=20%  Similarity=0.296  Sum_probs=119.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hhCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EAGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~~~i  112 (179)
                      +|++|||||++|||+++|++|+++|++|++++|+++..++..++     +.++..+.+|++|+++++++++    ++|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE-----RPNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT-----CTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-----cCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            69999999999999999999999999999999998776654432     4567889999999999887765    46999


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |+||||||.....++.+.+.|+|++++++|+.|+++++|.+.|+|++++ |   +||++||.++..|
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G---~IInisS~~~~~~  139 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-G---RIINIASTRAFQS  139 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-C---EEEEECCGGGTSC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C---cEEEEeecccccC
Confidence            9999999999889999999999999999999999999999999998754 3   9999999988764

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.97  E-value=1.3e-30  Score=196.28  Aligned_cols=142  Identities=25%  Similarity=0.333  Sum_probs=120.5

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH---
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD---  107 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~---  107 (179)
                      |.++++||+++||||++|||+++|++|+++|++|++++|++++.+. .+++.. .+.++..+.+|++|+++++++++   
T Consensus         1 M~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~-~~~~~~~~~~Dv~~~~~v~~~v~~~~   78 (258)
T 4gkb_A            1 MDLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQ-RQPRATYLPVELQDDAQCRDAVAQTI   78 (258)
T ss_dssp             CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHH-HCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHh-cCCCEEEEEeecCCHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999998876543 333433 36678889999999999877665   


Q ss_pred             -hhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          108 -EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       108 -~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++|++|+||||||.....++ +.++|+|++.+++|+.++++++|+++|+|++++ |   +|||+||.+|..|
T Consensus        79 ~~~G~iDiLVNnAGi~~~~~~-~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G---~IVnisS~~~~~~  146 (258)
T 4gkb_A           79 ATFGRLDGLVNNAGVNDGIGL-DAGRDAFVASLERNLIHYYAMAHYCVPHLKATR-G---AIVNISSKTAVTG  146 (258)
T ss_dssp             HHHSCCCEEEECCCCCCCCCT-TSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCTHHHHC
T ss_pred             HHhCCCCEEEECCCCCCCCCc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-C---eEEEEeehhhccC
Confidence             47999999999998765444 689999999999999999999999999997653 3   9999999987653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.97  E-value=1.2e-30  Score=194.07  Aligned_cols=132  Identities=27%  Similarity=0.374  Sum_probs=117.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+||+++||||++|||+++|++|+++|++|++++|+++.+++       ..+.++..+.+|++|++++++++++++++|+
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~-------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   81 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA-------PRHPRIRREELDITDSQRLQRLFEALPRLDV   81 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS-------CCCTTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh-------hhcCCeEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            489999999999999999999999999999999999875432       2345788899999999999999999999999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ||||||...  ++++.+.++|++++++|+.|+++++|++.|+|+++.    ++|||+||.+|..|
T Consensus        82 LVNNAGi~~--~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~----G~IVnisS~~~~~~  140 (242)
T 4b79_A           82 LVNNAGISR--DREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG----GSILNIASMYSTFG  140 (242)
T ss_dssp             EEECCCCCC--GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC----EEEEEECCGGGTSC
T ss_pred             EEECCCCCC--CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC----CeEEEEeeccccCC
Confidence            999999754  667889999999999999999999999999997653    39999999998764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.97  E-value=1.6e-29  Score=191.43  Aligned_cols=146  Identities=24%  Similarity=0.390  Sum_probs=132.3

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhh
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      |.+.+++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.... +..+..+.+|++++++++++++++
T Consensus         4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   83 (267)
T 3t4x_A            4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY   83 (267)
T ss_dssp             CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC
T ss_pred             cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc
Confidence            4566889999999999999999999999999999999999998888888876543 467888999999999999999999


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|++|||||.....++.+.+.++|++.+++|+.+++.++++++|.|++++.+   +||++||.++..|
T Consensus        84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~~  150 (267)
T 3t4x_A           84 PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEG---RVIFIASEAAIMP  150 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEE---EEEEECCGGGTSC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC---EEEEEcchhhccC
Confidence            999999999999888888899999999999999999999999999999877544   9999999987653

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.97  E-value=1.5e-29  Score=190.24  Aligned_cols=144  Identities=25%  Similarity=0.294  Sum_probs=128.0

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--  109 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--  109 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++... +.++..+.+|++|++++++++++.  
T Consensus         2 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (252)
T 3h7a_A            2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA-GGRIVARSLDARNEDEVTAFLNAADA   80 (252)
T ss_dssp             ---CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT-TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence            34578999999999999999999999999999999999999888888877654 678899999999999998877653  


Q ss_pred             -CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 -GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 -~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       +++|++|||||.....++.+.+.++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..|
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~~  148 (252)
T 3h7a_A           81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQG---KIFFTGATASLRG  148 (252)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEEEEGGGTCC
T ss_pred             hCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEECCHHHcCC
Confidence             789999999999888888899999999999999999999999999999887654   9999999987653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.97  E-value=2.7e-29  Score=189.76  Aligned_cols=143  Identities=27%  Similarity=0.420  Sum_probs=128.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++....+.++..+.+|++|++++++++++   
T Consensus         5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (262)
T 3pk0_A            5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVE   84 (262)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999988888887655446789999999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++++|++|||||.....++.+.++++|++.+++|+.++++++++++|.|++++.+   +||++||.++.
T Consensus        85 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g---~iv~isS~~~~  151 (262)
T 3pk0_A           85 EFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSG---RVVLTSSITGP  151 (262)
T ss_dssp             HHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSC---EEEEECCSBTT
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---EEEEEechhhc
Confidence             5899999999999888888999999999999999999999999999999887654   99999998874

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.97  E-value=5.7e-29  Score=188.27  Aligned_cols=144  Identities=26%  Similarity=0.347  Sum_probs=128.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++.... +.++..+.+|++|.+++++++++   
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER   83 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999888888876533 44588999999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|++|||||.....++.+.++++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..|
T Consensus        84 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~  152 (265)
T 3lf2_A           84 TLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRAD---AAIVCVNSLLASQP  152 (265)
T ss_dssp             HHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---EEEEEEEEGGGTSC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---eEEEEECCcccCCC
Confidence             589999999999988888889999999999999999999999999999987654   49999999987653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.97  E-value=6.5e-29  Score=187.12  Aligned_cols=143  Identities=26%  Similarity=0.358  Sum_probs=127.0

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|.+++++++++   
T Consensus         7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~   85 (256)
T 3gaf_A            7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ-AGGKAIGLECNVTDEQHREAVIKAALD   85 (256)
T ss_dssp             TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999988888777754 367788999999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|++|||||.....++ +.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..|
T Consensus        86 ~~g~id~lv~nAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~~  153 (256)
T 3gaf_A           86 QFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGG---AILNISSMAGENT  153 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE---EEEEECCGGGTCC
T ss_pred             HcCCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEEcCHHHcCC
Confidence             5899999999999887777 78999999999999999999999999999887644   9999999987653

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.97  E-value=2.8e-29  Score=190.52  Aligned_cols=149  Identities=28%  Similarity=0.339  Sum_probs=127.8

Q ss_pred             hcCCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           26 VRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        26 ~~~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      ..|.++...+++|++|||||++|||+++|++|+++|++|++++|+++..++..+++... +.++..+.+|++|.++++++
T Consensus        17 ~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~   95 (270)
T 3ftp_A           17 QGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA-GLEGRGAVLNVNDATAVDAL   95 (270)
T ss_dssp             ------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-TCCCEEEECCTTCHHHHHHH
T ss_pred             CCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEEeCCCHHHHHHH
Confidence            33445666789999999999999999999999999999999999999888887777543 56778899999999998877


Q ss_pred             HHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          106 LDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       106 ~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++    ++++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|.+++.+   +||++||.++..
T Consensus        96 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  169 (270)
T 3ftp_A           96 VESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGG---RIVNITSVVGSA  169 (270)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC---EEEEECchhhCC
Confidence            654    5899999999999888888889999999999999999999999999999887654   999999987654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.97  E-value=4.1e-29  Score=189.14  Aligned_cols=146  Identities=24%  Similarity=0.302  Sum_probs=130.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+.+++|++|||||++|||+++|++|+++|++|++++|+++..++..+++....+.++..+.+|++|++++++++++   
T Consensus        15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   94 (266)
T 4egf_A           15 VLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE   94 (266)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999988888887665577899999999999998777654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|+||||||.....++.+.++++|++.+++|+.+++.+++++.|.|++++.  .++||++||.++..+
T Consensus        95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~g~iv~isS~~~~~~  164 (266)
T 4egf_A           95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGE--GGAIITVASAAALAP  164 (266)
T ss_dssp             HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGTSC
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEEEcchhhccC
Confidence             589999999999988888899999999999999999999999999999988652  249999999987643

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.97  E-value=7.9e-29  Score=187.50  Aligned_cols=141  Identities=33%  Similarity=0.433  Sum_probs=126.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||+++|++|+++|++|++++|+++++++..+++... +.++..+.+|++|.+++++++++    ++
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA-GGTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT-TCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999888888877543 66788999999999998887654    58


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|+||||||.....++.+.+.++|++++++|+.|++.+++.++|.|++++.|   +||++||.++..|
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~IV~isS~~~~~~  146 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSG---QIINIGSIGALSV  146 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTCC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCe---EEEEEcCHHHccc
Confidence            99999999999888889999999999999999999999999999999887654   9999999987653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.97  E-value=6.4e-29  Score=189.55  Aligned_cols=147  Identities=27%  Similarity=0.342  Sum_probs=124.0

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ...+++|++|||||++|||+++|++|+++|++|++++|+++..++..+++....+..+..+.+|++|.+++++++++   
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  107 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA  107 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999888888887655555568899999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|+||||||.... .++.+.+.++|++.+++|+.|++.++++++|.|++++. ..++||++||.++..|
T Consensus       108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-~~g~IV~isS~~~~~~  179 (281)
T 4dry_A          108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTP-RGGRIINNGSISAQTP  179 (281)
T ss_dssp             HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSS-CCEEEEEECCGGGTCC
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CCcEEEEECCHHhCCC
Confidence             5899999999998754 67888999999999999999999999999999987652 1359999999987653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.96  E-value=1.1e-28  Score=187.70  Aligned_cols=149  Identities=30%  Similarity=0.466  Sum_probs=125.7

Q ss_pred             CCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-------------ChhHHHHHHHHHHhhcCceEEEEEe
Q 030328           28 PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-------------SGEKLEEAKQSIQLATGIEVATYSA   94 (179)
Q Consensus        28 ~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-------------~~~~~~~~~~~~~~~~~~~v~~~~~   94 (179)
                      |.+|...+++|+++||||++|||+++|++|+++|++|++++|             +.+..++..+++.. .+.++..+.+
T Consensus         2 p~~m~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   80 (277)
T 3tsc_A            2 PGSMAGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA-ANRRIVAAVV   80 (277)
T ss_dssp             -----CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred             CCccccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHh-cCCeEEEEEC
Confidence            345666789999999999999999999999999999999998             56666666665543 3667899999


Q ss_pred             eCCCHHHHHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEE
Q 030328           95 DVRDFDAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIAL  170 (179)
Q Consensus        95 D~~~~~~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~  170 (179)
                      |++|.+++++++++    ++++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|.+++.  .++||+
T Consensus        81 D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--~g~iv~  158 (277)
T 3tsc_A           81 DTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGR--GGSIIL  158 (277)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC--CCEEEE
Confidence            99999998887654    589999999999988888889999999999999999999999999999988652  249999


Q ss_pred             ecccCcccC
Q 030328          171 MSSQAGQVG  179 (179)
Q Consensus       171 iss~~g~~g  179 (179)
                      +||.++..+
T Consensus       159 isS~~~~~~  167 (277)
T 3tsc_A          159 ISSAAGMKM  167 (277)
T ss_dssp             ECCGGGTSC
T ss_pred             EccHhhCCC
Confidence            999987653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.96  E-value=6.4e-29  Score=190.63  Aligned_cols=145  Identities=28%  Similarity=0.432  Sum_probs=129.1

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      +...++++|++|||||++|||+++|++|+++|++|++++|++++.++..+++......++..+.+|++|++++++++++ 
T Consensus        34 ~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  113 (293)
T 3rih_A           34 KVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTV  113 (293)
T ss_dssp             CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence            3345678999999999999999999999999999999999999888888877654336788999999999998877654 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                         ++++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++.
T Consensus       114 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~iV~isS~~~~  182 (293)
T 3rih_A          114 VDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRG---RVILTSSITGP  182 (293)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSC---EEEEECCSBTT
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC---EEEEEeChhhc
Confidence               5899999999999888888899999999999999999999999999999887655   99999998874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.96  E-value=1.8e-28  Score=184.28  Aligned_cols=144  Identities=28%  Similarity=0.384  Sum_probs=126.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeC--CCHHHHHHHHHh--
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV--RDFDAVKTALDE--  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~--~~~~~v~~~~~~--  108 (179)
                      ..+++|+++||||++|||+++|++|+++|++|++++|++++.++..+++....+.++..+.+|+  ++.+++++++++  
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence            3478999999999999999999999999999999999999988888887765555788899999  999998777654  


Q ss_pred             --hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 --AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 --~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        ++++|+||||||... ..++.+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..|
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g---~iv~isS~~~~~~  158 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAG---SLVFTSSSVGRQG  158 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSC---EEEEECCGGGTSC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCC---EEEEECChhhccC
Confidence              579999999999854 4678889999999999999999999999999999887654   9999999987653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.96  E-value=1.5e-28  Score=189.00  Aligned_cols=154  Identities=29%  Similarity=0.439  Sum_probs=126.2

Q ss_pred             HhhhcCCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC------------hhHHHHHHHHHHhhcCceEE
Q 030328           23 YLIVRPKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS------------GEKLEEAKQSIQLATGIEVA   90 (179)
Q Consensus        23 ~~~~~~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~------------~~~~~~~~~~~~~~~~~~v~   90 (179)
                      |.+..|.+|...+++|+++||||++|||+++|++|+++|++|++++|+            .+.+++..+++.. .+.++.
T Consensus        14 ~~~~~p~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   92 (299)
T 3t7c_A           14 AQTQGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA-LGRRII   92 (299)
T ss_dssp             --------CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH-TTCCEE
T ss_pred             ccCCCCcccccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHh-cCCceE
Confidence            344555667777899999999999999999999999999999999987            5666666666643 367889


Q ss_pred             EEEeeCCCHHHHHHHHHh----hCCCcEEEecCCCCCCCC-cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCC
Q 030328           91 TYSADVRDFDAVKTALDE----AGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGP  165 (179)
Q Consensus        91 ~~~~D~~~~~~v~~~~~~----~~~id~li~~ag~~~~~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~  165 (179)
                      .+.+|++|.+++++++++    ++++|+||||||...... +.+.++++|++.+++|+.|++.++++++|.|.+++.  .
T Consensus        93 ~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--~  170 (299)
T 3t7c_A           93 ASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKR--G  170 (299)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS--C
T ss_pred             EEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--C
Confidence            999999999998887764    589999999999877654 888999999999999999999999999999877642  3


Q ss_pred             cEEEEecccCcccC
Q 030328          166 ASIALMSSQAGQVG  179 (179)
Q Consensus       166 ~~iv~iss~~g~~g  179 (179)
                      ++||++||.++..|
T Consensus       171 g~Iv~isS~~~~~~  184 (299)
T 3t7c_A          171 GSIVFTSSIGGLRG  184 (299)
T ss_dssp             EEEEEECCGGGTSC
T ss_pred             cEEEEECChhhccC
Confidence            59999999987653

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.96  E-value=7.5e-29  Score=188.76  Aligned_cols=142  Identities=26%  Similarity=0.389  Sum_probs=127.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++....+.++..+.+|++|.+++++++++    +
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            478999999999999999999999999999999999999888888877665677899999999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.++++++++++|.|.+++.+   +||++||.++..
T Consensus       104 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  169 (277)
T 4fc7_A          104 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGG---VIVNITATLGNR  169 (277)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE---EEEEECCSHHHH
T ss_pred             CCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC---EEEEECchhhCC
Confidence            899999999998888888899999999999999999999999999999877654   999999987654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.96  E-value=9.8e-29  Score=188.38  Aligned_cols=148  Identities=27%  Similarity=0.368  Sum_probs=125.3

Q ss_pred             CCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHH
Q 030328           28 PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        28 ~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~  105 (179)
                      |.+|.+++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++....  +.++.++.+|++|+++++++
T Consensus         2 p~~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~   81 (281)
T 3svt_A            2 PGSMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARA   81 (281)
T ss_dssp             ------CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHH
T ss_pred             CCCCccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHH
Confidence            4456777899999999999999999999999999999999999998888888776432  23788999999999998887


Q ss_pred             HHh----hCCCcEEEecCCC-CCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          106 LDE----AGPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       106 ~~~----~~~id~li~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++    ++++|++|||||. ....++.+.+.++|++.+++|+.|+++++++++|.|.+++.|   +||++||.++..
T Consensus        82 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  156 (281)
T 3svt_A           82 VDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGG---SFVGISSIAASN  156 (281)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EEEEECCHHHHS
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---EEEEEeCHHHcC
Confidence            765    5899999999997 455678889999999999999999999999999999876544   999999987654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.96  E-value=1.5e-28  Score=187.53  Aligned_cols=144  Identities=28%  Similarity=0.406  Sum_probs=126.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++++|++|||||++|||+++|++|+++|++|++++| +.+..++..+++....+.++..+.+|++|.+++++++++   
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999 566677777777655567889999999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|+||||||.....++.+.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..|
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~~  169 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWG---RIINIASAHGLVA  169 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTSC
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC---EEEEECCcccccC
Confidence             5899999999999888888899999999999999999999999999999887654   9999999987653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.96  E-value=9.7e-29  Score=185.34  Aligned_cols=139  Identities=25%  Similarity=0.338  Sum_probs=123.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.    .+...+.+|++|++++++++++    
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~   80 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG----DNGKGMALNVTNPESIEAVLKAITDE   80 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----ccceEEEEeCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999988877766653    3467789999999998887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..
T Consensus        81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g---~iv~isS~~~~~  147 (248)
T 3op4_A           81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQG---RIINVGSVVGTM  147 (248)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC---EEEEEcchhhcC
Confidence            5899999999999888888999999999999999999999999999999887654   999999987654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.96  E-value=2.4e-28  Score=186.57  Aligned_cols=149  Identities=31%  Similarity=0.467  Sum_probs=124.7

Q ss_pred             CCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC----------------hhHHHHHHHHHHhhcCceEEE
Q 030328           28 PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS----------------GEKLEEAKQSIQLATGIEVAT   91 (179)
Q Consensus        28 ~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~----------------~~~~~~~~~~~~~~~~~~v~~   91 (179)
                      |.+|...+++|+++||||++|||+++|++|+++|++|++++|+                .+.+++..+++.. .+.++..
T Consensus         2 p~~m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (286)
T 3uve_A            2 PGSMTGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG-HNRRIVT   80 (286)
T ss_dssp             ----CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT-TTCCEEE
T ss_pred             CCCCCcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhh-cCCceEE
Confidence            3456667899999999999999999999999999999999987                5566666655543 3667899


Q ss_pred             EEeeCCCHHHHHHHHHh----hCCCcEEEecCCCCCCCC-cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCc
Q 030328           92 YSADVRDFDAVKTALDE----AGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPA  166 (179)
Q Consensus        92 ~~~D~~~~~~v~~~~~~----~~~id~li~~ag~~~~~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~  166 (179)
                      +.+|++|++++++++++    ++++|+||||||...... +.+.++++|++++++|+.++++++++++|.|.+++.  .+
T Consensus        81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~g  158 (286)
T 3uve_A           81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGR--GG  158 (286)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CE
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC--Cc
Confidence            99999999999887654    589999999999877654 888999999999999999999999999999988652  24


Q ss_pred             EEEEecccCcccC
Q 030328          167 SIALMSSQAGQVG  179 (179)
Q Consensus       167 ~iv~iss~~g~~g  179 (179)
                      +||++||.++..|
T Consensus       159 ~iv~isS~~~~~~  171 (286)
T 3uve_A          159 SIILTSSVGGLKA  171 (286)
T ss_dssp             EEEEECCGGGTSC
T ss_pred             EEEEECchhhccC
Confidence            9999999987653

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.96  E-value=9.6e-29  Score=187.68  Aligned_cols=142  Identities=23%  Similarity=0.323  Sum_probs=128.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|++|||||++|||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|.+++++++++    
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN-VGHDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH-TTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999988888887754 366788999999999998887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iV~isS~~~~~  167 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYG---KIVNIGSLTSEL  167 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTS
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEEccHHhCC
Confidence            5789999999999888889999999999999999999999999999999887654   999999988764

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.2e-28  Score=185.11  Aligned_cols=142  Identities=29%  Similarity=0.491  Sum_probs=121.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHh--
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      +.+++|++|||||++|||+++|++|+++|++|++++|++++.++..+++....  ..++..+.+|++|.+++++++++  
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH   82 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999888888876542  26788899999999998877654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|+||||||.....++ +.+.++|++.+++|+.+++.++++++|.|++++.+   +||++||.++..
T Consensus        83 ~~~g~iD~lvnnAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  150 (250)
T 3nyw_A           83 QKYGAVDILVNAAAMFMDGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNG---YIFNVASRAAKY  150 (250)
T ss_dssp             HHHCCEEEEEECCCCCCCCCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECC-----
T ss_pred             HhcCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe---EEEEEccHHhcC
Confidence              5899999999999877777 77899999999999999999999999999887654   999999998765

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.96  E-value=2.9e-28  Score=185.68  Aligned_cols=143  Identities=28%  Similarity=0.418  Sum_probs=124.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC------------hhHHHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS------------GEKLEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~------------~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      .++++|+++||||++|||+++|++|+++|++|++++|+            .+..++..+++.. .+.++..+.+|++|++
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~   84 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEK-TGRRCISAKVDVKDRA   84 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH-TTCCEEEEECCTTCHH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHh-cCCeEEEEeCCCCCHH
Confidence            35789999999999999999999999999999999997            4555555555543 3677899999999999


Q ss_pred             HHHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          101 AVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       101 ~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++++++++    ++++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~  161 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYG---RIVTVSSMLG  161 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGG
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC---EEEEECChhh
Confidence            98887754    5899999999999888888999999999999999999999999999999887654   9999999987


Q ss_pred             ccC
Q 030328          177 QVG  179 (179)
Q Consensus       177 ~~g  179 (179)
                      ..+
T Consensus       162 ~~~  164 (281)
T 3s55_A          162 HSA  164 (281)
T ss_dssp             GSC
T ss_pred             cCC
Confidence            653

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.96  E-value=3.4e-28  Score=184.28  Aligned_cols=147  Identities=29%  Similarity=0.488  Sum_probs=125.7

Q ss_pred             CCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        29 ~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .+....+++|+++||||++|||+++|++|+++|++|++++|++++.++..+++....+.++..+.+|+++++++++++++
T Consensus        13 ~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~   92 (267)
T 1vl8_A           13 MKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEA   92 (267)
T ss_dssp             ----CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence            33445678999999999999999999999999999999999998887777766333466788899999999998877654


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC-ccc
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA-GQV  178 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~-g~~  178 (179)
                          ++++|+||||||.....++.+.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.+ +..
T Consensus        93 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g---~iv~isS~~~~~~  164 (267)
T 1vl8_A           93 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNP---SIINIGSLTVEEV  164 (267)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSC---EEEEECCGGGTCC
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc---EEEEECCcchhcc
Confidence                5799999999998877788889999999999999999999999999999876543   999999987 643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.96  E-value=4e-28  Score=183.27  Aligned_cols=144  Identities=26%  Similarity=0.394  Sum_probs=126.4

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||++|||++++++|+++|++|++++|++++.++..+++....+.++..+.+|++|++++++++++   
T Consensus         2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (263)
T 3ai3_A            2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS   81 (263)
T ss_dssp             CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999998887777776543356788899999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  149 (263)
T 3ai3_A           82 SFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGG---GAIIHNASICAVQ  149 (263)
T ss_dssp             HHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEECchhhcC
Confidence             578999999999887778888999999999999999999999999999987654   4999999998764

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.96  E-value=1.8e-28  Score=186.77  Aligned_cols=140  Identities=32%  Similarity=0.458  Sum_probs=124.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++    +.++..+.+|++|++++++++++    
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH----CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998877766655    56788899999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++++|+||||||.....++.+.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..|
T Consensus       101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~Iv~isS~~~~~~  168 (277)
T 3gvc_A          101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGG---AIVNLSSLAGQVA  168 (277)
T ss_dssp             HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EEEEECCGGGTSC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEEcchhhccC
Confidence            5899999999999888888899999999999999999999999999999887654   9999999987653

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.96  E-value=4.8e-29  Score=188.19  Aligned_cols=133  Identities=21%  Similarity=0.243  Sum_probs=114.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++||++|||||++|||+++|++|+++|++|++++|++++.           ..+...+.+|+++++++++++++    
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-----------LPEELFVEADLTTKEGCAIVAEATRQR   75 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-----------SCTTTEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-----------CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999976421           11223578999999998777654    


Q ss_pred             hCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|++|+||||||...  ..++.+.++|+|++.+++|+.++++++|+++|+|++++.|   +||++||.++..|
T Consensus        76 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G---~Iv~isS~~~~~~  145 (261)
T 4h15_A           76 LGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSG---VVVHVTSIQRVLP  145 (261)
T ss_dssp             TSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTSC
T ss_pred             cCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCc---eEEEEEehhhccC
Confidence            689999999999754  3578899999999999999999999999999999988765   9999999988653

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.96  E-value=4.7e-28  Score=181.45  Aligned_cols=140  Identities=38%  Similarity=0.543  Sum_probs=124.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|++++.++..+++.. .+.++..+.+|++|++++++++++    +
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA-AGAKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            36799999999999999999999999999999999999888877777654 356788899999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.++++|++.+++|+.|++.++++++|.|++++ +   +||++||.++..
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g---~iv~isS~~~~~  147 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-G---TVVQMSSIAGRV  147 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCGGGTC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-C---EEEEEccHHhcC
Confidence            8999999999988777888899999999999999999999999999998765 4   999999998764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.96  E-value=4.5e-28  Score=183.22  Aligned_cols=145  Identities=23%  Similarity=0.378  Sum_probs=126.3

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      +|...+++|+++||||++|||+++|++|+++|++|++++|++++.++..+++... +.++..+.+|++|++++++++++ 
T Consensus         4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~   82 (264)
T 3ucx_A            4 SMGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT-GRRALSVGTDITDDAQVAHLVDET   82 (264)
T ss_dssp             ---CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4555678999999999999999999999999999999999999888888877543 67789999999999998877654 


Q ss_pred             ---hCCCcEEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 ---AGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ---~~~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                         ++++|++|||||.. ...++.+.+.++|++.+++|+.+++++++.++|.|++++ +   +||++||.++..+
T Consensus        83 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g---~iv~isS~~~~~~  153 (264)
T 3ucx_A           83 MKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-G---AVVNVNSMVVRHS  153 (264)
T ss_dssp             HHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-C---EEEEECCGGGGCC
T ss_pred             HHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-C---EEEEECcchhccC
Confidence               58999999999985 557888899999999999999999999999999998764 3   9999999987643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.96  E-value=3.4e-28  Score=183.40  Aligned_cols=142  Identities=27%  Similarity=0.394  Sum_probs=124.4

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ...+++|++|||||++|||+++|++|+++|++|++++|+.++.++..+++    +.++..+.+|++|++++++++++   
T Consensus         3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~   78 (259)
T 4e6p_A            3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI----GPAAYAVQMDVTRQDSIDAAIAATVE   78 (259)
T ss_dssp             -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999998887776655    45678899999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|+||||||.....++.+.++++|++.+++|+.+++++++++.|.|.+++.  .++||++||.++..|
T Consensus        79 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~  148 (259)
T 4e6p_A           79 HAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGR--GGKIINMASQAGRRG  148 (259)
T ss_dssp             HSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGTSC
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEEECChhhccC
Confidence             579999999999988888889999999999999999999999999999987652  249999999987653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.96  E-value=2.1e-28  Score=186.98  Aligned_cols=143  Identities=31%  Similarity=0.510  Sum_probs=124.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-------HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-------KLEEAKQSIQLATGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-------~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~  104 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+++       .+++..+++.. .+.++..+.+|++|.+++++
T Consensus         4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~   82 (285)
T 3sc4_A            4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEE-AGGQALPIVGDIRDGDAVAA   82 (285)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH-HTSEEEEEECCTTSHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHH
Confidence            34578999999999999999999999999999999999876       35555555543 36789999999999999888


Q ss_pred             HHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          105 ALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       105 ~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++    ++++|++|||||.....++.+.+.++|++++++|+.+++.++++++|.|++++.+   +||++||.++..
T Consensus        83 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~iv~isS~~~~~  157 (285)
T 3sc4_A           83 AVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNP---HILTLSPPIRLE  157 (285)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSC---EEEECCCCCCCS
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc---EEEEECChhhcc
Confidence            7654    5899999999999888889999999999999999999999999999999876654   999999987754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.96  E-value=5.3e-28  Score=183.02  Aligned_cols=143  Identities=30%  Similarity=0.403  Sum_probs=124.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ..+++|+++||||++|||+++|++|+++|++|++++|++++.++..+++.... +.++..+.+|++|++++++++++   
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   88 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   88 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999988877777665432 56788899999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|+||||||.... .++.+.+.++|++.+++|+.|++.+++.++|.|++++.+   +||++||.++..
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  157 (267)
T 1iy8_A           89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG---MVVNTASVGGIR  157 (267)
T ss_dssp             HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCGGGTS
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC---EEEEEcchhhcc
Confidence             5899999999998766 678889999999999999999999999999999876544   999999988754

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.96  E-value=2.6e-28  Score=185.11  Aligned_cols=143  Identities=31%  Similarity=0.418  Sum_probs=124.7

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++| +.+..++..+++.. .+.++..+.+|++|.+++++++++  
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~v~~~~~~~~  101 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA-AGGEAFAVKADVSQESEVEALFAAVI  101 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999998 55666666666644 366788999999999998877654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|+||||||.....++.+.+.++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..
T Consensus       102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  170 (269)
T 4dmm_A          102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSG---RIINIASVVGEM  170 (269)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc---EEEEECchhhcC
Confidence              5899999999999888888899999999999999999999999999999887654   999999987654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.96  E-value=4.4e-28  Score=185.07  Aligned_cols=142  Identities=30%  Similarity=0.401  Sum_probs=124.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+++|++|||||++|||+++|++|+++|++|++++|+.+..++..+++.. .+.++..+.+|++|++++++++++    
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG-AGGQAIALEADVSDELQMRNAVRDLVLK  102 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999988888877754 356788999999999998877654    


Q ss_pred             hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.... .++.+.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..
T Consensus       103 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~Iv~isS~~~~~  170 (283)
T 3v8b_A          103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGG---AIVVVSSINGTR  170 (283)
T ss_dssp             HSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCSBTTT
T ss_pred             hCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc---eEEEEcChhhcc
Confidence            5899999999998654 788889999999999999999999999999999887654   999999988754

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.96  E-value=2.6e-28  Score=185.21  Aligned_cols=144  Identities=24%  Similarity=0.309  Sum_probs=122.8

Q ss_pred             CCCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH
Q 030328           28 PKPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        28 ~~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      |.+|...+++|+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++..+.+|++|.++++++++
T Consensus         2 p~~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~   77 (271)
T 3tzq_B            2 PGSMTAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV----GRGAVHHVVDLTNEVSVRALID   77 (271)
T ss_dssp             -----CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH----CTTCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----CCCeEEEECCCCCHHHHHHHHH
Confidence            345666789999999999999999999999999999999999998877766655    4567889999999999888765


Q ss_pred             h----hCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          108 E----AGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       108 ~----~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +    ++++|++|||||...  ..++.+.+.++|++.+++|+.++++++++++|.|++++.+   +||++||.++..
T Consensus        78 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~iv~isS~~~~~  151 (271)
T 3tzq_B           78 FTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGG---AIVNISSATAHA  151 (271)
T ss_dssp             HHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EEEEECCGGGTS
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEECCHHHcC
Confidence            4    589999999999873  4567788999999999999999999999999999887644   999999998764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.96  E-value=4.3e-28  Score=184.63  Aligned_cols=140  Identities=26%  Similarity=0.366  Sum_probs=124.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++    +.++..+.+|++|.+++++++++    
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI----GSKAFGVRVDVSSAKDAESMVEKTTAK   98 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999998877666653    56788899999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++++|+||||||.....++.+.++++|++.+++|+.|++.++++++|.|++++.   ++||++||.++..|
T Consensus        99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~  166 (277)
T 4dqx_A           99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGG---GSIINTTSYTATSA  166 (277)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTC---EEEEEECCGGGTSC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC---cEEEEECchhhCcC
Confidence            589999999999988888889999999999999999999999999999987654   49999999987643

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.96  E-value=4.4e-28  Score=182.63  Aligned_cols=142  Identities=32%  Similarity=0.383  Sum_probs=125.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|++|||||++|||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|++++++++++    +
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ-FPGQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-STTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999999999999999999999988888777753 356788999999999998887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.++++++++++|.|.+++.  .++||++||.++..
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~  148 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGI--KGNIINMVATYAWD  148 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEECCGGGGS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC--CcEEEEECchhhcc
Confidence            89999999999888888899999999999999999999999999999965542  24999999998764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.96  E-value=2.3e-28  Score=183.25  Aligned_cols=139  Identities=27%  Similarity=0.397  Sum_probs=123.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|+++..++..+++    +.++..+.+|++|++++++++++    +
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI----GKKARAIAADISDPGSVKALFAEIQALT   78 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH----CTTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            468999999999999999999999999999999999998877766655    56788899999999998887764    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.  .++||++||.++..
T Consensus        79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~  145 (247)
T 3rwb_A           79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGK--AGRVISIASNTFFA  145 (247)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CcEEEEECchhhcc
Confidence            89999999999988888899999999999999999999999999999988652  24999999987653

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.96  E-value=5.5e-28  Score=184.16  Aligned_cols=144  Identities=31%  Similarity=0.414  Sum_probs=125.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-------------ChhHHHHHHHHHHhhcCceEEEEEeeCCCH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-------------SGEKLEEAKQSIQLATGIEVATYSADVRDF   99 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-------------~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   99 (179)
                      ..+++|+++||||++|||+++|++|+++|++|++++|             ++++.++..+++.. .+.++..+.+|++|+
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED-QGRKALTRVLDVRDD   89 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT-TTCCEEEEECCTTCH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHh-cCCeEEEEEcCCCCH
Confidence            3578999999999999999999999999999999998             56667766666643 367788999999999


Q ss_pred             HHHHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          100 DAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       100 ~~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +++++++++    ++++|+||||||.....++.+.++++|++.+++|+.++++++++++|.|++++.  .++||++||.+
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~g~iv~isS~~  167 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGN--GGSIVVVSSSA  167 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS--CEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--CCEEEEEcchh
Confidence            998887654    589999999999988888889999999999999999999999999999988752  24999999998


Q ss_pred             cccC
Q 030328          176 GQVG  179 (179)
Q Consensus       176 g~~g  179 (179)
                      +..|
T Consensus       168 ~~~~  171 (280)
T 3pgx_A          168 GLKA  171 (280)
T ss_dssp             GTSC
T ss_pred             hccC
Confidence            7653

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.96  E-value=2.6e-28  Score=184.84  Aligned_cols=141  Identities=25%  Similarity=0.389  Sum_probs=117.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ..++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++..+.+|++|++++++++++   
T Consensus        22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (266)
T 3grp_A           22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL----GKDVFVFSANLSDRKSIKQLAEVAER   97 (266)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceEEEEeecCCHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999988877665543    56788999999999999887764   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|+||||||.....++.+.++++|++.+++|+.+++.++++++|.|++++.+   +||++||.++..|
T Consensus        98 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~Iv~isS~~~~~~  166 (266)
T 3grp_A           98 EMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYG---RIINITSIVGVVG  166 (266)
T ss_dssp             HHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCC-----
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---EEEEECCHHHcCC
Confidence             5899999999999888888889999999999999999999999999999887654   9999999887643

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.96  E-value=1e-27  Score=180.81  Aligned_cols=142  Identities=22%  Similarity=0.422  Sum_probs=125.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++... +.++..+.+|++|++++++++++    
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK-GFKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998887777766533 56788899999999998887754    


Q ss_pred             h-CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 A-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~-~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      + +++|++|||||.....++.+.+.++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  151 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASER---GNVVFISSVSGAL  151 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSS---EEEEEECCGGGTS
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---cEEEEEcchhhcc
Confidence            4 78999999999887778888999999999999999999999999999987654   4999999988754

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.96  E-value=5e-28  Score=183.91  Aligned_cols=142  Identities=30%  Similarity=0.441  Sum_probs=123.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-------HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-------LEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.++       .++..+++.. .+.++..+.+|++|.++++++
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNA-AGGQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHH-HTSEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHH
Confidence            45789999999999999999999999999999999998753       4555555443 367889999999999998887


Q ss_pred             HHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          106 LDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       106 ~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++    ++++|++|||||.....++.+.+.++|++++++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~iv~isS~~~~~  154 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNP---HILTLAPPPSLN  154 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSC---EEEECCCCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCc---eEEEECChHhcC
Confidence            654    5899999999999888888899999999999999999999999999999877654   999999988754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.96  E-value=3.8e-28  Score=180.78  Aligned_cols=136  Identities=24%  Similarity=0.388  Sum_probs=115.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .+|+++||||++|||+++|++|+++|++|++++|+++++++..+++.    .++..+.+|++|.+++++++++    +++
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   77 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG----NAVIGIVADLAHHEDVDVAFAAAVEWGGL   77 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc----CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999999988887776662    3588899999999998877654    589


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|++|||||.....++.+.+.++|++.+++|+.|++.++++++|.|++++    ++||++||.++..|
T Consensus        78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~----~~iv~isS~~~~~~  141 (235)
T 3l6e_A           78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG----GVLANVLSSAAQVG  141 (235)
T ss_dssp             CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----EEEEEECCEECCSS
T ss_pred             CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC----CEEEEEeCHHhcCC
Confidence            99999999998878888899999999999999999999999999997654    29999999987653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.96  E-value=6.4e-28  Score=183.60  Aligned_cols=142  Identities=27%  Similarity=0.403  Sum_probs=127.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|++++++++++    +
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG-VGGKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999988888877754 356788899999999998887764    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.|++.++++++|.|++++.  .++||++||.++..
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~--~g~iv~isS~~~~~  174 (276)
T 3r1i_A          108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGL--GGTIITTASMSGHI  174 (276)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcEEEEECchHhcc
Confidence            79999999999988888889999999999999999999999999999988753  24999999988754

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.96  E-value=5.9e-28  Score=184.02  Aligned_cols=141  Identities=30%  Similarity=0.406  Sum_probs=123.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|++|||||++|||+++|++|+++|++|++++|+++..++..+++... +.++..+.+|++|.+++++++++    ++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA-GHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999999999888888777543 66789999999999998877654    58


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcH--HHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP--LIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|+||||||.....++.+.++++|++.+++|+.|++.++++++|  .|++++.+   +||++||.++..|
T Consensus       101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g---~iV~isS~~~~~~  168 (279)
T 3sju_A          101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWG---RIVNIASTGGKQG  168 (279)
T ss_dssp             SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCE---EEEEECCGGGTSC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCc---EEEEECChhhccC
Confidence            999999999998888889999999999999999999999999999  57766543   9999999987653

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.96  E-value=1.4e-27  Score=180.32  Aligned_cols=142  Identities=32%  Similarity=0.444  Sum_probs=126.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|++|||||++|||+++|++|+++|++|++++|+++..++..+++... +.++..+.+|+++.+++++++++    +
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA-GGEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-CCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999888887777543 66789999999999998887654    5


Q ss_pred             CCCcEEEecCCC-CCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|+||||||. ....++.+.+.++|++.+++|+.|++.+++.++|.|++++.+   +||++||.++..+
T Consensus       105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~~  172 (262)
T 3rkr_A          105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRG---HIINISSLAGKNP  172 (262)
T ss_dssp             SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC---EEEEECSSCSSCC
T ss_pred             CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc---eEEEEechhhcCC
Confidence            899999999998 455678889999999999999999999999999999887654   9999999987653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.96  E-value=1.4e-27  Score=181.30  Aligned_cols=142  Identities=27%  Similarity=0.437  Sum_probs=125.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|++++++++++    
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-KGLNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999888777776654 256788899999999999887754    


Q ss_pred             h-CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 A-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~-~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      + +++|+||||||.....++.+.+.++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~---g~iv~isS~~~~~  163 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN---GNVIFLSSIAGFS  163 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS---EEEEEECCGGGTS
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---cEEEEEcCHhhcC
Confidence            4 79999999999887778888999999999999999999999999999987654   3999999998764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.96  E-value=1e-28  Score=187.88  Aligned_cols=142  Identities=24%  Similarity=0.376  Sum_probs=126.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---h
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---A  109 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~  109 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|.+++++++++   .
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA-SGGTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH-TTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-cCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999999999999888877777754 367788999999999998877654   3


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~Iv~isS~~~~~  173 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWG---RVVSIGSINQLR  173 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEECCHHhCC
Confidence            789999999999888888899999999999999999999999999999887654   999999988754

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.96  E-value=7.5e-28  Score=181.50  Aligned_cols=139  Identities=24%  Similarity=0.282  Sum_probs=123.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ++|++|||||++|||+++|++|+++|++|+++ +|+++..++..+++.. .+.++..+.+|++|.+++++++++    ++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK-LGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT-TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            68999999999999999999999999999987 8888888877777753 366789999999999999887765    58


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|+||||||.....++.+.+.++|++.+++|+.++++++++++|.|++++.   ++||++||.++..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~---g~iv~isS~~~~~  146 (258)
T 3oid_A           82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGG---GHIVSISSLGSIR  146 (258)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC---EEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC---cEEEEECchhhCC
Confidence            9999999999888888889999999999999999999999999999988654   4999999998764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.96  E-value=1.4e-27  Score=183.76  Aligned_cols=143  Identities=35%  Similarity=0.522  Sum_probs=127.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|+++..++..+++... +.++..+.+|++|.+++++++++    +
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ-GFDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            378999999999999999999999999999999999999988888877543 66789999999999998887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.|++.+++.++|.|++++.  .++||++||.++..|
T Consensus       107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--~g~iv~isS~~~~~~  174 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGT--GGHIAFTASFAGLVP  174 (301)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS--CEEEEEECCGGGTSC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC--CcEEEEeCchhhcCC
Confidence            79999999999988888889999999999999999999999999999988652  249999999988653

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.7e-28  Score=184.45  Aligned_cols=143  Identities=26%  Similarity=0.416  Sum_probs=127.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC---eEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh-
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA---RVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .+++|+++||||++|||+++|++|+++|+   +|++++|+++.+++..+++.... +.++..+.+|++|.+++++++++ 
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999998   99999999999888888876543 67889999999999999998875 


Q ss_pred             ---hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 ---AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ---~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                         ++++|+||||||... ..++.+.+.++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..|
T Consensus       110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~IV~isS~~~~~~  181 (287)
T 3rku_A          110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSG---DIVNLGSIAGRDA  181 (287)
T ss_dssp             CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCGGGTSC
T ss_pred             HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---eEEEECChhhcCC
Confidence               478999999999875 5678889999999999999999999999999999887655   9999999987653

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.96  E-value=7e-28  Score=183.69  Aligned_cols=148  Identities=22%  Similarity=0.336  Sum_probs=120.9

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ++...+++|+++||||++|||+++|++|+++|++|+++++ +++..++..+++.. .+.++.++.+|++|++++++++++
T Consensus        22 ~mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           22 SMMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSG-LGARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             -CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH-TTCCEEEEECCTTSGGGHHHHHHH
T ss_pred             hhhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHH
Confidence            3445678999999999999999999999999999999995 66667777666654 367789999999999988777654


Q ss_pred             ----hCCCcEEEecCCC--CCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ----AGPVDVLVVNQGV--FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ----~~~id~li~~ag~--~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                          ++++|+||||||.  ....++.+.++++|++.+++|+.|+++++++++|.|++++.+..++||++||.++..
T Consensus       101 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~  176 (280)
T 4da9_A          101 VVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM  176 (280)
T ss_dssp             HHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----
T ss_pred             HHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc
Confidence                5899999999998  445678889999999999999999999999999999887643456999999998764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.96  E-value=1.5e-27  Score=181.25  Aligned_cols=143  Identities=27%  Similarity=0.372  Sum_probs=123.4

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH---h
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD---E  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~---~  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+ +..++..+++.. .+.++..+.+|++|.++++++.+   +
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (273)
T 3uf0_A           26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIAD-GGGSAEAVVADLADLEGAANVAEELAA  103 (273)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHT-TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999999966 445555555543 36778999999999999887644   3


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      .+++|+||||||.....++.+.+.++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..|
T Consensus       104 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~IV~isS~~~~~~  171 (273)
T 3uf0_A          104 TRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSG---RIVTIASMLSFQG  171 (273)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTSC
T ss_pred             cCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEEcchHhcCC
Confidence            5799999999999888889999999999999999999999999999999887654   9999999987653

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.96  E-value=8.5e-28  Score=181.23  Aligned_cols=141  Identities=28%  Similarity=0.432  Sum_probs=124.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++||||++|||++++++|+++|++|++++|+++. .++..+++....+.++..+.+|++|++++++++++    +
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999887 77777666543356788899999999998887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.++++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  147 (260)
T 1x1t_A           82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF---GRIINIASAHGLV  147 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEEECcHHhCc
Confidence            79999999999887778888999999999999999999999999999987654   4999999998764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.96  E-value=9.7e-28  Score=180.76  Aligned_cols=142  Identities=17%  Similarity=0.232  Sum_probs=122.8

Q ss_pred             cCcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH---
Q 030328           33 IPIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD---  107 (179)
Q Consensus        33 ~~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~---  107 (179)
                      ++++||+++||||+|  |||+++|++|+++|++|++++|+++..++..+++....+.++..+.+|++++++++++++   
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            468999999999875  999999999999999999999999988888888776666788899999999999877765   


Q ss_pred             -hhCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          108 -EAGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       108 -~~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++|++|++|||||....    .++.+.++++|+..+++|..+++.+++.+.|.|++  +   ++||++||.+|..|
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~--~---G~IVnisS~~~~~~  153 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE--G---GSIVATTYLGGEFA  153 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT--C---EEEEEEECGGGTSC
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc--C---CEEEEEeccccccC
Confidence             46899999999997653    34567889999999999999999999999887643  2   49999999988754

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.96  E-value=1.2e-27  Score=179.06  Aligned_cols=141  Identities=26%  Similarity=0.387  Sum_probs=126.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++... +.++..+.+|++|++++++++++    +
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK-GFKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999999999888877777543 66789999999999999887765    4


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++.+++.++|.|.+++.+   +||++||.++..
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  146 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWG---RIISIGSVVGSA  146 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCTHHHH
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe---EEEEEcchhhcc
Confidence            789999999999888888899999999999999999999999999999887654   999999987653

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.96  E-value=1.3e-27  Score=180.48  Aligned_cols=141  Identities=28%  Similarity=0.434  Sum_probs=123.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|+++..++..+++... +.++..+.+|++|++++++++++    +
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-GVEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999998887777766533 56788899999999998877654    5


Q ss_pred             CCCcEEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.. ...++.+.+.++|++.+++|+.+++.+++.+.|.|++++.   ++||++||.++..
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  149 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY---GRIVNTASMAGVK  149 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCHHHHS
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---cEEEEEcchhhcc
Confidence            7999999999987 5667888999999999999999999999999999987654   3999999987654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.96  E-value=1.5e-27  Score=179.04  Aligned_cols=142  Identities=27%  Similarity=0.351  Sum_probs=121.5

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+.+++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|++++++++++   
T Consensus         4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T 3qiv_A            4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA-DGGTAISVAVDVSDPESAKAMADRTLA   82 (253)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999988888877754 366788999999999998887764   


Q ss_pred             -hCCCcEEEecCCCC---CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 -AGPVDVLVVNQGVF---VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 -~~~id~li~~ag~~---~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++++|++|||||..   ...++.+.++++|++.+++|+.+++++++.++|.|++++.+   +||++||.++.
T Consensus        83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~  152 (253)
T 3qiv_A           83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGG---AIVNQSSTAAW  152 (253)
T ss_dssp             HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE---EEEEECC----
T ss_pred             HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC---EEEEECCcccc
Confidence             57999999999984   33456778999999999999999999999999999887654   99999998764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.96  E-value=1.8e-27  Score=176.72  Aligned_cols=139  Identities=32%  Similarity=0.418  Sum_probs=123.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      ++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++....+.++.++.+|++|++++++++++    +++
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999999999999999988888887655678899999999999999887653    579


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.....++.+.+.++|++.+++|+.|++.++++++|.|.+.. +   +++++||..+..
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~---~ii~~sS~~~~~  143 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG-G---LALVTTSDVSAR  143 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCGGGSS
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C---cEEEEecchhcc
Confidence            99999999998888889999999999999999999999999999995443 3   888888877654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.96  E-value=2.6e-27  Score=178.53  Aligned_cols=142  Identities=23%  Similarity=0.342  Sum_probs=123.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      +.+++|+++||||++|||++++++|+++|++|++++|++++.++..+++.... +.++..+.+|++|++++++++++   
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD   82 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999988877777665321 33688899999999999887764   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++ +|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  149 (260)
T 2z1n_A           83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGW---GRMVYIGSVTLLR  149 (260)
T ss_dssp             TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC---cEEEEECchhhcC
Confidence             46 999999999877778888999999999999999999999999999987654   4999999988764

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.96  E-value=1.1e-27  Score=179.31  Aligned_cols=140  Identities=34%  Similarity=0.455  Sum_probs=122.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +.+|+++||||++|||+++|++|+++|++|++++++ ++..++..+++.. .+.++..+.+|++|.+++++++++    +
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA-KGVDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            368999999999999999999999999999998874 4666666666644 367788999999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  146 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSG---AIINLSSVVGAV  146 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC---EEEEEcchhhcC
Confidence            899999999999888888899999999999999999999999999999887654   999999987653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.96  E-value=3.2e-27  Score=178.50  Aligned_cols=143  Identities=25%  Similarity=0.280  Sum_probs=127.7

Q ss_pred             CcCCcEEEEEcCC-CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGS-SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||+ +|||+++|++|+++|++|++++|+.+..++..+++....+.++.++.+|++|.+++++++++    
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            4789999999997 59999999999999999999999999988888888665567899999999999998887654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.  .++||++||.++..
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~  166 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDH--GGVIVNNASVLGWR  166 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSC--CEEEEEECCGGGTC
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEEeCCHHHcC
Confidence            589999999999988888889999999999999999999999999999987632  35999999988764

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.96  E-value=1.5e-27  Score=181.14  Aligned_cols=141  Identities=26%  Similarity=0.359  Sum_probs=121.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+.+|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++..+.+|++|++++++++++    +
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  100 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI----GDDALCVPTDVTDPDSVRALFTATVEKF  100 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TSCCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            467999999999999999999999999999999999998887776665    35678899999999998887654    5


Q ss_pred             CCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|+||||||.... .++.+.++++|++.+++|+.|++.++++++|.|++++. ..++||++||.++..|
T Consensus       101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-~~g~IV~isS~~~~~~  170 (272)
T 4dyv_A          101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEP-RGGRIINNGSISATSP  170 (272)
T ss_dssp             SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSS-CCEEEEEECCSSTTSC
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC-CCcEEEEECchhhcCC
Confidence            899999999998765 67888999999999999999999999999999987652 1349999999988653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.96  E-value=1.4e-27  Score=178.71  Aligned_cols=140  Identities=29%  Similarity=0.397  Sum_probs=122.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++||||++|||+++|++|+++|++|++++| ++++.++..+++.. .+.++..+.+|++|++++++++++    +
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK-LGSDAIAVRADVANAEDVTNMVKQTVDVF   80 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999 77777777666643 256788899999999998887764    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  146 (246)
T 2uvd_A           81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRH---GRIVNIASVVGVT  146 (246)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEECCHHhcC
Confidence            78999999999887778888999999999999999999999999999987654   4999999987643

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.95  E-value=3.4e-27  Score=176.97  Aligned_cols=138  Identities=28%  Similarity=0.384  Sum_probs=119.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|++ ++.++   ++. ..+.++..+.+|++|++++++++++    
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIR-NLGRRVLTVKCDVSQPGDVEAFGKQVIST   79 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHH-hcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998 65554   222 2356788899999999998887654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||.....++.+.+.++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  146 (249)
T 2ew8_A           80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW---GRIINLTSTTYWL  146 (249)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGGS
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---eEEEEEcchhhcc
Confidence            589999999999887778888999999999999999999999999999987654   4999999988764

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.95  E-value=2.4e-27  Score=178.32  Aligned_cols=137  Identities=30%  Similarity=0.407  Sum_probs=120.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++..+.+|++|++++++++++    ++
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999988776655544    35678899999999998877654    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        79 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  143 (254)
T 1hdc_A           79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG---GSIVNISSAAGLM  143 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC---CEEEEECchhhcc
Confidence            8999999999887778888999999999999999999999999999987654   4999999988764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.95  E-value=1.4e-27  Score=182.02  Aligned_cols=140  Identities=32%  Similarity=0.421  Sum_probs=124.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|++|||||++|||+++|++|+++|++|++++|+++.+++..+++.. .+.++..+.+|++|++++++++++    +
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG-GGGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT-TTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999999988888777753 366788999999999998887654    5


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|+||||||... ..++.+.+.++|++.+++|+.|++.++++++|.|++++.+   +||++||.++.
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~  149 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGG---SLTFTSSFVGH  149 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE---EEEEECCSBTT
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC---EEEEEcChhhC
Confidence            89999999999764 4678889999999999999999999999999999887654   99999998875

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.95  E-value=1.1e-27  Score=180.25  Aligned_cols=136  Identities=24%  Similarity=0.405  Sum_probs=121.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++..+.+|++|++++++++++    +
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----GPRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999998877766655    45788999999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++++++++.|.|++.     ++||++||.++..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-----g~iv~isS~~~~~  144 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-----GSIVFTSSVADEG  144 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-----EEEEEECCGGGSS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-----CEEEEECChhhcC
Confidence            899999999999888888999999999999999999999999999998552     3999999998764

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.95  E-value=8.7e-28  Score=181.95  Aligned_cols=139  Identities=34%  Similarity=0.465  Sum_probs=118.6

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      +...+.+|+++||||++|||+++|++|+++|++|++++|+.+++++.       ....+..+.+|++|.+++++++++  
T Consensus        10 m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~-------~~~~~~~~~~Dv~d~~~v~~~~~~~~   82 (266)
T 3p19_A           10 MGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL-------NLPNTLCAQVDVTDKYTFDTAITRAE   82 (266)
T ss_dssp             -----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT-------CCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh-------hcCCceEEEecCCCHHHHHHHHHHHH
Confidence            34457899999999999999999999999999999999997765432       123578899999999998877654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        ++++|+||||||.....++.+.+.++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..+
T Consensus        83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g---~IV~isS~~~~~~  152 (266)
T 3p19_A           83 KIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCG---TIINISSIAGKKT  152 (266)
T ss_dssp             HHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCGGGTSC
T ss_pred             HHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEEcChhhCCC
Confidence              5899999999999888888899999999999999999999999999999887655   9999999987653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.95  E-value=5.9e-27  Score=181.64  Aligned_cols=146  Identities=27%  Similarity=0.423  Sum_probs=127.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++.+|++|||||+||||+++|++|+++|++|++++|+++..++..+++.... +.++..+.+|+++.++++++++.    
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999999998888888776532 23788999999999998887765    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhc---cCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKR---QNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~~~~~iv~iss~~g~~g  179 (179)
                      ++++|+||||||.....++.+.+.++|+.++++|+.|++++++.++|.|.++   +....++||++||.++..+
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~  158 (319)
T 3ioy_A           85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA  158 (319)
T ss_dssp             TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC
Confidence            4899999999999888889999999999999999999999999999999876   1112359999999988653

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.95  E-value=4.5e-27  Score=177.43  Aligned_cols=138  Identities=27%  Similarity=0.355  Sum_probs=121.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|++++.++..+++.    .++..+.+|++|++++++++++    +
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh----cCceEEEecCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999999887776665553    2477889999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.+.++|++.+++|+.+++++++.++|.|++++.   ++||++||.++..
T Consensus        80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  145 (260)
T 1nff_A           80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR---GSIINISSIEGLA  145 (260)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---CEEEEEeehhhcC
Confidence            78999999999887777888999999999999999999999999999987654   4999999988754

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.95  E-value=4.6e-27  Score=175.69  Aligned_cols=144  Identities=28%  Similarity=0.406  Sum_probs=124.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeC--CCHHHHHHHHHh--
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV--RDFDAVKTALDE--  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~--~~~~~v~~~~~~--  108 (179)
                      ..+++|+++||||++|||+++|++|+++|++|++++|++++.++..+++....+.....+.+|+  ++.+++++++++  
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999988888888665445667777777  999998877654  


Q ss_pred             --hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 --AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 --~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        ++++|++|||||... ..++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..|
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~---~~iv~isS~~~~~~  160 (247)
T 3i1j_A           90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSED---ASIAFTSSSVGRKG  160 (247)
T ss_dssp             HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS---EEEEEECCGGGTSC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC---CeEEEEcchhhcCC
Confidence              579999999999864 467888999999999999999999999999999987654   49999999887643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.95  E-value=3.8e-27  Score=182.59  Aligned_cols=143  Identities=29%  Similarity=0.487  Sum_probs=123.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC------------hhHHHHHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS------------GEKLEEAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~------------~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      .+++|++|||||++|||+++|++|+++|++|++++|+            .+++++..+++.. .+.++..+.+|++|+++
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE-QGRRIIARQADVRDLAS  121 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHH
Confidence            4789999999999999999999999999999999886            5556665555543 36788999999999999


Q ss_pred             HHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          102 VKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       102 v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++++++    ++++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.  .++||++||.++.
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--~g~Iv~isS~~~~  199 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQ--GGSVIFVSSTVGL  199 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCS--CEEEEEECCGGGS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CCEEEEECcHHhc
Confidence            8887654    589999999999988888889999999999999999999999999999987652  2499999999876


Q ss_pred             cC
Q 030328          178 VG  179 (179)
Q Consensus       178 ~g  179 (179)
                      .|
T Consensus       200 ~~  201 (317)
T 3oec_A          200 RG  201 (317)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.95  E-value=6.2e-27  Score=176.42  Aligned_cols=143  Identities=28%  Similarity=0.420  Sum_probs=123.6

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+.+++|+++||||++|||+++|++|+++|++|++++|+++..++..+++    +.++..+.+|++|.+++++++++   
T Consensus         4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (261)
T 3n74_A            4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI----GDAALAVAADISKEADVDAAVEAALS   79 (261)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999998887766654    45688899999999998877654   


Q ss_pred             -hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc-CCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ-NGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||... ..++.+.++++|++.+++|+.+++.+++.++|.|++++ ++..++|+++||.++..
T Consensus        80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  152 (261)
T 3n74_A           80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR  152 (261)
T ss_dssp             HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS
T ss_pred             hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC
Confidence             579999999999876 56777889999999999999999999999999998764 22346899999988764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.95  E-value=2.6e-27  Score=180.22  Aligned_cols=144  Identities=26%  Similarity=0.419  Sum_probs=124.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++.. .+ ++..+.+|++|++++++++++    
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-~~-~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA-YG-DCQAIPADLSSEAGARRLAQALGEL  102 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT-SS-CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cC-ceEEEEeeCCCHHHHHHHHHHHHHh
Confidence            357899999999999999999999999999999999999888777776643 23 688889999999998887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC-CCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN-GGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||.....++.+.++++|++.+++|+.+++.+++.++|.|++++. ...++||++||.++..
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~  173 (276)
T 2b4q_A          103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS  173 (276)
T ss_dssp             CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC
Confidence            578999999999887778888999999999999999999999999999987653 1225999999988754

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.95  E-value=5.4e-27  Score=176.66  Aligned_cols=139  Identities=24%  Similarity=0.312  Sum_probs=121.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH--HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK--LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +|+++||||++|||+++|++|+++|++|++++|+++.  .++..+++.. .+.++..+.+|++|++++++++++    ++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA-ADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT-TTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999999999999877  6666666643 256788899999999998877654    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|+||||||.....++.+.++++|++.+++|+.+++.+++.+.|.|++++.  .++||++||.++..
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~  146 (258)
T 3a28_C           81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGV--KGKIINAASIAAIQ  146 (258)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CCEEEEECCGGGTS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--CcEEEEECcchhcc
Confidence            9999999999887778888999999999999999999999999999987653  13999999988764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.95  E-value=2.6e-27  Score=179.66  Aligned_cols=143  Identities=27%  Similarity=0.347  Sum_probs=123.3

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+. +..++..+++. ..+.++..+.+|+++.+++++++++  
T Consensus        24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~  102 (271)
T 4iin_A           24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELE-EKGYKAAVIKFDAASESDFIEAIQTIV  102 (271)
T ss_dssp             CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH-hcCCceEEEECCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999954 44455544443 3467889999999999998887764  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        .+++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus       103 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  171 (271)
T 4iin_A          103 QSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFG---SVVNVASIIGER  171 (271)
T ss_dssp             HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHH
T ss_pred             HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC---EEEEEechhhcC
Confidence              4799999999999888888889999999999999999999999999999887654   999999987653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.95  E-value=1.9e-27  Score=178.04  Aligned_cols=142  Identities=23%  Similarity=0.321  Sum_probs=113.7

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ....+.++|++|||||++|||+++|++|+++|++|++++|+++.+++..+++    ..++....+|+++.+++++++++.
T Consensus         7 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A            7 HHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL----KDNYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             --CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred             cccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----ccCccEEEcCCCCHHHHHHHHHhc
Confidence            3444678999999999999999999999999999999999998887766655    346788899999999999999988


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++.++++++|.|.+++.+   +||++||.++..
T Consensus        83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  148 (249)
T 3f9i_A           83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYG---RIINISSIVGIA  148 (249)
T ss_dssp             SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCCCC--
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---EEEEEccHHhcc
Confidence            899999999998887777788899999999999999999999999999887654   999999998764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.95  E-value=7e-27  Score=177.76  Aligned_cols=141  Identities=33%  Similarity=0.490  Sum_probs=118.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC------------hhHHHHHHHHHHhhcCceEEEEEeeCCCH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS------------GEKLEEAKQSIQLATGIEVATYSADVRDF   99 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~------------~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   99 (179)
                      ..++++|++|||||++|||+++|++|+++|++|++++|+            .++.++..+++.. .+.++..+.+|++|+
T Consensus         8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~   86 (278)
T 3sx2_A            8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED-IGSRIVARQADVRDR   86 (278)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH-HTCCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHh-cCCeEEEEeCCCCCH
Confidence            446789999999999999999999999999999999987            5666666555543 367889999999999


Q ss_pred             HHHHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          100 DAVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       100 ~~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +++++++++    ++++|+||||||......    ++++|++.+++|+.++++++++++|.|.+++.  .++||++||.+
T Consensus        87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~g~iv~isS~~  160 (278)
T 3sx2_A           87 ESLSAALQAGLDELGRLDIVVANAGIAPMSA----GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGT--GGSIVLISSSA  160 (278)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCSS----THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS--CEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--CcEEEEEccHH
Confidence            998887764    589999999999765433    58999999999999999999999999988642  24999999998


Q ss_pred             cccC
Q 030328          176 GQVG  179 (179)
Q Consensus       176 g~~g  179 (179)
                      +..|
T Consensus       161 ~~~~  164 (278)
T 3sx2_A          161 GLAG  164 (278)
T ss_dssp             GTSC
T ss_pred             hcCC
Confidence            7653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.95  E-value=4.7e-27  Score=184.00  Aligned_cols=142  Identities=30%  Similarity=0.416  Sum_probs=124.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-------HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-------LEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      ..+++|+++||||++|||+++|++|+++|++|++++|++++       +++..+++.. .+.++..+.+|++|+++++++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~-~g~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEA-VGGKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHh-cCCeEEEEEccCCCHHHHHHH
Confidence            45789999999999999999999999999999999998764       4455555543 367889999999999998887


Q ss_pred             HHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          106 LDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       106 ~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++    ++++|+||||||.....++.+.+.++|++++++|+.+++.++++++|.|++++.+   +||++||.++..
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g---~IV~iSS~~~~~  193 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVA---HILNISPPLNLN  193 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSC---EEEEECCCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC---EEEEECCHHHcC
Confidence            764    5899999999999888888899999999999999999999999999999876644   999999988653

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.95  E-value=6.6e-27  Score=175.98  Aligned_cols=139  Identities=30%  Similarity=0.389  Sum_probs=122.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +|+++||||++|||++++++|+++|++|++++|++++.++..+++... +.++..+.+|++|.+++++++++    ++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA-GGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999999999999998887777766543 55788899999999998887654    5789


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |+||||||.....++.+.++++|++.+++|+.+++.+++.++|.|++++.  .++||++||.++..
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~  144 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH--GGKIINACSQAGHV  144 (256)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGTS
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CCEEEEECchhhcC
Confidence            99999999887778888999999999999999999999999999987651  24999999988764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.95  E-value=2.2e-27  Score=179.16  Aligned_cols=141  Identities=18%  Similarity=0.255  Sum_probs=113.8

Q ss_pred             CCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        29 ~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ....+++++|++|||||++|||+++|++|+++|++|++++|++++..+..++.    +  +..+.+|++|++++++++++
T Consensus        19 ~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~Dv~~~~~v~~~~~~   92 (260)
T 3gem_A           19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA----G--AVALYGDFSCETGIMAFIDL   92 (260)
T ss_dssp             --------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH----T--CEEEECCTTSHHHHHHHHHH
T ss_pred             cccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc----C--CeEEECCCCCHHHHHHHHHH
Confidence            33456788999999999999999999999999999999999987654333222    2  57789999999999887765


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                          ++++|+||||||...... .+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++..|
T Consensus        93 ~~~~~g~iD~lv~nAg~~~~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g---~iv~isS~~~~~~  163 (260)
T 3gem_A           93 LKTQTSSLRAVVHNASEWLAET-PGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVA---DIVHISDDVTRKG  163 (260)
T ss_dssp             HHHHCSCCSEEEECCCCCCCCC-TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSC---EEEEECCGGGGTC
T ss_pred             HHHhcCCCCEEEECCCccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---EEEEECChhhcCC
Confidence                579999999999876655 557889999999999999999999999999887644   9999999987653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.95  E-value=6.7e-27  Score=177.96  Aligned_cols=141  Identities=30%  Similarity=0.431  Sum_probs=123.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|++++.++..+++... +.++..+.+|++|++++++++++    +
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999998887777766432 56788899999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHH--HHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL--IKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.++++++++++|.  |++++.   ++||++||.++..
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~---g~iv~isS~~~~~  165 (277)
T 2rhc_B           98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT---GRIVNIASTGGKQ  165 (277)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTE---EEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCC---eEEEEECcccccc
Confidence            78999999999887778888999999999999999999999999998  877643   4999999998764

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.95  E-value=1.3e-27  Score=179.89  Aligned_cols=143  Identities=30%  Similarity=0.345  Sum_probs=112.7

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+++..++..+++    +.++.++.+|++|++++++++++   
T Consensus         2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~   77 (257)
T 3tpc_A            2 VMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL----GAAVRFRNADVTNEADATAALAFAKQ   77 (257)
T ss_dssp             --CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988777666554    45678899999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcc----cCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC---CCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELE----VQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN---GGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||.....++.    +.+.++|++.+++|+.|++.+++++.|.|+++..   +..++||++||.++..
T Consensus        78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~  155 (257)
T 3tpc_A           78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD  155 (257)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc
Confidence             58999999999987665433    6789999999999999999999999999987521   1345999999987654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.95  E-value=3.7e-27  Score=180.62  Aligned_cols=145  Identities=21%  Similarity=0.220  Sum_probs=122.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHH------------
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFD------------  100 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------  100 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++ |+++..++..+++....+.++..+.+|+++.+            
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP   85 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccc
Confidence            46899999999999999999999999999999999 99888887777775344667889999999998            


Q ss_pred             -----HHHHHHHh----hCCCcEEEecCCCCCCCCcccCC--------------HHHHHHHHHhhhhHHHHHHHHHcHHH
Q 030328          101 -----AVKTALDE----AGPVDVLVVNQGVFVPGELEVQS--------------LDEVRLMIDVNIIGSFHMIKAALPLI  157 (179)
Q Consensus       101 -----~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~--------------~~~~~~~~~~n~~~~~~l~~~~~~~~  157 (179)
                           ++++++++    ++++|+||||||.....++.+.+              +++|++.+++|+.+++.+++.++|.|
T Consensus        86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m  165 (291)
T 1e7w_A           86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  165 (291)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                 88777654    58999999999988777777788              89999999999999999999999999


Q ss_pred             HhccC---CCCcEEEEecccCccc
Q 030328          158 KKRQN---GGPASIALMSSQAGQV  178 (179)
Q Consensus       158 ~~~~~---~~~~~iv~iss~~g~~  178 (179)
                      ++++.   +..++||++||.++..
T Consensus       166 ~~~~~~~~~~~g~Iv~isS~~~~~  189 (291)
T 1e7w_A          166 AGTPAKHRGTNYSIINMVDAMTNQ  189 (291)
T ss_dssp             HTSCGGGSCSCEEEEEECCTTTTS
T ss_pred             HhcCCCCCCCCcEEEEEechhhcC
Confidence            87541   1135999999998764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.95  E-value=4.8e-27  Score=176.49  Aligned_cols=137  Identities=23%  Similarity=0.380  Sum_probs=121.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|++++.++..+++    +.++..+.+|++|++++++++++    +
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH----CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367999999999999999999999999999999999988777666554    45688899999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++    ++||++||.++..
T Consensus        79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~----g~iv~isS~~~~~  143 (253)
T 1hxh_A           79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG----GSIINMASVSSWL  143 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC----EEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC----CEEEEEcchhhcC
Confidence            8899999999988777788899999999999999999999999999997654    4999999988764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.95  E-value=3.3e-27  Score=177.43  Aligned_cols=145  Identities=26%  Similarity=0.405  Sum_probs=120.9

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .....++|++|||||++|||+++|++|+++|++|++++ |+.+..++..+++.. .+.++..+.+|++|.+++++++++ 
T Consensus         7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~   85 (256)
T 3ezl_A            7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA-LGFDFYASEGNVGDWDSTKQAFDKV   85 (256)
T ss_dssp             ------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCeeEEEecCCCCHHHHHHHHHHH
Confidence            33456899999999999999999999999999999988 555555655555543 356788899999999998877654 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                         ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++..+
T Consensus        86 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~~  156 (256)
T 3ezl_A           86 KAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWG---RIINISSVNGQKG  156 (256)
T ss_dssp             HHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCCCGGGS
T ss_pred             HHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEEcchhhccC
Confidence               5789999999999888888889999999999999999999999999999887654   9999999987653

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.95  E-value=3.4e-27  Score=178.36  Aligned_cols=143  Identities=26%  Similarity=0.462  Sum_probs=125.9

Q ss_pred             cCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHH-HHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           33 IPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKL-EEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      +++++|+++||||+  +|||+++|++|+++|++|++++|+.+.. ++..+++....+.++.++.+|++|++++++++++ 
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence            35789999999999  9999999999999999999999886644 5666666655578899999999999998887655 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                         ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  165 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTG---SLVITASMSGHI  165 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCGGGTS
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCc---eEEEEccccccc
Confidence               5899999999999888888889999999999999999999999999999887654   999999988754

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.95  E-value=1.1e-26  Score=178.50  Aligned_cols=140  Identities=30%  Similarity=0.402  Sum_probs=123.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCc---eEEEEEeeCCCHHHHHHHHHh--
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI---EVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~---~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++... +.   ++..+.+|++|++++++++++  
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  101 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA-GVPAEKINAVVADVTEASGQDDIINTTL  101 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999998888777776543 33   688899999999998877654  


Q ss_pred             --hCCCcEEEecCCCCCCCC--cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGE--LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|+||||||.....+  +.+.+.++|++.+++|+.+++.+++++.|.|++++ +   +||++||.++..
T Consensus       102 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g---~IV~isS~~~~~  171 (297)
T 1xhl_A          102 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-G---EIVNVSSIVAGP  171 (297)
T ss_dssp             HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-C---EEEEECCGGGSS
T ss_pred             HhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-C---EEEEEcCchhcc
Confidence              589999999999877666  88899999999999999999999999999998754 3   999999987754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.95  E-value=9.8e-27  Score=176.41  Aligned_cols=138  Identities=25%  Similarity=0.380  Sum_probs=120.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ...+++|++|||||++|||+++|++|+++|++|++++++ .+..++..+++.. .+.++..+.+|++|.+++++++++  
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~   91 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKA-LGSDAIAIKADIRQVPEIVKLFDQAV   91 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            345789999999999999999999999999999998765 4556666666644 367789999999999998887654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                        ++++|+||||||.....++.+.++++|++.+++|+.|+++++++++|.|++  .   ++||++||.+
T Consensus        92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~---g~iv~isS~~  155 (270)
T 3is3_A           92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE--G---GRIVLTSSNT  155 (270)
T ss_dssp             HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--T---CEEEEECCTT
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--C---CeEEEEeCch
Confidence              589999999999988888999999999999999999999999999999965  2   3999999987

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.95  E-value=1.4e-26  Score=174.59  Aligned_cols=141  Identities=26%  Similarity=0.405  Sum_probs=122.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++... +.++..+.+|++|.+++++++++    +
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE-GLSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999999998887777766532 56788899999999998877654    5


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||... ..++.+.++++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  156 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGG---GSVLIVSSVGAYH  156 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC---EEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---CEEEEEechhhcC
Confidence            79999999999764 356778899999999999999999999999999987653   4999999988754

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.95  E-value=9.5e-27  Score=175.17  Aligned_cols=135  Identities=30%  Similarity=0.422  Sum_probs=117.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|+++. ++..+++.     + ..+.+|++|++++++++++    +
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~-----~-~~~~~D~~~~~~~~~~~~~~~~~~   75 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG-----G-AFFQVDLEDERERVRFVEEAAYAL   75 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT-----C-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh-----C-CEEEeeCCCHHHHHHHHHHHHHHc
Confidence            3678999999999999999999999999999999999876 55544442     3 6789999999998887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        76 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~---g~iv~isS~~~~~  141 (256)
T 2d1y_A           76 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG---GAIVNVASVQGLF  141 (256)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC---EEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC---cEEEEEccccccC
Confidence            79999999999887778888999999999999999999999999999987654   4999999988754

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.95  E-value=1.2e-26  Score=176.23  Aligned_cols=141  Identities=28%  Similarity=0.366  Sum_probs=121.0

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ..+++ |+++||||++|||+++|++|+++|++|++++|++++.++..+++...  .++..+.+|++|.+++++++++   
T Consensus        17 ~~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   93 (272)
T 2nwq_A           17 GSHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK--TRVLPLTLDVRDRAAMSAAVDNLPE   93 (272)
T ss_dssp             ----C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHTCCG
T ss_pred             CCCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            34456 99999999999999999999999999999999998887777666432  4688899999999999998865   


Q ss_pred             -hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCc-EEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPA-SIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~-~iv~iss~~g~~  178 (179)
                       ++++|+||||||.... .++.+.+.++|++++++|+.+++.+++.++|.|++++.   + +||++||.++..
T Consensus        94 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~---g~~IV~isS~~~~~  163 (272)
T 2nwq_A           94 EFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGA---GASIVNLGSVAGKW  163 (272)
T ss_dssp             GGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCT---TCEEEEECCGGGTS
T ss_pred             HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEeCCchhcc
Confidence             4789999999998764 77888999999999999999999999999999987642   4 899999998764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.95  E-value=2.8e-27  Score=181.91  Aligned_cols=142  Identities=26%  Similarity=0.339  Sum_probs=121.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH-HHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF-DAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~v~~~~~~----  108 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|++++.++..+++....+.++.++.+|+++. ++++++++.    
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999999999999988888888765566789999999997 888776653    


Q ss_pred             hCCCcEEEecCCCCCC------------------------------CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHH
Q 030328          109 AGPVDVLVVNQGVFVP------------------------------GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK  158 (179)
Q Consensus       109 ~~~id~li~~ag~~~~------------------------------~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  158 (179)
                      ++++|+||||||....                              .++.+.+.+++++++++|+.|++.+++.++|.|+
T Consensus        89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~  168 (311)
T 3o26_A           89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ  168 (311)
T ss_dssp             HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence            5799999999998642                              1345678899999999999999999999999998


Q ss_pred             hccCCCCcEEEEecccCccc
Q 030328          159 KRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       159 ~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++.+   +||++||.++..
T Consensus       169 ~~~~~---~IV~isS~~~~~  185 (311)
T 3o26_A          169 LSDSP---RIVNVSSSTGSL  185 (311)
T ss_dssp             TSSSC---EEEEECCGGGSG
T ss_pred             cCCCC---eEEEEecCCccc
Confidence            76544   999999998764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.95  E-value=1.6e-26  Score=175.46  Aligned_cols=139  Identities=29%  Similarity=0.459  Sum_probs=120.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ..+++|+++||||++|||+++|++|+++|++|++++++. +..++..+++.. .+.++..+.+|++|++++++++++   
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ-AGGRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999987654 556666666643 367788999999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++++.|.|++  .   ++||++||..+.
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~--~---g~iv~isS~~~~  170 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD--G---GRIITIGSNLAE  170 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--T---CEEEEECCGGGT
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--C---CEEEEEeChhhc
Confidence             589999999999988888999999999999999999999999999999854  2   399999997654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.95  E-value=1.5e-26  Score=176.12  Aligned_cols=140  Identities=34%  Similarity=0.452  Sum_probs=122.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCc---eEEEEEeeCCCHHHHHHHHHh--
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGI---EVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~---~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++... +.   ++..+.+|++|++++++++++  
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS-GVSEKQVNSVVADVTTEDGQDQIINSTL   81 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999998888777766543 33   688899999999998877654  


Q ss_pred             --hCCCcEEEecCCCCCCCC----cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGE----LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|+||||||.....+    +.+.+.++|++.+++|+.+++.+++.+.|.|++++ +   +||++||.++..
T Consensus        82 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g---~iv~isS~~~~~  153 (280)
T 1xkq_A           82 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-G---EIVNVSSIVAGP  153 (280)
T ss_dssp             HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCGGGSS
T ss_pred             HhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-C---cEEEecCccccC
Confidence              579999999999877666    77889999999999999999999999999998765 3   999999987754

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.95  E-value=1.1e-26  Score=173.43  Aligned_cols=143  Identities=25%  Similarity=0.380  Sum_probs=124.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||+||||++++++|+++|++|++++|++++.++..+++....+.++..+.+|++|++++++++++   
T Consensus         2 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (248)
T 2pnf_A            2 EIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYN   81 (248)
T ss_dssp             CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988887777666543466788899999999999887764   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++.
T Consensus        82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~---~~iv~~sS~~~~  148 (248)
T 2pnf_A           82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRW---GRIVNISSVVGF  148 (248)
T ss_dssp             HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTC---EEEEEECCHHHH
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC---cEEEEEccHHhc
Confidence             478999999999887777888899999999999999999999999999987654   399999997654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.95  E-value=1.2e-26  Score=180.28  Aligned_cols=140  Identities=27%  Similarity=0.435  Sum_probs=118.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-----hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-----GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-----~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|+     .+..++..+.+. ..+.++..+.+|++|.+++++++++
T Consensus         2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~-~~~~~~~~~~~Dvtd~~~v~~~~~~   80 (324)
T 3u9l_A            2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFAR-DNDVDLRTLELDVQSQVSVDRAIDQ   80 (324)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHH-HHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHH-hcCCcEEEEEeecCCHHHHHHHHHH
Confidence            3578999999999999999999999999999998876     334444444433 2367789999999999998877664


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                          ++++|+||||||.....++.+.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.++.
T Consensus        81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g---~iV~isS~~~~  150 (324)
T 3u9l_A           81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHG---LLIWISSSSSA  150 (324)
T ss_dssp             HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGT
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEEecchhc
Confidence                5899999999999888889999999999999999999999999999999887654   99999998875

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.95  E-value=4.1e-27  Score=176.15  Aligned_cols=136  Identities=26%  Similarity=0.325  Sum_probs=119.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|++++.++.. ++     .++..+.+|++|+++++++.++++++|
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id   76 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY-----PGIQTRVLDVTKKKQIDQFANEVERLD   76 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS-----TTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc-----cCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            367999999999999999999999999999999999987654332 21     157788999999999998888888999


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||.....++.+.++++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        77 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  138 (246)
T 2ag5_A           77 VLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS---GNIINMSSVASSV  138 (246)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCSBTTT
T ss_pred             EEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEechHhCc
Confidence            9999999887778888999999999999999999999999999987654   3999999987753

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.95  E-value=1.1e-26  Score=173.79  Aligned_cols=133  Identities=32%  Similarity=0.422  Sum_probs=116.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|++++.++..+++    +  +..+.+|++|++++++++++    +
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~D~~~~~~~~~~~~~~~~~~   75 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----G--AHPVVMDVADPASVERGFAEALAHL   75 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----T--CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----C--CEEEEecCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999999999999987766554432    2  67788999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++.+++.+.|.|++++.   ++||++||.+
T Consensus        76 g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~---g~iv~isS~~  138 (245)
T 1uls_A           76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP---GSIVLTASRV  138 (245)
T ss_dssp             SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC---EEEEEECCGG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---CEEEEEccch
Confidence            88999999999887778888999999999999999999999999999987643   4999999986

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.95  E-value=8.3e-27  Score=178.66  Aligned_cols=140  Identities=29%  Similarity=0.397  Sum_probs=118.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|++|||||++|||+++|++|+++|++|++++|+.+...+...+.....+.++..+.+|++|++++++++++    +
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999999876544333333334567889999999999998877654    5


Q ss_pred             CCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.... .++.+.+.++|++.+++|+.|+++++++++|.|++  .   ++||++||.++..
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~---g~iv~isS~~~~~  188 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ--G---DVIINTASIVAYE  188 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT--T---CEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--C---CEEEEEechHhcC
Confidence            899999999998653 56788899999999999999999999999999854  2   3999999987653

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.95  E-value=1.8e-26  Score=173.08  Aligned_cols=134  Identities=29%  Similarity=0.415  Sum_probs=118.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      |+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++..+.+|++|++++++++++    ++++|
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   76 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----GDNLYIAQLDVRNRAAIEEMLASLPAEWCNID   76 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----cCceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            68999999999999999999999999999999988777666555    24678899999999999998875    47899


Q ss_pred             EEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +||||||... ..++.+.+.++|++.+++|+.|++.+++.++|.|++++.+   +||++||.++..
T Consensus        77 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g---~iv~isS~~~~~  139 (248)
T 3asu_A           77 ILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG---HIINIGSTAGSW  139 (248)
T ss_dssp             EEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCGGGTS
T ss_pred             EEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---eEEEEccchhcc
Confidence            9999999864 4677888999999999999999999999999999876544   999999998764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.95  E-value=4.8e-27  Score=182.33  Aligned_cols=146  Identities=28%  Similarity=0.336  Sum_probs=125.3

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC----------hhHHHHHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS----------GEKLEEAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~----------~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      ...+++|++|||||++|||+++|++|+++|++|++++|+          .+..++..+++.. .+.++..+.+|++|.++
T Consensus        22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~  100 (322)
T 3qlj_A           22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA-AGGEAVADGSNVADWDQ  100 (322)
T ss_dssp             CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHH-TTCEEEEECCCTTSHHH
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHh-cCCcEEEEECCCCCHHH
Confidence            345789999999999999999999999999999999997          6667777776654 36678899999999999


Q ss_pred             HHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC---CCCcEEEEeccc
Q 030328          102 VKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN---GGPASIALMSSQ  174 (179)
Q Consensus       102 v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~~~iv~iss~  174 (179)
                      +++++++    ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+.+.   ...++||++||.
T Consensus       101 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~  180 (322)
T 3qlj_A          101 AAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSG  180 (322)
T ss_dssp             HHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCH
Confidence            8877654    589999999999988888899999999999999999999999999999976542   113599999998


Q ss_pred             Cccc
Q 030328          175 AGQV  178 (179)
Q Consensus       175 ~g~~  178 (179)
                      ++..
T Consensus       181 ~~~~  184 (322)
T 3qlj_A          181 AGLQ  184 (322)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            7654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.95  E-value=8e-27  Score=178.36  Aligned_cols=148  Identities=21%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCC----HHHHHHH
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRD----FDAVKTA  105 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~v~~~  105 (179)
                      ...++++|+++||||++|||+++|++|+++|++|++++|++ +..++..+++....+.++.++.+|+++    .++++++
T Consensus        17 ~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~   96 (288)
T 2x9g_A           17 RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEI   96 (288)
T ss_dssp             -----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHH
Confidence            33457899999999999999999999999999999999998 777777777653446678899999999    9998877


Q ss_pred             HHh----hCCCcEEEecCCCCCCCCc-----cc-----CCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC---CCCcEE
Q 030328          106 LDE----AGPVDVLVVNQGVFVPGEL-----EV-----QSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN---GGPASI  168 (179)
Q Consensus       106 ~~~----~~~id~li~~ag~~~~~~~-----~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~~~i  168 (179)
                      +++    ++++|+||||||.....++     .+     .+.++|++.+++|+.+++.+++.++|.|++++.   +..++|
T Consensus        97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~i  176 (288)
T 2x9g_A           97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSI  176 (288)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEE
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEE
Confidence            654    5899999999998776666     56     788999999999999999999999999976541   013599


Q ss_pred             EEecccCccc
Q 030328          169 ALMSSQAGQV  178 (179)
Q Consensus       169 v~iss~~g~~  178 (179)
                      |++||.++..
T Consensus       177 v~isS~~~~~  186 (288)
T 2x9g_A          177 VNLCDAMVDQ  186 (288)
T ss_dssp             EEECCTTTTS
T ss_pred             EEEecccccC
Confidence            9999998754

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.95  E-value=5.3e-27  Score=177.87  Aligned_cols=135  Identities=30%  Similarity=0.403  Sum_probs=115.9

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      +...+.++|++|||||++|||+++|++|+++|++|++++|+++..           ...+..+.+|++|.+++++++++ 
T Consensus         7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~   75 (269)
T 3vtz_A            7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-----------VNVSDHFKIDVTNEEEVKEAVEKT   75 (269)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-----------TTSSEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-----------cCceeEEEecCCCHHHHHHHHHHH
Confidence            344567899999999999999999999999999999999987543           12456788999999998887654 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                         ++++|+||||||.....++.+.+.++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..
T Consensus        76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  145 (269)
T 3vtz_A           76 TKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHG---SIINIASVQSYA  145 (269)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTS
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC---EEEEECchhhcc
Confidence               5899999999999888888899999999999999999999999999999887654   999999998764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.95  E-value=1.1e-26  Score=174.67  Aligned_cols=138  Identities=28%  Similarity=0.418  Sum_probs=119.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||++++++|+++|++|++++|+++  ++..+++.. .+.++..+.+|++|++++++++++    ++
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR-HGVKAVHHPADLSDVAQIEALFALAEREFG   78 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT-TSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHh-cCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999876  334444432 255788899999999998887654    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  143 (255)
T 2q2v_A           79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNW---GRIINIASVHGLV  143 (255)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC---EEEEEECCGGGTS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEEcCchhcc
Confidence            8999999999887777888999999999999999999999999999987653   4999999998764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.95  E-value=3.1e-26  Score=173.76  Aligned_cols=142  Identities=27%  Similarity=0.388  Sum_probs=124.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .++++|+++||||+||||++++++|+++|++|++++|+++..++..+++... +.++.++.+|++|.+++++++++    
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL-GAKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc-CCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999998887777766543 56788999999999998887654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~---~~iv~isS~~~~~  172 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH---GHIVTVASAAGHV  172 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC---EEEEEECCCC-CC
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---CEEEEEechhhcC
Confidence            578999999999887777888889999999999999999999999999987654   4999999988764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.95  E-value=6.9e-27  Score=177.11  Aligned_cols=138  Identities=29%  Similarity=0.341  Sum_probs=117.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++ ++++..++..+++.. .+.++..+.+|++|++++++++++    
T Consensus        24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA-AGGKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999885 555566666666543 366788999999999999887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|+||||||.....++.+.+.++|++.+++|+.|++.+++.++|.|++.     ++||++||.++.
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-----g~iv~isS~~~~  166 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-----GRIINMSTSQVG  166 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-----EEEEEECCTHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CeEEEEeChhhc
Confidence            5899999999999888888999999999999999999999999999999542     399999998664

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.95  E-value=8.4e-27  Score=177.07  Aligned_cols=144  Identities=20%  Similarity=0.228  Sum_probs=117.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCH----HHHHHHHHh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDF----DAVKTALDE  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~----~~v~~~~~~  108 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++| +++..++..+++....+.++..+.+|++|.    +++++++++
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence            367899999999999999999999999999999999 888888777777544356788899999999    888777654


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCH-----------HHHHHHHHhhhhHHHHHHHHHcHHHHhccC---CCCcEEEE
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSL-----------DEVRLMIDVNIIGSFHMIKAALPLIKKRQN---GGPASIAL  170 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~-----------~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~~~iv~  170 (179)
                          ++++|+||||||.....++.+.++           ++|++.+++|+.+++.++++++|.|+ ++.   +..++||+
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~~~~g~iv~  166 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAWRSRNLSVVN  166 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCCEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCCCCcEEEE
Confidence                579999999999887777777788           99999999999999999999999987 322   11259999


Q ss_pred             ecccCccc
Q 030328          171 MSSQAGQV  178 (179)
Q Consensus       171 iss~~g~~  178 (179)
                      +||.++..
T Consensus       167 isS~~~~~  174 (276)
T 1mxh_A          167 LCDAMTDL  174 (276)
T ss_dssp             ECCGGGGS
T ss_pred             ECchhhcC
Confidence            99998764

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.95  E-value=2.4e-26  Score=173.46  Aligned_cols=140  Identities=26%  Similarity=0.276  Sum_probs=120.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||++|||++++++|+++|++|++++|++++.++..+++.    .++..+.+|++|.+++++++++    
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~d~~~v~~~~~~~~~~   83 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE----NGGFAVEVDVTKRASVDAAMQKAIDA   83 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT----TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999887766554432    2567789999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||.....++.+.++++|+..+++|+.+++.+++++.|.|++++.  .++||++||.++..
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~  151 (263)
T 3ak4_A           84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNT--KGVIVNTASLAAKV  151 (263)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--CCEEEEECCGGGTS
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccc
Confidence            578999999999887778888999999999999999999999999999987651  23999999987754

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.95  E-value=4.1e-26  Score=171.05  Aligned_cols=141  Identities=28%  Similarity=0.389  Sum_probs=122.6

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceE-EEEEeeCCCHHHHHHHHHh-
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV-ATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~v~~~~~~-  108 (179)
                      +.+++++|+++||||+||||++++++|+++|++|++++|++++.++..+++    +.++ ..+.+|++|.+++++++++ 
T Consensus         5 ~~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~   80 (254)
T 2wsb_A            5 TVFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL----GAAVAARIVADVTDAEAMTAAAAEA   80 (254)
T ss_dssp             TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----GGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----cccceeEEEEecCCHHHHHHHHHHH
Confidence            345578999999999999999999999999999999999988777666555    3455 7889999999999887765 


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        81 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~---~~iv~isS~~~~~  149 (254)
T 2wsb_A           81 EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGA---GAIVNLGSMSGTI  149 (254)
T ss_dssp             HHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             HhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC---cEEEEEecchhcc
Confidence              478999999999887777888899999999999999999999999999987754   4999999987654

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.95  E-value=2e-26  Score=173.90  Aligned_cols=139  Identities=26%  Similarity=0.362  Sum_probs=116.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.+.+|+++||||++|||+++|++|+++|++|++++|+.++..+..++.....+.++.++.+|++|.+++++++++    
T Consensus         3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999988766544444444334466789999999999998887764    


Q ss_pred             hCCCcEEEecCC--CCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          109 AGPVDVLVVNQG--VFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       109 ~~~id~li~~ag--~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ++++|++|||||  .....++.+.++++|++.+++|+.+++.+++.++|.|++++.+   +||++||.
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g---~iv~iss~  147 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFG---RIINYGFQ  147 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCT
T ss_pred             hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC---eEEEEeec
Confidence            479999999999  5555678889999999999999999999999999999887654   99999987

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.95  E-value=3.1e-26  Score=172.98  Aligned_cols=144  Identities=28%  Similarity=0.396  Sum_probs=116.6

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ..+.+++|+++||||+||||++++++|+++|++|++++|++++.++..+++... +.++..+.+|+++.+++++++++  
T Consensus         8 ~~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   86 (266)
T 1xq1_A            8 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK-GFQVTGSVCDASLRPEREKLMQTVS   86 (266)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeeEEEECCCCCHHHHHHHHHHHH
Confidence            345578999999999999999999999999999999999988887777666543 55788899999999999888765  


Q ss_pred             --h-CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --A-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~-~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        + +++|+||||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|++.+.+   +||++||.++..
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~---~iv~isS~~~~~  156 (266)
T 1xq1_A           87 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG---NIIFMSSIAGVV  156 (266)
T ss_dssp             HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---EEEEEC------
T ss_pred             HHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc---EEEEEccchhcc
Confidence              3 789999999998877778888999999999999999999999999999876544   999999987653

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.95  E-value=5.1e-27  Score=177.34  Aligned_cols=140  Identities=21%  Similarity=0.275  Sum_probs=119.9

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh---hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG---EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~---~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.   +..++..+++.. .+.++..+.+|++|++++++++++
T Consensus         6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~   84 (262)
T 3ksu_A            6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELED-QGAKVALYQSDLSNEEEVAKLFDF   84 (262)
T ss_dssp             CSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHT-TTCEEEEEECCCCSHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHH
Confidence            3467899999999999999999999999999999987754   345555555543 367889999999999999887764


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                          ++++|+||||||.....++.+.+.++|++.+++|+.+++.++++++|.|++  .   ++||++||.++.
T Consensus        85 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~---g~iv~isS~~~~  152 (262)
T 3ksu_A           85 AEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNP--N---GHIITIATSLLA  152 (262)
T ss_dssp             HHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE--E---EEEEEECCCHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcC--C---CEEEEEechhhc
Confidence                589999999999988888889999999999999999999999999999832  2   399999998654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.95  E-value=2.1e-26  Score=175.06  Aligned_cols=138  Identities=32%  Similarity=0.455  Sum_probs=113.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHh--hcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL--ATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||++|||++++++|+++|++|++++|++++.++..+++..  ..+.++..+.+|++|++++++++++    
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999888877766631  1245688899999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccC----CHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQ----SLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++++|+||||||.....++.+.    +.++|++.+++|+.+++.+++.+.|.|++++ +   +||++||.++
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g---~iv~isS~~~  151 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-G---EIVNISSIAS  151 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCTTS
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C---eEEEEecccc
Confidence            5799999999998776677777    9999999999999999999999999998754 3   9999999887

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.95  E-value=1e-26  Score=177.01  Aligned_cols=138  Identities=30%  Similarity=0.420  Sum_probs=121.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +.+|+++||||+||||+++|++|+++|++|++++|+.+..++..++.    +.++..+.+|++|.+++++++++    ++
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY----PDRAEAISLDVTDGERIDVVAADVLARYG   78 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC----TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----cCCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999999988776655433    45688899999999998877654    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|++|||||.....++.+.+.++|++.+++|+.|++.+++.++|.|++++.+   +||++||.++..+
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~---~iv~~sS~~~~~~  144 (281)
T 3m1a_A           79 RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSG---SVVNISSFGGQLS  144 (281)
T ss_dssp             CCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTCC
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEEEcCccccCC
Confidence            89999999998877788889999999999999999999999999999887644   9999999887643

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.95  E-value=1.5e-26  Score=174.27  Aligned_cols=144  Identities=22%  Similarity=0.255  Sum_probs=122.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHH---cCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAK---EGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~---~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ++++|+++||||++|||+++|++|++   +|++|++++|+++..++..+++.... +.++..+.+|++|++++++++++.
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999   89999999999988888777775432 567889999999999998887653


Q ss_pred             ------CCCc--EEEecCCCCCC--CCccc-CCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 ------GPVD--VLVVNQGVFVP--GELEV-QSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ------~~id--~li~~ag~~~~--~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                            +++|  +||||||....  .++.+ .+.++|++.+++|+.|++.+++.++|.|+++. +..++||++||.++..
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~g~iv~isS~~~~~  161 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSP-GLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCT-TCEEEEEEECCGGGTS
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCceEEEEcCchhcC
Confidence                  5788  99999998653  45666 68999999999999999999999999997651 1235999999998764

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.2e-26  Score=172.18  Aligned_cols=134  Identities=25%  Similarity=0.396  Sum_probs=117.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +|+++||||++|||+++|++|+++|  ++|++++|+++..++..+++    +.++..+.+|++|.+++++++++    ++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY----GDRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH----GGGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            7899999999999999999999985  78999999988877766554    45788899999999998887654    58


Q ss_pred             CCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|+||||||...+ .++.+.+.++|++.+++|+.|++.+++.++|.|++++ +   +||++||.++..
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g---~iv~isS~~~~~  142 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-G---NVVFVSSDACNM  142 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCSCCCC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-C---eEEEEcCchhcc
Confidence            99999999998654 7788899999999999999999999999999998764 3   999999998764

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.3e-26  Score=173.36  Aligned_cols=140  Identities=24%  Similarity=0.261  Sum_probs=120.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-----~  109 (179)
                      +++|+++||||++|||+++|++|+++|++|++++|++++.++..+++... +.++..+.+|++|++++++++++     +
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL-GGQCVPVVCDSSQESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-SSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-CCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999998888777776543 56788899999999999887754     5


Q ss_pred             CCCcEEEecCC--CC-----CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQG--VF-----VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag--~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||  ..     ...++.+.+.++|++++++|+.+++.+++.+.|.|.+++.+   +||++||.++..
T Consensus        82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  154 (260)
T 2qq5_A           82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQG---LIVVISSPGSLQ  154 (260)
T ss_dssp             TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCC---EEEEECCGGGTS
T ss_pred             CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCc---EEEEEcChhhcC
Confidence            88999999995  32     24567778889999999999999999999999999876544   999999987753

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.95  E-value=2e-26  Score=179.36  Aligned_cols=144  Identities=21%  Similarity=0.223  Sum_probs=121.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHH-------------
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFD-------------  100 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------------  100 (179)
                      +++|++|||||++|||+++|++|+++|++|++++ |+++..++..+++....+.++.++.+|+++.+             
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~  123 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV  123 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccccc
Confidence            7899999999999999999999999999999999 99888888777775344667889999999988             


Q ss_pred             ----HHHHHHHh----hCCCcEEEecCCCCCCCCcccCC--------------HHHHHHHHHhhhhHHHHHHHHHcHHHH
Q 030328          101 ----AVKTALDE----AGPVDVLVVNQGVFVPGELEVQS--------------LDEVRLMIDVNIIGSFHMIKAALPLIK  158 (179)
Q Consensus       101 ----~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~--------------~~~~~~~~~~n~~~~~~l~~~~~~~~~  158 (179)
                          ++++++++    ++++|+||||||.....++.+.+              .++|+..+++|+.+++.+++.++|.|.
T Consensus       124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~  203 (328)
T 2qhx_A          124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  203 (328)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                88777654    58999999999988777777777              899999999999999999999999998


Q ss_pred             hcc---CCCCcEEEEecccCccc
Q 030328          159 KRQ---NGGPASIALMSSQAGQV  178 (179)
Q Consensus       159 ~~~---~~~~~~iv~iss~~g~~  178 (179)
                      +++   .+..++||++||.++..
T Consensus       204 ~~~~~~~~~~g~IV~isS~~~~~  226 (328)
T 2qhx_A          204 GTPAKHRGTNYSIINMVDAMTNQ  226 (328)
T ss_dssp             HSCGGGSCSCEEEEEECCTTTTS
T ss_pred             hcCCcCCCCCcEEEEECchhhcc
Confidence            754   11135999999998764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.95  E-value=1.8e-26  Score=174.37  Aligned_cols=134  Identities=28%  Similarity=0.358  Sum_probs=114.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +++|+++||||++|||++++++|+++|++|++++|++++.++..+++    +.++..+.+|++|.+++++++++    ++
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL----EAEAIAVVADVSDPKAVEAVFAEALEEFG   79 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC----CSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----cCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999988776655544    25678899999999998877654    58


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.| ++ .   ++||++||.++.
T Consensus        80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~-~---g~iv~isS~~~~  141 (263)
T 2a4k_A           80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE-G---GSLVLTGSVAGL  141 (263)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT-T---CEEEEECCCTTC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-C---CEEEEEecchhc
Confidence            99999999998877788889999999999999999999999999999 43 3   399999998875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.95  E-value=8.2e-26  Score=169.92  Aligned_cols=142  Identities=25%  Similarity=0.409  Sum_probs=123.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||+||||++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|++++++++++    
T Consensus         9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (260)
T 3awd_A            9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-EGHDVSSVVMDVTNTESVQNAVRSVHEQ   87 (260)
T ss_dssp             GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999998877777666643 256788999999999998887764    


Q ss_pred             hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||... ..++.+.+.++|++.+++|+.+++.+++.+.|.|++++.   ++|+++||.++..
T Consensus        88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~iv~~sS~~~~~  155 (260)
T 3awd_A           88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQ---GVIVAIGSMSGLI  155 (260)
T ss_dssp             HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC---CEEEEEecchhcc
Confidence            578999999999876 567778899999999999999999999999999987654   3999999987754

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.95  E-value=1.5e-26  Score=175.21  Aligned_cols=140  Identities=21%  Similarity=0.374  Sum_probs=119.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +.+|+++||||++|||+++|++|+++|++|++++ ++.+..++..+++. ..+.++.++.+|++|.+++++++++    +
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER-DAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHH-TTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHH-hcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999999998 55555555544443 3466788999999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  167 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFG---RIVNIGSVNGSR  167 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHH
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEeCChhhcc
Confidence            799999999999888888889999999999999999999999999999887654   999999987653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.95  E-value=3.1e-26  Score=175.69  Aligned_cols=139  Identities=29%  Similarity=0.408  Sum_probs=117.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh--hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG--EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|++|||||++|||+++|++|+++|++|++++|+.  +..++..+++. ..+.++..+.+|++|.+++++++++   
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIE-ECGRKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHH-HTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHH-HcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999873  33444444443 3467888999999999998877654   


Q ss_pred             -hCCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||... ..++.+.++++|++.+++|+.|+++++++++|.|++.     ++||++||.++..
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-----g~Iv~isS~~~~~  191 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-----ASIITTSSIQAYQ  191 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-----CEEEEECCGGGTS
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-----CEEEEECChhhcc
Confidence             589999999999865 4678889999999999999999999999999998542     3999999998764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=1.3e-26  Score=174.79  Aligned_cols=139  Identities=27%  Similarity=0.340  Sum_probs=119.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      ..+++|+++||||++|||+++|++|+++|++|+++ +++.+..++..+++.. .+.++..+.+|++|.+++++++++   
T Consensus         4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK-LGRSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT-TTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999998 5566666666666643 356788899999999998887754   


Q ss_pred             -hCCCcEEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 -AGPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 -~~~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                       ++++|++|||||.. ...++.+.++++|++.+++|+.|+++++++++|.|++  .   ++||++||.++.
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~---g~iv~isS~~~~  148 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK--G---GAIVTFSSQAGR  148 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E---EEEEEECCHHHH
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C---CEEEEEcCHHhc
Confidence             58999999999977 5677888999999999999999999999999999865  2   399999998764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.95  E-value=3e-26  Score=172.65  Aligned_cols=145  Identities=29%  Similarity=0.503  Sum_probs=124.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++....+.++..+.+|++|.+++++++++   
T Consensus         9 ~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   88 (265)
T 1h5q_A            9 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA   88 (265)
T ss_dssp             EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999776655555555544466788999999999998887765   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.  .++||++||.++..
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~  157 (265)
T 1h5q_A           89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ--KGSIVVTSSMSSQI  157 (265)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGTS
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCC--CceEEEeCCchhhc
Confidence             578999999999888778888899999999999999999999999999987642  24999999987653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.94  E-value=4.2e-26  Score=170.14  Aligned_cols=140  Identities=26%  Similarity=0.379  Sum_probs=120.7

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .+++++|+++||||+||||++++++|+++|++|++++|++++.++..+++.   +  ...+.+|++|.++++++++++++
T Consensus         2 ~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~--~~~~~~D~~~~~~~~~~~~~~~~   76 (244)
T 3d3w_A            2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP---G--IEPVCVDLGDWEATERALGSVGP   76 (244)
T ss_dssp             CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST---T--CEEEECCTTCHHHHHHHHTTCCC
T ss_pred             ccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC---C--CCEEEEeCCCHHHHHHHHHHcCC
Confidence            345789999999999999999999999999999999999877665544331   2  34568999999999999988888


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.  .++||++||.++..
T Consensus        77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~  141 (244)
T 3d3w_A           77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV--PGAIVNVSSQCSQR  141 (244)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGTS
T ss_pred             CCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--CcEEEEeCchhhcc
Confidence            999999999887777888899999999999999999999999999987641  24999999987754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.94  E-value=5.5e-26  Score=173.30  Aligned_cols=140  Identities=23%  Similarity=0.397  Sum_probs=119.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      +.+++|+++||||++|||+++|++|+++|++|++++|+.++ .++..+++.. .+.++..+.+|+++.+++++++++   
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~  103 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK-NGSDAACVKANVGVVEDIVRMFEEAVK  103 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHH-hCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999998754 4444444533 356788899999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|+||||||.....++.+.++++|++.+++|+.|++++++++.|.|.  +.   ++||++||.++..
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~---g~iv~isS~~~~~  169 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE--IG---GRLILMGSITGQA  169 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC--TT---CEEEEECCGGGTC
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC---CeEEEEechhhcc
Confidence             58999999999988777888899999999999999999999999999982  22   3999999988754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.94  E-value=4.5e-26  Score=173.75  Aligned_cols=138  Identities=33%  Similarity=0.486  Sum_probs=116.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++    +.++..+.+|+++.+++++++++    +
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH----GGNAVGVVGDVRSLQDQKRAAERCLAAF   77 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----BTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc----CCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999988777655443    56788899999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCC-Cc----ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPG-EL----EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~-~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|+||||||..... ++    .+.+.++|++++++|+.+++.++++++|.|.+++ +   +||++||.++..+
T Consensus        78 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g---~iv~isS~~~~~~  148 (281)
T 3zv4_A           78 GKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-G---SVVFTISNAGFYP  148 (281)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCGGGTSS
T ss_pred             CCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-C---eEEEEecchhccC
Confidence            8999999999986532 22    2445678999999999999999999999998764 3   9999999987653

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.94  E-value=7.5e-26  Score=169.24  Aligned_cols=140  Identities=34%  Similarity=0.405  Sum_probs=120.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      ++|+++||||+||||++++++|+++|++|++++|++++.++..+++....+.++..+.+|++|++++++++++    +++
T Consensus         1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            3689999999999999999999999999999999988877776665222345688899999999998887764    578


Q ss_pred             CcEEEecCCCCCCCC---cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGE---LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.....+   +.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~---~~iv~isS~~~~~  147 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGA---GVIVNIASVASLV  147 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC---CEEEEECChhhcc
Confidence            999999999876655   778899999999999999999999999999987654   4999999987754

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.94  E-value=6.7e-26  Score=173.02  Aligned_cols=141  Identities=21%  Similarity=0.280  Sum_probs=123.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ..+++|+++||||+||||++++++|+++|++|++++|++++.++..+++.. .+.++..+.+|++|.+++++++++    
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-FGYESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh-cCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999999999998887777766643 256788899999999999887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+.+.   ++||++||.++.
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~---~~iv~isS~~~~  184 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY---GRIINISSIVGL  184 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC---EEEEEECCTHHH
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC---CEEEEECChhhc
Confidence            478999999999887778888999999999999999999999999999987654   499999998764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.94  E-value=6.3e-26  Score=169.06  Aligned_cols=139  Identities=24%  Similarity=0.351  Sum_probs=120.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .++++|+++||||+|+||++++++|+++|++|++++|++++.++..++.   .  .+..+.+|++|.+++++++++++++
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~i   77 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---P--GIEPVCVDLGDWDATEKALGGIGPV   77 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T--TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c--CCCcEEecCCCHHHHHHHHHHcCCC
Confidence            4578999999999999999999999999999999999987766554432   1  2455689999999999999988889


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.  .++||++||.++..
T Consensus        78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~  141 (244)
T 1cyd_A           78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV--PGSIVNVSSMVAHV  141 (244)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGTS
T ss_pred             CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC--CeEEEEEcchhhcC
Confidence            99999999887777888899999999999999999999999999987641  24999999987654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.94  E-value=1.4e-25  Score=168.81  Aligned_cols=142  Identities=25%  Similarity=0.336  Sum_probs=122.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++|+++||||+||||++++++|+++|++|++++| +++..++..+++.. .+.++.++.+|++|.+++++++++    
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK-VGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999 77777766666643 356788899999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.  .++||++||.++..
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~~iv~isS~~~~~  150 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI--KGTVINMSSVHEKI  150 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--CCEEEEECCGGGTS
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC--CCEEEEeCCHHhcC
Confidence            578999999999887777888899999999999999999999999999987641  23999999987654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.94  E-value=6.1e-26  Score=172.11  Aligned_cols=142  Identities=27%  Similarity=0.376  Sum_probs=122.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      .+|+++||||++|||+++|++|+++|++|+++ .|+.+..++..+++.. .+.++..+.+|++|.+++++++++    ++
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE-SGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999876 6777777777666643 367889999999999999887765    57


Q ss_pred             CCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|+||||||.... .++.+.+.++|++.+++|+.|++.+++.++|.|.+...+..++||++||.++..
T Consensus       104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~  172 (272)
T 4e3z_A          104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAIL  172 (272)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHH
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhcc
Confidence            99999999998765 678889999999999999999999999999999876444456999999987653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.94  E-value=5.3e-26  Score=173.42  Aligned_cols=137  Identities=34%  Similarity=0.467  Sum_probs=116.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC------------hhHHHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS------------GEKLEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~------------~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      ..+++|++|||||++|||+++|++|+++|++|++++|+            .+..++..+++.. .+.++..+.+|++|.+
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK-TGRKAYTAEVDVRDRA   84 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH-TTSCEEEEECCTTCHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHh-cCCceEEEEccCCCHH
Confidence            35789999999999999999999999999999999987            5666666555543 3678899999999999


Q ss_pred             HHHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          101 AVKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       101 ~v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++++++++    ++++|+||||||..... . +.+.++|++.+++|+.|++.+++.++|.|.  +.   ++||++||.++
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~-~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~---g~iv~isS~~~  157 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLG-A-HLPVQAFADAFDVDFVGVINTVHAALPYLT--SG---ASIITTGSVAG  157 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCC-T-TCCTHHHHHHHHHHTHHHHHHHHHHGGGCC--TT---CEEEEECCHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCccc-C-cCCHHHHHHHhhhhhhhhHHHHHHHHHHhh--cC---cEEEEeccchh
Confidence            98877654    58999999999987655 3 378899999999999999999999999982  22   39999999876


Q ss_pred             c
Q 030328          177 Q  177 (179)
Q Consensus       177 ~  177 (179)
                      .
T Consensus       158 ~  158 (287)
T 3pxx_A          158 L  158 (287)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=7.3e-26  Score=171.68  Aligned_cols=136  Identities=29%  Similarity=0.458  Sum_probs=117.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|+++..++..+++.     .+..+.+|++|++++++++++    +
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP-----GAVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CCeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999999887766555442     367889999999998877654    5


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||... ..++.+.++++|++.+++|+.+++.+++++.|.|+++.    ++||++||.++..
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~----g~iv~isS~~~~~  146 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ----GNVINISSLVGAI  146 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT----CEEEEECCHHHHH
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC----CEEEEEcCccccC
Confidence            89999999999865 35778889999999999999999999999999997653    3999999986643

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.94  E-value=1.6e-25  Score=171.97  Aligned_cols=143  Identities=23%  Similarity=0.308  Sum_probs=124.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ..+++|+++||||+||||++++++|+++|++|++++|++++.++..+++....+.++.++.+|++|.+++++++++    
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998888777777654466789999999999998887655    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.  .++||++||.++.
T Consensus       102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~~iv~isS~~~~  168 (302)
T 1w6u_A          102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK--GAAFLSITTIYAE  168 (302)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CEEEEEECCTHHH
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CCEEEEEcccccc
Confidence            478999999999877777888899999999999999999999999999974432  3599999998664

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.94  E-value=9.9e-26  Score=168.67  Aligned_cols=141  Identities=33%  Similarity=0.439  Sum_probs=121.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+||||++++++|+++|++|++++|+++..++..+++..  ..++..+.+|++|++++++++++    +
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc--cCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            36799999999999999999999999999999999998877766665532  14688899999999998887765    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.+++.+++.++|.|++++.  .++||++||.++..
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~  147 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL--GASIINMSSIEGFV  147 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS--CEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC--CCEEEEeCCchhcc
Confidence            78999999999887777888899999999999999999999999999977543  14999999987754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.94  E-value=8.7e-26  Score=170.64  Aligned_cols=143  Identities=15%  Similarity=0.206  Sum_probs=119.2

Q ss_pred             CcCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           32 RIPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .+++++|+++||||+  +|||+++|++|+++|++|++++|+++..+...+......+.++..+.+|++|.+++++++++ 
T Consensus         2 ~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            2 NFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             CSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred             ccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999  66999999999999999999999876555444433332233788999999999998887765 


Q ss_pred             ---hCCCcEEEecCCCCC----CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 ---AGPVDVLVVNQGVFV----PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ---~~~id~li~~ag~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                         ++++|++|||||...    ..++.+.+.++|+..+++|+.+++.+++.++|.|++  .   ++||++||.++..|
T Consensus        82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~---g~iv~isS~~~~~~  154 (266)
T 3oig_A           82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE--G---GSIVTLTYLGGELV  154 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--C---EEEEEEECGGGTSC
T ss_pred             HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC--C---ceEEEEeccccccc
Confidence               579999999999876    456778899999999999999999999999999864  2   39999999987653

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.94  E-value=1.4e-26  Score=174.11  Aligned_cols=133  Identities=34%  Similarity=0.516  Sum_probs=110.7

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ...++++|+++||||++|||+++|++|+++|++|++++|++++.+            ++..+.+|++|++++++++++  
T Consensus        15 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~Dl~d~~~v~~~~~~~~   82 (253)
T 2nm0_A           15 VPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE------------GFLAVKCDITDTEQVEQAYKEIE   82 (253)
T ss_dssp             -----CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT------------TSEEEECCTTSHHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc------------cceEEEecCCCHHHHHHHHHHHH
Confidence            344578999999999999999999999999999999999865432            156789999999998877654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|+||||||.....++.+.++++|++.+++|+.+++.+++++.|.|++++.   ++||++||.++..
T Consensus        83 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~---g~iv~isS~~~~~  151 (253)
T 2nm0_A           83 ETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKK---GRVVLISSVVGLL  151 (253)
T ss_dssp             HHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---EEEEEECCCCCCC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEEECchhhCC
Confidence              588999999999887777888899999999999999999999999999987654   3999999998764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.94  E-value=7.1e-26  Score=170.63  Aligned_cols=143  Identities=26%  Similarity=0.278  Sum_probs=119.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc------CceEEEEEeeCCCHHHHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT------GIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      .++++|+++||||+||||++++++|+++|++|++++|+++..++..+++....      ..++..+.+|++|.+++++++
T Consensus         3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   82 (264)
T 2pd6_A            3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL   82 (264)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence            34689999999999999999999999999999999999887776655543211      146788999999999988876


Q ss_pred             Hh----hCCC-cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          107 DE----AGPV-DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       107 ~~----~~~i-d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +.    ++++ |++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.  .++||++||.++.
T Consensus        83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~g~iv~isS~~~~  156 (264)
T 2pd6_A           83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGC--RGSIINISSIVGK  156 (264)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCTHHH
T ss_pred             HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC--CceEEEECChhhc
Confidence            54    4778 99999999887777888899999999999999999999999999987641  2499999998654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.94  E-value=6.1e-26  Score=171.57  Aligned_cols=130  Identities=33%  Similarity=0.488  Sum_probs=115.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++|+++.            +.++..+.+|++|.+++++++++    +
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   72 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------------EAKYDHIECDVTNPDQVKASIDHIFKEY   72 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------------SCSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3689999999999999999999999999999999998653            34567889999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.+.++|++.+++|+.+++.++++++|.|++++.+   +||++||.++..
T Consensus        73 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~~  138 (264)
T 2dtx_A           73 GSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDP---SIVNISSVQASI  138 (264)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSC---EEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc---EEEEECCchhcc
Confidence            789999999998877788889999999999999999999999999999876543   999999988764

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.94  E-value=2.3e-25  Score=166.09  Aligned_cols=139  Identities=25%  Similarity=0.393  Sum_probs=121.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-------RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ++|+++||||+||||++++++|+++|+       +|++++|+++..++..+++.. .+.++.++.+|+++++++++++++
T Consensus         1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-EGALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc-cCCeeeEEEecCCCHHHHHHHHHH
Confidence            368999999999999999999999999       999999998887777666643 356788999999999998887764


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                          ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~isS~~~~~  150 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS---GHIFFITSVAATK  150 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC---CEEEEEecchhcC
Confidence                578999999999887778888999999999999999999999999999987654   4999999987754

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.94  E-value=2.3e-26  Score=173.59  Aligned_cols=131  Identities=25%  Similarity=0.359  Sum_probs=115.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|++|||||++|||+++|++|+++|++|++++|+.+..+          ..++..+.+|++|++++++++++    +
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   94 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA----------DPDIHTVAGDISKPETADRIVREGIERF   94 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS----------STTEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc----------cCceEEEEccCCCHHHHHHHHHHHHHHC
Confidence            468999999999999999999999999999999999865321          23578899999999998877654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||.....++.+.++++|++.+++|+.|+++++++++|.|++++.+   +||++||.++.
T Consensus        95 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~iv~isS~~~~  159 (260)
T 3un1_A           95 GRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSG---HIVSITTSLVD  159 (260)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE---EEEEECCTTTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc---EEEEEechhhc
Confidence            899999999999888888899999999999999999999999999999887644   99999997654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=2.5e-25  Score=170.94  Aligned_cols=141  Identities=24%  Similarity=0.330  Sum_probs=122.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh----cCceEEEEEeeCCCHHHHHHHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA----TGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      ...+++|+++||||+||||+++|++|+++|++|++++|+.+..++..+++...    .+.++..+.+|+++.++++++++
T Consensus        13 ~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           13 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            34578999999999999999999999999999999999998888777776541    35678899999999999888776


Q ss_pred             h----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          108 E----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       108 ~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +    ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++++.|.+.+++.   ++||++||.+
T Consensus        93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~---~~iv~isS~~  161 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG---GSIVNIIVPT  161 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC---EEEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC---CeEEEEEeec
Confidence            5    578999999999877777888899999999999999999999999997655443   3999999976

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.94  E-value=3.9e-25  Score=168.80  Aligned_cols=140  Identities=29%  Similarity=0.392  Sum_probs=119.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||+||||++++++|+++|++|++++|++++.++..+++....+.++.++.+|++|.+++++++++    +
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            478999999999999999999999999999999999998888777776554445788999999999998877654    5


Q ss_pred             CCCcEEEec-CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVN-QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~-ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++||| +|... .++.+.+.+++++.+++|+.|++.++++++|.|++..    ++||++||.++..
T Consensus       105 g~iD~li~naag~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~----g~iv~isS~~~~~  169 (286)
T 1xu9_A          105 GGLDMLILNHITNTS-LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN----GSIVVVSSLAGKV  169 (286)
T ss_dssp             TSCSEEEECCCCCCC-CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT----CEEEEEEEGGGTS
T ss_pred             CCCCEEEECCccCCC-CccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCC----CEEEEECCccccc
Confidence            789999999 56544 3445568999999999999999999999999987653    3999999998764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.94  E-value=2.6e-25  Score=166.61  Aligned_cols=142  Identities=23%  Similarity=0.330  Sum_probs=122.3

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||+||||++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|++++++++++   
T Consensus         6 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   84 (255)
T 1fmc_A            6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ-LGGQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH-hCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999887777666653 255788899999999998887754   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||.....++ +.+.++|++.+++|+.+++.+++.+.|.|++.+.   ++||++||.++..
T Consensus        85 ~~~~~d~vi~~Ag~~~~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~---~~iv~~sS~~~~~  151 (255)
T 1fmc_A           85 KLGKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG---GVILTITSMAAEN  151 (255)
T ss_dssp             HHSSCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTC
T ss_pred             hcCCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---cEEEEEcchhhcC
Confidence             5789999999998776665 6789999999999999999999999999987654   4999999987653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.94  E-value=1.8e-25  Score=165.82  Aligned_cols=135  Identities=32%  Similarity=0.448  Sum_probs=117.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .+|+++||||+||||++++++|+++|++|++++|++++.++..+++.     ++..+.+|++|.+++++++++    +++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE-----GALPLPGDVREEGDWARAVAAMEEAFGE   78 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----hceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999999887766554432     467789999999998887654    478


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        79 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~---~~iv~isS~~~~~  142 (234)
T 2ehd_A           79 LSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGG---GTIVNVGSLAGKN  142 (234)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC---EEEEEECCTTTTS
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC---cEEEEECCchhcC
Confidence            999999999887778888999999999999999999999999999987643   4999999987754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.94  E-value=1.7e-25  Score=171.80  Aligned_cols=139  Identities=18%  Similarity=0.199  Sum_probs=117.2

Q ss_pred             cCcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           33 IPIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      +.+++|+++||||+|  |||+++|++|+++|++|++++|+++..+...+.... .+ .+..+.+|++|.+++++++++  
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~Dv~d~~~v~~~~~~~~  103 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAES-LG-VKLTVPCDVSDAESVDNMFKVLA  103 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-HT-CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh-cC-CeEEEEcCCCCHHHHHHHHHHHH
Confidence            357899999999997  999999999999999999999997655444433332 22 357889999999999887765  


Q ss_pred             --hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|+||||||....    .++.+.+.++|++.+++|+.+++.+++.++|.|++  .   ++||++||.++..
T Consensus       104 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~---g~IV~isS~~~~~  174 (296)
T 3k31_A          104 EEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN--G---GSILTLSYYGAEK  174 (296)
T ss_dssp             HHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--C---EEEEEEECGGGTS
T ss_pred             HHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C---CEEEEEEehhhcc
Confidence              5899999999998764    67788999999999999999999999999999865  2   3999999988764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=6.5e-25  Score=166.96  Aligned_cols=143  Identities=24%  Similarity=0.329  Sum_probs=123.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||++|||++++++|+++|++|++++|++++.++..+++.... ..++..+.+|++|++++++++++    
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999988877777665432 25678899999999998887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++. ..++||++||.++.
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~-~~g~iv~isS~~~~  176 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNV-DDGHIININSMSGH  176 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CSCEEEEECCGGGT
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CCceEEEEcChhhc
Confidence            578999999999887777888899999999999999999999999999987652 12499999998775

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.94  E-value=7.7e-26  Score=168.90  Aligned_cols=141  Identities=23%  Similarity=0.378  Sum_probs=104.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++|+++||||+||||++++++|+++|++|+++ +|+++..++..+++.. .+.++..+.+|++|++++++++++    
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA-AGINVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHH-TTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            3678999999999999999999999999999998 5666666666665543 356788899999999998887654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|++++.   ++||++||.++..
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~---~~iv~~sS~~~~~  147 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKS---GKIINITSIAGII  147 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTC---EEEEEECC-----
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC---cEEEEEcChhhcc
Confidence            578999999999877777777888999999999999999999999999987654   3999999987654

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.94  E-value=2.3e-26  Score=173.11  Aligned_cols=141  Identities=32%  Similarity=0.423  Sum_probs=109.9

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.++..   ++    .+.++..+.+|++|.++++++++.   
T Consensus         4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~   76 (257)
T 3tl3_A            4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---AD----LGDRARFAAADVTDEAAVASALDLAET   76 (257)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HH----TCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---Hh----cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999755322   22    256788999999999999887654   


Q ss_pred             hCCCcEEEecCCCCCCCCc----ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC-----CCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGEL----EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN-----GGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-----~~~~~iv~iss~~g~~g  179 (179)
                      ++++|++|||||.....++    .+.++++|++.+++|+.+++.++++++|.|.+...     ...++||++||.++..+
T Consensus        77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~  156 (257)
T 3tl3_A           77 MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDG  156 (257)
T ss_dssp             HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CC
T ss_pred             hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCC
Confidence            5799999999997654322    34789999999999999999999999999987310     12459999999987653

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.94  E-value=1.2e-25  Score=166.59  Aligned_cols=133  Identities=22%  Similarity=0.320  Sum_probs=117.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC-CCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG-PVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~-~id~li  116 (179)
                      |+++||||++|||+++|++|+++|++|++++|+++.+++..+++    +.++.++.+|+++.+++++++++.. ..|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----SNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----hhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            68999999999999999999999999999999998877665544    4567889999999999999998753 459999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.    +||++||.++..
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~----~iv~isS~~~~~  135 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPV----NVVMIMSTAAQQ  135 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC----EEEEECCGGGTS
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----eEEEEeecccCC
Confidence            9999988888889999999999999999999999999999976542    899999988764

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.94  E-value=1.7e-25  Score=167.84  Aligned_cols=131  Identities=24%  Similarity=0.369  Sum_probs=114.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||++|||++++++|+++|++|++++|+++.         ...+  +..+.+|++|++++++++++    +
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~~~~--~~~~~~D~~d~~~~~~~~~~~~~~~   72 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------EQYP--FATEVMDVADAAQVAQVCQRLLAET   72 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------SCCS--SEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------hcCC--ceEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999998652         1112  67789999999998887764    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||.....++.+.++++|++.+++|+.+++.++++++|.|++++.+   +||++||.++..
T Consensus        73 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g---~iv~isS~~~~~  138 (250)
T 2fwm_X           73 ERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGG---AIVTVASDAAHT  138 (250)
T ss_dssp             SCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCGGGTS
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCC---EEEEECchhhCC
Confidence            789999999998877788889999999999999999999999999999887544   999999988764

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.94  E-value=3.8e-25  Score=167.80  Aligned_cols=144  Identities=22%  Similarity=0.328  Sum_probs=120.8

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      +..+.+++|+++||||++|||++++++|+++|++|++++|+.+..++..+++..  ..++.++.+|++|++++++++++ 
T Consensus         9 ~~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A            9 SSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--PDVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             --CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC--CCceEEEECCCCCHHHHHHHHHHH
Confidence            344457899999999999999999999999999999999998776666555532  23688899999999999887764 


Q ss_pred             ---hCCCcEEEecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ---AGPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                         ++++|++|||||....  .++.+.+.++|++.+++|+.+++.+++.+.|.|++++.   ++||++||.++..
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~isS~~~~~  158 (278)
T 2bgk_A           87 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK---GSIVFTASISSFT  158 (278)
T ss_dssp             HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC---EEEEEECCGGGTC
T ss_pred             HHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC---CeEEEEeeccccC
Confidence               5789999999997653  46777899999999999999999999999999987654   4999999987754

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.94  E-value=2.5e-25  Score=165.79  Aligned_cols=137  Identities=30%  Similarity=0.398  Sum_probs=119.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      +|+++||||+||||++++++|+++|++|+++ +|+++..++..+++.. .+.++..+.+|+++++++++++++    +++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-HTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-cCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999984 7888777777666643 356788899999999998887764    578


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +|++|||||.....++.+.+.++|++.+++|+.+++.+++.+.|.|.+++.   ++||++||.++.
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~iv~~sS~~~~  142 (244)
T 1edo_A           80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK---GRIINIASVVGL  142 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCTHHH
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC---CEEEEECChhhc
Confidence            999999999888778888899999999999999999999999999987654   499999998664

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.94  E-value=3e-26  Score=175.45  Aligned_cols=134  Identities=28%  Similarity=0.380  Sum_probs=117.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      ..++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++.++.+|++|.+++++++++.++
T Consensus        11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~v~~~~~~~~~   86 (291)
T 3rd5_A           11 LPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM----AGQVEVRELDLQDLSSVRRFADGVSG   86 (291)
T ss_dssp             CCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS----SSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred             ccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----cCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence            34578999999999999999999999999999999999988777655443    56789999999999999999998889


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|+||||||...+  ..+.+.++|+..+++|+.|++.+++.++|.|.+       +||++||.++..
T Consensus        87 iD~lv~nAg~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-------riv~isS~~~~~  144 (291)
T 3rd5_A           87 ADVLINNAGIMAV--PYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-------RVVTVSSMAHWP  144 (291)
T ss_dssp             EEEEEECCCCCSC--CCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-------EEEEECCGGGTT
T ss_pred             CCEEEECCcCCCC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------heeEeechhhcc
Confidence            9999999998653  245678889999999999999999999998853       899999988764

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.94  E-value=2.5e-25  Score=168.27  Aligned_cols=142  Identities=24%  Similarity=0.314  Sum_probs=119.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++|+++||||++|||+++|++|+++|++|++. .|+.+..++..+++... +.++.++.+|++|.+++++++++    
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN-GGNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999665 56666777776666543 56788999999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|.+++.  .++||++||.++..
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~g~iv~isS~~~~~  169 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ--GGRIITLSSVSGVM  169 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCHHHHH
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CcEEEEEcchHhcc
Confidence            589999999999988888889999999999999999999999999998874432  34999999987654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.94  E-value=4.8e-25  Score=169.01  Aligned_cols=138  Identities=15%  Similarity=0.174  Sum_probs=115.7

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++||||+  +|||+++|++|+++|++|++++|+++..+.. +++.... .++.++.+|++|.+++++++++   
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~-~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRV-EPLAEEL-GAFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHH-HHHHHHH-TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHHHHhc-CCceEEECCCCCHHHHHHHHHHHHH
Confidence            4789999999999  4599999999999999999999996543333 3333322 3578899999999999887765   


Q ss_pred             -hCCCcEEEecCCCCC----CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFV----PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|+||||||...    ..++.+.++++|++.+++|+.+++.++++++|.|++  .   ++||++||.++..
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~---g~Iv~isS~~~~~  175 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD--G---GSILTLTYYGAEK  175 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT--C---EEEEEEECGGGTS
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC--C---CEEEEEeehhhcc
Confidence             589999999999876    467788999999999999999999999999999965  2   3999999988764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.94  E-value=2.3e-25  Score=167.89  Aligned_cols=141  Identities=29%  Similarity=0.390  Sum_probs=119.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++++|+++||||++|||++++++|+++|++|++++|++++.++..+++    +.++.++.+|++|++++++++++    
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL----GNNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999988777665554    45688899999999999887764    


Q ss_pred             hCCCcEEEecCCCCCCCCcc------cCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC---CCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELE------VQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN---GGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~---~~~~~iv~iss~~g~  177 (179)
                      ++++|+||||||.....++.      +.+.++|++.+++|+.+++.+++.+.|.|+++..   ++.++||++||.++.
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~  161 (265)
T 2o23_A           84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF  161 (265)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred             CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhc
Confidence            57899999999987655443      3789999999999999999999999999987621   124599999998764

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.94  E-value=1.2e-25  Score=187.15  Aligned_cols=140  Identities=31%  Similarity=0.446  Sum_probs=113.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh---------hHHHHHHHHHHhhcCceEEEEEeeCCCHHHH-
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG---------EKLEEAKQSIQLATGIEVATYSADVRDFDAV-  102 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~---------~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v-  102 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++++.         +.+++..+++... +.++.   +|.+|.+++ 
T Consensus         4 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~-g~~~~---~d~~d~~~~~   79 (604)
T 2et6_A            4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN-GGVAV---ADYNNVLDGD   79 (604)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT-TCEEE---EECCCTTCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc-CCeEE---EEcCCHHHHH
Confidence            347899999999999999999999999999999998765         5566666666543 44443   455555433 


Q ss_pred             ---HHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          103 ---KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       103 ---~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                         +++.+++|++|+||||||.....++.++++++|++++++|+.|+++++|+++|+|++++.|   +||++||.+|..|
T Consensus        80 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G---~IVnisS~ag~~~  156 (604)
T 2et6_A           80 KIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYG---RIVNTSSPAGLYG  156 (604)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHHC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC---EEEEECCHHHcCC
Confidence               4455668999999999999887888899999999999999999999999999999887644   9999999887543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.94  E-value=2.4e-25  Score=167.00  Aligned_cols=143  Identities=31%  Similarity=0.412  Sum_probs=121.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++|+++||||+||||++++++|+++|++|++++|+ ++..++..+++... +.++..+.+|++|++++++++++    
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD-GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT-TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999998 77777766666433 56788999999999998887764    


Q ss_pred             hCCCcEEEecCCC-CCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc--CCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGV-FVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ--NGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~~~iv~iss~~g~  177 (179)
                      ++++|++|||||. ....++.+.+.++|++.+++|+.+++.+++.++|.|.+++  .+..++||++||..+.
T Consensus        83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~  154 (258)
T 3afn_B           83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGH  154 (258)
T ss_dssp             HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHH
T ss_pred             cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhc
Confidence            5789999999997 5566778889999999999999999999999999997654  2223599999998764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.94  E-value=3e-25  Score=168.65  Aligned_cols=141  Identities=29%  Similarity=0.431  Sum_probs=120.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++++|+++||||+||||++++++|+++|++|++++|+++..++..+++.. .+.++..+.+|++|.+++++++++    +
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKT-YGVHSKAYKCNISDPKSVEETISQQEKDF  109 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHH-HCSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999998776666555533 356788899999999998887755    5


Q ss_pred             CCCcEEEecCCCCCC-CCcc-cCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVP-GELE-VQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~-~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.... .++. +.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus       110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~---~iv~isS~~~~~  177 (279)
T 3ctm_A          110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKG---SLIITSSISGKI  177 (279)
T ss_dssp             SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCCTTSC
T ss_pred             CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---eEEEECchHhcc
Confidence            789999999998765 5666 77889999999999999999999999999876544   999999988754

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.93  E-value=2.7e-25  Score=169.63  Aligned_cols=138  Identities=20%  Similarity=0.309  Sum_probs=115.3

Q ss_pred             cCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||+  +|||+++|++|+++|++|++++|+++ .++..+++....+ .+..+.+|++|++++++++++    
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG-SDLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            789999999999  99999999999999999999999875 3334444443323 367789999999998887664    


Q ss_pred             hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||....    .++.+.+.++|++.+++|+.|++.+++.+.|.|+++ .   ++||++||.++..
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~---g~iv~isS~~~~~  166 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR-N---GAIVTLSYYGAEK  166 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS-C---CEEEEEECGGGTS
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-C---CEEEEEccchhcc
Confidence            5799999999998764    567788999999999999999999999999999753 2   3999999987653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.93  E-value=4.9e-26  Score=170.50  Aligned_cols=133  Identities=29%  Similarity=0.479  Sum_probs=109.3

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ...++++|+++||||++|||++++++|+++|++|++++|++++.++            +..+.+|++|++++++++++  
T Consensus         9 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~------------~~~~~~D~~~~~~~~~~~~~~~   76 (247)
T 1uzm_A            9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG------------LFGVEVDVTDSDAVDRAFTAVE   76 (247)
T ss_dssp             CCCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------------SEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH------------hcCeeccCCCHHHHHHHHHHHH
Confidence            3445789999999999999999999999999999999998754321            11378999999998887654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|++|||||.....++.+.++++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        77 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~---g~iv~isS~~~~~  145 (247)
T 1uzm_A           77 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF---GRMIFIGSVSGLW  145 (247)
T ss_dssp             HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC---EEEEEECCCCC--
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC---CEEEEECCHhhcc
Confidence              578999999999887777888999999999999999999999999999987653   4999999998754

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.93  E-value=8.1e-26  Score=175.82  Aligned_cols=140  Identities=34%  Similarity=0.449  Sum_probs=117.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHh-----hcCceEEEEEeeCCCHHHHHHHHHhh-
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL-----ATGIEVATYSADVRDFDAVKTALDEA-  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----~~~~~v~~~~~D~~~~~~v~~~~~~~-  109 (179)
                      ++|+++||||++|||+++|++|+++|++|++++|+.+..++..+.+..     ..+.++..+.+|++|.+++++++++. 
T Consensus         1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            378999999999999999999999999998888765543333322221     12457888999999999999998863 


Q ss_pred             -CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 -GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 -~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       +++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g---~IV~isS~~~~~  147 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG---RVLVTGSVGGLM  147 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEEEEGGGTS
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---EEEEECCccccc
Confidence             689999999998877788889999999999999999999999999999876543   999999998765

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.93  E-value=1e-25  Score=170.54  Aligned_cols=132  Identities=24%  Similarity=0.368  Sum_probs=113.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.+..+            ....+.+|+++.+++++++++    
T Consensus        24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~------------~~~~~~~Dv~~~~~~~~~~~~~~~~   91 (266)
T 3uxy_A           24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA------------ADLHLPGDLREAAYADGLPGAVAAG   91 (266)
T ss_dssp             --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC------------CSEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH------------hhhccCcCCCCHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999999865322            113357899999998776654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++++|+||||||.....++.+.++++|++.+++|+.|++.++++++|.|++++.+   +||++||.++..+
T Consensus        92 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g---~iv~isS~~~~~~  159 (266)
T 3uxy_A           92 LGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG---AIVNVASCWGLRP  159 (266)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCSBTTBC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc---EEEEECCHHhCCC
Confidence            5899999999999888888899999999999999999999999999999887654   9999999987653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.93  E-value=9.1e-25  Score=166.30  Aligned_cols=143  Identities=22%  Similarity=0.338  Sum_probs=120.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---h
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---A  109 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~  109 (179)
                      +++++|+++||||++|||+++|++|+++|++|++++|++++.++..+++    +.++.++.+|++|.++++++++.   +
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL----GNRAEFVSTNVTSEDSVLAAIEAANQL  101 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999998887776665    45788999999999999888765   4


Q ss_pred             CCCcEEEec-CCCCCCCCc-----ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc---CCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVN-QGVFVPGEL-----EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ---NGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~-ag~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~~~~~iv~iss~~g~~g  179 (179)
                      +++|++||| +|......+     .+.+.++|++.+++|+.+++.+++.+.|.|.+..   ++..++||++||.++..+
T Consensus       102 ~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~  180 (281)
T 3ppi_A          102 GRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEG  180 (281)
T ss_dssp             SEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSC
T ss_pred             CCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCC
Confidence            689999999 555444433     3678999999999999999999999999997621   123459999999987653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.93  E-value=2.8e-25  Score=167.97  Aligned_cols=143  Identities=17%  Similarity=0.205  Sum_probs=116.0

Q ss_pred             CCCCcCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHH
Q 030328           29 KPVRIPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        29 ~~~~~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      ++...+.++|+++||||+  +|||+++|++|+++|++|++++|+.+..+. .+++.... .++.++.+|++|.+++++++
T Consensus         6 ~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~   83 (271)
T 3ek2_A            6 HHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDR-ITEFAAEF-GSELVFPCDVADDAQIDALF   83 (271)
T ss_dssp             ---CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHHHHT-TCCCEEECCTTCHHHHHHHH
T ss_pred             CCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHH-HHHHHHHc-CCcEEEECCCCCHHHHHHHH
Confidence            334456789999999998  999999999999999999999998654433 33343332 34778999999999998877


Q ss_pred             Hh----hCCCcEEEecCCCCCC----CCccc-CCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          107 DE----AGPVDVLVVNQGVFVP----GELEV-QSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       107 ~~----~~~id~li~~ag~~~~----~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++    ++++|+||||||....    .++.+ .+.++|++.+++|+.+++.+++.+.|.|++.     ++||++||.++.
T Consensus        84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----g~iv~isS~~~~  158 (271)
T 3ek2_A           84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDD-----ASLLTLSYLGAE  158 (271)
T ss_dssp             HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEE-----EEEEEEECGGGT
T ss_pred             HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccC-----ceEEEEeccccc
Confidence            65    4799999999998764    45555 8999999999999999999999999998642     389999998875


Q ss_pred             c
Q 030328          178 V  178 (179)
Q Consensus       178 ~  178 (179)
                      .
T Consensus       159 ~  159 (271)
T 3ek2_A          159 R  159 (271)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.93  E-value=1.3e-25  Score=187.04  Aligned_cols=140  Identities=31%  Similarity=0.461  Sum_probs=115.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeC-CCHHH-HHHHHHhhCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV-RDFDA-VKTALDEAGP  111 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~-~~~~~-v~~~~~~~~~  111 (179)
                      ++++|+++||||++|||+++|++|+++|++|++++++.  .++..+++.. .+.++..+.+|+ ++.+. ++++.+++|+
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~-~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~  395 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKA-AGGEAWPDQHDVAKDSEAIIKNVIDKYGT  395 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHH-TTCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHh-cCCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999998642  2344455543 355677778888 55443 3455666899


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|+||||||.....++.++++++|++++++|+.|+++++|+++|+|++++.|   +||++||.+|..|
T Consensus       396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G---~IVnisS~ag~~~  460 (604)
T 2et6_A          396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFG---RIINITSTSGIYG  460 (604)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE---EEEEECCHHHHSC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC---EEEEECChhhccC
Confidence            9999999999887888899999999999999999999999999999876544   9999999987653

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.93  E-value=3.1e-25  Score=167.32  Aligned_cols=138  Identities=18%  Similarity=0.286  Sum_probs=114.8

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++||||+  +|||+++|++|+++|++|++++|+++ .++..+++....+ .+..+.+|++|++++++++++   
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG-GALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999999999  99999999999999999999999875 3333444433323 367889999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|+||||||....    .++.+.+.++|++.+++|+.+++++++++.|.|++  .   ++||++||.++..
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~---g~iv~isS~~~~~  152 (261)
T 2wyu_A           83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--G---GGIVTLTYYASEK  152 (261)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--E---EEEEEEECGGGTS
T ss_pred             HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc--C---CEEEEEecccccC
Confidence             5789999999998763    56778899999999999999999999999999863  2   3999999987653

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.93  E-value=3.2e-25  Score=168.46  Aligned_cols=137  Identities=18%  Similarity=0.276  Sum_probs=115.1

Q ss_pred             cCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||+  +|||+++|++|+++|++|++++|+++ .++..+++....+ .+..+.+|++|++++++++++    
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC-CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            578999999999  99999999999999999999999876 3444444443323 367889999999998887764    


Q ss_pred             hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||....    .++.+.+.++|++.+++|+.+++.+++.++|.|++  .   ++||++||.++..
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~---g~iv~isS~~~~~  150 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN--G---ASVLTLSYLGSTK  150 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E---EEEEEEECGGGTS
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--C---CEEEEEecchhcC
Confidence            5789999999998764    56778899999999999999999999999999864  1   3999999987754

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.93  E-value=7.1e-25  Score=163.37  Aligned_cols=137  Identities=26%  Similarity=0.364  Sum_probs=117.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEE-EEeeCCCHHHHHHHHHh----hC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVAT-YSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~-~~~D~~~~~~v~~~~~~----~~  110 (179)
                      +|+++||||+||||++++++|+++|++|+++ +|++++.++..+++... +.++.. +.+|++|.+++++++++    ++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR-GSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT-TCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-CCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999998 88888777766666442 445556 89999999998887654    57


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++.+.   ++||++||.++.
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~---~~iv~~sS~~~~  143 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARF---GRIVNITSVVGI  143 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCTHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC---CEEEEEeChhhc
Confidence            8999999999887777888899999999999999999999999999987654   499999998654

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.93  E-value=6.7e-25  Score=163.44  Aligned_cols=129  Identities=28%  Similarity=0.376  Sum_probs=111.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hhCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EAGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~~~i  112 (179)
                      +|+++||||++|||++++++|+++|++|++++|++++.   .+++    +  +..+.+|+++ ++++++++    .++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~----~--~~~~~~D~~~-~~~~~~~~~~~~~~g~i   71 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSL----G--AVPLPTDLEK-DDPKGLVKRALEALGGL   71 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHH----T--CEEEECCTTT-SCHHHHHHHHHHHHTSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhh----C--cEEEecCCch-HHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999999997652   2222    2  5678999999 77766554    46899


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        72 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  134 (239)
T 2ekp_A           72 HVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGW---GRVLFIGSVTTFT  134 (239)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEECchhhcc
Confidence            99999999887778888999999999999999999999999999987654   4999999988754

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.93  E-value=6.2e-25  Score=164.76  Aligned_cols=139  Identities=27%  Similarity=0.378  Sum_probs=119.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh----
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA----  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~----  109 (179)
                      +++|+++||||++|||+++|++|+++|++|+++ .|+.+..++..+++.. .+.++..+.+|+++.+++++++++.    
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS-NGGSAFSIGANLESLHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHH-TTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh-cCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999885 6667777777776654 3667888999999999988876542    


Q ss_pred             ------CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 ------GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ------~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                            +++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++.     ++||++||.++..|
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-----~~iv~isS~~~~~~  154 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-----SRIINISSAATRIS  154 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-----EEEEEECCGGGTSC
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCC-----CEEEEeCChhhccC
Confidence                  359999999999887788889999999999999999999999999998332     39999999987653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.93  E-value=6.6e-25  Score=164.54  Aligned_cols=135  Identities=25%  Similarity=0.374  Sum_probs=111.8

Q ss_pred             CCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        29 ~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .+....+++|+++||||++|||+++|++|+++|++|++++|+++..+    ++    + .+..+ +|+  .+++++++++
T Consensus        11 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~----~-~~~~~-~D~--~~~~~~~~~~   78 (249)
T 1o5i_A           11 HHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RS----G-HRYVV-CDL--RKDLDLLFEK   78 (249)
T ss_dssp             -----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HT----C-SEEEE-CCT--TTCHHHHHHH
T ss_pred             hhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hh----C-CeEEE-eeH--HHHHHHHHHH
Confidence            34445678999999999999999999999999999999999874322    22    2 45666 999  4567888887


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ..++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++.   ++||++||.++..
T Consensus        79 ~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  145 (249)
T 1o5i_A           79 VKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW---GRIVAITSFSVIS  145 (249)
T ss_dssp             SCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC---EEEEEECCGGGTS
T ss_pred             hcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEEcchHhcC
Confidence            778999999999887778888999999999999999999999999999988654   4999999988754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.93  E-value=1.1e-24  Score=164.75  Aligned_cols=136  Identities=24%  Similarity=0.321  Sum_probs=114.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++|+++||||++|||++++++|+++|++|++++|++++.++..+++.... +.++..+.+|++|++++++++++    +
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999999999887777666664322 34688899999999998887654    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||...        +++|++.+++|+.+++.+++.++|.|++.+.+..++||++||.++..
T Consensus        85 g~id~lv~~Ag~~~--------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  145 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM  145 (267)
T ss_dssp             SCCCEEEECCCCCC--------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCC--------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC
Confidence            88999999999642        35688999999999999999999999876432346999999998764

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.93  E-value=1.6e-25  Score=165.24  Aligned_cols=119  Identities=24%  Similarity=0.355  Sum_probs=107.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|+++                     +|++|++++++++++++++|
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---------------------~D~~~~~~v~~~~~~~g~id   61 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG---------------------LDISDEKSVYHYFETIGAFD   61 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT---------------------CCTTCHHHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc---------------------cCCCCHHHHHHHHHHhCCCC
Confidence            467999999999999999999999999999999999764                     79999999999999999999


Q ss_pred             EEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          114 VLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       114 ~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|||||.. ...++.+.+.++|++.+++|+.+++.+++++.|.|++.     ++||++||.++..
T Consensus        62 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-----g~iv~~sS~~~~~  122 (223)
T 3uce_A           62 HLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-----GSITLTSGMLSRK  122 (223)
T ss_dssp             EEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-----EEEEEECCGGGTS
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-----eEEEEecchhhcc
Confidence            999999987 55678889999999999999999999999999998652     3999999988764

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.93  E-value=6.3e-25  Score=170.26  Aligned_cols=139  Identities=25%  Similarity=0.362  Sum_probs=115.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec---------ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR---------SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVK  103 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r---------~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~  103 (179)
                      +++++|+++||||++|||+++|++|+++|++|+++++         +.++.++..+++... +..   ..+|+++.++++
T Consensus         5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~-~~~---~~~D~~~~~~~~   80 (319)
T 1gz6_A            5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-GGK---AVANYDSVEAGE   80 (319)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-TCE---EEEECCCGGGHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh-CCe---EEEeCCCHHHHH
Confidence            3578999999999999999999999999999999754         566677666666543 333   247999987766


Q ss_pred             HHH----HhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          104 TAL----DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       104 ~~~----~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++    +.++++|+||||||.....++.+.+.++|+..+++|+.|++.+++.++|.|++++.   ++||++||.++..
T Consensus        81 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~---grIV~vsS~~~~~  156 (319)
T 1gz6_A           81 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY---GRIIMTASASGIY  156 (319)
T ss_dssp             HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---EEEEEECCHHHHH
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---CEEEEECChhhcc
Confidence            654    44689999999999888777888999999999999999999999999999988754   4999999986643

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.93  E-value=4e-25  Score=167.01  Aligned_cols=137  Identities=17%  Similarity=0.247  Sum_probs=113.4

Q ss_pred             cCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +++|+++||||+  +|||+++|++|+++|++|++++|++ +.++..+++....+. ...+.+|++|++++++++++    
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGS-DIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTC-CCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCC-cEEEEccCCCHHHHHHHHHHHHHH
Confidence            689999999999  9999999999999999999999987 333444444333232 36789999999999887765    


Q ss_pred             hCCCcEEEecCCCCCC----CCccc-CCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVP----GELEV-QSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~----~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++++|+||||||....    .++.+ .+.++|++.+++|+.+++++++++.|.|++  .   ++||++||.++..
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~---g~iv~isS~~~~~  154 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--G---SALLTLSYLGAER  154 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E---EEEEEEECGGGTS
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--C---CEEEEEcchhhcc
Confidence            4789999999998663    56667 899999999999999999999999999863  2   3999999987653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.93  E-value=1.2e-24  Score=165.70  Aligned_cols=139  Identities=16%  Similarity=0.198  Sum_probs=115.0

Q ss_pred             CcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++|+++||||+  +|||+++|++|+++|++|++++|+.  .++..+++.... .++..+.+|+++.+++++++++   
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEF-NPAAVLPCDVISDQEIKDLFVELGK   99 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGG-CCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhc-CCceEEEeecCCHHHHHHHHHHHHH
Confidence            5789999999988  7799999999999999999999987  233334443332 3478899999999999887765   


Q ss_pred             -hCCCcEEEecCCCCCC----CCccc-CCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVP----GELEV-QSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~----~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|++|||||....    .++.+ .+.++|++.+++|+.+++.+++++.|.|+++.    ++||++||.++..+
T Consensus       100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~----g~iv~isS~~~~~~  172 (280)
T 3nrc_A          100 VWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRN----ASMVALTYIGAEKA  172 (280)
T ss_dssp             HCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT----CEEEEEECGGGTSC
T ss_pred             HcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CeEEEEeccccccC
Confidence             4799999999998764    34444 89999999999999999999999999997652    39999999887643

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.93  E-value=1.3e-24  Score=164.36  Aligned_cols=142  Identities=23%  Similarity=0.298  Sum_probs=121.1

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ...+.+++|+++||||+||||++++++|+++|++|++++| +++..++..+++.. .+.++..+.+|++|++++++++++
T Consensus        14 ~~~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~   92 (274)
T 1ja9_A           14 DASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK-LGAQGVAIQADISKPSEVVALFDK   92 (274)
T ss_dssp             --CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHH
Confidence            3445578999999999999999999999999999999999 77777666666643 356788899999999998887764


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                          ++++|++|||||.....++.+.+.++|++.+++|+.+++.++++++|.|++ +    ++||++||.++.
T Consensus        93 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~----~~iv~~sS~~~~  160 (274)
T 1ja9_A           93 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR-G----GRIILTSSIAAV  160 (274)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE-E----EEEEEECCGGGT
T ss_pred             HHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-C----CEEEEEcChHhc
Confidence                578999999999887777888899999999999999999999999999862 2    399999998765

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.92  E-value=2.5e-24  Score=160.56  Aligned_cols=139  Identities=27%  Similarity=0.356  Sum_probs=117.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++|+++||||++|||++++++|+++|  ++|++++|+++..++..+ +   .+.++.++.+|+++.+++++++++    +
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~-~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS-I---KDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT-C---CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh-c---cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999  999999999877654422 1   255788999999999998887765    3


Q ss_pred             C--CCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhc------cC--CCCcEEEEecccCccc
Q 030328          110 G--PVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKR------QN--GGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~--~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~------~~--~~~~~iv~iss~~g~~  178 (179)
                      +  ++|++|||||... ..++.+.+.+++++.+++|+.+++.+++.++|.|.++      +.  +..++||++||.++..
T Consensus        78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  157 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI  157 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred             CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence            4  8999999999877 6677888999999999999999999999999999775      30  0134999999987754

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.92  E-value=1.5e-24  Score=164.18  Aligned_cols=134  Identities=17%  Similarity=0.245  Sum_probs=113.2

Q ss_pred             CcCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           34 PIKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        34 ~~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      .+++|+++||||  ++|||+++|++|+++|++|++++|++++ .++..++    .+.++..+.+|++|++++++++++  
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDR----LPAKAPLLELDVQNEEHLASLAGRVT   79 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTT----SSSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHh----cCCCceEEEccCCCHHHHHHHHHHHH
Confidence            468999999999  9999999999999999999999998765 2333322    245677889999999998887764  


Q ss_pred             --hC---CCcEEEecCCCCC-----CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          109 --AG---PVDVLVVNQGVFV-----PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       109 --~~---~id~li~~ag~~~-----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                        ++   ++|+||||||...     ..++.+.++++|++.+++|+.+++.++++++|.|++.     ++||++||..+
T Consensus        80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-----g~iv~iss~~~  152 (269)
T 2h7i_A           80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG-----GSIVGMDFDPS  152 (269)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-----EEEEEEECCCS
T ss_pred             HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC-----CeEEEEcCccc
Confidence              46   8999999999876     4577888999999999999999999999999998642     39999998764

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.92  E-value=4.9e-25  Score=183.97  Aligned_cols=141  Identities=30%  Similarity=0.396  Sum_probs=110.6

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec---------ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR---------SGEKLEEAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r---------~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      ....+++|+++||||++|||+++|++|+++|++|++++|         +.+..++..+++... +..+   .+|+++.++
T Consensus        13 ~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~-~~~~---~~D~~d~~~   88 (613)
T 3oml_A           13 GKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA-GGEA---VADYNSVID   88 (613)
T ss_dssp             --CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT-TCCE---EECCCCGGG
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh-CCeE---EEEeCCHHH
Confidence            344678999999999999999999999999999999988         556666666666543 3333   479998887


Q ss_pred             HHHHHHh----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          102 VKTALDE----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       102 v~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++++++    ++++|+||||||.....++.+.+.++|+.++++|+.|+++++++++|.|++++.|   +||++||.++.
T Consensus        89 ~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g---~IV~isS~a~~  165 (613)
T 3oml_A           89 GAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYG---RIIMTSSNSGI  165 (613)
T ss_dssp             HHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE---EEEEECCHHHH
T ss_pred             HHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---EEEEECCHHHc
Confidence            7776654    5799999999999888888899999999999999999999999999999887644   99999998775


Q ss_pred             c
Q 030328          178 V  178 (179)
Q Consensus       178 ~  178 (179)
                      .
T Consensus       166 ~  166 (613)
T 3oml_A          166 Y  166 (613)
T ss_dssp             H
T ss_pred             C
Confidence            4

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.92  E-value=4.7e-24  Score=160.28  Aligned_cols=134  Identities=18%  Similarity=0.199  Sum_probs=110.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH-HHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA-VKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-v~~~~~~~~~id~li  116 (179)
                      |+++||||++|||+++|++|+++|++|++++|++++.++..+ +... +.++..+  |..+.+. ++++.+.++++|+||
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~-~~~~~~~--d~~~v~~~~~~~~~~~g~iD~lv   77 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET-YPQLKPM--SEQEPAELIEAVTSAYGQVDVLV   77 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH-CTTSEEC--CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc-CCcEEEE--CHHHHHHHHHHHHHHhCCCCEEE
Confidence            689999999999999999999999999999999887766544 4332 4444433  5555444 344555678999999


Q ss_pred             ecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          117 VNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       117 ~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||||.. ...++.+.+.++|++.+++|+.+++.+++.++|.|++++.+   +||++||.++..
T Consensus        78 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g---~iv~isS~~~~~  137 (254)
T 1zmt_A           78 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG---HIIFITSATPFG  137 (254)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCSTTTS
T ss_pred             ECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc---EEEEECCccccc
Confidence            999987 66778889999999999999999999999999999877544   999999998764

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.92  E-value=4.8e-24  Score=160.03  Aligned_cols=135  Identities=22%  Similarity=0.321  Sum_probs=108.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCH-HHHHHHHHh--
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDF-DAVKTALDE--  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~-~~v~~~~~~--  108 (179)
                      ++++|+++||||++|||+++|++|+++|++ |++++|+++.  +..+++... .+.++..+.+|++|+ +++++++++  
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence            468999999999999999999999999997 9999998642  112223222 245788899999997 888776654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                        ++++|++|||||..        ++++|++.+++|+.+++.++++++|.|.+++.+..++||++||.++..
T Consensus        80 ~~~g~id~lv~~Ag~~--------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~  143 (254)
T 1sby_A           80 DQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN  143 (254)
T ss_dssp             HHHSCCCEEEECCCCC--------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred             HhcCCCCEEEECCccC--------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc
Confidence              57899999999963        346789999999999999999999999776532345999999988754

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.92  E-value=5e-24  Score=160.83  Aligned_cols=148  Identities=25%  Similarity=0.332  Sum_probs=117.7

Q ss_pred             CCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcC---CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEG---ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        29 ~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      .+....+++|+++||||++|||+++|++|+++|   ++|++++|+.+..++. +++... +.++.++.+|+++.++++++
T Consensus        13 ~~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~-~~~~~~~~~Dl~~~~~v~~~   90 (267)
T 1sny_A           13 GLVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN-HSNIHILEIDLRNFDAYDKL   90 (267)
T ss_dssp             -------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH-CTTEEEEECCTTCGGGHHHH
T ss_pred             cccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc-CCceEEEEecCCChHHHHHH
Confidence            334445789999999999999999999999999   9999999998765543 333322 45788999999999998887


Q ss_pred             HHh----hC--CCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhc------cC--CCCcEEEE
Q 030328          106 LDE----AG--PVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKR------QN--GGPASIAL  170 (179)
Q Consensus       106 ~~~----~~--~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~------~~--~~~~~iv~  170 (179)
                      +++    ++  ++|++|||||... ..++.+.+.+++++.+++|+.+++.+++.+.|.|.++      +.  ...++||+
T Consensus        91 ~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  170 (267)
T 1sny_A           91 VADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN  170 (267)
T ss_dssp             HHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEE
T ss_pred             HHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEE
Confidence            764    34  7999999999877 6677888999999999999999999999999999876      20  01249999


Q ss_pred             ecccCccc
Q 030328          171 MSSQAGQV  178 (179)
Q Consensus       171 iss~~g~~  178 (179)
                      +||.++..
T Consensus       171 isS~~~~~  178 (267)
T 1sny_A          171 MSSILGSI  178 (267)
T ss_dssp             ECCGGGCS
T ss_pred             Eecccccc
Confidence            99987754

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.92  E-value=1.1e-24  Score=162.53  Aligned_cols=128  Identities=15%  Similarity=0.116  Sum_probs=109.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h-
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A-  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~-  109 (179)
                      .++|+++||||++|||++++++|+++|++|++++|++++.+           .....+.+|++|++++++++++    + 
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~D~~~~~~v~~~~~~~~~~~~   73 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----------SASVIVKMTDSFTEQADQVTAEVGKLLG   73 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-----------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999875422           1356678999999998887765    4 


Q ss_pred             -CCCcEEEecCCCCCCCCc-ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 -GPVDVLVVNQGVFVPGEL-EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 -~~id~li~~ag~~~~~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       +++|++|||||.....++ .+.+.++|++.+++|+.+++.+++.+.|.|++.     ++||++||.++..
T Consensus        74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-----g~iv~isS~~~~~  139 (241)
T 1dhr_A           74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-----GLLTLAGAKAALD  139 (241)
T ss_dssp             TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-----EEEEEECCGGGGS
T ss_pred             CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC-----CEEEEECCHHHcc
Confidence             689999999998776666 678889999999999999999999999998642     3999999988764

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.92  E-value=3.1e-24  Score=160.36  Aligned_cols=132  Identities=18%  Similarity=0.209  Sum_probs=107.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEE-e--cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH-HHHHHHhhCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSIL-A--RSGEKLEEAKQSIQLATGIEVATYSADVRDFDA-VKTALDEAGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~-~--r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-v~~~~~~~~~i  112 (179)
                      +|+++||||++|||++++++|+++|++|+++ +  |++++.++..+++   .+.++.    |..+.+. ++++.+.++++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~---~~~~~~----~~~~v~~~~~~~~~~~g~i   73 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN---PGTIAL----AEQKPERLVDATLQHGEAI   73 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS---TTEEEC----CCCCGGGHHHHHGGGSSCE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh---CCCccc----CHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999999999 6  9988777666554   132221    4333322 33444556899


Q ss_pred             cEEEecCCCCCC---CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          113 DVLVVNQGVFVP---GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       113 d~li~~ag~~~~---~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |+||||||....   .++.+.+.++|++.+++|+.+++.++++++|.|++++.   ++||++||.++..
T Consensus        74 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~---g~iv~isS~~~~~  139 (244)
T 1zmo_A           74 DTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGG---ASVIFITSSVGKK  139 (244)
T ss_dssp             EEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC---EEEEEECCGGGTS
T ss_pred             CEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC---cEEEEECChhhCC
Confidence            999999998877   78888999999999999999999999999999987654   4999999988764

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.91  E-value=1.4e-24  Score=161.44  Aligned_cols=127  Identities=18%  Similarity=0.177  Sum_probs=109.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h--
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A--  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~--  109 (179)
                      ++|+++||||++|||++++++|+++|++|++++|+++..+           .....+.+|++|.+++++++++    +  
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   70 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----------DSNILVDGNKNWTEQEQSILEQTASSLQG   70 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-----------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999999999999876422           1356678999999998877664    4  


Q ss_pred             CCCcEEEecCCCCCCCCc-ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPGEL-EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....++ .+.+.++|++.+++|+.+++.+++.+.|.|++.     ++||++||.++..
T Consensus        71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-----g~iv~isS~~~~~  135 (236)
T 1ooe_A           71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-----GLLQLTGAAAAMG  135 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-----EEEEEECCGGGGS
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC-----CEEEEECchhhcc
Confidence            689999999998776666 677889999999999999999999999998642     3999999988764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.91  E-value=1.1e-24  Score=162.79  Aligned_cols=134  Identities=22%  Similarity=0.326  Sum_probs=97.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHH---HHHHhhC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVK---TALDEAG  110 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~---~~~~~~~  110 (179)
                      .+++|+++||||++|||+++|++|++ |++|++++|+++..++..+      ..++..+.+|+++.+..+   +.+++++
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~   74 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE------IEGVEPIESDIVKEVLEEGGVDKLKNLD   74 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT------STTEEEEECCHHHHHHTSSSCGGGTTCS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh------hcCCcceecccchHHHHHHHHHHHHhcC
Confidence            46799999999999999999999998 9999999999887665433      234778899998876522   2344567


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++ +   +||++||.++..
T Consensus        75 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g---~iv~isS~~~~~  138 (245)
T 3e9n_A           75 HVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-G---CVIYINSGAGNG  138 (245)
T ss_dssp             CCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEEC------
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C---eEEEEcCccccc
Confidence            899999999998888888889999999999999999999999999998764 3   999999988764

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.91  E-value=9.6e-24  Score=170.51  Aligned_cols=139  Identities=26%  Similarity=0.351  Sum_probs=114.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .+++|+++||||++|||+++|++|+++|++|++++|+... ++..+... ..+  +..+.+|++|.+++++++++    +
T Consensus       210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~-~~~--~~~~~~Dvtd~~~v~~~~~~~~~~~  285 (454)
T 3u0b_A          210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVAD-KVG--GTALTLDVTADDAVDKITAHVTEHH  285 (454)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHH-HHT--CEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHH-HcC--CeEEEEecCCHHHHHHHHHHHHHHc
Confidence            4589999999999999999999999999999999987532 22222221 122  45789999999998887764    4


Q ss_pred             C-CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 G-PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~-~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      + ++|++|||||......+.+.++++|++++++|+.|++++++.+.|.|.+++.   ++||++||.++..|
T Consensus       286 g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~---g~iV~iSS~a~~~g  353 (454)
T 3u0b_A          286 GGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEG---GRVIGLSSMAGIAG  353 (454)
T ss_dssp             TTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTT---CEEEEECCHHHHHC
T ss_pred             CCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---CEEEEEeChHhCCC
Confidence            5 4999999999998888999999999999999999999999999998876554   49999999887643

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.91  E-value=6.7e-24  Score=158.47  Aligned_cols=129  Identities=21%  Similarity=0.285  Sum_probs=111.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGP  111 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~  111 (179)
                      .++|+++||||++|||+++|++|++ .|++|++++|+++.           ....+..+.+|++|.++++++++.  .++
T Consensus         2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~-----------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   70 (244)
T 4e4y_A            2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF-----------SAENLKFIKADLTKQQDITNVLDIIKNVS   70 (244)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC-----------CCTTEEEEECCTTCHHHHHHHHHHTTTCC
T ss_pred             CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc-----------ccccceEEecCcCCHHHHHHHHHHHHhCC
Confidence            3689999999999999999999999 78999999987641           123467899999999999998864  358


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|++|||||.....++.+.++++|++.+++|+.+++++++++.|.|++.     ++||++||.++..+
T Consensus        71 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-----g~iv~~sS~~~~~~  133 (244)
T 4e4y_A           71 FDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG-----ASIVFNGSDQCFIA  133 (244)
T ss_dssp             EEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE-----EEEEEECCGGGTCC
T ss_pred             CCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC-----cEEEEECCHHHccC
Confidence            9999999999888888899999999999999999999999999998654     38999999987643

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.91  E-value=5.3e-24  Score=159.75  Aligned_cols=133  Identities=16%  Similarity=0.217  Sum_probs=107.5

Q ss_pred             CCCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           29 KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        29 ~~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ........+|+++||||++|||+++|++|+++|++|++++|++++.+             ...+.+|++|.+++++++++
T Consensus        14 ~~~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~d~~d~~~v~~~~~~   80 (251)
T 3orf_A           14 LVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA-------------DHSFTIKDSGEEEIKSVIEK   80 (251)
T ss_dssp             --------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS-------------SEEEECSCSSHHHHHHHHHH
T ss_pred             ccccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------------ccceEEEeCCHHHHHHHHHH
Confidence            33444456899999999999999999999999999999999876422             12467899999999887765


Q ss_pred             ----hCCCcEEEecCCCCCCCC-cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 ----AGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                          ++++|++|||||.....+ +.+.+.++|++.+++|+.+++.+++++.|.|++.     ++||++||.++..|
T Consensus        81 ~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-----g~iv~isS~~~~~~  151 (251)
T 3orf_A           81 INSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-----GLFVLTGASAALNR  151 (251)
T ss_dssp             HHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-----EEEEEECCGGGGSC
T ss_pred             HHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-----CEEEEEechhhccC
Confidence                478999999999876654 6677899999999999999999999999998652     39999999987643

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.91  E-value=1.1e-23  Score=159.08  Aligned_cols=136  Identities=25%  Similarity=0.334  Sum_probs=114.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++|+++||||+||||++++++|++ +|++|++++|+.+..++..+++... +.++.++.+|++|.+++++++++    +
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc-CCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999 9999999999988887777776543 55688899999999998887764    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCC-HHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQS-LDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|+||||||....... +.+ .++++..+++|+.+++.+++.+.|.|++.     ++||++||.++.
T Consensus        81 g~id~li~~Ag~~~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-----g~iv~~sS~~~~  143 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVAD-PTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-----GRVVNVSSIMSV  143 (276)
T ss_dssp             SSEEEEEECCCCCCCTTC-CSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-----EEEEEECCHHHH
T ss_pred             CCCCEEEECCcccccCCC-ccccHHHHHhhhheeeeeHHHHHHHHHHhhCCC-----CEEEEECChhhh
Confidence            789999999997654432 334 58899999999999999999999988642     399999997654

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.90  E-value=3.2e-23  Score=170.09  Aligned_cols=141  Identities=19%  Similarity=0.246  Sum_probs=118.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEE-ecCh-------------hHHHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSIL-ARSG-------------EKLEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~-~r~~-------------~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      .+|++|||||+||||.++|++|+++|++ ++++ +|+.             +..++..+++.. .+.++.++.+|++|.+
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~v~~~~~Dvtd~~  328 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELAD-LGATATVVTCDLTDAE  328 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHH-HTCEEEEEECCTTSHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHh-cCCEEEEEECCCCCHH
Confidence            6899999999999999999999999998 6677 8873             344555555543 3778999999999999


Q ss_pred             HHHHHHHh---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          101 AVKTALDE---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       101 ~v~~~~~~---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++++++   ++++|+||||||.....++.+.+.+++++++++|+.|++++.+.+.|.|++++  ..++||++||.++.
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~--~~~~iV~~SS~a~~  406 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGG--RPPVLVLFSSVAAI  406 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC------CCCEEEEEEEGGGT
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCC--CCCEEEEECCHHHc
Confidence            99999886   47899999999999888999999999999999999999999999999886653  13499999999987


Q ss_pred             cC
Q 030328          178 VG  179 (179)
Q Consensus       178 ~g  179 (179)
                      .|
T Consensus       407 ~g  408 (525)
T 3qp9_A          407 WG  408 (525)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.90  E-value=4.6e-23  Score=162.30  Aligned_cols=139  Identities=17%  Similarity=0.154  Sum_probs=109.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecChhHHH------------HHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAK-EGARVSILARSGEKLE------------EAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~~~~~~------------~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      -.+|++|||||++|||+++|+.|++ .|++|++++++.+..+            ...+++. ..+.++..+.+|++++++
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~-~~G~~a~~i~~Dvtd~~~  123 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAA-QKGLYAKSINGDAFSDEI  123 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHH-HTTCCEEEEESCTTSHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHH-hcCCceEEEECCCCCHHH
Confidence            3689999999999999999999999 9999999998754321            1222332 346778889999999999


Q ss_pred             HHHHHHh----hCCCcEEEecCCCC-------------CCCCc---------------------ccCCHHHHHHHHHhhh
Q 030328          102 VKTALDE----AGPVDVLVVNQGVF-------------VPGEL---------------------EVQSLDEVRLMIDVNI  143 (179)
Q Consensus       102 v~~~~~~----~~~id~li~~ag~~-------------~~~~~---------------------~~~~~~~~~~~~~~n~  143 (179)
                      +++++++    +|++|+||||||..             ...++                     .+.++++|++++++|.
T Consensus       124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~  203 (405)
T 3zu3_A          124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG  203 (405)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence            8877654    68999999999974             22344                     6789999999999999


Q ss_pred             hHHH-HHHHHHcHH-HHhccCCCCcEEEEecccCccc
Q 030328          144 IGSF-HMIKAALPL-IKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       144 ~~~~-~l~~~~~~~-~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .+++ .+++++.+. |.+ ++   ++||++||+++..
T Consensus       204 ~~~~~~~~~~~~~~~m~~-~g---G~IVniSSi~~~~  236 (405)
T 3zu3_A          204 GEDWQMWIDALLDAGVLA-EG---AQTTAFTYLGEKI  236 (405)
T ss_dssp             SHHHHHHHHHHHHHTCEE-EE---EEEEEEECCCCGG
T ss_pred             hhHHHHHHHHHHHHhhhh-CC---cEEEEEeCchhhC
Confidence            9998 778877654 443 22   4999999998764

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.89  E-value=7.8e-24  Score=164.71  Aligned_cols=139  Identities=15%  Similarity=0.106  Sum_probs=108.3

Q ss_pred             CCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhH---------HHHHHHHHHh--hcCceEEEEEeeCCCH--H
Q 030328           36 KDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEK---------LEEAKQSIQL--ATGIEVATYSADVRDF--D  100 (179)
Q Consensus        36 ~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~---------~~~~~~~~~~--~~~~~v~~~~~D~~~~--~  100 (179)
                      .+|+++||||++  |||+++|++|+++|++|+++++++..         .+...+....  .....+..+.+|+++.  +
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            478999999986  99999999999999999988876521         1111111111  0123467889999877  6


Q ss_pred             ------------------HHHHHHH----hhCCCcEEEecCCCC--CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHH
Q 030328          101 ------------------AVKTALD----EAGPVDVLVVNQGVF--VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL  156 (179)
Q Consensus       101 ------------------~v~~~~~----~~~~id~li~~ag~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  156 (179)
                                        +++++++    +++++|+||||||..  ...++.+.+.++|++++++|+.|++.+++.++|.
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              6665554    468999999999974  3567888999999999999999999999999999


Q ss_pred             HHhccCCCCcEEEEecccCcccC
Q 030328          157 IKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       157 ~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |+++     ++||++||.++..+
T Consensus       161 m~~~-----g~Iv~isS~~~~~~  178 (329)
T 3lt0_A          161 MKPQ-----SSIISLTYHASQKV  178 (329)
T ss_dssp             EEEE-----EEEEEEECGGGTSC
T ss_pred             HhhC-----CeEEEEeCccccCC
Confidence            9764     39999999987653

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.89  E-value=8.2e-23  Score=162.08  Aligned_cols=139  Identities=22%  Similarity=0.138  Sum_probs=108.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecChhHHHH------------HHHHHHhhcCceEEEEEeeCCCHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEE------------AKQSIQLATGIEVATYSADVRDFDAV  102 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~------------~~~~~~~~~~~~v~~~~~D~~~~~~v  102 (179)
                      .+|++|||||++|||+++|+.|++ .|++|++++|+.+..++            ..+++. ..+.++..+.+|+++++++
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~-~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAK-AAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHH-HTTCCEEEEESCTTSHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHH-hcCCcEEEEEecCCCHHHH
Confidence            589999999999999999999999 99999999987654321            223332 3467788999999999998


Q ss_pred             HHHHH----hh-CCCcEEEecCCCC-------------CCCCc---------------------ccCCHHHHHHHHHhhh
Q 030328          103 KTALD----EA-GPVDVLVVNQGVF-------------VPGEL---------------------EVQSLDEVRLMIDVNI  143 (179)
Q Consensus       103 ~~~~~----~~-~~id~li~~ag~~-------------~~~~~---------------------~~~~~~~~~~~~~~n~  143 (179)
                      +++++    .+ |++|+||||||..             ...++                     .+.++++|++++++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~  218 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG  218 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence            77664    46 8999999999872             22333                     3579999999999999


Q ss_pred             hHHH-HHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          144 IGSF-HMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       144 ~~~~-~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      .+++ .+++++.+.+..+++   ++||++||+++..
T Consensus       219 ~~~~~~~~~a~~~~~m~~~g---G~IVniSSi~g~~  251 (422)
T 3s8m_A          219 GQDWELWIDALEGAGVLADG---ARSVAFSYIGTEI  251 (422)
T ss_dssp             SHHHHHHHHHHHHTTCEEEE---EEEEEEEECCCGG
T ss_pred             hhHHHHHHHHHHHHHHhhCC---CEEEEEeCchhhc
Confidence            9987 778877654322222   4999999998865

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.89  E-value=1.2e-22  Score=147.38  Aligned_cols=116  Identities=17%  Similarity=0.309  Sum_probs=104.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|+||++++++|+ +|++|++++|+++                  .+.+|+++++++++++++.+++|++|||
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~------------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG------------------DVTVDITNIDSIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS------------------SEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc------------------ceeeecCCHHHHHHHHHHhCCCCEEEEC
Confidence            79999999999999999999 9999999999864                  3679999999999999988889999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||.....++.+.++++|++.+++|+.+++.+++.+.|.|++.     ++|+++||.++..
T Consensus        66 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~iv~~sS~~~~~  120 (202)
T 3d7l_A           66 TGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-----GSFTLTTGIMMED  120 (202)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-----EEEEEECCGGGTS
T ss_pred             CCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-----CEEEEEcchhhcC
Confidence            998877788888999999999999999999999999988542     3999999987653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.89  E-value=1.1e-22  Score=151.04  Aligned_cols=129  Identities=26%  Similarity=0.385  Sum_probs=107.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---hCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---AGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~~~i  112 (179)
                      ++|+++||||+|+||++++++|+++|++|++++|+++ .            .++..+.+|++|++++++++++   ++++
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   67 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G------------EDLIYVEGDVTREEDVRRAVARAQEEAPL   67 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c------------cceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence            3689999999999999999999999999999999864 1            1246789999999998887764   4789


Q ss_pred             cEEEecCCCCCCCCcccCC----HHHHHHHHHhhhhHHHHHHHHHcHHHHhcc---CCCCcEEEEecccCcc
Q 030328          113 DVLVVNQGVFVPGELEVQS----LDEVRLMIDVNIIGSFHMIKAALPLIKKRQ---NGGPASIALMSSQAGQ  177 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~~~~~iv~iss~~g~  177 (179)
                      |++|||||.....++.+.+    .++|++.+++|+.+++.+++.+.|.|.+++   .+..++||++||.++.
T Consensus        68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~  139 (242)
T 1uay_A           68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF  139 (242)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH
T ss_pred             eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc
Confidence            9999999987766555443    459999999999999999999999998764   2334599999998764

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.88  E-value=3.9e-22  Score=179.40  Aligned_cols=145  Identities=23%  Similarity=0.309  Sum_probs=121.6

Q ss_pred             CcCcCCcEEEEEcCCCc-hHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhc---CceEEEEEeeCCCHHHHHHHH
Q 030328           32 RIPIKDRHVFITGGSSG-IGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLAT---GIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~-iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      .+.+++|++|||||++| ||+++|++|+++|++|+++ +|+.+..++..+++....   +.++.++.+|++|.+++++++
T Consensus       670 ~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv  749 (1887)
T 2uv8_A          670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI  749 (1887)
T ss_dssp             CBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence            34578999999999998 9999999999999999998 577777766666654322   567889999999999998887


Q ss_pred             Hh---------hC-CCcEEEecCCCCCCC-CcccCC--HHHHHHHHHhhhhHHHHHHHHH--cHHHHhccCCCCcEEEEe
Q 030328          107 DE---------AG-PVDVLVVNQGVFVPG-ELEVQS--LDEVRLMIDVNIIGSFHMIKAA--LPLIKKRQNGGPASIALM  171 (179)
Q Consensus       107 ~~---------~~-~id~li~~ag~~~~~-~~~~~~--~~~~~~~~~~n~~~~~~l~~~~--~~~~~~~~~~~~~~iv~i  171 (179)
                      +.         +| ++|+||||||..... ++.+.+  .++|++++++|+.+++.+++.+  .|.|.+++.   ++||++
T Consensus       750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~---G~IVnI  826 (1887)
T 2uv8_A          750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPA---QVILPM  826 (1887)
T ss_dssp             HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCE---EEEEEE
T ss_pred             HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCC---CEEEEE
Confidence            64         34 799999999988777 788888  8999999999999999999988  787765432   499999


Q ss_pred             cccCcccC
Q 030328          172 SSQAGQVG  179 (179)
Q Consensus       172 ss~~g~~g  179 (179)
                      ||.++..|
T Consensus       827 SS~ag~~g  834 (1887)
T 2uv8_A          827 SPNHGTFG  834 (1887)
T ss_dssp             CSCTTCSS
T ss_pred             cChHhccC
Confidence            99988754

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-22  Score=178.23  Aligned_cols=148  Identities=23%  Similarity=0.306  Sum_probs=121.9

Q ss_pred             CCCCcCcCCcEEEEEcCCCc-hHHHHHHHHHHcCCeEEEE-ecChhHHHHHHHHHHhhc---CceEEEEEeeCCCHHHHH
Q 030328           29 KPVRIPIKDRHVFITGGSSG-IGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLAT---GIEVATYSADVRDFDAVK  103 (179)
Q Consensus        29 ~~~~~~~~~k~vlItGa~~~-iG~~la~~l~~~g~~v~~~-~r~~~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~v~  103 (179)
                      .++.+++++|++|||||++| ||+++|++|+++|++|+++ +|+.+..++..+++....   +.++..+.+|++|.++++
T Consensus       468 a~~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVe  547 (1688)
T 2pff_A          468 XXXXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVE  547 (1688)
T ss_dssp             SSSCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHH
T ss_pred             cccccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHH
Confidence            34445678999999999998 9999999999999999998 566666655555553322   567889999999999998


Q ss_pred             HHHHh---------hC-CCcEEEecCCCCCCC-CcccCC--HHHHHHHHHhhhhHHHHHHHHH--cHHHHhccCCCCcEE
Q 030328          104 TALDE---------AG-PVDVLVVNQGVFVPG-ELEVQS--LDEVRLMIDVNIIGSFHMIKAA--LPLIKKRQNGGPASI  168 (179)
Q Consensus       104 ~~~~~---------~~-~id~li~~ag~~~~~-~~~~~~--~~~~~~~~~~n~~~~~~l~~~~--~~~~~~~~~~~~~~i  168 (179)
                      +++++         ++ ++|+||||||..... ++.+.+  +++|++++++|+.+++.+++.+  .|.|++++.   ++|
T Consensus       548 aLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krgg---GrI  624 (1688)
T 2pff_A          548 ALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPA---QVI  624 (1688)
T ss_dssp             HHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCE---EEC
T ss_pred             HHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCC---CEE
Confidence            88764         44 799999999988776 788888  8999999999999999999988  777765543   499


Q ss_pred             EEecccCcccC
Q 030328          169 ALMSSQAGQVG  179 (179)
Q Consensus       169 v~iss~~g~~g  179 (179)
                      |++||.+|..|
T Consensus       625 VnISSiAG~~G  635 (1688)
T 2pff_A          625 LPMSPNHGTFG  635 (1688)
T ss_dssp             CCCCSCTTTSS
T ss_pred             EEEEChHhccC
Confidence            99999988654

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.88  E-value=8.2e-22  Score=177.04  Aligned_cols=144  Identities=19%  Similarity=0.286  Sum_probs=119.5

Q ss_pred             cCcCCcEEEEEcCCCc-hHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHH
Q 030328           33 IPIKDRHVFITGGSSG-IGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~-iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      +++++|++|||||++| ||+++|++|+++|++|++++ |+.+..++..+++...   .+.++.++.+|++|.++++++++
T Consensus       648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~  727 (1878)
T 2uv9_A          648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVN  727 (1878)
T ss_dssp             BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHH
Confidence            4578999999999999 99999999999999999985 6566665555555332   25678999999999999988876


Q ss_pred             h-------hC-CCcEEEecCCCCCCC-CcccCC--HHHHHHHHHhhhhHHHHHHHH--HcHHHHhccCCCCcEEEEeccc
Q 030328          108 E-------AG-PVDVLVVNQGVFVPG-ELEVQS--LDEVRLMIDVNIIGSFHMIKA--ALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       108 ~-------~~-~id~li~~ag~~~~~-~~~~~~--~~~~~~~~~~n~~~~~~l~~~--~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      .       +| ++|+||||||..... ++.+.+  +++|++++++|+.+++.+++.  ++|.|.+++   .++||++||.
T Consensus       728 ~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~---~G~IVnISS~  804 (1878)
T 2uv9_A          728 YIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRP---AQVILPLSPN  804 (1878)
T ss_dssp             HHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCC---EEECCEECSC
T ss_pred             HHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCC---CCEEEEEcch
Confidence            4       45 799999999988776 788888  899999999999999999877  667775543   2499999999


Q ss_pred             CcccC
Q 030328          175 AGQVG  179 (179)
Q Consensus       175 ~g~~g  179 (179)
                      +|..|
T Consensus       805 ag~~g  809 (1878)
T 2uv9_A          805 HGTFG  809 (1878)
T ss_dssp             SSSSS
T ss_pred             hhccC
Confidence            88764

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.87  E-value=6e-22  Score=151.87  Aligned_cols=142  Identities=19%  Similarity=0.189  Sum_probs=102.4

Q ss_pred             CcCcCCcEEEEEcCC--CchHHHHHHHHHHcCCeEEEEecChhHHH-------HHHHHHHhh-cCc---eEEEEEee---
Q 030328           32 RIPIKDRHVFITGGS--SGIGLALAHQAAKEGARVSILARSGEKLE-------EAKQSIQLA-TGI---EVATYSAD---   95 (179)
Q Consensus        32 ~~~~~~k~vlItGa~--~~iG~~la~~l~~~g~~v~~~~r~~~~~~-------~~~~~~~~~-~~~---~v~~~~~D---   95 (179)
                      .+++++|+++||||+  +|||+++|++|+++|++|++++|++....       +..++.... .+.   ....+.+|   
T Consensus         3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
T 1d7o_A            3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF   82 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred             ccccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceec
Confidence            345789999999999  99999999999999999999997642110       000011100 011   12333443   


Q ss_pred             -----CC----C--------HHHHHHH----HHhhCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328           96 -----VR----D--------FDAVKTA----LDEAGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus        96 -----~~----~--------~~~v~~~----~~~~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                           ++    |        +++++++    .++++++|+||||||...  ..++.+.+.++|++.+++|+.+++.++++
T Consensus        83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~  162 (297)
T 1d7o_A           83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence                 22    1        2344444    445689999999999754  46778889999999999999999999999


Q ss_pred             HcHHHHhccCCCCcEEEEecccCccc
Q 030328          153 ALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       153 ~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|.|++.     ++||++||.++..
T Consensus       163 ~~~~m~~~-----g~iv~isS~~~~~  183 (297)
T 1d7o_A          163 FLPIMNPG-----GASISLTYIASER  183 (297)
T ss_dssp             HGGGEEEE-----EEEEEEECGGGTS
T ss_pred             HHHHhccC-----ceEEEEecccccc
Confidence            99999642     3999999987754

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.87  E-value=3.1e-22  Score=154.95  Aligned_cols=142  Identities=19%  Similarity=0.204  Sum_probs=98.6

Q ss_pred             CcCcCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecCh-----------hHHH-----------HHHHHHHhhcCc
Q 030328           32 RIPIKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSG-----------EKLE-----------EAKQSIQLATGI   87 (179)
Q Consensus        32 ~~~~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~-----------~~~~-----------~~~~~~~~~~~~   87 (179)
                      .+++++|+++||||  ++|||+++|++|+++|++|++++|++           +.++           +..+++....+.
T Consensus         4 ~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (319)
T 2ptg_A            4 PVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVD   83 (319)
T ss_dssp             CCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC-------------------------------
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccc
Confidence            34578999999999  89999999999999999999998753           1111           111222111000


Q ss_pred             --eEEEEEee------------CCC--------HHHHHHH----HHhhCCCcEEEecCCCCC--CCCcccCCHHHHHHHH
Q 030328           88 --EVATYSAD------------VRD--------FDAVKTA----LDEAGPVDVLVVNQGVFV--PGELEVQSLDEVRLMI  139 (179)
Q Consensus        88 --~v~~~~~D------------~~~--------~~~v~~~----~~~~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~  139 (179)
                        ....+.+|            +++        .++++++    .++++++|+||||||...  ..++.+.+.++|++.+
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~  163 (319)
T 2ptg_A           84 LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAV  163 (319)
T ss_dssp             -CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHH
T ss_pred             ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHH
Confidence              02334443            222        2244444    445689999999999763  4677889999999999


Q ss_pred             HhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          140 DVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       140 ~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|+.+++++++.++|.|++.     ++||++||.++..
T Consensus       164 ~vN~~g~~~l~~~~~~~m~~~-----g~Iv~isS~~~~~  197 (319)
T 2ptg_A          164 SSSSYSFVSLLQHFLPLMKEG-----GSALALSYIASEK  197 (319)
T ss_dssp             HHHTHHHHHHHHHHGGGEEEE-----EEEEEEEECC---
T ss_pred             hHhhHHHHHHHHHHHHHHhcC-----ceEEEEecccccc
Confidence            999999999999999999652     3999999988754

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.87  E-value=5.7e-22  Score=153.27  Aligned_cols=142  Identities=20%  Similarity=0.228  Sum_probs=102.8

Q ss_pred             CcCcCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecChhH------HH-HHHHHHHhh-cCce---EEEEEee---
Q 030328           32 RIPIKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSGEK------LE-EAKQSIQLA-TGIE---VATYSAD---   95 (179)
Q Consensus        32 ~~~~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~~~------~~-~~~~~~~~~-~~~~---v~~~~~D---   95 (179)
                      .+++++|+++||||  ++|||+++|++|+++|++|++++|++..      .+ ...++.... .+..   ...+.+|   
T Consensus         4 ~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (315)
T 2o2s_A            4 PIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAF   83 (315)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTC
T ss_pred             cccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccc
Confidence            34578999999999  8999999999999999999999986421      00 000111110 1110   2333443   


Q ss_pred             ---------CCC--------HHHHHHH----HHhhCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328           96 ---------VRD--------FDAVKTA----LDEAGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus        96 ---------~~~--------~~~v~~~----~~~~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                               ++|        .++++++    .++++++|+||||||...  ..++.+.++++|++.+++|+.+++.++++
T Consensus        84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~  163 (315)
T 2o2s_A           84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQH  163 (315)
T ss_dssp             SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHH
Confidence                     232        2344444    445689999999999763  46778899999999999999999999999


Q ss_pred             HcHHHHhccCCCCcEEEEecccCccc
Q 030328          153 ALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       153 ~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ++|.|++.     ++||++||.++..
T Consensus       164 ~~~~m~~~-----g~Iv~isS~~~~~  184 (315)
T 2o2s_A          164 FGPIMNEG-----GSAVTLSYLAAER  184 (315)
T ss_dssp             HSTTEEEE-----EEEEEEEEGGGTS
T ss_pred             HHHHHhcC-----CEEEEEecccccc
Confidence            99999652     3999999988754

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.87  E-value=1.4e-21  Score=159.10  Aligned_cols=135  Identities=24%  Similarity=0.390  Sum_probs=114.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh---
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA---  109 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~---  109 (179)
                      +|++|||||+||||+++|++|+++|+ +|++++|+..   ..++..+++.. .+.++.++.+|++|.+++++++++.   
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~-~g~~v~~~~~Dvtd~~~v~~~~~~i~~~  317 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQ-LGVRVTIAACDAADREALAALLAELPED  317 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHh-cCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            59999999999999999999999999 6888898753   34555555543 4778999999999999999998764   


Q ss_pred             CCCcEEEecCCCC-CCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVF-VPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|++|||||.. ...++.+.++++|++++++|+.|++++.+.+.+.    .   .++||++||.++..|
T Consensus       318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~----~---~~~iV~~SS~a~~~g  381 (496)
T 3mje_A          318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL----D---LDAFVLFSSGAAVWG  381 (496)
T ss_dssp             SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS----C---CSEEEEEEEHHHHTT
T ss_pred             CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc----C---CCEEEEEeChHhcCC
Confidence            5799999999998 6778889999999999999999999999987553    2   249999999987654

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.87  E-value=8e-22  Score=168.59  Aligned_cols=134  Identities=23%  Similarity=0.419  Sum_probs=117.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH-HcCCe-EEEEecCh---hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-
Q 030328           36 KDRHVFITGGSSGIGLALAHQAA-KEGAR-VSILARSG---EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~-~~g~~-v~~~~r~~---~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-  109 (179)
                      .+|+++|||+++|||+++|++|+ ++|++ |++++|+.   +..++..+++.. .+.++..+.+|++|.+++++++++. 
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-~G~~v~~~~~Dvsd~~~v~~~~~~~~  607 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTA-YGAEVSLQACDVADRETLAKVLASIP  607 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHh-cCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            58999999999999999999999 79995 89999984   445666666643 4788999999999999999998764 


Q ss_pred             --CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 --GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 --~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        .++|++|||||...+.++.+++.++|++.+++|+.|++++++.+.|.|         +||++||.+|..|
T Consensus       608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l---------~iV~~SS~ag~~g  670 (795)
T 3slk_A          608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV---------ALVLFSSVSGVLG  670 (795)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS---------EEEEEEETHHHHT
T ss_pred             HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC---------EEEEEccHHhcCC
Confidence              379999999999999999999999999999999999999999987655         7999999988654

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.87  E-value=5.4e-22  Score=144.21  Aligned_cols=125  Identities=24%  Similarity=0.324  Sum_probs=104.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      |+++||||+|+||++++++|+++  +|++++|++++.++..+++.    .  ..+.+|++|++++++++++++++|++||
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~----~--~~~~~D~~~~~~~~~~~~~~~~id~vi~   72 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG----A--RALPADLADELEAKALLEEAGPLDLLVH   72 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT----C--EECCCCTTSHHHHHHHHHHHCSEEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc----C--cEEEeeCCCHHHHHHHHHhcCCCCEEEE
Confidence            57999999999999999999998  99999999887766655442    1  6788999999999999887778999999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |||.....++.+.+.++|++.+++|+.+++.+++.+    .+.+   .++||++||.++.
T Consensus        73 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~iv~~sS~~~~  125 (207)
T 2yut_A           73 AVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQK---GARAVFFGAYPRY  125 (207)
T ss_dssp             CCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEE---EEEEEEECCCHHH
T ss_pred             CCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcC---CcEEEEEcChhhc
Confidence            999887777778889999999999999999999987    2222   3499999998654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.87  E-value=2.3e-22  Score=150.94  Aligned_cols=116  Identities=22%  Similarity=0.290  Sum_probs=99.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id~li  116 (179)
                      |+++||||++|||++++++|+++|++|++++|++++.+.           .   +.+|+++.++++++++++ +++|+||
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-----------~---~~~Dl~~~~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-----------D---LSTAEGRKQAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-----------C---TTSHHHHHHHHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----------c---cccCCCCHHHHHHHHHHhCCCCCEEE
Confidence            689999999999999999999999999999998754221           1   568999999999999887 8999999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ||||.....       +.|++.+++|+.+++.+++.++|.|++++.+   +||++||.++.
T Consensus        68 ~~Ag~~~~~-------~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g---~iv~isS~~~~  118 (257)
T 1fjh_A           68 LCAGLGPQT-------KVLGNVVSVNYFGATELMDAFLPALKKGHQP---AAVVISSVASA  118 (257)
T ss_dssp             ECCCCCTTC-------SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC---EEEEECCGGGG
T ss_pred             ECCCCCCCc-------ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCc---EEEEECChhhh
Confidence            999975411       2288899999999999999999999876543   99999998875

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.85  E-value=6e-21  Score=152.10  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=109.1

Q ss_pred             cCCcEEEEEcCCCchHHH--HHHHHHHcCCeEEEEecChhH------------HHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           35 IKDRHVFITGGSSGIGLA--LAHQAAKEGARVSILARSGEK------------LEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~--la~~l~~~g~~v~~~~r~~~~------------~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      ..+|++|||||++|||++  +++.|+++|++|++++|+.+.            .+...+ .....+.++..+.+|+++.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKE-FAKKKGLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHH-HHHHTTCCEEEEESCTTCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHH-HHHHcCCcEEEEEeeCCCHH
Confidence            579999999999999999  999999999999999987543            222222 22334677889999999999


Q ss_pred             HHHHHHHh----hCCCcEEEecCCCC-------------CCCCc---------------------ccCCHHHHHHHHHhh
Q 030328          101 AVKTALDE----AGPVDVLVVNQGVF-------------VPGEL---------------------EVQSLDEVRLMIDVN  142 (179)
Q Consensus       101 ~v~~~~~~----~~~id~li~~ag~~-------------~~~~~---------------------~~~~~~~~~~~~~~n  142 (179)
                      ++++++++    +|++|+||||||..             ...++                     .+.++++|+.++++|
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn  216 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM  216 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence            98887654    58999999999974             22333                     356899999999999


Q ss_pred             hhHHH-HHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          143 IIGSF-HMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       143 ~~~~~-~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ..+.+ .+++++.+.+...+.   ++||++||+++..
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~g---g~IV~iSSi~~~~  250 (418)
T 4eue_A          217 GGEDWQEWCEELLYEDCFSDK---ATTIAYSYIGSPR  250 (418)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEE---EEEEEEECCCCGG
T ss_pred             hHHHHHHHHHHHHHHhhhcCC---cEEEEEeCchhcC
Confidence            99988 777777664433332   4999999998764

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.85  E-value=4e-20  Score=151.26  Aligned_cols=136  Identities=26%  Similarity=0.378  Sum_probs=115.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .+|++|||||+||||++++++|+++|+ +|++++|+..   ..++..+++.. .+.++.++.+|++|.+++++++++ ++
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~-~g~~v~~~~~Dvtd~~~v~~~~~~-~~  335 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRG-HGCEVVHAACDVAERDALAALVTA-YP  335 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHT-TTCEEEEEECCSSCHHHHHHHHHH-SC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHh-cCCEEEEEEeCCCCHHHHHHHHhc-CC
Confidence            579999999999999999999999999 5899999874   34555555543 367899999999999999999987 78


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|+||||||......+.+.+.++++.++++|+.|++++.+.+.+. .     ...+||++||.++..|
T Consensus       336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~-----~~~~~V~~SS~a~~~g  397 (511)
T 2z5l_A          336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADI-K-----GLDAFVLFSSVTGTWG  397 (511)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC-T-----TCCCEEEEEEGGGTTC
T ss_pred             CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc-c-----CCCEEEEEeCHHhcCC
Confidence            999999999988888888999999999999999999999876432 0     2348999999987654

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.85  E-value=2.4e-20  Score=151.92  Aligned_cols=136  Identities=21%  Similarity=0.333  Sum_probs=115.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--  109 (179)
                      .++++|||||+||||++++++|+++|++ |++++|+.+   ..++..+++.. .+.++.++.+|++|.+++++++++.  
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~-~g~~v~~~~~Dv~d~~~v~~~~~~i~~  303 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA-LGARTTVAACDVTDRESVRELLGGIGD  303 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHh-cCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            5899999999999999999999999996 999999875   34455555543 3678899999999999999988764  


Q ss_pred             -CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 -GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 -~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       +++|++|||||......+.+.+.++++.++++|+.|++++.+.+.+    .   +..+||++||.++..|
T Consensus       304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~----~---~~~~~V~~SS~a~~~g  367 (486)
T 2fr1_A          304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE----L---DLTAFVLFSSFASAFG  367 (486)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----S---CCSEEEEEEEHHHHTC
T ss_pred             cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCc----C---CCCEEEEEcChHhcCC
Confidence             6789999999998888888899999999999999999999998743    2   2359999999877553

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.82  E-value=3.7e-20  Score=139.89  Aligned_cols=114  Identities=19%  Similarity=0.242  Sum_probs=95.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++|+++||||+|+||++++++|+++|++|++++|++.+.+          +..+..+.+|++|.++++++++   ++|+|
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~---~~D~v   68 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----------GPNEECVQCDLADANAVNAMVA---GCDGI   68 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----------CTTEEEEECCTTCHHHHHHHHT---TCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----------CCCCEEEEcCCCCHHHHHHHHc---CCCEE
Confidence            4689999999999999999999999999999999875322          4568889999999999999887   68999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |||||..        +.+.|+..+++|+.+++++++++.+    .+   .++||++||..+.
T Consensus        69 i~~Ag~~--------~~~~~~~~~~~N~~g~~~l~~a~~~----~~---~~~iv~~SS~~~~  115 (267)
T 3rft_A           69 VHLGGIS--------VEKPFEQILQGNIIGLYNLYEAARA----HG---QPRIVFASSNHTI  115 (267)
T ss_dssp             EECCSCC--------SCCCHHHHHHHHTHHHHHHHHHHHH----TT---CCEEEEEEEGGGG
T ss_pred             EECCCCc--------CcCCHHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEEcchHHh
Confidence            9999973        2345778899999999999998832    22   3499999998654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.82  E-value=3e-20  Score=138.77  Aligned_cols=116  Identities=28%  Similarity=0.351  Sum_probs=97.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id~li  116 (179)
                      |+++||||+|+||++++++|+++|++|++++|++++.+.              .+.+|+++.++++++++++ +++|++|
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------------~~~~D~~~~~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA--------------DLSTPGGRETAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------------CTTSHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc--------------cccCCcccHHHHHHHHHHcCCCccEEE
Confidence            689999999999999999999999999999998653210              1568999999999998877 6899999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ||||....       .+.++..+++|+.+++.+++++.|.|++.+.   .+||++||.++.
T Consensus        68 ~~Ag~~~~-------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~---~~iv~~sS~~~~  118 (255)
T 2dkn_A           68 CCAGVGVT-------AANSGLVVAVNYFGVSALLDGLAEALSRGQQ---PAAVIVGSIAAT  118 (255)
T ss_dssp             ECCCCCTT-------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSS---CEEEEECCGGGG
T ss_pred             ECCCCCCc-------chhHHHHHHHHhHHHHHHHHHHHHHhhhcCC---ceEEEEeccccc
Confidence            99997542       1237889999999999999999999987643   399999998765

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.82  E-value=3.9e-20  Score=172.45  Aligned_cols=138  Identities=21%  Similarity=0.281  Sum_probs=102.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHH---HHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKL---EEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~---~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+|+++||||++|||+++|++|+++|++ |++++|+.++.   ++..+++.. .+.++..+.+|++|.+++++++++   
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRR-QGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHH-TTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHh-CCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            6899999999999999999999999998 78888886433   333333332 367888999999999999888765   


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      .+++|++|||||.....++.+++.++|++++++|+.|++++.+.+.+.|.+.     ++||++||.+|..|
T Consensus      1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~-----g~iV~iSS~ag~~g 2027 (2512)
T 2vz8_A         1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL-----DYFVIFSSVSCGRG 2027 (2512)
T ss_dssp             HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTC-----CEEEEECCHHHHTT
T ss_pred             cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CEEEEecchhhcCC
Confidence            5799999999999888888999999999999999999999999998887543     39999999988654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.78  E-value=9.6e-19  Score=129.60  Aligned_cols=120  Identities=15%  Similarity=0.187  Sum_probs=91.0

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceE-EEEEeeCCCHHHHHHHHHhh
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV-ATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ....+++|+++||||+|+||++++++|+++|++|++++|++++.++...       ..+ ..+.+|++  +   .+.+.+
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-------~~~~~~~~~Dl~--~---~~~~~~   82 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-------RGASDIVVANLE--E---DFSHAF   82 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-------TTCSEEEECCTT--S---CCGGGG
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-------CCCceEEEcccH--H---HHHHHH
Confidence            3445789999999999999999999999999999999999887654332       245 77899998  2   333445


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||....        ++++..+++|+.++..+++++..    .+   ..+||++||..+.
T Consensus        83 ~~~D~vi~~ag~~~~--------~~~~~~~~~n~~~~~~l~~a~~~----~~---~~~iv~~SS~~~~  135 (236)
T 3e8x_A           83 ASIDAVVFAAGSGPH--------TGADKTILIDLWGAIKTIQEAEK----RG---IKRFIMVSSVGTV  135 (236)
T ss_dssp             TTCSEEEECCCCCTT--------SCHHHHHHTTTHHHHHHHHHHHH----HT---CCEEEEECCTTCS
T ss_pred             cCCCEEEECCCCCCC--------CCccccchhhHHHHHHHHHHHHH----cC---CCEEEEEecCCCC
Confidence            689999999996442        45778899999999999998732    22   2399999997654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.77  E-value=3.8e-18  Score=132.31  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=101.3

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEE-EeeCCCHHHHHHHHHhhC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATY-SADVRDFDAVKTALDEAG  110 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~-~~D~~~~~~v~~~~~~~~  110 (179)
                      ...+++|++|||||+|+||++++++|+++|++|++++|+.+..+...+.+....+.++.++ .+|++|.++++++++   
T Consensus         6 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---   82 (342)
T 1y1p_A            6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---   82 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT---
T ss_pred             ccCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc---
Confidence            3346789999999999999999999999999999999998776655554433233567777 799999888777665   


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|+|||+||.....       ++++..+++|+.++..+++++.+.   .   +..+||++||.+..
T Consensus        83 ~~d~vih~A~~~~~~-------~~~~~~~~~n~~g~~~ll~~~~~~---~---~~~~iv~~SS~~~~  136 (342)
T 1y1p_A           83 GAAGVAHIASVVSFS-------NKYDEVVTPAIGGTLNALRAAAAT---P---SVKRFVLTSSTVSA  136 (342)
T ss_dssp             TCSEEEECCCCCSCC-------SCHHHHHHHHHHHHHHHHHHHHTC---T---TCCEEEEECCGGGT
T ss_pred             CCCEEEEeCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHhC---C---CCcEEEEeccHHHh
Confidence            689999999975432       235668999999999999987541   1   23499999997643

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.76  E-value=3.3e-18  Score=132.85  Aligned_cols=129  Identities=22%  Similarity=0.233  Sum_probs=101.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .++++|||||+|+||++++++|+++|++|++++|+.+..++..+++....+..+.++.+|++|.+++++++++. ++|++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAH-PITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHS-CCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhcc-CCcEE
Confidence            56899999999999999999999999999999998766555555554444567888999999999999999874 69999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ||+||......    ..+.....+++|+.++..+++++    ++.+   ..+||++||.+.
T Consensus        83 ih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~iv~~SS~~~  132 (341)
T 3enk_A           83 IHFAALKAVGE----SVAKPIEYYRNNLDSLLSLLRVM----RERA---VKRIVFSSSATV  132 (341)
T ss_dssp             EECCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHH----HHTT---CCEEEEEEEGGG
T ss_pred             EECccccccCc----cccChHHHHHHHHHHHHHHHHHH----HhCC---CCEEEEEecceE
Confidence            99999754321    22334567899999999887764    3333   239999999653

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.76  E-value=3.1e-18  Score=132.80  Aligned_cols=127  Identities=15%  Similarity=0.151  Sum_probs=98.7

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +....++++++|||||+|+||++++++|+++|++|++++|+.+...+..+++     ..+..+.+|++|.+++++++++.
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l-----~~v~~~~~Dl~d~~~~~~~~~~~   87 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV-----AGLSVIEGSVTDAGLLERAFDSF   87 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC-----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc-----CCceEEEeeCCCHHHHHHHHhhc
Confidence            3445678999999999999999999999999999999999754322111111     35778899999999999998876


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                       ++|+|||+||.....     +.++++  +++|+.++..+++++..    .+   ..+||++||.+.
T Consensus        88 -~~D~vih~A~~~~~~-----~~~~~~--~~~N~~~~~~l~~a~~~----~~---~~~iV~~SS~~~  139 (330)
T 2pzm_A           88 -KPTHVVHSAAAYKDP-----DDWAED--AATNVQGSINVAKAASK----AG---VKRLLNFQTALC  139 (330)
T ss_dssp             -CCSEEEECCCCCSCT-----TCHHHH--HHHHTHHHHHHHHHHHH----HT---CSEEEEEEEGGG
T ss_pred             -CCCEEEECCccCCCc-----cccChh--HHHHHHHHHHHHHHHHH----cC---CCEEEEecCHHH
Confidence             699999999975432     345555  99999999999998853    22   239999999754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.76  E-value=1.8e-17  Score=129.50  Aligned_cols=130  Identities=19%  Similarity=0.306  Sum_probs=103.2

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHc-CC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKE-GA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ....+++|++|||||+|+||++++++|+++ |+ +|++++|++++.++..+++.   ...+.++.+|++|.++++++++ 
T Consensus        15 ~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~-   90 (344)
T 2gn4_A           15 HQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN---DPRMRFFIGDVRDLERLNYALE-   90 (344)
T ss_dssp             -CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC---CTTEEEEECCTTCHHHHHHHTT-
T ss_pred             HHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHh-
Confidence            334468999999999999999999999999 98 99999999887766655442   3468889999999999888876 


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                        ++|+|||+||....+ .   ..+.....+++|+.++.++++++.+.    +   ..+||++||..+.
T Consensus        91 --~~D~Vih~Aa~~~~~-~---~~~~~~~~~~~Nv~gt~~l~~aa~~~----~---v~~~V~~SS~~~~  146 (344)
T 2gn4_A           91 --GVDICIHAAALKHVP-I---AEYNPLECIKTNIMGASNVINACLKN----A---ISQVIALSTDKAA  146 (344)
T ss_dssp             --TCSEEEECCCCCCHH-H---HHHSHHHHHHHHHHHHHHHHHHHHHT----T---CSEEEEECCGGGS
T ss_pred             --cCCEEEECCCCCCCC-c---hhcCHHHHHHHHHHHHHHHHHHHHhC----C---CCEEEEecCCccC
Confidence              689999999975421 1   12335678999999999999998653    1   3499999997653

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.75  E-value=9.2e-18  Score=157.17  Aligned_cols=142  Identities=14%  Similarity=0.181  Sum_probs=106.5

Q ss_pred             CcCCcEEEEEcCCCc-hHHHHHHHHHHcCCeEEEEecChhH-----HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH
Q 030328           34 PIKDRHVFITGGSSG-IGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        34 ~~~~k~vlItGa~~~-iG~~la~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      .+++|++|||||++| ||+++|+.|+++|++|++++|+.+.     +++..+++.. .+.++..+.+|+++.++++++++
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~-~G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHAR-FDATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCC-TTCEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhh-cCCeEEEEEecCCCHHHHHHHHH
Confidence            378999999999999 9999999999999999999998765     4444444432 35678889999999999988765


Q ss_pred             --------hhCCCcEEEecCCC----CCC-CCcccCCHHH----HHHHHHhhhhHHHHHHHHHcHHHHhccCCCCc-EEE
Q 030328          108 --------EAGPVDVLVVNQGV----FVP-GELEVQSLDE----VRLMIDVNIIGSFHMIKAALPLIKKRQNGGPA-SIA  169 (179)
Q Consensus       108 --------~~~~id~li~~ag~----~~~-~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~-~iv  169 (179)
                              .+|++|+||||||.    ... ....+.+.++    ++..+++|+.+++.+++.+.|.|.++..+... .++
T Consensus      2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D         2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp             HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence                    35789999999997    111 1222223333    44559999999999999999999877643332 344


Q ss_pred             EecccCc
Q 030328          170 LMSSQAG  176 (179)
Q Consensus       170 ~iss~~g  176 (179)
                      +.|+..+
T Consensus      2292 ~~ss~~g 2298 (3089)
T 3zen_D         2292 PGSPNRG 2298 (3089)
T ss_dssp             EECSSTT
T ss_pred             ECCcccc
Confidence            4554443

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.73  E-value=8.7e-17  Score=127.50  Aligned_cols=134  Identities=16%  Similarity=0.198  Sum_probs=99.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH----------------HHHHHHhhcCceEEEEEeeCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE----------------AKQSIQLATGIEVATYSADVR   97 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~----------------~~~~~~~~~~~~v~~~~~D~~   97 (179)
                      .-+++++|||||+|.||++++++|+++|++|++++|+.+....                ..++.....+.++.++.+|++
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~   87 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC   87 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence            3478899999999999999999999999999999987543211                111111122456788899999


Q ss_pred             CHHHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328           98 DFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus        98 ~~~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +.++++++++.. ++|+|||+||...... ...+++.+...+++|+.++..+++++.+.    +.  ..+||++||.+
T Consensus        88 d~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~~--~~~~V~~SS~~  157 (404)
T 1i24_A           88 DFEFLAESFKSF-EPDSVVHFGEQRSAPY-SMIDRSRAVYTQHNNVIGTLNVLFAIKEF----GE--ECHLVKLGTMG  157 (404)
T ss_dssp             SHHHHHHHHHHH-CCSEEEECCSCCCHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHH----CT--TCEEEEECCGG
T ss_pred             CHHHHHHHHhcc-CCCEEEECCCCCCccc-hhhCccchhhhHHHHHHHHHHHHHHHHHh----CC--CcEEEEeCcHH
Confidence            999999998866 5999999999654321 12356777889999999999999987542    11  13899999974

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.73  E-value=2.9e-17  Score=127.85  Aligned_cols=128  Identities=20%  Similarity=0.246  Sum_probs=96.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH------HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK------LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~------~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      +|+++||||+|+||++++++|+++|++|++++|+.+.      .++..+++....+.++.++.+|++|.+++++++++. 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY-   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc-
Confidence            5789999999999999999999999999999885432      112222332222456788899999999999998865 


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++|++||+||.....    .+.++++..+++|+.++..+++++    .+.+   ..+||++||.+.
T Consensus        81 ~~d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~iv~~SS~~~  135 (348)
T 1ek6_A           81 SFMAVIHFAGLKAVG----ESVQKPLDYYRVNLTGTIQLLEIM----KAHG---VKNLVFSSSATV  135 (348)
T ss_dssp             CEEEEEECCSCCCHH----HHHHCHHHHHHHHHHHHHHHHHHH----HHTT---CCEEEEEEEGGG
T ss_pred             CCCEEEECCCCcCcc----chhhchHHHHHHHHHHHHHHHHHH----HHhC---CCEEEEECcHHH
Confidence            699999999964321    133556788999999999998865    2222   348999999754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.73  E-value=2.2e-17  Score=129.13  Aligned_cols=128  Identities=16%  Similarity=0.171  Sum_probs=101.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +++++++||||+|+||++++++|+++|++|++++|+++..+...+.+.  .+.++.++.+|+++.+++.++++.. ++|+
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~   83 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR--VADGMQSEIGDIRDQNKLLESIREF-QPEI   83 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT--TTTTSEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc--cCCceEEEEccccCHHHHHHHHHhc-CCCE
Confidence            467899999999999999999999999999999998765433333322  1345778899999999999998876 6999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |||+||...    .+.+.++++..+++|+.++..+++++.+.    +  ...+||++||.+
T Consensus        84 vih~A~~~~----~~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~~v~~SS~~  134 (357)
T 1rkx_A           84 VFHMAAQPL----VRLSYSEPVETYSTNVMGTVYLLEAIRHV----G--GVKAVVNITSDK  134 (357)
T ss_dssp             EEECCSCCC----HHHHHHCHHHHHHHHTHHHHHHHHHHHHH----C--CCCEEEEECCGG
T ss_pred             EEECCCCcc----cccchhCHHHHHHHHHHHHHHHHHHHHHh----C--CCCeEEEecCHH
Confidence            999999522    12345667889999999999999988542    1  134999999975

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.73  E-value=7.8e-17  Score=127.57  Aligned_cols=128  Identities=23%  Similarity=0.325  Sum_probs=97.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH-HcCCeEEEEecChhH---------HHHHHHHHHhhcC----ce---EEEEEeeCCCH
Q 030328           37 DRHVFITGGSSGIGLALAHQAA-KEGARVSILARSGEK---------LEEAKQSIQLATG----IE---VATYSADVRDF   99 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~-~~g~~v~~~~r~~~~---------~~~~~~~~~~~~~----~~---v~~~~~D~~~~   99 (179)
                      ++++|||||+|+||++++++|+ ++|++|++++|+.+.         .+...+.+....+    ..   +.++.+|++|.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            4589999999999999999999 999999999987643         3333222222111    13   77899999999


Q ss_pred             HHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       100 ~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +++++++++.+++|+|||+||.....    .+.++++..+++|+.++..+++++.    +.+   ..+||++||.+
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~~~~~----~~~~~~~~~~~~Nv~g~~~ll~a~~----~~~---~~~iv~~SS~~  146 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAFLAVG----ESVRDPLKYYDNNVVGILRLLQAML----LHK---CDKIIFSSSAA  146 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHH----HHHHCHHHHHHHHHHHHHHHHHHHH----HTT---CCEEEEEEEGG
T ss_pred             HHHHHHHHhcCCCCEEEECCCccCcC----cchhhHHHHHHHHhHHHHHHHHHHH----HhC---CCEEEEECCHH
Confidence            99999998776699999999965421    1345677899999999999999753    222   34899999964

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.73  E-value=2.3e-17  Score=127.98  Aligned_cols=127  Identities=16%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH-HHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE-AKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++|+++||||+|+||++++++|+++|++|++++|+++..+. ..+.+.  ...++.++.+|++|.++++++++.. ++|+
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~   78 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELG--IENDVKIIHMDLLEFSNIIRTIEKV-QPDE   78 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTT--CTTTEEECCCCTTCHHHHHHHHHHH-CCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhcc--ccCceeEEECCCCCHHHHHHHHHhc-CCCE
Confidence            57899999999999999999999999999999998754321 111111  1235788899999999999998876 6899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +||+||....    +.+.++++..+++|+.++.++++++.+.    +.  ..+||++||.+
T Consensus        79 vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~~--~~~iv~~SS~~  129 (345)
T 2z1m_A           79 VYNLAAQSFV----GVSFEQPILTAEVDAIGVLRILEALRTV----KP--DTKFYQASTSE  129 (345)
T ss_dssp             EEECCCCCCH----HHHTTSHHHHHHHHTHHHHHHHHHHHHH----CT--TCEEEEEEEGG
T ss_pred             EEECCCCcch----hhhhhCHHHHHHHHHHHHHHHHHHHHHh----CC--CceEEEEechh
Confidence            9999996431    1233557788999999999999988642    11  13999999974

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.73  E-value=1.9e-17  Score=123.11  Aligned_cols=125  Identities=22%  Similarity=0.237  Sum_probs=95.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .++|+++||||+|+||++++++|+++  |++|++++|++++.++.        +..+..+.+|++|.++++++++   ++
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~---~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--------GGEADVFIGDITDADSINPAFQ---GI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--------TCCTTEEECCTTSHHHHHHHHT---TC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc--------CCCeeEEEecCCCHHHHHHHHc---CC
Confidence            35789999999999999999999999  89999999987654322        2345678899999999998886   58


Q ss_pred             cEEEecCCCCCCCCc---------ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          113 DVLVVNQGVFVPGEL---------EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       113 d~li~~ag~~~~~~~---------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |++||+||.......         .+...+.++..+++|+.++..+++++..    .+   ..+||++||.++.
T Consensus        71 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~iv~~SS~~~~  137 (253)
T 1xq6_A           71 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV----AG---VKHIVVVGSMGGT  137 (253)
T ss_dssp             SEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHH----HT---CSEEEEEEETTTT
T ss_pred             CEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHH----cC---CCEEEEEcCccCC
Confidence            999999997542110         1112233456789999999998887633    22   2389999998653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.72  E-value=1.4e-16  Score=116.86  Aligned_cols=106  Identities=9%  Similarity=0.079  Sum_probs=85.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH-HcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAA-KEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~-~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .|+++||||+|+||++++++|+ ++|++|++++|+++ ..++..     ..+..+..+.+|++|.++++++++   ++|+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~D~~d~~~~~~~~~---~~d~   76 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-----IDHERVTVIEGSFQNPGXLEQAVT---NAEV   76 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-----HTSTTEEEEECCTTCHHHHHHHHT---TCSE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-----cCCCceEEEECCCCCHHHHHHHHc---CCCE
Confidence            4789999999999999999999 89999999999977 544332     124568889999999999998886   6899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +|||+|..                   |+.     ++.+++.|++.+.+   +||++||..+.
T Consensus        77 vv~~ag~~-------------------n~~-----~~~~~~~~~~~~~~---~iv~iSs~~~~  112 (221)
T 3r6d_A           77 VFVGAMES-------------------GSD-----MASIVKALSRXNIR---RVIGVSMAGLS  112 (221)
T ss_dssp             EEESCCCC-------------------HHH-----HHHHHHHHHHTTCC---EEEEEEETTTT
T ss_pred             EEEcCCCC-------------------Chh-----HHHHHHHHHhcCCC---eEEEEeeceec
Confidence            99999842                   222     67788888776533   99999998764

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.72  E-value=5.5e-17  Score=127.34  Aligned_cols=131  Identities=18%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH-HHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE-EAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +|+++||||+|+||++++++|+++|++|++++|+.+... +..+++...   .+.++.++.+|++|.++++++++.. ++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~   79 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV-QP   79 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH-CC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc-CC
Confidence            478999999999999999999999999999999865321 111111110   1346788899999999999998876 68


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |++||+||.....    .+.++++..+++|+.++..+++++.+...+ +   ..+||++||.+.
T Consensus        80 d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~---~~~iv~~SS~~v  135 (372)
T 1db3_A           80 DEVYNLGAMSHVA----VSFESPEYTADVDAMGTLRLLEAIRFLGLE-K---KTRFYQASTSEL  135 (372)
T ss_dssp             SEEEECCCCCTTT----TTTSCHHHHHHHHTHHHHHHHHHHHHTTCT-T---TCEEEEEEEGGG
T ss_pred             CEEEECCcccCcc----ccccCHHHHHHHHHHHHHHHHHHHHHhCCC-C---CcEEEEeCChhh
Confidence            9999999975432    233456778999999999999988664322 1   149999999753

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.71  E-value=4.3e-17  Score=126.51  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=93.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..+++++++||||+|+||++++++|+++|++|++++|+.+...+   .+..  -..+.++.+|++|.++++++++.. ++
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~l~~--~~~~~~~~~Dl~d~~~~~~~~~~~-~~   90 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLKD--HPNLTFVEGSIADHALVNQLIGDL-QP   90 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GSCC--CTTEEEEECCTTCHHHHHHHHHHH-CC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh---hHhh--cCCceEEEEeCCCHHHHHHHHhcc-CC
Confidence            34678999999999999999999999999999999997542111   0100  035778899999999999988764 69


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+|||+||.....     +.++++  +++|+.++..+++++.+    .+   ..+||++||.+.
T Consensus        91 D~vih~A~~~~~~-----~~~~~~--~~~N~~~~~~l~~a~~~----~~---~~~iV~~SS~~~  140 (333)
T 2q1w_A           91 DAVVHTAASYKDP-----DDWYND--TLTNCVGGSNVVQAAKK----NN---VGRFVYFQTALC  140 (333)
T ss_dssp             SEEEECCCCCSCT-----TCHHHH--HHHHTHHHHHHHHHHHH----TT---CSEEEEEEEGGG
T ss_pred             cEEEECceecCCC-----ccCChH--HHHHHHHHHHHHHHHHH----hC---CCEEEEECcHHH
Confidence            9999999975432     234444  99999999999998854    22   349999999654

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.71  E-value=2.5e-17  Score=129.17  Aligned_cols=129  Identities=18%  Similarity=0.232  Sum_probs=95.7

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHH--cCCeEEEEecChhHHHHHH------HHHHhhcCceEEEEEeeCCCHHHH
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAK--EGARVSILARSGEKLEEAK------QSIQLATGIEVATYSADVRDFDAV  102 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~--~g~~v~~~~r~~~~~~~~~------~~~~~~~~~~v~~~~~D~~~~~~v  102 (179)
                      +.+.+++|++|||||+|+||++++++|++  +|++|++++|+.+......      .......+..+.++.+|++|.+++
T Consensus         4 ~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~   83 (362)
T 3sxp_A            4 IDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDL   83 (362)
T ss_dssp             SSCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHH
T ss_pred             cchhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHH
Confidence            34567899999999999999999999999  9999999999764211100      001112244578899999999998


Q ss_pred             HHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          103 KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       103 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +++  ...++|+|||+||....      +.++++..+++|+.++..+++++..    . +   .+||++||.+
T Consensus        84 ~~~--~~~~~D~vih~A~~~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~----~-~---~~~V~~SS~~  140 (362)
T 3sxp_A           84 RRL--EKLHFDYLFHQAAVSDT------TMLNQELVMKTNYQAFLNLLEIARS----K-K---AKVIYASSAG  140 (362)
T ss_dssp             HHH--TTSCCSEEEECCCCCGG------GCCCHHHHHHHHTHHHHHHHHHHHH----T-T---CEEEEEEEGG
T ss_pred             HHh--hccCCCEEEECCccCCc------cccCHHHHHHHHHHHHHHHHHHHHH----c-C---CcEEEeCcHH
Confidence            887  33479999999995332      3355678899999999999998722    2 1   2599999953

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.71  E-value=1.3e-16  Score=123.94  Aligned_cols=125  Identities=17%  Similarity=0.216  Sum_probs=97.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      |++|||||+|+||++++++|+++|++|++++|+. +..+...+.+..  ..++.++.+|++|.+++++++++. ++|+||
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~vi   78 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS--LGNFEFVHGDIRNKNDVTRLITKY-MPDSCF   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHH-CCSEEE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc--CCceEEEEcCCCCHHHHHHHHhcc-CCCEEE
Confidence            5799999999999999999999999999999853 222222233322  235778899999999999998865 699999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+||....    +.+.++++..+++|+.++..+++++.+.+.+      ++||++||.+
T Consensus        79 h~A~~~~~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~------~~iv~~SS~~  127 (347)
T 1orr_A           79 HLAGQVAM----TTSIDNPCMDFEINVGGTLNLLEAVRQYNSN------CNIIYSSTNK  127 (347)
T ss_dssp             ECCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT------CEEEEEEEGG
T ss_pred             ECCcccCh----hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC------ceEEEeccHH
Confidence            99996431    1234567789999999999999998765421      2899999975

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.71  E-value=8.3e-18  Score=124.78  Aligned_cols=119  Identities=20%  Similarity=0.238  Sum_probs=93.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +++|+++||||+|+||++++++|+++|+  +|++++|+++..++..       ...+..+.+|++|.++++++++   ++
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~---~~   85 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-------YKNVNQEVVDFEKLDDYASAFQ---GH   85 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-------GGGCEEEECCGGGGGGGGGGGS---SC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-------cCCceEEecCcCCHHHHHHHhc---CC
Confidence            4689999999999999999999999999  9999999876432110       1246778999999888877665   69


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |++|||||....       .+.++..+++|+.++..+++++    .+.+   ..+||++||.++.
T Consensus        86 d~vi~~ag~~~~-------~~~~~~~~~~n~~~~~~~~~~~----~~~~---~~~iv~~SS~~~~  136 (242)
T 2bka_A           86 DVGFCCLGTTRG-------KAGAEGFVRVDRDYVLKSAELA----KAGG---CKHFNLLSSKGAD  136 (242)
T ss_dssp             SEEEECCCCCHH-------HHHHHHHHHHHTHHHHHHHHHH----HHTT---CCEEEEECCTTCC
T ss_pred             CEEEECCCcccc-------cCCcccceeeeHHHHHHHHHHH----HHCC---CCEEEEEccCcCC
Confidence            999999995321       2456788999999999888865    3332   2499999998754

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.70  E-value=4e-17  Score=125.76  Aligned_cols=120  Identities=19%  Similarity=0.179  Sum_probs=94.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ...+++|||||+|+||++++++|+++|++|++++|+++. +.    +      .+.++.+|++|.++++++++.. ++|+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l------~~~~~~~Dl~d~~~~~~~~~~~-~~d~   77 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P------NVEMISLDIMDSQRVKKVISDI-KPDY   77 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T------TEEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c------eeeEEECCCCCHHHHHHHHHhc-CCCE
Confidence            457899999999999999999999999999999998754 21    1      4678899999999999998763 6999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |||+||....    +.+.++++..+++|+.++..+++++ +.+.  +   ..+||++||.+.
T Consensus        78 vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~--~---~~~iv~~SS~~v  129 (321)
T 2pk3_A           78 IFHLAAKSSV----KDSWLNKKGTFSTNVFGTLHVLDAV-RDSN--L---DCRILTIGSSEE  129 (321)
T ss_dssp             EEECCSCCCH----HHHTTCHHHHHHHHHHHHHHHHHHH-HHHT--C---CCEEEEEEEGGG
T ss_pred             EEEcCcccch----hhhhhcHHHHHHHHHHHHHHHHHHH-HHhC--C---CCeEEEEccHHh
Confidence            9999996442    1123356788999999999999988 5441  1   249999999853

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.70  E-value=5.6e-17  Score=126.03  Aligned_cols=127  Identities=15%  Similarity=0.141  Sum_probs=99.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcC-------CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEG-------ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g-------~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      .+++++++||||+|+||++++++|+++|       ++|++++|+.+....       ..+.++.++.+|++|.+++++++
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~   83 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-------GFSGAVDARAADLSAPGEAEKLV   83 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-------TCCSEEEEEECCTTSTTHHHHHH
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-------ccCCceeEEEcCCCCHHHHHHHH
Confidence            4678999999999999999999999999       899999997643211       12456788999999999998887


Q ss_pred             HhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          107 DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       107 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +  +++|++||+||....     .+.++++..+++|+.++..+++++.+...+.+  ...+||++||.+.
T Consensus        84 ~--~~~d~vih~A~~~~~-----~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~--~~~~iv~~SS~~~  144 (342)
T 2hrz_A           84 E--ARPDVIFHLAAIVSG-----EAELDFDKGYRINLDGTRYLFDAIRIANGKDG--YKPRVVFTSSIAV  144 (342)
T ss_dssp             H--TCCSEEEECCCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHC--CCCEEEEEEEGGG
T ss_pred             h--cCCCEEEECCccCcc-----cccccHHHHHHHHHHHHHHHHHHHHhcccccC--CCcEEEEeCchHh
Confidence            6  379999999996431     23466888999999999999998866432211  1249999999854

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.70  E-value=1.1e-16  Score=124.13  Aligned_cols=126  Identities=23%  Similarity=0.282  Sum_probs=92.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|+||++++++|+++|++|++++|..+..++..+++....+.++..+.+|++|+++++++++.. ++|+|||+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~D~vih~   80 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH-AIDTVIHF   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT-TCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhcc-CCCEEEEC
Confidence            69999999999999999999999999999864322111122222222445778899999999999988865 69999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ||......    ..++++..+++|+.++..+++++    ++.+   ..+||++||.+.
T Consensus        81 A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~iv~~SS~~~  127 (338)
T 1udb_A           81 AGLKAVGE----SVQKPLEYYDNNVNGTLRLISAM----RAAN---VKNFIFSSSATV  127 (338)
T ss_dssp             CSCCCHHH----HHHCHHHHHHHHHHHHHHHHHHH----HHHT---CCEEEEEEEGGG
T ss_pred             CccCcccc----chhcHHHHHHHHHHHHHHHHHHH----HhcC---CCeEEEEccHHH
Confidence            99643211    22345678999999999998864    3332   238999999753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.70  E-value=1.4e-16  Score=124.38  Aligned_cols=128  Identities=20%  Similarity=0.185  Sum_probs=98.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh----HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE----KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      ++++++|||||+|+||++++++|+++|++|++++|+..    ..+...+++....+..+.++.+|++|.++++++++   
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---  101 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA---  101 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT---
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc---
Confidence            56789999999999999999999999999999999753    23333222211112457889999999999988887   


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++|++||+||.....    .+.++++..+++|+.++..+++++.+    .+   ..+||++||.+.
T Consensus       102 ~~d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~----~~---~~~~v~~SS~~~  156 (352)
T 1sb8_A          102 GVDYVLHQAALGSVP----RSINDPITSNATNIDGFLNMLIAARD----AK---VQSFTYAASSST  156 (352)
T ss_dssp             TCSEEEECCSCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHH----TT---CSEEEEEEEGGG
T ss_pred             CCCEEEECCcccCch----hhhhCHHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEeccHHh
Confidence            699999999964321    13456788899999999999998744    22   348999999764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.70  E-value=5.9e-17  Score=125.72  Aligned_cols=129  Identities=19%  Similarity=0.213  Sum_probs=93.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++|++|||||+|+||++++++|+++|++|++++|+.+..++........ .+.++.++.+|++|.++++++++   .+|
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d   79 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK---GCT   79 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT---TCS
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc---CCC
Confidence            36789999999999999999999999999999999876433222111100 01257788999999988888876   589


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++||+|+...   ....  +..+..+++|+.++.++++++.+..      ...+||++||.++.
T Consensus        80 ~Vih~A~~~~---~~~~--~~~~~~~~~nv~gt~~ll~a~~~~~------~~~riV~~SS~~~~  132 (337)
T 2c29_D           80 GVFHVATPMD---FESK--DPENEVIKPTIEGMLGIMKSCAAAK------TVRRLVFTSSAGTV  132 (337)
T ss_dssp             EEEECCCCCC---SSCS--SHHHHTHHHHHHHHHHHHHHHHHHS------CCCEEEEECCGGGT
T ss_pred             EEEEeccccC---CCCC--ChHHHHHHHHHHHHHHHHHHHHhCC------CccEEEEeeeHhhc
Confidence            9999998542   1111  2235679999999999999875532      12499999998643

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.69  E-value=6.5e-17  Score=127.26  Aligned_cols=130  Identities=16%  Similarity=0.090  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-----HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      |+++||||+|+||++++++|+++|++|++++|+++.     .+...++.....+..+.++.+|++|.+++.++++.. ++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~  103 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-KP  103 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH-CC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc-CC
Confidence            789999999999999999999999999999997542     111111000001345778899999999999998876 68


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+|||+||....    ..+.++++..+++|+.++..+++++.+...+.    ..+||++||.+.
T Consensus       104 d~vih~A~~~~~----~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~----~~~iv~~SS~~~  159 (375)
T 1t2a_A          104 TEIYNLGAQSHV----KISFDLAEYTADVDGVGTLRLLDAVKTCGLIN----SVKFYQASTSEL  159 (375)
T ss_dssp             SEEEECCSCCCH----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT----TCEEEEEEEGGG
T ss_pred             CEEEECCCcccc----cccccCHHHHHHHHHHHHHHHHHHHHHhCCCc----cceEEEecchhh
Confidence            999999996432    12345678899999999999999886543211    139999999754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.69  E-value=1.8e-16  Score=123.38  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      ...+.++|++|||||+|+||++++++|+++|++|++++|+++.             ..+.++.+|++|.+++.++++   
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------------~~~~~~~~Dl~d~~~~~~~~~---   76 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------------TGGEEVVGSLEDGQALSDAIM---   76 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------------SCCSEEESCTTCHHHHHHHHT---
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------------CCccEEecCcCCHHHHHHHHh---
Confidence            3345678999999999999999999999999999999998653             345678899999999988887   


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++|++||+|+....      +.+.++..+++|+.++..+++++..    .+   ..+||++||.+
T Consensus        77 ~~d~vih~A~~~~~------~~~~~~~~~~~nv~~~~~ll~a~~~----~~---~~~~V~~SS~~  128 (347)
T 4id9_A           77 GVSAVLHLGAFMSW------APADRDRMFAVNVEGTRRLLDAASA----AG---VRRFVFASSGE  128 (347)
T ss_dssp             TCSEEEECCCCCCS------SGGGHHHHHHHHTHHHHHHHHHHHH----TT---CSEEEEEEEGG
T ss_pred             CCCEEEECCcccCc------chhhHHHHHHHHHHHHHHHHHHHHH----cC---CCeEEEECCHH
Confidence            69999999986543      3344588999999999999998733    22   34999999954

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.69  E-value=1.1e-16  Score=126.15  Aligned_cols=130  Identities=15%  Similarity=0.081  Sum_probs=99.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-----HHHHHHHHHhhcCc-eEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGI-EVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~-~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      |++|||||+|+||++++++|+++|++|++++|+.+.     .+....+... .+. .+.++.+|++|.+++.++++.. +
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~-~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN-VNKALMKLHYADLTDASSLRRWIDVI-K  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH-C
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhcccc-ccccceEEEECCCCCHHHHHHHHHhc-C
Confidence            789999999999999999999999999999997653     1111111110 112 5788899999999999998876 6


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|+|||+||....    ..+.++++..+++|+.++..+++++.+...++++  .++||++||.+
T Consensus       107 ~d~Vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~--~~~~v~~SS~~  164 (381)
T 1n7h_A          107 PDEVYNLAAQSHV----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR--TVKYYQAGSSE  164 (381)
T ss_dssp             CSEEEECCSCCCH----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC--CCEEEEEEEGG
T ss_pred             CCEEEECCcccCc----cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCC--ccEEEEeCcHH
Confidence            8999999996432    1234567889999999999999999887655321  23899999975

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.69  E-value=2.4e-16  Score=122.82  Aligned_cols=129  Identities=18%  Similarity=0.137  Sum_probs=98.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc----CceEEEEEeeCCCHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT----GIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      .+++|++|||||+|+||++++++|.++|++|++++|+........+.+....    ..++.++.+|++|.++++++++  
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   99 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK--   99 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--
Confidence            3578999999999999999999999999999999997653333333332211    1468889999999999988887  


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                       ++|++||+||....    ..+.+++...+++|+.++..+++++..    .+   ..++|++||.+.
T Consensus       100 -~~d~Vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~ll~a~~~----~~---~~~~v~~SS~~v  154 (351)
T 3ruf_A          100 -GVDHVLHQAALGSV----PRSIVDPITTNATNITGFLNILHAAKN----AQ---VQSFTYAASSST  154 (351)
T ss_dssp             -TCSEEEECCCCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHH----TT---CSEEEEEEEGGG
T ss_pred             -CCCEEEECCccCCc----chhhhCHHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEEecHHh
Confidence             69999999996432    123455677899999999999998733    22   348999999753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.67  E-value=4.9e-16  Score=115.15  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=83.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+..|+++||||+|+||++++++|+++| ++|++++|++++.++       .....+..+.+|++|+++++++++   ++
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~---~~   89 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK-------PYPTNSQIIMGDVLNHAALKQAMQ---GQ   89 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS-------SCCTTEEEEECCTTCHHHHHHHHT---TC
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc-------cccCCcEEEEecCCCHHHHHHHhc---CC
Confidence            3457899999999999999999999999 899999999865432       123467889999999999998887   58


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |++|||+|..        +.              ...++.+++.|++.+.   .+||++||..+.
T Consensus        90 D~vv~~a~~~--------~~--------------~~~~~~~~~~~~~~~~---~~iV~iSS~~~~  129 (236)
T 3qvo_A           90 DIVYANLTGE--------DL--------------DIQANSVIAAMKACDV---KRLIFVLSLGIY  129 (236)
T ss_dssp             SEEEEECCST--------TH--------------HHHHHHHHHHHHHTTC---CEEEEECCCCC-
T ss_pred             CEEEEcCCCC--------ch--------------hHHHHHHHHHHHHcCC---CEEEEEecceec
Confidence            9999999841        10              1224567777776653   399999997653

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.67  E-value=1.1e-16  Score=124.17  Aligned_cols=123  Identities=19%  Similarity=0.183  Sum_probs=88.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH--HHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA--KQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~--~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +|++|||||+|+||++++++|+++|++|+++.|+.+..++.  ...+.  ...++.++.+|++|.++++++++   ++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~---~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ--ELGDLKIFRADLTDELSFEAPIA---GCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG--GGSCEEEEECCTTTSSSSHHHHT---TCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC--CCCcEEEEecCCCChHHHHHHHc---CCCE
Confidence            68999999999999999999999999999988876532111  11221  12357788999999888888776   5899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |||+|+....   .  ..+..++.+++|+.|+.++++++.+..      ...+||++||.+
T Consensus        84 Vih~A~~~~~---~--~~~~~~~~~~~nv~gt~~ll~aa~~~~------~v~r~V~~SS~~  133 (338)
T 2rh8_A           84 VFHVATPVHF---A--SEDPENDMIKPAIQGVVNVMKACTRAK------SVKRVILTSSAA  133 (338)
T ss_dssp             EEEESSCCCC--------------CHHHHHHHHHHHHHHHHCT------TCCEEEEECCHH
T ss_pred             EEEeCCccCC---C--CCCcHHHHHHHHHHHHHHHHHHHHHcC------CcCEEEEEecHH
Confidence            9999985421   1  112224589999999999999875421      134999999976

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.66  E-value=1.8e-16  Score=122.01  Aligned_cols=124  Identities=15%  Similarity=0.235  Sum_probs=87.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHH--HHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEA--KQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~--~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +|++|||||+|+||++++++|+++|++|++++| +++..+..  ..++. ..+.++.++.+|++|.++++++++   .+|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~---~~d   76 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLP-GASEKLHFFNADLSNPDSFAAAIE---GCV   76 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTST-THHHHEEECCCCTTCGGGGHHHHT---TCS
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhh-ccCCceEEEecCCCCHHHHHHHHc---CCC
Confidence            588999999999999999999999999999888 54321110  01111 001246778899999999888886   579


Q ss_pred             EEEecCCCCCCCCcccCCHHH-HHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDE-VRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +|||+|+..   .   .+.++ ++..+++|+.++.++++++.+.+      +..+||++||.++
T Consensus        77 ~vih~A~~~---~---~~~~~~~~~~~~~nv~gt~~l~~aa~~~~------~~~~iV~~SS~~~  128 (322)
T 2p4h_X           77 GIFHTASPI---D---FAVSEPEEIVTKRTVDGALGILKACVNSK------TVKRFIYTSSGSA  128 (322)
T ss_dssp             EEEECCCCC--------------CHHHHHHHHHHHHHHHHHTTCS------SCCEEEEEEEGGG
T ss_pred             EEEEcCCcc---c---CCCCChHHHHHHHHHHHHHHHHHHHHhcC------CccEEEEeccHHH
Confidence            999999642   1   12222 34589999999999999885531      1349999999864

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.66  E-value=3.1e-16  Score=122.56  Aligned_cols=129  Identities=18%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKE-GARVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++|||||+|+||++++++|+++ |++|++++|+..  ..+.. +++.  .+.++..+.+|++|.+++++++++. ++|+|
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~v   77 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS--ESNRYNFEHADICDSAEITRIFEQY-QPDAV   77 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT--TCTTEEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh--cCCCeEEEECCCCCHHHHHHHHhhc-CCCEE
Confidence            5999999999999999999998 799999998642  11111 1111  1346788999999999999998765 69999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc--CCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ--NGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~~~iv~iss~~  175 (179)
                      ||+||....    +.+.++++..+++|+.++..+++++.+.|...+  .+..++||++||.+
T Consensus        78 ih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~  135 (361)
T 1kew_A           78 MHLAAESHV----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE  135 (361)
T ss_dssp             EECCSCCCH----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG
T ss_pred             EECCCCcCh----hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHH
Confidence            999996431    223456778899999999999999988875321  00012899999964

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.66  E-value=1.8e-16  Score=116.00  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhhCCCcEEEe
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~~~id~li~  117 (179)
                      +++||||+|+||++++++|+++|++|++++|++++.+..         ..+.++.+|++| .+++.++++   ++|++||
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~~---~~d~vi~   69 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---------NNVKAVHFDVDWTPEEMAKQLH---GMDAIIN   69 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---------TTEEEEECCTTSCHHHHHTTTT---TCSEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---------CCceEEEecccCCHHHHHHHHc---CCCEEEE
Confidence            699999999999999999999999999999997653321         457889999999 888877776   6999999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +||.....            .+++|+.++..+++++    ++.+   ..+||++||..+.
T Consensus        70 ~ag~~~~~------------~~~~n~~~~~~l~~a~----~~~~---~~~iv~~SS~~~~  110 (219)
T 3dqp_A           70 VSGSGGKS------------LLKVDLYGAVKLMQAA----EKAE---VKRFILLSTIFSL  110 (219)
T ss_dssp             CCCCTTSS------------CCCCCCHHHHHHHHHH----HHTT---CCEEEEECCTTTT
T ss_pred             CCcCCCCC------------cEeEeHHHHHHHHHHH----HHhC---CCEEEEECccccc
Confidence            99975421            5788999999988876    2222   3499999998654

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.66  E-value=3.4e-16  Score=121.24  Aligned_cols=124  Identities=16%  Similarity=0.235  Sum_probs=93.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +++++|||||+|+||++++++|+++|  ++|++++|+..  ..+.. +++.  .+.++.++.+|++|.+++++++.   +
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~~Dl~d~~~~~~~~~---~   75 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE--DDPRYTFVKGDVADYELVKELVR---K   75 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT--TCTTEEEEECCTTCHHHHHHHHH---T
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc--cCCceEEEEcCCCCHHHHHHHhh---C
Confidence            35689999999999999999999997  89999998642  11111 1111  13467889999999999988884   6


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|++||+||....    +.+.++++..+++|+.++..+++++.+.   ..   ..+||++||.+
T Consensus        76 ~d~vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~---~~---~~~iv~~SS~~  129 (336)
T 2hun_A           76 VDGVVHLAAESHV----DRSISSPEIFLHSNVIGTYTLLESIRRE---NP---EVRFVHVSTDE  129 (336)
T ss_dssp             CSEEEECCCCCCH----HHHHHCTHHHHHHHHHHHHHHHHHHHHH---CT---TSEEEEEEEGG
T ss_pred             CCEEEECCCCcCh----hhhhhCHHHHHHHHHHHHHHHHHHHHHh---CC---CcEEEEeccHH
Confidence            9999999996431    1234556788999999999999998765   11   23999999964

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.65  E-value=8.8e-16  Score=118.85  Aligned_cols=129  Identities=17%  Similarity=0.088  Sum_probs=95.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH-HHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE-EAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ..++++|||||+|+||++++++|+++|++|++++|+.+... ...+.+.  ....+.++.+|++|.++++++++.. ++|
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d   88 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG--IEGDIQYEDGDMADACSVQRAVIKA-QPQ   88 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHH-CCS
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc--ccCceEEEECCCCCHHHHHHHHHHc-CCC
Confidence            46889999999999999999999999999999999865311 1111111  1345788899999999999998876 689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++||+||.....    .+.++++..+++|+.++..+++++.+.    +.  ..++|++||.+.
T Consensus        89 ~Vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~--~~~~v~~SS~~v  141 (335)
T 1rpn_A           89 EVYNLAAQSFVG----ASWNQPVTTGVVDGLGVTHLLEAIRQF----SP--ETRFYQASTSEM  141 (335)
T ss_dssp             EEEECCSCCCHH----HHTTSHHHHHHHHTHHHHHHHHHHHHH----CT--TSEEEEEEEGGG
T ss_pred             EEEECccccchh----hhhhChHHHHHHHHHHHHHHHHHHHHh----CC--CCeEEEEeCHHH
Confidence            999999964321    112346778999999999999987442    21  139999999643

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.65  E-value=1e-15  Score=129.60  Aligned_cols=133  Identities=17%  Similarity=0.225  Sum_probs=95.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      ...+++|++|||||+|+||++++++|+++|++|++++|+.+...+..+++....+..+..+.+|+++.+++++++++. +
T Consensus         6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~   84 (699)
T 1z45_A            6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-K   84 (699)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS-C
T ss_pred             ccccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC-C
Confidence            345678999999999999999999999999999999987543222222222222445778899999999999998876 6


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +|+|||+||......    ..+.....+++|+.++..+++++.    +.+   ..+||++||.+.
T Consensus        85 ~D~Vih~A~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~a~~----~~~---~~~iV~~SS~~v  138 (699)
T 1z45_A           85 IDSVIHFAGLKAVGE----STQIPLRYYHNNILGTVVLLELMQ----QYN---VSKFVFSSSATV  138 (699)
T ss_dssp             CCEEEECCSCCCHHH----HHHSHHHHHHHHHHHHHHHHHHHH----HHT---CCEEEEEEEGGG
T ss_pred             CCEEEECCcccCcCc----cccCHHHHHHHHHHHHHHHHHHHH----HcC---CCEEEEECcHHH
Confidence            999999999644211    122345678999999999887653    332   238999999753

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.64  E-value=8.6e-16  Score=119.50  Aligned_cols=129  Identities=12%  Similarity=0.163  Sum_probs=90.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHh-hcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQL-ATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +...++++|||||+|+||++++++|+++|  ++|++.+|+.....  .+.+.. .....+.++.+|++|.++++++++..
T Consensus        20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   97 (346)
T 4egb_A           20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQDHPNYYFVKGEIQNGELLEHVIKER   97 (346)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhc
Confidence            34678899999999999999999999999  67888877642110  011111 11246888999999999999999875


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                       ++|++||+||.....    ...++++..+++|+.++..+++++..    .+   ..++|++||.+
T Consensus        98 -~~d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~----~~---~~~~v~~SS~~  151 (346)
T 4egb_A           98 -DVQVIVNFAAESHVD----RSIENPIPFYDTNVIGTVTLLELVKK----YP---HIKLVQVSTDE  151 (346)
T ss_dssp             -TCCEEEECCCCC-------------CHHHHHHTHHHHHHHHHHHH----ST---TSEEEEEEEGG
T ss_pred             -CCCEEEECCcccchh----hhhhCHHHHHHHHHHHHHHHHHHHHh----cC---CCEEEEeCchH
Confidence             599999999975432    23456677899999999999988733    22   34899999964

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.64  E-value=9.3e-16  Score=117.83  Aligned_cols=112  Identities=17%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +|+++||||+|+||++++++|+++|++|++++|+.+.           .+    .+.+|+++.++++++++.. ++|++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------~~----~~~~Dl~d~~~~~~~~~~~-~~d~vi   65 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------PK----FEQVNLLDSNAVHHIIHDF-QPHVIV   65 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---------------------------------CHHHHHHH-CCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------CC----eEEecCCCHHHHHHHHHhh-CCCEEE
Confidence            6789999999999999999999999999999987543           01    5678999999998888765 689999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+||.....    .+.++++..+++|+.++..+++++.+.    +    .++|++||.+.
T Consensus        66 h~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~----~~~v~~SS~~v  113 (315)
T 2ydy_A           66 HCAAERRPD----VVENQPDAASQLNVDASGNLAKEAAAV----G----AFLIYISSDYV  113 (315)
T ss_dssp             ECC-----------------------CHHHHHHHHHHHHH----T----CEEEEEEEGGG
T ss_pred             ECCcccChh----hhhcCHHHHHHHHHHHHHHHHHHHHHc----C----CeEEEEchHHH
Confidence            999965431    245667889999999999999988542    1    28999999764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.64  E-value=9.5e-16  Score=118.90  Aligned_cols=116  Identities=14%  Similarity=0.187  Sum_probs=86.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      ++++||||+|+||++++++|+++|++|++++|+++..++    +.   ...+..+.+|++|.++++++++   ++|++||
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~---~~~~~~~~~Dl~d~~~~~~~~~---~~d~vih   83 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR----LA---YLEPECRVAEMLDHAGLERALR---GLDGVIF   83 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG----GG---GGCCEEEECCTTCHHHHHHHTT---TCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh----hc---cCCeEEEEecCCCHHHHHHHHc---CCCEEEE
Confidence            489999999999999999999999999999998764322    11   1256778999999999888876   5899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +||...      ...++++..+++|+.++..+++++.+.    +   ..++|++||.+.
T Consensus        84 ~a~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~~----~---~~~~v~~SS~~~  129 (342)
T 2x4g_A           84 SAGYYP------SRPRRWQEEVASALGQTNPFYAACLQA----R---VPRILYVGSAYA  129 (342)
T ss_dssp             C------------------CHHHHHHHHHHHHHHHHHHH----T---CSCEEEECCGGG
T ss_pred             CCccCc------CCCCCHHHHHHHHHHHHHHHHHHHHHc----C---CCeEEEECCHHh
Confidence            999643      134567778999999999999988653    2   238999999764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.63  E-value=1.3e-15  Score=121.98  Aligned_cols=124  Identities=14%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh---HHHHHHHHHHh--------hcCceEEEEEeeCCCHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE---KLEEAKQSIQL--------ATGIEVATYSADVRDFDAV  102 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~---~~~~~~~~~~~--------~~~~~v~~~~~D~~~~~~v  102 (179)
                      ...+|++|||||+|+||++++++|+++|++|++++|+++   ..+...+.+..        ..+.++.++.+|+++.+.+
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            346789999999999999999999999999999999887   33333333321        1235688999999998777


Q ss_pred             HHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          103 KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       103 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      .    ..+++|+|||+||...       ..++++..+++|+.++.++++++.+     +   ..++|++||.+.
T Consensus       146 ~----~~~~~d~Vih~A~~~~-------~~~~~~~~~~~Nv~g~~~l~~aa~~-----~---~~~~v~~SS~~~  200 (427)
T 4f6c_A          146 V----LPENMDTIIHAGARTD-------HFGDDDEFEKVNVQGTVDVIRLAQQ-----H---HARLIYVSTISV  200 (427)
T ss_dssp             C----CSSCCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHH-----T---TCEEEEEEEGGG
T ss_pred             C----CcCCCCEEEECCcccC-------CCCCHHHHHHHHHHHHHHHHHHHHh-----c---CCcEEEECchHh
Confidence            6    4568999999999653       2355678899999999999998854     1   238999999764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.62  E-value=1.5e-15  Score=119.80  Aligned_cols=123  Identities=18%  Similarity=0.075  Sum_probs=94.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +.++++++||||+|+||++++++|+++|++|++++|+.+....    .   ....+.++.+|++|.++++++++   ++|
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~---~~~~v~~~~~Dl~d~~~~~~~~~---~~d   95 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT----E---DMFCDEFHLVDLRVMENCLKVTE---GVD   95 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC----G---GGTCSEEEECCTTSHHHHHHHHT---TCS
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh----h---ccCCceEEECCCCCHHHHHHHhC---CCC
Confidence            3467899999999999999999999999999999998653211    0   12346778999999999988886   699


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ++||+||......+   ..++++..+++|+.++..+++++..    .+   ..+||++||.+.
T Consensus        96 ~Vih~A~~~~~~~~---~~~~~~~~~~~Nv~g~~~ll~a~~~----~~---~~~~V~~SS~~v  148 (379)
T 2c5a_A           96 HVFNLAADMGGMGF---IQSNHSVIMYNNTMISFNMIEAARI----NG---IKRFFYASSACI  148 (379)
T ss_dssp             EEEECCCCCCCHHH---HTTCHHHHHHHHHHHHHHHHHHHHH----TT---CSEEEEEEEGGG
T ss_pred             EEEECceecCcccc---cccCHHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEEeehhe
Confidence            99999996542111   1244677899999999999998732    22   348999999653

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.62  E-value=2.5e-15  Score=116.03  Aligned_cols=120  Identities=17%  Similarity=0.259  Sum_probs=93.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      |+++||||+|+||++++++|+++|++|++++|+.....   +.+    ...+..+.+|++|.+++++++++. ++|++||
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~----~~~~~~~~~D~~~~~~~~~~~~~~-~~d~vih   73 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---DAI----TEGAKFYNGDLRDKAFLRDVFTQE-NIEAVMH   73 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GGS----CTTSEEEECCTTCHHHHHHHHHHS-CEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---hhc----CCCcEEEECCCCCHHHHHHHHhhc-CCCEEEE
Confidence            68999999999999999999999999999998754321   111    125677899999999999988764 6999999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +||.....    .+.++++..+++|+.++..+++++.    +.+   ..++|++||.+.
T Consensus        74 ~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~----~~~---~~~~v~~Ss~~~  121 (330)
T 2c20_A           74 FAADSLVG----VSMEKPLQYYNNNVYGALCLLEVMD----EFK---VDKFIFSSTAAT  121 (330)
T ss_dssp             CCCCCCHH----HHHHSHHHHHHHHHHHHHHHHHHHH----HTT---CCEEEEECCGGG
T ss_pred             CCcccCcc----ccccCHHHHHHHHhHHHHHHHHHHH----HcC---CCEEEEeCCcee
Confidence            99964321    1345677889999999999998763    222   348999999653

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.62  E-value=3.1e-16  Score=118.07  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=90.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +|+++||||+|+||++++++|+++|++|++++|+++...          ...+.++.+|++|.+++.++++   ++|++|
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi   68 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA----------EAHEEIVACDLADAQAVHDLVK---DCDGII   68 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC----------CTTEEECCCCTTCHHHHHHHHT---TCSEEE
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc----------CCCccEEEccCCCHHHHHHHHc---CCCEEE
Confidence            468999999999999999999999999999999865310          1236778999999999988886   589999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+||...        .+.++..+++|+.++..+++++.+    .+   ..+||++||...
T Consensus        69 ~~a~~~~--------~~~~~~~~~~n~~~~~~l~~a~~~----~~---~~~iv~~SS~~~  113 (267)
T 3ay3_A           69 HLGGVSV--------ERPWNDILQANIIGAYNLYEAARN----LG---KPRIVFASSNHT  113 (267)
T ss_dssp             ECCSCCS--------CCCHHHHHHHTHHHHHHHHHHHHH----TT---CCEEEEEEEGGG
T ss_pred             ECCcCCC--------CCCHHHHHHHHHHHHHHHHHHHHH----hC---CCEEEEeCCHHH
Confidence            9999642        234577899999999999998743    22   349999999754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.5e-15  Score=111.56  Aligned_cols=112  Identities=18%  Similarity=0.196  Sum_probs=88.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .++++||||+|+||++++++|+++|++|++++|+++..+..        ...+.++.+|++|.++++++++   ++|++|
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi   72 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE--------NEHLKVKKADVSSLDEVCEVCK---GADAVI   72 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC--------CTTEEEECCCTTCHHHHHHHHT---TCSEEE
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc--------cCceEEEEecCCCHHHHHHHhc---CCCEEE
Confidence            37899999999999999999999999999999997653211        2467889999999999998887   589999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+||....      .    ...+++|+.++..+++++..    .+   ..++|++||..+
T Consensus        73 ~~a~~~~~------~----~~~~~~n~~~~~~l~~~~~~----~~---~~~~v~~Ss~~~  115 (227)
T 3dhn_A           73 SAFNPGWN------N----PDIYDETIKVYLTIIDGVKK----AG---VNRFLMVGGAGS  115 (227)
T ss_dssp             ECCCC----------------CCSHHHHHHHHHHHHHHH----TT---CSEEEEECCSTT
T ss_pred             EeCcCCCC------C----hhHHHHHHHHHHHHHHHHHH----hC---CCEEEEeCChhh
Confidence            99985421      1    12688899999888887633    22   338999999764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.61  E-value=2.2e-15  Score=117.19  Aligned_cols=121  Identities=20%  Similarity=0.279  Sum_probs=92.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhH-HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEK-LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .|++|||||+|+||++++++|+++  |++|++++|+... ..+   .+....+.++.++.+|++|.++++++++   .+|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA---NLEAILGDRVELVVGDIADAELVDKLAA---KAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG---GTGGGCSSSEEEEECCTTCHHHHHHHHT---TCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChh---HHhhhccCCeEEEECCCCCHHHHHHHhh---cCC
Confidence            378999999999999999999999  8999999996531 111   1111113467889999999999988887   469


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++||+||....    +.+.++++..+++|+.++..+++++.+.      + . +||++||.+
T Consensus        78 ~vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~------~-~-~~v~~SS~~  127 (348)
T 1oc2_A           78 AIVHYAAESHN----DNSLNDPSPFIHTNFIGTYTLLEAARKY------D-I-RFHHVSTDE  127 (348)
T ss_dssp             EEEECCSCCCH----HHHHHCCHHHHHHHTHHHHHHHHHHHHH------T-C-EEEEEEEGG
T ss_pred             EEEECCcccCc----cchhhCHHHHHHHHHHHHHHHHHHHHHh------C-C-eEEEecccc
Confidence            99999996431    1233556788999999999999998654      1 2 899999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.61  E-value=7.8e-15  Score=105.80  Aligned_cols=112  Identities=19%  Similarity=0.175  Sum_probs=86.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +++++||||+|+||++++++|+++|++|++++|+++..+.       ....++..+.+|++|++++.++++   .+|++|
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-------EGPRPAHVVVGDVLQAADVDKTVA---GQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-------SSCCCSEEEESCTTSHHHHHHHHT---TCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc-------ccCCceEEEEecCCCHHHHHHHHc---CCCEEE
Confidence            4789999999999999999999999999999998765321       113457788999999999988876   589999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |++|......     +      .++|+.++..+++++..    .+   ..++|++||...
T Consensus        73 ~~a~~~~~~~-----~------~~~n~~~~~~~~~~~~~----~~---~~~~v~~Ss~~~  114 (206)
T 1hdo_A           73 VLLGTRNDLS-----P------TTVMSEGARNIVAAMKA----HG---VDKVVACTSAFL  114 (206)
T ss_dssp             ECCCCTTCCS-----C------CCHHHHHHHHHHHHHHH----HT---CCEEEEECCGGG
T ss_pred             ECccCCCCCC-----c------cchHHHHHHHHHHHHHH----hC---CCeEEEEeeeee
Confidence            9999654311     1      13678888877776533    32   238999999754

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.61  E-value=1e-15  Score=120.65  Aligned_cols=124  Identities=10%  Similarity=0.098  Sum_probs=94.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+++++++||||+|+||++++++|+++| ++|++++|+.+...+   .+.  ....+.++.+|++|.++++++++   ++
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~--~~~~v~~~~~Dl~d~~~l~~~~~---~~  100 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP--DHPAVRFSETSITDDALLASLQD---EY  100 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC--CCTTEEEECSCTTCHHHHHHCCS---CC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc--CCCceEEEECCCCCHHHHHHHhh---CC
Confidence            4678999999999999999999999999 999999998653211   110  13467888999999988877765   79


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+|||+||.....    .+.++++..+++|+.++..+++++..    .  ++..++|++||.+
T Consensus       101 d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~----~--~~~~~~V~~SS~~  153 (377)
T 2q1s_A          101 DYVFHLATYHGNQ----SSIHDPLADHENNTLTTLKLYERLKH----F--KRLKKVVYSAAGC  153 (377)
T ss_dssp             SEEEECCCCSCHH----HHHHCHHHHHHHHTHHHHHHHHHHTT----C--SSCCEEEEEEEC-
T ss_pred             CEEEECCCccCch----hhhhCHHHHHHHHHHHHHHHHHHHHH----h--CCCCeEEEeCCHH
Confidence            9999999964321    23355678899999999999998732    1  0234899999964

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.60  E-value=1.9e-15  Score=115.99  Aligned_cols=117  Identities=20%  Similarity=0.301  Sum_probs=90.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      ++|||||+|+||++++++|+++|++|++++|..+...   +.+    ...+..+.+|++|.+++++++++. ++|++||+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~----~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~vi~~   73 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR---ENV----PKGVPFFRVDLRDKEGVERAFREF-RPTHVSHQ   73 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG---GGS----CTTCCEECCCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch---hhc----ccCeEEEECCCCCHHHHHHHHHhc-CCCEEEEC
Confidence            6999999999999999999999999999998543211   001    123567789999999999988765 68999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      |+....    ..+.++++..+++|+.++..+++++..    .+   ..+||++||.
T Consensus        74 a~~~~~----~~~~~~~~~~~~~N~~g~~~l~~a~~~----~~---~~~iv~~SS~  118 (311)
T 2p5y_A           74 AAQASV----KVSVEDPVLDFEVNLLGGLNLLEACRQ----YG---VEKLVFASTG  118 (311)
T ss_dssp             CSCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHH----TT---CSEEEEEEEH
T ss_pred             ccccCc----hhhhhCHHHHHHHHHHHHHHHHHHHHH----hC---CCEEEEeCCC
Confidence            986432    123456788999999999999998732    22   3489999997

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.60  E-value=5e-15  Score=108.04  Aligned_cols=107  Identities=15%  Similarity=0.268  Sum_probs=79.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      ++++||||+|+||++++++|+++|++|++++|++++.++..        ..+..+.+|++|.++     +..+++|++||
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~D~~d~~~-----~~~~~~d~vi~   67 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--------KDINILQKDIFDLTL-----SDLSDQNVVVD   67 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--------SSSEEEECCGGGCCH-----HHHTTCSEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--------CCCeEEeccccChhh-----hhhcCCCEEEE
Confidence            36999999999999999999999999999999987654321        346788999998876     33457999999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +||....             ..+.|+.++..++++    +++.+   ..++|++||..+.
T Consensus        68 ~ag~~~~-------------~~~~~~~~~~~l~~a----~~~~~---~~~~v~~SS~~~~  107 (221)
T 3ew7_A           68 AYGISPD-------------EAEKHVTSLDHLISV----LNGTV---SPRLLVVGGAASL  107 (221)
T ss_dssp             CCCSSTT-------------TTTSHHHHHHHHHHH----HCSCC---SSEEEEECCCC--
T ss_pred             CCcCCcc-------------ccchHHHHHHHHHHH----HHhcC---CceEEEEecceEE
Confidence            9997322             134466666555554    44332   3499999998653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.59  E-value=2e-15  Score=118.55  Aligned_cols=121  Identities=13%  Similarity=0.221  Sum_probs=94.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC-CHHHHHHHHHhhCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR-DFDAVKTALDEAGP  111 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~v~~~~~~~~~  111 (179)
                      .+++++++||||+|.||++++++|.++ |++|++++|+.+..+...      ....+.++.+|++ +.+.++++++   +
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~------~~~~v~~~~~Dl~~d~~~~~~~~~---~   91 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV------KHERMHFFEGDITINKEWVEYHVK---K   91 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG------GSTTEEEEECCTTTCHHHHHHHHH---H
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc------cCCCeEEEeCccCCCHHHHHHHhc---c
Confidence            357889999999999999999999999 999999999876433211      1246888999999 9999998887   5


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|+|||+|+.....    ...++....+++|+.++..+++++..    .+    .++|++||.+
T Consensus        92 ~d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~----~~----~~~v~~SS~~  143 (372)
T 3slg_A           92 CDVILPLVAIATPA----TYVKQPLRVFELDFEANLPIVRSAVK----YG----KHLVFPSTSE  143 (372)
T ss_dssp             CSEEEECBCCCCHH----HHHHCHHHHHHHHTTTTHHHHHHHHH----HT----CEEEEECCGG
T ss_pred             CCEEEEcCccccHH----HHhhCHHHHHHHHHHHHHHHHHHHHH----hC----CcEEEeCcHH
Confidence            89999999965432    12344567889999999999888743    22    3899999953

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.59  E-value=1.4e-14  Score=106.01  Aligned_cols=108  Identities=17%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|+||++++++|+++|++|++++|+++..++.       ....+..+.+|++|.++     +..+++|+|||+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~~~~~~~~~~D~~d~~~-----~~~~~~d~vi~~   69 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-------LGATVATLVKEPLVLTE-----ADLDSVDAVVDA   69 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------TCTTSEEEECCGGGCCH-----HHHTTCSEEEEC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc-------cCCCceEEecccccccH-----hhcccCCEEEEC
Confidence            599999999999999999999999999999998765432       12457788999999876     334579999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ||......           ..+.|+.++..+++++    ++.+    .++|++||.++.
T Consensus        70 ag~~~~~~-----------~~~~n~~~~~~l~~a~----~~~~----~~~v~~SS~~~~  109 (224)
T 3h2s_A           70 LSVPWGSG-----------RGYLHLDFATHLVSLL----RNSD----TLAVFILGSASL  109 (224)
T ss_dssp             CCCCTTSS-----------CTHHHHHHHHHHHHTC----TTCC----CEEEEECCGGGS
T ss_pred             CccCCCcc-----------hhhHHHHHHHHHHHHH----HHcC----CcEEEEecceee
Confidence            99752111           1355777776666654    3332    499999987653

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.58  E-value=8.4e-15  Score=110.17  Aligned_cols=110  Identities=21%  Similarity=0.242  Sum_probs=89.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|+||++++++|+ +|++|++++|+++. +         .+     +.+|++|+++++++++.. ++|++||+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~-~---------~~-----~~~Dl~~~~~~~~~~~~~-~~d~vi~~   64 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEI-Q---------GG-----YKLDLTDFPRLEDFIIKK-RPDVIINA   64 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCC-T---------TC-----EECCTTSHHHHHHHHHHH-CCSEEEEC
T ss_pred             EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcC-C---------CC-----ceeccCCHHHHHHHHHhc-CCCEEEEC
Confidence            69999999999999999999 58999999998742 0         12     789999999999998866 69999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ||....    +.+.++++..+++|+.++..+++++.+    . +   .++|++||.+..
T Consensus        65 a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~---~~iv~~SS~~~~  111 (273)
T 2ggs_A           65 AAMTDV----DKCEIEKEKAYKINAEAVRHIVRAGKV----I-D---SYIVHISTDYVF  111 (273)
T ss_dssp             CCCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHH----T-T---CEEEEEEEGGGS
T ss_pred             CcccCh----hhhhhCHHHHHHHhHHHHHHHHHHHHH----h-C---CeEEEEecceeE
Confidence            996442    123466888999999999999998743    1 1   289999998653

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.58  E-value=1e-15  Score=117.33  Aligned_cols=116  Identities=17%  Similarity=0.201  Sum_probs=88.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      |++|||||+|+||++++++|+++|++|++++|+.+...+.       ....+..+.+|++|.+ +.+.++   . |++||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------~~~~~~~~~~Dl~d~~-~~~~~~---~-d~vih   68 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF-------VNPSAELHVRDLKDYS-WGAGIK---G-DVVFH   68 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG-------SCTTSEEECCCTTSTT-TTTTCC---C-SEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh-------cCCCceEEECccccHH-HHhhcC---C-CEEEE
Confidence            4799999999999999999999999999999976532211       1345678899999987 655544   3 99999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +|+....    +.+.++++..+++|+.++.++++++..    .+   ..+||++||.+.
T Consensus        69 ~A~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~---~~~iv~~SS~~v  116 (312)
T 3ko8_A           69 FAANPEV----RLSTTEPIVHFNENVVATFNVLEWARQ----TG---VRTVVFASSSTV  116 (312)
T ss_dssp             CCSSCSS----SGGGSCHHHHHHHHHHHHHHHHHHHHH----HT---CCEEEEEEEGGG
T ss_pred             CCCCCCc----hhhhhCHHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEeCcHHH
Confidence            9995332    234556778899999999999998733    22   238999999753

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.58  E-value=8.1e-15  Score=111.45  Aligned_cols=107  Identities=19%  Similarity=0.242  Sum_probs=87.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+.++++||||+|+||++++++|+++|++|++++|+                      .+|++|.+++++++++. ++|+
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------------~~Dl~d~~~~~~~~~~~-~~d~   66 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ----------------------DLDITNVLAVNKFFNEK-KPNV   66 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT----------------------TCCTTCHHHHHHHHHHH-CCSE
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc----------------------cCCCCCHHHHHHHHHhc-CCCE
Confidence            357899999999999999999999999999999986                      27999999999988765 6899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +||+||....    +.+.++++..+++|+.++..+++++.+.      + . ++|++||.+.
T Consensus        67 vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~------~-~-~iv~~SS~~v  116 (292)
T 1vl0_A           67 VINCAAHTAV----DKCEEQYDLAYKINAIGPKNLAAAAYSV------G-A-EIVQISTDYV  116 (292)
T ss_dssp             EEECCCCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHHH------T-C-EEEEEEEGGG
T ss_pred             EEECCccCCH----HHHhcCHHHHHHHHHHHHHHHHHHHHHc------C-C-eEEEechHHe
Confidence            9999996432    1234667889999999999999987542      1 2 8999999753

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.58  E-value=5e-15  Score=113.46  Aligned_cols=118  Identities=15%  Similarity=0.179  Sum_probs=92.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +|+++||||+|+||++++++|+++  |++|++++|+.+..+     +.    ..+.++.+|++|.+++++++++. ++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~----~~~~~~~~D~~d~~~~~~~~~~~-~~d~   71 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VV----NSGPFEVVNALDFNQIEHLVEVH-KITD   71 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HH----HSSCEEECCTTCHHHHHHHHHHT-TCCE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----cc----CCCceEEecCCCHHHHHHHHhhc-CCCE
Confidence            478999999999999999999999  899999999865421     11    12456889999999999988765 6899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +||+||....     ...++++..+++|+.++..+++++.+    .+   ..++|++||.+.
T Consensus        72 vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~~v~~SS~~~  121 (312)
T 2yy7_A           72 IYLMAALLSA-----TAEKNPAFAWDLNMNSLFHVLNLAKA----KK---IKKIFWPSSIAV  121 (312)
T ss_dssp             EEECCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHT----TS---CSEEECCEEGGG
T ss_pred             EEECCccCCC-----chhhChHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEeccHHH
Confidence            9999986432     12345677899999999999998743    21   348999999754

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.58  E-value=5.3e-14  Score=114.35  Aligned_cols=124  Identities=16%  Similarity=0.213  Sum_probs=93.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHc---CCeEEEEecChhHHHHHHHHHH---------------hhcCceEEEEEe
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKE---GARVSILARSGEKLEEAKQSIQ---------------LATGIEVATYSA   94 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~---g~~v~~~~r~~~~~~~~~~~~~---------------~~~~~~v~~~~~   94 (179)
                      ...++|+++||||+|+||++++++|+++   |++|++++|+++..+... ++.               .....++.++.+
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~  147 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARR-RLEKTFDSGDPELLRHFKELAADRLEVVAG  147 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHH-HHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHH-HHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence            3457899999999999999999999999   999999999876432221 111               112357899999


Q ss_pred             eCC------CHHHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEE
Q 030328           95 DVR------DFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASI  168 (179)
Q Consensus        95 D~~------~~~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~i  168 (179)
                      |++      +.+.++++++   ++|++||+||.....        .++..+++|+.++..+++++..    .   +..++
T Consensus       148 Dl~~~~~gld~~~~~~~~~---~~D~Vih~Aa~~~~~--------~~~~~~~~Nv~gt~~ll~aa~~----~---~~~~~  209 (478)
T 4dqv_A          148 DKSEPDLGLDQPMWRRLAE---TVDLIVDSAAMVNAF--------PYHELFGPNVAGTAELIRIALT----T---KLKPF  209 (478)
T ss_dssp             CTTSGGGGCCHHHHHHHHH---HCCEEEECCSSCSBS--------SCCEEHHHHHHHHHHHHHHHTS----S---SCCCE
T ss_pred             ECCCcccCCCHHHHHHHHc---CCCEEEECccccCCc--------CHHHHHHHHHHHHHHHHHHHHh----C---CCCeE
Confidence            998      6667777776   589999999976531        2234588999999999998743    1   23489


Q ss_pred             EEecccC
Q 030328          169 ALMSSQA  175 (179)
Q Consensus       169 v~iss~~  175 (179)
                      |++||.+
T Consensus       210 V~iSS~~  216 (478)
T 4dqv_A          210 TYVSTAD  216 (478)
T ss_dssp             EEEEEGG
T ss_pred             EEEeehh
Confidence            9999964

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.56  E-value=9.3e-15  Score=112.26  Aligned_cols=113  Identities=19%  Similarity=0.289  Sum_probs=89.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      ++|||||+|+||++++++|+++  |++|++++|+.+..+            .+.++.+|++|.+++++++++. ++|++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~------------~~~~~~~D~~d~~~~~~~~~~~-~~d~vi   67 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG------------GIKFITLDVSNRDEIDRAVEKY-SIDAIF   67 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT------------TCCEEECCTTCHHHHHHHHHHT-TCCEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc------------CceEEEecCCCHHHHHHHHhhc-CCcEEE
Confidence            4899999999999999999999  899999998754321            2456789999999999988765 699999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+|+....     ...++++..+++|+.++..+++++.+    .+   ..++|++||.+.
T Consensus        68 h~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~----~~---~~~~v~~SS~~~  115 (317)
T 3ajr_A           68 HLAGILSA-----KGEKDPALAYKVNMNGTYNILEAAKQ----HR---VEKVVIPSTIGV  115 (317)
T ss_dssp             ECCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHH----TT---CCEEEEEEEGGG
T ss_pred             ECCcccCC-----ccccChHHHhhhhhHHHHHHHHHHHH----cC---CCEEEEecCHHH
Confidence            99996431     12345678899999999999998743    22   348999999764

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.56  E-value=1e-14  Score=113.93  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=88.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGP  111 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~  111 (179)
                      +++++++||||+|+||++++++|+++| ++|++++|+++...     .....+..   +.+|+++.+.++++++.  +++
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~  115 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-----FVNLVDLN---IADYMDKEDFLIQIMAGEEFGD  115 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-----GGGTTTSC---CSEEEEHHHHHHHHHTTCCCSS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-----hhcccCce---EeeecCcHHHHHHHHhhcccCC
Confidence            567899999999999999999999999 99999999765321     11111222   67899999888888764  346


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +|++||+||....      +.++++..+++|+.++..+++++.+.      + . ++|++||.+.
T Consensus       116 ~d~Vih~A~~~~~------~~~~~~~~~~~n~~~~~~ll~a~~~~------~-~-r~V~~SS~~v  166 (357)
T 2x6t_A          116 VEAIFHEGACSST------TEWDGKYMMDNNYQYSKELLHYCLER------E-I-PFLYASSAAT  166 (357)
T ss_dssp             CCEEEECCSCCCT------TCCCHHHHHHHTHHHHHHHHHHHHHH------T-C-CEEEEEEGGG
T ss_pred             CCEEEECCcccCC------ccCCHHHHHHHHHHHHHHHHHHHHHc------C-C-eEEEEcchHH
Confidence            9999999996543      22345778999999999999988541      1 3 8999999754

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.55  E-value=1.2e-14  Score=112.67  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=90.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc---C---CeEEEEecChhHH-HHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKE---G---ARVSILARSGEKL-EEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~---g---~~v~~~~r~~~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +++||||+|+||++++++|+++   |   ++|++++|+.... .+..+++.  .+.++.++.+|++|.+++++++   .+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~---~~   76 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD--ADPRLRFVHGDIRDAGLLAREL---RG   76 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT--TCTTEEEEECCTTCHHHHHHHT---TT
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcc--cCCCeEEEEcCCCCHHHHHHHh---cC
Confidence            6999999999999999999997   8   9999999864210 00011111  1346788999999999888877   47


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|++||+||....    +.+.++++..+++|+.++..+++++.+.    +   ..+||++||.+
T Consensus        77 ~d~Vih~A~~~~~----~~~~~~~~~~~~~Nv~~~~~l~~a~~~~----~---~~~~v~~SS~~  129 (337)
T 1r6d_A           77 VDAIVHFAAESHV----DRSIAGASVFTETNVQGTQTLLQCAVDA----G---VGRVVHVSTNQ  129 (337)
T ss_dssp             CCEEEECCSCCCH----HHHHHCCHHHHHHHTHHHHHHHHHHHHT----T---CCEEEEEEEGG
T ss_pred             CCEEEECCCccCc----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----C---CCEEEEecchH
Confidence            9999999996432    1233456778999999999999988553    2   23999999964

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.55  E-value=1.1e-15  Score=111.10  Aligned_cols=113  Identities=13%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++++||||+|+||++++++|+++|+  +|++++|+++.           ...++..+.+|+++.+++++.+     +|
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-----------~~~~~~~~~~D~~~~~~~~~~~-----~d   67 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-----------EHPRLDNPVGPLAELLPQLDGS-----ID   67 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-----------CCTTEECCBSCHHHHGGGCCSC-----CS
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-----------cCCCceEEeccccCHHHHHHhh-----hc
Confidence            468999999999999999999999998  99999998764           1234667788888776554443     89


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++||+||....      +.++++..+++|+.++..+++++.+    .+   ..++|++||....
T Consensus        68 ~vi~~a~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~~v~~Ss~~~~  118 (215)
T 2a35_A           68 TAFCCLGTTIK------EAGSEEAFRAVDFDLPLAVGKRALE----MG---ARHYLVVSALGAD  118 (215)
T ss_dssp             EEEECCCCCHH------HHSSHHHHHHHHTHHHHHHHHHHHH----TT---CCEEEEECCTTCC
T ss_pred             EEEECeeeccc------cCCCHHHHHHhhHHHHHHHHHHHHH----cC---CCEEEEECCcccC
Confidence            99999995431      1345677899999999999988633    22   2389999997653

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.55  E-value=2.8e-14  Score=109.53  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=86.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +++++||||+|.||++++++|.++|++|++++|++...+     +.     .+.++.+|++ .+++.++++   ++|++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~-----~~~~~~~Dl~-~~~~~~~~~---~~d~Vi   67 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-----IN-----DYEYRVSDYT-LEDLINQLN---DVDAVV   67 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------------CCEEEECCCC-HHHHHHHTT---TCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-----CC-----ceEEEEcccc-HHHHHHhhc---CCCEEE
Confidence            478999999999999999999999999999999843322     11     4678899999 988888876   799999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+|+.....        +.+..+++|+.++..+++++..    .+   ..++|++||.+
T Consensus        68 h~a~~~~~~--------~~~~~~~~n~~~~~~ll~a~~~----~~---~~r~v~~SS~~  111 (311)
T 3m2p_A           68 HLAATRGSQ--------GKISEFHDNEILTQNLYDACYE----NN---ISNIVYASTIS  111 (311)
T ss_dssp             ECCCCCCSS--------SCGGGTHHHHHHHHHHHHHHHH----TT---CCEEEEEEEGG
T ss_pred             EccccCCCC--------ChHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEEccHH
Confidence            999976543        2344688999999998888732    22   34899999954

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.55  E-value=5.5e-15  Score=113.49  Aligned_cols=115  Identities=14%  Similarity=0.171  Sum_probs=85.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      |++|||||+|+||++++++|+++| .+++++++ ....+        .....+..+.+|+++ +++.++++   ++|++|
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~--------~~~~~~~~~~~Dl~~-~~~~~~~~---~~d~vi   68 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE--------FVNEAARLVKADLAA-DDIKDYLK---GAEEVW   68 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG--------GSCTTEEEECCCTTT-SCCHHHHT---TCSEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh--------hcCCCcEEEECcCCh-HHHHHHhc---CCCEEE
Confidence            579999999999999999999999 55545443 32211        113457888999999 88888776   699999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+|+....    ..+.++++..+++|+.++..+++++.    +.+   ..++|++||.+.
T Consensus        69 h~a~~~~~----~~~~~~~~~~~~~nv~~~~~l~~~~~----~~~---~~~iv~~SS~~v  117 (313)
T 3ehe_A           69 HIAANPDV----RIGAENPDEIYRNNVLATYRLLEAMR----KAG---VSRIVFTSTSTV  117 (313)
T ss_dssp             ECCCCCCC----C-CCCCHHHHHHHHHHHHHHHHHHHH----HHT---CCEEEEECCGGG
T ss_pred             ECCCCCCh----hhhhhCHHHHHHHHHHHHHHHHHHHH----HcC---CCeEEEeCchHH
Confidence            99985332    23455677889999999999998753    233   239999999653

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.54  E-value=2.1e-14  Score=111.31  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=89.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhhCCCcEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEAGPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~~~id~l  115 (179)
                      ++++||||+|+||++++++|+++ |++|++++|+.+..+..    .  ....+.++.+|+++ .+.++++++   ++|++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~--~~~~~~~~~~D~~~~~~~~~~~~~---~~d~v   71 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----L--NHPHFHFVEGDISIHSEWIEYHVK---KCDVV   71 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG----T--TCTTEEEEECCTTTCSHHHHHHHH---HCSEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh----h--cCCCeEEEeccccCcHHHHHhhcc---CCCEE
Confidence            47999999999999999999998 89999999987653321    1  13457888999998 456777776   58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||+||...+..    ..++++..+++|+.++..+++++..    .+    .++|++||.+
T Consensus        72 ih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~----~~~v~~SS~~  119 (345)
T 2bll_A           72 LPLVAIATPIE----YTRNPLRVFELDFEENLRIIRYCVK----YR----KRIIFPSTSE  119 (345)
T ss_dssp             EECBCCCCHHH----HHHSHHHHHHHHTHHHHHHHHHHHH----TT----CEEEEECCGG
T ss_pred             EEcccccCccc----hhcCHHHHHHHHHHHHHHHHHHHHH----hC----CeEEEEecHH
Confidence            99999644211    1245667899999999998887733    22    3999999964

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.53  E-value=1.2e-13  Score=108.07  Aligned_cols=136  Identities=17%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHH-HcCCeEEEEecChhH------------HHHHHHHHHhhcCceEEEEEeeCCCHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAA-KEGARVSILARSGEK------------LEEAKQSIQLATGIEVATYSADVRDFDA  101 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~-~~g~~v~~~~r~~~~------------~~~~~~~~~~~~~~~v~~~~~D~~~~~~  101 (179)
                      ...|++||||||+|+|+|.+..++ ..|+.+++++++.+.            .+...+++ ...|.+...+.+|+++.+.
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i-~~~G~~a~~i~~Dv~d~e~  126 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAA-KREGLYSVTIDGDAFSDEI  126 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHH-HHHTCCEEEEESCTTSHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHH-HHcCCCceeEeCCCCCHHH
Confidence            467999999999999999999999 689999988875432            22333333 3347889999999999999


Q ss_pred             HHHHHHh----hCCCcEEEecCCCCCCC-------------C---------------------cccCCHHHHHHHHHh--
Q 030328          102 VKTALDE----AGPVDVLVVNQGVFVPG-------------E---------------------LEVQSLDEVRLMIDV--  141 (179)
Q Consensus       102 v~~~~~~----~~~id~li~~ag~~~~~-------------~---------------------~~~~~~~~~~~~~~~--  141 (179)
                      +++++++    +|++|+||||++.....             |                     +...+.++++.+..+  
T Consensus       127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg  206 (401)
T 4ggo_A          127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG  206 (401)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence            8887765    58999999999865210             1                     112345665555544  


Q ss_pred             -hhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          142 -NIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       142 -n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                       ..++.+...+...+.|.+     .++++.+|+..+
T Consensus       207 ~s~~s~w~~al~~a~lla~-----G~siva~SYiGs  237 (401)
T 4ggo_A          207 GEDWERWIKQLSKEGLLEE-----GCITLAYSYIGP  237 (401)
T ss_dssp             SHHHHHHHHHHHHTTCEEE-----EEEEEEEECCCC
T ss_pred             hhHHHHHHHHHHhhhcccC-----CceEEEEeccCc
Confidence             455555556666565532     248999988654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.52  E-value=4.4e-15  Score=113.30  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=84.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++++|+++||||+||+|+++++.|+++|++|++++|+.++.++..+++....  .+..+.+|+++.+++++.++   .+|
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~--~~~~~~~D~~~~~~~~~~~~---~~D  190 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVK---GAH  190 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTT---TCS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEecCCCHHHHHHHHH---hCC
Confidence            3678999999999999999999999999999999999888887777665432  24557789999998887776   489


Q ss_pred             EEEecCCCCCC-CCcccCCH-HHHHHHHHhhhhHHH
Q 030328          114 VLVVNQGVFVP-GELEVQSL-DEVRLMIDVNIIGSF  147 (179)
Q Consensus       114 ~li~~ag~~~~-~~~~~~~~-~~~~~~~~~n~~~~~  147 (179)
                      ++|||+|.... .+..+.+. +.++.++++|+.+++
T Consensus       191 vlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          191 FVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             EEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             EEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence            99999986432 22223333 555667888888876

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.51  E-value=1.6e-14  Score=112.94  Aligned_cols=102  Identities=17%  Similarity=0.074  Sum_probs=83.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcC-----CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEG-----ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g-----~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +|+++||||+|+||++++++|.++|     ++|++++|+++...        ....++..+.+|++|.++++++++..++
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW--------HEDNPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC--------CCSSCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc--------cccCceEEEEeecCCHHHHHHHHhcCCC
Confidence            4789999999999999999999999     99999999865422        1134577889999999999998886545


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcH
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP  155 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  155 (179)
                      +|++||+||...         ++.+..+++|+.++..+++++.+
T Consensus        73 ~d~vih~a~~~~---------~~~~~~~~~n~~~~~~l~~a~~~  107 (364)
T 2v6g_A           73 VTHVFYVTWANR---------STEQENCEANSKMFRNVLDAVIP  107 (364)
T ss_dssp             CCEEEECCCCCC---------SSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCc---------chHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999642         23466789999999999998854

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.51  E-value=1.3e-13  Score=105.96  Aligned_cols=109  Identities=18%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++++++||||+|+||++++++|+++|++|++++|+.                     .+|++|.+++++++++. ++|++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~---------------------~~D~~d~~~~~~~~~~~-~~d~v   59 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------------ELNLLDSRAVHDFFASE-RIDQV   59 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------------TCCTTCHHHHHHHHHHH-CCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc---------------------cCCccCHHHHHHHHHhc-CCCEE
Confidence            467899999999999999999999999999888762                     26999999999988766 58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ||+|+.....   ....++.+..+++|+.++..+++++..    .+   ..++|++||.+.
T Consensus        60 ih~a~~~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~~v~~SS~~v  110 (321)
T 1e6u_A           60 YLAAAKVGGI---VANNTYPADFIYQNMMIESNIIHAAHQ----ND---VNKLLFLGSSCI  110 (321)
T ss_dssp             EECCCCCCCH---HHHHHCHHHHHHHHHHHHHHHHHHHHH----TT---CCEEEEECCGGG
T ss_pred             EEcCeecCCc---chhhhCHHHHHHHHHHHHHHHHHHHHH----hC---CCeEEEEccHHH
Confidence            9999964321   112345567899999999999988743    22   238999999753

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.50  E-value=3.6e-14  Score=107.56  Aligned_cols=103  Identities=18%  Similarity=0.237  Sum_probs=85.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|+||++++++|.++|++|++++|.                      .+|++|.++++++++.. ++|++||+
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------------~~D~~d~~~~~~~~~~~-~~d~vi~~   63 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK----------------------LLDITNISQVQQVVQEI-RPHIIIHC   63 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT----------------------TSCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc----------------------ccCCCCHHHHHHHHHhc-CCCEEEEC
Confidence            89999999999999999999999999999992                      27999999999999876 58999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ||.....    ...++++..+++|+.++..+++++.+.    +    .++|++||.+.
T Consensus        64 a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~----~~~v~~SS~~v  109 (287)
T 3sc6_A           64 AAYTKVD----QAEKERDLAYVINAIGARNVAVASQLV----G----AKLVYISTDYV  109 (287)
T ss_dssp             CCCCCHH----HHTTCHHHHHHHHTHHHHHHHHHHHHH----T----CEEEEEEEGGG
T ss_pred             CcccChH----HHhcCHHHHHHHHHHHHHHHHHHHHHc----C----CeEEEEchhhh
Confidence            9975421    122456778999999999999987432    2    27999999753

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.48  E-value=2e-13  Score=103.35  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=83.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      |+++||||+|+||++++++|+++  |++|++++|+++..++...       ..+..+.+|++|.+++.++++   ++|++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~-------~~~~~~~~D~~d~~~l~~~~~---~~d~v   70 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD-------QGVEVRHGDYNQPESLQKAFA---GVSKL   70 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH-------TTCEEEECCTTCHHHHHHHTT---TCSEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh-------cCCeEEEeccCCHHHHHHHHh---cCCEE
Confidence            46999999999999999999999  9999999998765443211       235678899999999888876   58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ||+|+...       . +      ++|+.++.++++++.    +.+   ..+||++||...
T Consensus        71 i~~a~~~~-------~-~------~~n~~~~~~l~~a~~----~~~---~~~~v~~Ss~~~  110 (287)
T 2jl1_A           71 LFISGPHY-------D-N------TLLIVQHANVVKAAR----DAG---VKHIAYTGYAFA  110 (287)
T ss_dssp             EECCCCCS-------C-H------HHHHHHHHHHHHHHH----HTT---CSEEEEEEETTG
T ss_pred             EEcCCCCc-------C-c------hHHHHHHHHHHHHHH----HcC---CCEEEEECCCCC
Confidence            99998521       1 1      568888888888762    222   348999999754

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.47  E-value=1.1e-13  Score=116.50  Aligned_cols=121  Identities=14%  Similarity=0.150  Sum_probs=92.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH-HHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA-VKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-v~~~~~~~~~i  112 (179)
                      +++++++||||+|+||++++++|+++ |++|++++|+++..++    +  .....+.++.+|+++.++ ++++++   ++
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~----~--~~~~~v~~v~~Dl~d~~~~~~~~~~---~~  383 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR----F--LNHPHFHFVEGDISIHSEWIEYHVK---KC  383 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG----G--TTCTTEEEEECCTTTCHHHHHHHHH---HC
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh----h--ccCCceEEEECCCCCcHHHHHHhhc---CC
Confidence            46789999999999999999999998 8999999998754321    1  113457888999998765 666766   58


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |++||+||......    ..++++..+++|+.++..+++++..    .+    .++|++||.+.
T Consensus       384 D~Vih~Aa~~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~----~~----~r~V~~SS~~v  435 (660)
T 1z7e_A          384 DVVLPLVAIATPIE----YTRNPLRVFELDFEENLRIIRYCVK----YR----KRIIFPSTSEV  435 (660)
T ss_dssp             SEEEECCCCCCTHH----HHHSHHHHHHHHTHHHHHHHHHHHH----TT----CEEEEECCGGG
T ss_pred             CEEEECceecCccc----cccCHHHHHHhhhHHHHHHHHHHHH----hC----CEEEEEecHHH
Confidence            99999999654321    2345677899999999999888743    22    39999999653

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.47  E-value=7.8e-14  Score=106.23  Aligned_cols=106  Identities=18%  Similarity=0.181  Sum_probs=84.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++||||+|+||++++++|. +|++|++++|+++                  .+.+|++|.++++++++.. ++|++||+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~------------------~~~~D~~d~~~~~~~~~~~-~~d~vih~   61 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK------------------EFCGDFSNPKGVAETVRKL-RPDVIVNA   61 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS------------------SSCCCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc------------------cccccCCCHHHHHHHHHhc-CCCEEEEC
Confidence            69999999999999999999 8999999999751                  2468999999999988865 58999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ||.....    .+.++++..+++|+.++..+++++..      .+  .++|++||.+.
T Consensus        62 a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~------~~--~~~v~~SS~~v  107 (299)
T 1n2s_A           62 AAHTAVD----KAESEPELAQLLNATSVEAIAKAANE------TG--AWVVHYSTDYV  107 (299)
T ss_dssp             CCCCCHH----HHTTCHHHHHHHHTHHHHHHHHHHTT------TT--CEEEEEEEGGG
T ss_pred             cccCCHh----hhhcCHHHHHHHHHHHHHHHHHHHHH------cC--CcEEEEecccE
Confidence            9964321    12234567899999999999998732      12  28999999753

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.47  E-value=2.4e-14  Score=108.67  Aligned_cols=110  Identities=21%  Similarity=0.185  Sum_probs=84.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++++++|||+ |+||++++++|.++|++|++++|+++..           ...+.++.+|++|.++++++++.  ++|++
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~--~~d~v   67 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPM-----------PAGVQTLIADVTRPDTLASIVHL--RPEIL   67 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCC-----------CTTCCEEECCTTCGGGCTTGGGG--CCSEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcccc-----------ccCCceEEccCCChHHHHHhhcC--CCCEE
Confidence            4578999995 9999999999999999999999987541           24567789999999888877763  69999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||+|+..         .++.+..+++|+.++..+++++..    .   +..++|++||.+
T Consensus        68 ih~a~~~---------~~~~~~~~~~n~~~~~~ll~a~~~----~---~~~~~v~~SS~~  111 (286)
T 3gpi_A           68 VYCVAAS---------EYSDEHYRLSYVEGLRNTLSALEG----A---PLQHVFFVSSTG  111 (286)
T ss_dssp             EECHHHH---------HHC-----CCSHHHHHHHHHHTTT----S---CCCEEEEEEEGG
T ss_pred             EEeCCCC---------CCCHHHHHHHHHHHHHHHHHHHhh----C---CCCEEEEEcccE
Confidence            9999842         234566789999999999988731    2   234899999974

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.46  E-value=1.8e-13  Score=104.51  Aligned_cols=115  Identities=15%  Similarity=0.175  Sum_probs=86.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDVL  115 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~l  115 (179)
                      +++||||+|+||++++++|+++| ++|++++|+++...  ...+.   +..   +.+|+++.+.++++++..  +++|++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~---~~~---~~~d~~~~~~~~~~~~~~~~~~~d~v   72 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV---DLN---IADYMDKEDFLIQIMAGEEFGDVEAI   72 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH---TSC---CSEEEEHHHHHHHHHTTCCCSSCCEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC---cce---eccccccHHHHHHHHhccccCCCcEE
Confidence            48999999999999999999999 99999998765321  01111   222   568999988888887641  369999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||+||....      +.++++..+++|+.++..+++++.+.      + . ++|++||.+
T Consensus        73 i~~a~~~~~------~~~~~~~~~~~n~~~~~~l~~a~~~~------~-~-~~v~~SS~~  118 (310)
T 1eq2_A           73 FHEGACSST------TEWDGKYMMDNNYQYSKELLHYCLER------E-I-PFLYASSAA  118 (310)
T ss_dssp             EECCSCCCT------TCCCHHHHHHHTHHHHHHHHHHHHHH------T-C-CEEEEEEGG
T ss_pred             EECcccccC------cccCHHHHHHHHHHHHHHHHHHHHHc------C-C-eEEEEeeHH
Confidence            999996543      22345678999999999999987432      2 3 899999974

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.45  E-value=9.2e-14  Score=107.98  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=85.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++++++||||+|+||++++++|+++|++|++++|+.+...+..+.+  ....++.++.+|+.+..        ..++|
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~--------~~~~d   93 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW--IGHENFELINHDVVEPL--------YIEVD   93 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG--TTCTTEEEEECCTTSCC--------CCCCS
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh--ccCCceEEEeCccCChh--------hcCCC
Confidence            467899999999999999999999999999999998643211111111  11345788889998742        34799


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|||+||.......    .++++..+++|+.++..+++++...    +    .++|++||.+
T Consensus        94 ~vih~A~~~~~~~~----~~~~~~~~~~n~~~~~~l~~a~~~~----~----~~~v~~SS~~  143 (343)
T 2b69_A           94 QIYHLASPASPPNY----MYNPIKTLKTNTIGTLNMLGLAKRV----G----ARLLLASTSE  143 (343)
T ss_dssp             EEEECCSCCSHHHH----TTCHHHHHHHHHHHHHHHHHHHHHH----T----CEEEEEEEGG
T ss_pred             EEEECccccCchhh----hhCHHHHHHHHHHHHHHHHHHHHHh----C----CcEEEECcHH
Confidence            99999996442111    1234567899999999999987432    1    2899999864

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=104.07  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=82.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++++++|||||+|+||++++++|.++|+      +..            .....+..+.+|++|.++++++++.. ++|+
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~------------~~~~~~~~~~~D~~d~~~~~~~~~~~-~~d~   64 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPG------------EDWVFVSSKDADLTDTAQTRALFEKV-QPTH   64 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT------------CEEEECCTTTCCTTSHHHHHHHHHHS-CCSE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc------------ccccccCceecccCCHHHHHHHHhhc-CCCE
Confidence            5789999999999999999999999997      110            00112333468999999999999875 6999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |||+|+......   .+.++....+++|+.++..+++++..    .+   ..++|++||.+
T Consensus        65 Vih~A~~~~~~~---~~~~~~~~~~~~nv~gt~~ll~a~~~----~~---~~~~v~~SS~~  115 (319)
T 4b8w_A           65 VIHLAAMVGGLF---RNIKYNLDFWRKNVHMNDNVLHSAFE----VG---ARKVVSCLSTC  115 (319)
T ss_dssp             EEECCCCCCCHH---HHTTCHHHHHHHHHHHHHHHHHHHHH----TT---CSEEEEECCGG
T ss_pred             EEECceeccccc---ccccCHHHHHHHHHHHHHHHHHHHHH----cC---CCeEEEEcchh
Confidence            999999743211   12234556799999999999988632    22   34899999974

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.41  E-value=3.2e-13  Score=110.40  Aligned_cols=122  Identities=14%  Similarity=0.136  Sum_probs=89.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH---HHHHHHHH--------hhcCceEEEEEeeCCCHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL---EEAKQSIQ--------LATGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~---~~~~~~~~--------~~~~~~v~~~~~D~~~~~~v~~  104 (179)
                      ..++++||||+|.||++++++|.++|++|++++|++...   +...+.+.        .....++.++.+|+++++.+. 
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence            358999999999999999999999999999999987632   22222221        122467899999999977766 


Q ss_pred             HHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          105 ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       105 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                         ...++|+|||+|+....       .+.++...++|+.++..+++.+.+    .    ..+++++||.+.
T Consensus       228 ---~~~~~D~Vih~Aa~~~~-------~~~~~~~~~~Nv~gt~~ll~~a~~----~----~~~~v~iSS~~v  281 (508)
T 4f6l_B          228 ---LPENMDTIIHAGARTDH-------FGDDDEFEKVNVQGTVDVIRLAQQ----H----HARLIYVSTISV  281 (508)
T ss_dssp             ---CSSCCSEEEECCCC---------------CCHHHHHHHHHHHHHHHHT----T----TCEEEEEEESCT
T ss_pred             ---CccCCCEEEECCceecC-------CCCHHHHhhhHHHHHHHHHHHHHh----C----CCcEEEeCChhh
Confidence               44589999999996531       234566789999999999998743    1    238999999764

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.40  E-value=3.2e-12  Score=96.98  Aligned_cols=106  Identities=19%  Similarity=0.205  Sum_probs=79.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           39 HVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +++||||+|+||++++++|.++ |++|++++|++++.+..       ....+..+.+|++|++++.++++   ++|++||
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------~~~~v~~~~~D~~d~~~l~~~~~---~~d~vi~   71 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------WRGKVSVRQLDYFNQESMVEAFK---GMDTVVF   71 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------GBTTBEEEECCTTCHHHHHHHTT---TCSEEEE
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------hhCCCEEEEcCCCCHHHHHHHHh---CCCEEEE
Confidence            5999999999999999999998 99999999998753321       12457888999999999888876   6899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +||....       .       ..|+.++..+++    .+++.+   ..+||++||..
T Consensus        72 ~a~~~~~-------~-------~~~~~~~~~l~~----aa~~~g---v~~iv~~Ss~~  108 (289)
T 3e48_A           72 IPSIIHP-------S-------FKRIPEVENLVY----AAKQSG---VAHIIFIGYYA  108 (289)
T ss_dssp             CCCCCCS-------H-------HHHHHHHHHHHH----HHHHTT---CCEEEEEEESC
T ss_pred             eCCCCcc-------c-------hhhHHHHHHHHH----HHHHcC---CCEEEEEcccC
Confidence            9985432       1       124555544444    444443   34999999864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.39  E-value=2.2e-12  Score=100.45  Aligned_cols=99  Identities=20%  Similarity=0.270  Sum_probs=74.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +..++++||||+|.||++++++|.++|++|++++|++....+..+.+.......+..+.+|++|.+++.+++++. ++|+
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d~   86 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH-EIDI   86 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT-TCCE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC-CCCE
Confidence            346789999999999999999999999999999997621111111111111245778899999999999999876 5999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      |||+++.                   .|+.++..+++++
T Consensus        87 Vi~~a~~-------------------~n~~~~~~l~~aa  106 (346)
T 3i6i_A           87 VVSTVGG-------------------ESILDQIALVKAM  106 (346)
T ss_dssp             EEECCCG-------------------GGGGGHHHHHHHH
T ss_pred             EEECCch-------------------hhHHHHHHHHHHH
Confidence            9999985                   2777777777765

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.37  E-value=2.3e-12  Score=97.37  Aligned_cols=105  Identities=22%  Similarity=0.204  Sum_probs=75.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +++||||+|+||++++++|.++  |++|++++|++++.+....       ..+..+.+|++|.++++++++   ++|++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~---~~d~vi   70 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA-------QGITVRQADYGDEAALTSALQ---GVEKLL   70 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH-------TTCEEEECCTTCHHHHHHHTT---TCSEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc-------CCCeEEEcCCCCHHHHHHHHh---CCCEEE
Confidence            4899999999999999999998  9999999998765433211       235678999999999888876   589999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+|+...                +.|+.++..+++++    .+.+   ..+||++||...
T Consensus        71 ~~a~~~~----------------~~~~~~~~~l~~a~----~~~~---~~~~v~~Ss~~~  107 (286)
T 2zcu_A           71 LISSSEV----------------GQRAPQHRNVINAA----KAAG---VKFIAYTSLLHA  107 (286)
T ss_dssp             ECC------------------------CHHHHHHHHH----HHHT---CCEEEEEEETTT
T ss_pred             EeCCCCc----------------hHHHHHHHHHHHHH----HHcC---CCEEEEECCCCC
Confidence            9998421                12566666666654    3333   238999999764

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.36  E-value=1.1e-11  Score=97.01  Aligned_cols=111  Identities=16%  Similarity=0.170  Sum_probs=79.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEee-CCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD-VRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D-~~~~~~v~~~~~~~~~id~  114 (179)
                      .+++++||||+|+||++++++|+++|++|++++|+++...  .+++..  ...+..+.+| ++|.+++.++++   .+|+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~--~~~v~~v~~D~l~d~~~l~~~~~---~~d~   76 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA--IPNVTLFQGPLLNNVPLMDTLFE---GAHL   76 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT--STTEEEEESCCTTCHHHHHHHHT---TCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh--cCCcEEEECCccCCHHHHHHHHh---cCCE
Confidence            4678999999999999999999999999999999876542  122221  2347778999 999999988876   5899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|||++....               +.|..+ ..+++    .+++.+  ...+||++||..
T Consensus        77 Vi~~a~~~~~---------------~~~~~~-~~l~~----aa~~~g--~v~~~V~~SS~~  115 (352)
T 1xgk_A           77 AFINTTSQAG---------------DEIAIG-KDLAD----AAKRAG--TIQHYIYSSMPD  115 (352)
T ss_dssp             EEECCCSTTS---------------CHHHHH-HHHHH----HHHHHS--CCSEEEEEECCC
T ss_pred             EEEcCCCCCc---------------HHHHHH-HHHHH----HHHHcC--CccEEEEeCCcc
Confidence            9999874310               123333 34344    444433  023999999975

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.36  E-value=2.8e-12  Score=97.77  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=78.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +|+++||||+|++|++++++|+++| ++|++++|+++....  +.+..   ..+..+.+|++|++++.+.++   ++|++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~---~~~~~~~~D~~d~~~l~~~~~---~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL---QGAEVVQGDQDDQVIMELALN---GAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH---TTCEEEECCTTCHHHHHHHHT---TCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH---CCCEEEEecCCCHHHHHHHHh---cCCEE
Confidence            5799999999999999999999999 999999998765321  12221   236678899999999988886   58999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ||+++....     ..       .+.|+.++..+    ++.+++.+   ..+||++|+.
T Consensus        77 i~~a~~~~~-----~~-------~~~~~~~~~~~----~~aa~~~g---v~~iv~~S~~  116 (299)
T 2wm3_A           77 FIVTNYWES-----CS-------QEQEVKQGKLL----ADLARRLG---LHYVVYSGLE  116 (299)
T ss_dssp             EECCCHHHH-----TC-------HHHHHHHHHHH----HHHHHHHT---CSEEEECCCC
T ss_pred             EEeCCCCcc-----cc-------chHHHHHHHHH----HHHHHHcC---CCEEEEEcCc
Confidence            999984211     01       23344444444    44444443   2389986653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.35  E-value=8.4e-12  Score=95.52  Aligned_cols=95  Identities=21%  Similarity=0.306  Sum_probs=71.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-----hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-----EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-----~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .++++||||+|++|++++++|+++|++|++++|+.     +..+.. +++.   ...+..+.+|++|++++.++++   +
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~---~~~~~~~~~D~~d~~~l~~~~~---~   76 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFK---QLGAKLIEASLDDHQRLVDALK---Q   76 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHH---TTTCEEECCCSSCHHHHHHHHT---T
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHH---hCCeEEEeCCCCCHHHHHHHHh---C
Confidence            46799999999999999999999999999999984     222221 2221   2346788999999999988886   5


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      +|++||+++.....               .|+.++..+++++
T Consensus        77 ~d~vi~~a~~~~~~---------------~~~~~~~~l~~aa  103 (313)
T 1qyd_A           77 VDVVISALAGGVLS---------------HHILEQLKLVEAI  103 (313)
T ss_dssp             CSEEEECCCCSSSS---------------TTTTTHHHHHHHH
T ss_pred             CCEEEECCccccch---------------hhHHHHHHHHHHH
Confidence            89999999864321               2566666666654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.34  E-value=2.1e-12  Score=105.85  Aligned_cols=110  Identities=20%  Similarity=0.114  Sum_probs=80.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      ++++|||||+|.||++++++|.++|++|++++|+.+..+               .+..|+.+.  +   .+...++|+||
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~---------------~v~~d~~~~--~---~~~l~~~D~Vi  206 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG---------------KRFWDPLNP--A---SDLLDGADVLV  206 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT---------------CEECCTTSC--C---TTTTTTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc---------------ceeecccch--h---HHhcCCCCEEE
Confidence            679999999999999999999999999999999875321               145676542  1   22235799999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+||.....   ..+.+..+..+++|+.++..+++++.   .+.   +..++|++||..
T Consensus       207 h~A~~~~~~---~~~~~~~~~~~~~Nv~gt~~ll~a~a---~~~---~~~r~V~~SS~~  256 (516)
T 3oh8_A          207 HLAGEPIFG---RFNDSHKEAIRESRVLPTKFLAELVA---EST---QCTTMISASAVG  256 (516)
T ss_dssp             ECCCC--------CCGGGHHHHHHHTHHHHHHHHHHHH---HCS---SCCEEEEEEEGG
T ss_pred             ECCCCcccc---ccchhHHHHHHHHHHHHHHHHHHHHH---hcC---CCCEEEEeCcce
Confidence            999975433   23456677889999999999999742   111   244899999864

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.32  E-value=2.6e-11  Score=92.57  Aligned_cols=79  Identities=23%  Similarity=0.401  Sum_probs=63.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-------hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-------EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-------~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +++++||||+|++|++++++|+++|++|++++|++       ++.+.. +++.   ...+..+.+|++|++++.++++  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~---~~~v~~v~~D~~d~~~l~~~~~--   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQ---SLGVILLEGDINDHETLVKAIK--   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHH---HTTCEEEECCTTCHHHHHHHHT--
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHH---hCCCEEEEeCCCCHHHHHHHHh--
Confidence            56899999999999999999999999999999986       333322 2222   1236778999999999988887  


Q ss_pred             CCCcEEEecCCCC
Q 030328          110 GPVDVLVVNQGVF  122 (179)
Q Consensus       110 ~~id~li~~ag~~  122 (179)
                       ++|++||+++..
T Consensus        76 -~~d~vi~~a~~~   87 (307)
T 2gas_A           76 -QVDIVICAAGRL   87 (307)
T ss_dssp             -TCSEEEECSSSS
T ss_pred             -CCCEEEECCccc
Confidence             589999999853

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.30  E-value=1.4e-11  Score=94.66  Aligned_cols=79  Identities=15%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .++++||||+|++|++++++|+++|++|++++|+++...+..+++..   ..+..+.+|++|.+++.++++   ++|++|
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~---~~v~~v~~Dl~d~~~l~~a~~---~~d~vi   84 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS---LGAIIVKGELDEHEKLVELMK---KVDVVI   84 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH---TTCEEEECCTTCHHHHHHHHT---TCSEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc---CCCEEEEecCCCHHHHHHHHc---CCCEEE
Confidence            46899999999999999999999999999999987522222222221   236778999999999988887   589999


Q ss_pred             ecCCC
Q 030328          117 VNQGV  121 (179)
Q Consensus       117 ~~ag~  121 (179)
                      |+++.
T Consensus        85 ~~a~~   89 (318)
T 2r6j_A           85 SALAF   89 (318)
T ss_dssp             ECCCG
T ss_pred             ECCch
Confidence            99984

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.29  E-value=2.1e-11  Score=93.76  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=62.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-h----HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-E----KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +++++||||+|++|++++++|+++|++|++++|+. .    ...+..+++.   ...+..+.+|++|.+++.++++   +
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~---~~~v~~v~~D~~d~~~l~~a~~---~   77 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR---SMGVTIIEGEMEEHEKMVSVLK---Q   77 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH---HTTCEEEECCTTCHHHHHHHHT---T
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh---cCCcEEEEecCCCHHHHHHHHc---C
Confidence            46799999999999999999999999999999986 1    1111122221   2346778999999999988887   5


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++||+++.
T Consensus        78 ~d~vi~~a~~   87 (321)
T 3c1o_A           78 VDIVISALPF   87 (321)
T ss_dssp             CSEEEECCCG
T ss_pred             CCEEEECCCc
Confidence            8999999985

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.29  E-value=1.7e-11  Score=93.63  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=63.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH--HHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL--EEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~--~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +++++||||+|++|++++++|+++|++|++++|+....  .+..+.+.......+..+.+|++|.+++.++++   ++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~---~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK---NVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH---TCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc---CCCE
Confidence            46799999999999999999999999999999984321  111111111113346778999999999988887   5899


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      +||+++.
T Consensus        81 vi~~a~~   87 (308)
T 1qyc_A           81 VISTVGS   87 (308)
T ss_dssp             EEECCCG
T ss_pred             EEECCcc
Confidence            9999984

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.27  E-value=2.5e-13  Score=104.17  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHh-hcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL-ATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++++++||||+|+||++++++|+++|++|++++|+........+.+.. .....+.++.+|++             ++|
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------------~~d   71 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-------------DVR   71 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-------------TEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-------------cCC
Confidence            4678999999999999999999999999999999976510000000000 00111222333332             689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++||+|+..........    ....++ |+.++..+++++...    +   ..++|++||.+
T Consensus        72 ~vi~~a~~~~~~~~~~~----~~~~~~-n~~~~~~ll~a~~~~----~---v~~~v~~SS~~  121 (321)
T 3vps_A           72 LVYHLASHKSVPRSFKQ----PLDYLD-NVDSGRHLLALCTSV----G---VPKVVVGSTCE  121 (321)
T ss_dssp             EEEECCCCCCHHHHTTS----TTTTHH-HHHHHHHHHHHHHHH----T---CCEEEEEEEGG
T ss_pred             EEEECCccCChHHHHhC----HHHHHH-HHHHHHHHHHHHHHc----C---CCeEEEecCHH
Confidence            99999997543111111    122456 999999988887432    2   23899999975

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.24  E-value=4.7e-11  Score=93.65  Aligned_cols=96  Identities=21%  Similarity=0.174  Sum_probs=74.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      ++++||||+|.||++++++|+++|+ +|+..+|+                          +|.++++++++   ++|++|
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~--------------------------~d~~~l~~~~~---~~d~Vi   51 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ--------------------------TKEEELESALL---KADFIV   51 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT--------------------------CCHHHHHHHHH---HCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC--------------------------CCHHHHHHHhc---cCCEEE
Confidence            3699999999999999999999998 77777664                          67788888887   489999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |+||...+.        +++..+++|+.++..+++++..      .+...++|++||...
T Consensus        52 h~a~~~~~~--------~~~~~~~~n~~~~~~l~~a~~~------~~~~~~~v~~Ss~~~   97 (369)
T 3st7_A           52 HLAGVNRPE--------HDKEFSLGNVSYLDHVLDILTR------NTKKPAILLSSSIQA   97 (369)
T ss_dssp             ECCCSBCTT--------CSTTCSSSCCBHHHHHHHHHTT------CSSCCEEEEEEEGGG
T ss_pred             ECCcCCCCC--------CHHHHHHHHHHHHHHHHHHHHH------hCCCCeEEEeCchhh
Confidence            999975532        2233578899999999988732      222238999999764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.23  E-value=8.5e-11  Score=88.84  Aligned_cols=71  Identities=13%  Similarity=0.076  Sum_probs=58.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .++++|||| |.||++++++|.++|++|++++|+++..+....       ..+..+.+|++|.+        ..++|++|
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~--------~~~~d~vi   68 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS--------LDGVTHLL   68 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC--------CTTCCEEE
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc--------cCCCCEEE
Confidence            478999998 999999999999999999999999876543321       34778899999833        45799999


Q ss_pred             ecCCCCC
Q 030328          117 VNQGVFV  123 (179)
Q Consensus       117 ~~ag~~~  123 (179)
                      |+|+...
T Consensus        69 ~~a~~~~   75 (286)
T 3ius_A           69 ISTAPDS   75 (286)
T ss_dssp             ECCCCBT
T ss_pred             ECCCccc
Confidence            9999654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.16  E-value=1.3e-10  Score=88.49  Aligned_cols=110  Identities=19%  Similarity=0.203  Sum_probs=76.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      ++||||||+|.||++++++|.++|++|+++.|++..             .++   ..|     +++  .+....+|.+||
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~-------------~~~---~~~-----~~~--~~~l~~~d~vih   57 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP-------------GRI---TWD-----ELA--ASGLPSCDAAVN   57 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT-------------TEE---EHH-----HHH--HHCCCSCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc-------------Cee---ecc-----hhh--HhhccCCCEEEE
Confidence            369999999999999999999999999999997532             111   111     111  123457999999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      .|+.....+....+++..+..++.|+.++-.+.+.+.    +.+. ....+++.||.+
T Consensus        58 la~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~----~~~~-~~~~~i~~Ss~~  110 (298)
T 4b4o_A           58 LAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAIT----KAPQ-PPKAWVLVTGVA  110 (298)
T ss_dssp             CCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHH----HCSS-CCSEEEEEEEGG
T ss_pred             eccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHH----HhCC-CceEEEEEeeee
Confidence            9986544344445677778889999999888777552    2222 234677777754

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.12  E-value=1.5e-10  Score=84.77  Aligned_cols=80  Identities=23%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             CcCCcEEEEEcC----------------CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC
Q 030328           34 PIKDRHVFITGG----------------SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR   97 (179)
Q Consensus        34 ~~~~k~vlItGa----------------~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~   97 (179)
                      ++.||++|||||                +|++|.++|+.|+++|++|++++++.. ++       ...+  +  ...|++
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-------~~~g--~--~~~dv~   72 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-------TPPF--V--KRVDVM   72 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-------CCTT--E--EEEECC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-------cCCC--C--eEEccC
Confidence            368999999999                689999999999999999999988652 11       0112  2  256888


Q ss_pred             CHHHHH-HHHHhhCCCcEEEecCCCCCCC
Q 030328           98 DFDAVK-TALDEAGPVDVLVVNQGVFVPG  125 (179)
Q Consensus        98 ~~~~v~-~~~~~~~~id~li~~ag~~~~~  125 (179)
                      +.+++. .+.+.++++|++|||||+....
T Consensus        73 ~~~~~~~~v~~~~~~~Dili~~Aav~d~~  101 (226)
T 1u7z_A           73 TALEMEAAVNASVQQQNIFIGCAAVADYR  101 (226)
T ss_dssp             SHHHHHHHHHHHGGGCSEEEECCBCCSEE
T ss_pred             cHHHHHHHHHHhcCCCCEEEECCcccCCC
Confidence            877654 4455678899999999986533

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.10  E-value=7.5e-10  Score=72.60  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=61.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+++++|+|+ |++|+++++.|.++| ++|++++|++++.+...       ...+..+..|+++.+++.+.++   ++|+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~---~~d~   72 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-------RMGVATKQVDAKDEAGLAKALG---GFDA   72 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-------TTTCEEEECCTTCHHHHHHHTT---TCSE
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-------hCCCcEEEecCCCHHHHHHHHc---CCCE
Confidence            4678999999 999999999999999 89999999987665443       1234567899999988877765   6899


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      +|++++
T Consensus        73 vi~~~~   78 (118)
T 3ic5_A           73 VISAAP   78 (118)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999996

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=99.02  E-value=2.7e-09  Score=84.92  Aligned_cols=83  Identities=19%  Similarity=0.289  Sum_probs=70.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC---CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG---ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++++|+|| |++|+++++.|++.|   .+|++.+|+.++.++..+++....+.++..+.+|+++.+++++++++. ++|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-KPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-CCCE
Confidence            57999999 899999999999998   489999999999888877775433346778899999999999999876 5899


Q ss_pred             EEecCCCC
Q 030328          115 LVVNQGVF  122 (179)
Q Consensus       115 li~~ag~~  122 (179)
                      |||+++..
T Consensus        80 Vin~ag~~   87 (405)
T 4ina_A           80 VLNIALPY   87 (405)
T ss_dssp             EEECSCGG
T ss_pred             EEECCCcc
Confidence            99999853

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.94  E-value=2.8e-09  Score=78.28  Aligned_cols=83  Identities=10%  Similarity=0.145  Sum_probs=59.1

Q ss_pred             CCcEEEEEcC----------------CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH
Q 030328           36 KDRHVFITGG----------------SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF   99 (179)
Q Consensus        36 ~~k~vlItGa----------------~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   99 (179)
                      .||++|||||                +|++|.++|+.++++|++|++++|+... +       ......+  ...|+.+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~-~-------~~~~~~~--~~~~v~s~   71 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL-K-------PEPHPNL--SIREITNT   71 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC-C-------CCCCTTE--EEEECCSH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc-c-------ccCCCCe--EEEEHhHH
Confidence            5899999999                7889999999999999999999997531 1       0001123  33466665


Q ss_pred             HHH-HHHHHhhCCCcEEEecCCCCCCCCcc
Q 030328          100 DAV-KTALDEAGPVDVLVVNQGVFVPGELE  128 (179)
Q Consensus       100 ~~v-~~~~~~~~~id~li~~ag~~~~~~~~  128 (179)
                      ++. +.+.+.+++.|++|+||++....+..
T Consensus        72 ~em~~~v~~~~~~~Dili~aAAvsD~~p~~  101 (232)
T 2gk4_A           72 KDLLIEMQERVQDYQVLIHSMAVSDYTPVY  101 (232)
T ss_dssp             HHHHHHHHHHGGGCSEEEECSBCCSEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEcCccccccchh
Confidence            554 44455567899999999976644443

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.89  E-value=2.2e-09  Score=83.13  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=76.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecCh--hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-------RVSILARSG--EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ++++||||+|.||.+++..|.++|.       +|.++|+.+  +..+....++.. ....+  . .|+.+.+++.+.++ 
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~-~~~~~--~-~di~~~~~~~~a~~-   79 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED-CAFPL--L-AGLEATDDPKVAFK-   79 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT-TTCTT--E-EEEEEESCHHHHTT-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhc-ccccc--c-CCeEeccChHHHhC-
Confidence            4799999999999999999999996       799999875  222222222321 11111  1 35544334444443 


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                        +.|++||.||.....   ..++   +..++.|+.++..+++++...    . +...+++++|+-
T Consensus        80 --~~D~Vih~Ag~~~~~---~~~~---~~~~~~Nv~~t~~l~~a~~~~----~-~~~~~vvv~snp  132 (327)
T 1y7t_A           80 --DADYALLVGAAPRKA---GMER---RDLLQVNGKIFTEQGRALAEV----A-KKDVKVLVVGNP  132 (327)
T ss_dssp             --TCSEEEECCCCCCCT---TCCH---HHHHHHHHHHHHHHHHHHHHH----S-CTTCEEEECSSS
T ss_pred             --CCCEEEECCCcCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh----c-CCCeEEEEeCCc
Confidence              689999999976532   1233   446899999999988876432    1 012377777763

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.86  E-value=1e-08  Score=73.50  Aligned_cols=77  Identities=29%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+||+|.++++.+...|++|+++++++++.+...     ..+.+.   ..|.++.+..+++.+..  +++|
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-----~~g~~~---~~d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-----RLGVEY---VGDSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-----TTCCSE---EEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-----HcCCCE---EeeCCcHHHHHHHHHHhCCCCCe
Confidence            6899999999999999999999999999999999877654332     123332   24776655445554432  3699


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      ++|+|+|
T Consensus       110 ~vi~~~g  116 (198)
T 1pqw_A          110 VVLNSLA  116 (198)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999997

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.81  E-value=1.2e-08  Score=80.28  Aligned_cols=78  Identities=23%  Similarity=0.242  Sum_probs=61.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++++++|+|+ |++|+++++.+...|++|+++++++++.+...+..    +..   +..|.++.+++++.++   +.|
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~----g~~---~~~~~~~~~~l~~~~~---~~D  231 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF----GGR---VITLTATEANIKKSVQ---HAD  231 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----TTS---EEEEECCHHHHHHHHH---HCS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc----Cce---EEEecCCHHHHHHHHh---CCC
Confidence            478899999999 99999999999999999999999988766543322    333   3457778888877765   589


Q ss_pred             EEEecCCCC
Q 030328          114 VLVVNQGVF  122 (179)
Q Consensus       114 ~li~~ag~~  122 (179)
                      ++|++++..
T Consensus       232 vVi~~~g~~  240 (369)
T 2eez_A          232 LLIGAVLVP  240 (369)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCC
Confidence            999999853

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.79  E-value=1.8e-08  Score=81.24  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=61.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++|+++|+| +|++|+++++.|++.|++|++++|+.++.++..+++    + .+..+.+|+++.+++.++++   ++|++
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~----~-~~~~~~~Dv~d~~~l~~~l~---~~DvV   72 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----Q-HSTPISLDVNDDAALDAEVA---KHDLV   72 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTC----T-TEEEEECCTTCHHHHHHHHT---TSSEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhc----C-CceEEEeecCCHHHHHHHHc---CCcEE
Confidence            478999998 699999999999999999999999987655433221    1 25667889999988887775   69999


Q ss_pred             EecCCCC
Q 030328          116 VVNQGVF  122 (179)
Q Consensus       116 i~~ag~~  122 (179)
                      ||+++..
T Consensus        73 In~a~~~   79 (450)
T 1ff9_A           73 ISLIPYT   79 (450)
T ss_dssp             EECCC--
T ss_pred             EECCccc
Confidence            9999853

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.78  E-value=1.1e-07  Score=73.05  Aligned_cols=83  Identities=23%  Similarity=0.334  Sum_probs=65.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC---hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS---GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~---~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .++++|+++|+|+ ||+|++++..|++.|+ +|++++|+   .++.++..+++....+..+  ...++.+.+++.+.++ 
T Consensus       150 ~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~--~~~~~~~~~~l~~~l~-  225 (315)
T 3tnl_A          150 HDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKA--QLFDIEDHEQLRKEIA-  225 (315)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEE--EEEETTCHHHHHHHHH-
T ss_pred             CCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCce--EEeccchHHHHHhhhc-
Confidence            3578999999998 7999999999999999 79999999   7888888777765544433  3456777666665554 


Q ss_pred             hCCCcEEEecCCC
Q 030328          109 AGPVDVLVVNQGV  121 (179)
Q Consensus       109 ~~~id~li~~ag~  121 (179)
                        ..|++||+...
T Consensus       226 --~aDiIINaTp~  236 (315)
T 3tnl_A          226 --ESVIFTNATGV  236 (315)
T ss_dssp             --TCSEEEECSST
T ss_pred             --CCCEEEECccC
Confidence              68999998654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.77  E-value=5.6e-09  Score=79.44  Aligned_cols=81  Identities=21%  Similarity=0.275  Sum_probs=59.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++++|+++|+|++ |+|+++++.|++.| +|++++|+.++.++..+++....+... .+.+|+++.      .+..+++|
T Consensus       125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~-~~~~d~~~~------~~~~~~~D  195 (287)
T 1nvt_A          125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-GEEVKFSGL------DVDLDGVD  195 (287)
T ss_dssp             CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-HHHEEEECT------TCCCTTCC
T ss_pred             CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccccc-ceeEEEeeH------HHhhCCCC
Confidence            4678999999997 99999999999999 999999999888777766643211000 012343331      23456899


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|||+|...
T Consensus       196 ilVn~ag~~~  205 (287)
T 1nvt_A          196 IIINATPIGM  205 (287)
T ss_dssp             EEEECSCTTC
T ss_pred             EEEECCCCCC
Confidence            9999998754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.77  E-value=1.8e-08  Score=78.02  Aligned_cols=78  Identities=22%  Similarity=0.328  Sum_probs=57.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+.. +++    +.+   ...|.++.+++.+.+++.  +++|
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~----g~~---~~~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI----GFD---AAFNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT----TCS---EEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc----CCc---EEEecCCHHHHHHHHHHHhCCCCe
Confidence            689999999999999999999999999999999988776554 332    333   234766533333333332  4799


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+|+|.
T Consensus       217 ~vi~~~g~  224 (333)
T 1v3u_A          217 CYFDNVGG  224 (333)
T ss_dssp             EEEESSCH
T ss_pred             EEEECCCh
Confidence            99999984

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=98.77  E-value=1.6e-09  Score=88.99  Aligned_cols=99  Identities=24%  Similarity=0.318  Sum_probs=66.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++|+++|||| ||+|+++++.|++.|++|++++|+.++.++..+++    +.++.    ++.+   +++.  ....+|
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~----~~~~~----~~~d---l~~~--~~~~~D  426 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAI----GGKAL----SLTD---LDNY--HPEDGM  426 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHT----TC-CE----ETTT---TTTC----CCSE
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCcee----eHHH---hhhc--cccCce
Confidence            367899999999 59999999999999999999999988877766554    22221    2222   1110  123589


Q ss_pred             EEEecCCCCCC-----CCcccCCHHHHHHHHHhhhhHH
Q 030328          114 VLVVNQGVFVP-----GELEVQSLDEVRLMIDVNIIGS  146 (179)
Q Consensus       114 ~li~~ag~~~~-----~~~~~~~~~~~~~~~~~n~~~~  146 (179)
                      ++|||+|....     .++.+.+.+.+..++++|+.+.
T Consensus       427 ilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~  464 (523)
T 2o7s_A          427 VLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR  464 (523)
T ss_dssp             EEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred             EEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence            99999997532     3455556677788899998765

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.67  E-value=5.2e-08  Score=73.45  Aligned_cols=77  Identities=13%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++|+++|+|+ ||+|+++++.|++.|++|++++|+.++.++..+++... + .+.  ..|.   +++    .+ ++.|
T Consensus       116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~-~-~~~--~~~~---~~~----~~-~~~D  182 (271)
T 1nyt_A          116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT-G-SIQ--ALSM---DEL----EG-HEFD  182 (271)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG-S-SEE--ECCS---GGG----TT-CCCS
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc-C-Cee--EecH---HHh----cc-CCCC
Confidence            467899999999 79999999999999999999999998887776665421 1 221  2232   222    12 5899


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++||+++...
T Consensus       183 ivVn~t~~~~  192 (271)
T 1nyt_A          183 LIINATSSGI  192 (271)
T ss_dssp             EEEECCSCGG
T ss_pred             EEEECCCCCC
Confidence            9999998654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.64  E-value=1.9e-07  Score=63.19  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=58.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+++++|+|+ |.+|+++++.|.++|++|++++++++..+...+     .+  ...+..|.++++.++++  ...+.|++
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-----~~--~~~~~gd~~~~~~l~~~--~~~~~d~v   74 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED-----EG--FDAVIADPTDESFYRSL--DLEGVSAV   74 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----TT--CEEEECCTTCHHHHHHS--CCTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----CC--CcEEECCCCCHHHHHhC--CcccCCEE
Confidence            4578999998 789999999999999999999999877654432     12  45678999998877654  23468999


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      |.+.+
T Consensus        75 i~~~~   79 (141)
T 3llv_A           75 LITGS   79 (141)
T ss_dssp             EECCS
T ss_pred             EEecC
Confidence            88776

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.3e-07  Score=76.46  Aligned_cols=79  Identities=18%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+++++++|+|| |++|+++++.|++. |++|.+++|+.++.++..++    .+  +..+..|+++.+++.+.++   +.
T Consensus        20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~----~~--~~~~~~D~~d~~~l~~~l~---~~   89 (467)
T 2axq_A           20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP----SG--SKAISLDVTDDSALDKVLA---DN   89 (467)
T ss_dssp             ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG----GT--CEEEECCTTCHHHHHHHHH---TS
T ss_pred             CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh----cC--CcEEEEecCCHHHHHHHHc---CC
Confidence            467889999998 99999999999998 78999999998776654432    12  4456789999888887776   68


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |+|||+++..
T Consensus        90 DvVIn~tp~~   99 (467)
T 2axq_A           90 DVVISLIPYT   99 (467)
T ss_dssp             SEEEECSCGG
T ss_pred             CEEEECCchh
Confidence            9999999853

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=98.61  E-value=3.6e-08  Score=68.40  Aligned_cols=74  Identities=15%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             CchHHHHHHHHHHcCCeEEEEecChhHHH---HHHHHHHhhcCceEEEEEeeCCCH--HHHHHHHHh----hCCCcEEEe
Q 030328           47 SGIGLALAHQAAKEGARVSILARSGEKLE---EAKQSIQLATGIEVATYSADVRDF--DAVKTALDE----AGPVDVLVV  117 (179)
Q Consensus        47 ~~iG~~la~~l~~~g~~v~~~~r~~~~~~---~~~~~~~~~~~~~v~~~~~D~~~~--~~v~~~~~~----~~~id~li~  117 (179)
                      +.++.+.++.|++.|++|++.+|++++.+   +..+.+. ..|.++..+++|++++  ++++++++.    +|+ |+|||
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~-~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVn  103 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVT-QAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVH  103 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHH-HTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHH-HcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence            35789999999999999999988765432   1223332 3477788899999998  888877654    577 99999


Q ss_pred             cCCCC
Q 030328          118 NQGVF  122 (179)
Q Consensus       118 ~ag~~  122 (179)
                      |||..
T Consensus       104 nAgg~  108 (157)
T 3gxh_A          104 CLANY  108 (157)
T ss_dssp             CSBSH
T ss_pred             CCCCC
Confidence            99963

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.60  E-value=1.3e-07  Score=72.83  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+...+ +    +.+.   ..|.++.+..+++.+..  +++|
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~----g~~~---~~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A----GAWQ---VINYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H----TCSE---EEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c----CCCE---EEECCCccHHHHHHHHhCCCCce
Confidence            58999999999999999999999999999999999876654432 2    3332   24666654445554432  3699


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      ++|+|+|
T Consensus       212 ~vi~~~g  218 (327)
T 1qor_A          212 VVYDSVG  218 (327)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9999998

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.60  E-value=2e-07  Score=72.14  Aligned_cols=78  Identities=23%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+...+ +    +.+.   ..|.++.+..+++.+..  .++|
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~----g~~~---~~d~~~~~~~~~i~~~~~~~~~d  216 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-L----GCHH---TINYSTQDFAEVVREITGGKGVD  216 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H----TCSE---EEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c----CCCE---EEECCCHHHHHHHHHHhCCCCCe
Confidence            58999999999999999999999999999999999876654432 2    3332   24666544444444332  3699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+|+|.
T Consensus       217 ~vi~~~g~  224 (333)
T 1wly_A          217 VVYDSIGK  224 (333)
T ss_dssp             EEEECSCT
T ss_pred             EEEECCcH
Confidence            99999985

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.60  E-value=1.6e-07  Score=73.26  Aligned_cols=78  Identities=24%  Similarity=0.275  Sum_probs=58.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+.. +++    +.+   ...|.++.+..+++.+..  +++|
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL----GAA---AGFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH----TCS---EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc----CCc---EEEecCChHHHHHHHHHhcCCCce
Confidence            589999999999999999999999999999999998776654 222    333   234666544444444432  3699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+|+|.
T Consensus       234 ~vi~~~G~  241 (354)
T 2j8z_A          234 LILDCIGG  241 (354)
T ss_dssp             EEEESSCG
T ss_pred             EEEECCCc
Confidence            99999984

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.59  E-value=1.7e-07  Score=73.10  Aligned_cols=78  Identities=18%  Similarity=0.241  Sum_probs=57.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+.. ++    .+.+.   ..|.++.+..+++.+..  +++|
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~----~ga~~---~~d~~~~~~~~~~~~~~~~~~~D  241 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQ----NGAHE---VFNHREVNYIDKIKKYVGEKGID  241 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH----TTCSE---EEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HH----cCCCE---EEeCCCchHHHHHHHHcCCCCcE
Confidence            589999999999999999999999999999999998766532 22    23332   34666654444444432  3699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+|+|.
T Consensus       242 ~vi~~~G~  249 (351)
T 1yb5_A          242 IIIEMLAN  249 (351)
T ss_dssp             EEEESCHH
T ss_pred             EEEECCCh
Confidence            99999873

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.58  E-value=2.2e-09  Score=86.55  Aligned_cols=44  Identities=20%  Similarity=0.193  Sum_probs=38.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      .+.||+++|||++ +||+++|+.|+..|++|+++++++.+.++..
T Consensus       262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa  305 (488)
T 3ond_A          262 MIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQAT  305 (488)
T ss_dssp             CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             cccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4789999999997 9999999999999999999999987655443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.56  E-value=2.6e-07  Score=71.91  Aligned_cols=78  Identities=23%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+|++|++|.++++.+...|++|+++++++++.+.. ++    .+.+   ...|.++.+++.+.+++.  +++|
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~----~g~~---~~~d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RS----IGGE---VFIDFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HH----TTCC---EEEETTTCSCHHHHHHHHHTSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HH----cCCc---eEEecCccHhHHHHHHHHhCCCCC
Confidence            689999999999999999999999999999999988766433 22    2333   224766433444433321  2699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+++|.
T Consensus       241 ~vi~~~g~  248 (347)
T 2hcy_A          241 GVINVSVS  248 (347)
T ss_dssp             EEEECSSC
T ss_pred             EEEECCCc
Confidence            99999984

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.54  E-value=1.5e-07  Score=73.12  Aligned_cols=79  Identities=22%  Similarity=0.314  Sum_probs=56.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.++++.+...|++|+++++++++.+...+++    +...   ..|.++.+++.+.+++.  +++|
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~----g~~~---~~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF----GFDD---AFNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS----CCSE---EEETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCce---EEecCCHHHHHHHHHHHhCCCCc
Confidence            6899999999999999999999999999999999987665443222    3332   23655432333333221  4689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+++|.
T Consensus       228 ~vi~~~g~  235 (345)
T 2j3h_A          228 IYFENVGG  235 (345)
T ss_dssp             EEEESSCH
T ss_pred             EEEECCCH
Confidence            99999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.54  E-value=1.2e-07  Score=63.98  Aligned_cols=76  Identities=14%  Similarity=0.205  Sum_probs=56.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +++++++|+|+ |.+|..+++.|.+.|++|++++++++..+..    .. .+  ...+..|.++.+.+++.  ..++.|+
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~----~~-~~--~~~~~~d~~~~~~l~~~--~~~~~d~   73 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAY----AS-YA--THAVIANATEENELLSL--GIRNFEY   73 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTT----TT-TC--SEEEECCTTCHHHHHTT--TGGGCSE
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HH-hC--CEEEEeCCCCHHHHHhc--CCCCCCE
Confidence            45678999998 9999999999999999999999987654422    11 12  24567898887665443  1346899


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      +|++++
T Consensus        74 vi~~~~   79 (144)
T 2hmt_A           74 VIVAIG   79 (144)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.52  E-value=1.5e-06  Score=66.68  Aligned_cols=84  Identities=25%  Similarity=0.326  Sum_probs=62.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC---hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS---GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~---~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .++++|+++|+|+ ||.|++++..|++.|+ +|+++.|+   .++.++..+++....+..+.  ..+..+.+.+.+.++ 
T Consensus       144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~--~~~~~~l~~~~~~l~-  219 (312)
T 3t4e_A          144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVT--VTDLADQHAFTEALA-  219 (312)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEE--EEETTCHHHHHHHHH-
T ss_pred             CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceE--EechHhhhhhHhhcc-
Confidence            3578999999998 8999999999999998 79999999   77788777777655444433  345555433334443 


Q ss_pred             hCCCcEEEecCCCC
Q 030328          109 AGPVDVLVVNQGVF  122 (179)
Q Consensus       109 ~~~id~li~~ag~~  122 (179)
                        +.|++||+.+..
T Consensus       220 --~~DiIINaTp~G  231 (312)
T 3t4e_A          220 --SADILTNGTKVG  231 (312)
T ss_dssp             --HCSEEEECSSTT
T ss_pred             --CceEEEECCcCC
Confidence              579999986543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.52  E-value=2.4e-07  Score=71.65  Aligned_cols=79  Identities=24%  Similarity=0.307  Sum_probs=57.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~id~  114 (179)
                      .+++++|+||+|++|.+.++.+...|++|+++++++++.+...+++    +.+.   ..|.++.+..+.+.+. .+++|+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~~~~~~~~~~~~d~  221 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL----GFDG---AIDYKNEDLAAGLKRECPKGIDV  221 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----CCSE---EEETTTSCHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCCE---EEECCCHHHHHHHHHhcCCCceE
Confidence            6899999999999999999999999999999999988766543332    3332   2455554333333332 246999


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      +++|+|.
T Consensus       222 vi~~~g~  228 (336)
T 4b7c_A          222 FFDNVGG  228 (336)
T ss_dssp             EEESSCH
T ss_pred             EEECCCc
Confidence            9999883

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.51  E-value=4.3e-07  Score=70.60  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=57.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+++++|+|++|++|.++++.+... |++|+++++++++.+... ++    +.+.   ..|.++.+..+++.+..  +++
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~----g~~~---~~~~~~~~~~~~~~~~~~~~~~  241 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA----GADY---VINASMQDPLAEIRRITESKGV  241 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH----TCSE---EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh----CCCE---EecCCCccHHHHHHHHhcCCCc
Confidence            6899999999999999999999999 999999999987765442 22    3332   23555544333333322  479


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++|+++|.
T Consensus       242 d~vi~~~g~  250 (347)
T 1jvb_A          242 DAVIDLNNS  250 (347)
T ss_dssp             EEEEESCCC
T ss_pred             eEEEECCCC
Confidence            999999984

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.51  E-value=2.1e-07  Score=72.59  Aligned_cols=79  Identities=16%  Similarity=0.222  Sum_probs=56.9

Q ss_pred             CC--cEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CC
Q 030328           36 KD--RHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GP  111 (179)
Q Consensus        36 ~~--k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~  111 (179)
                      .+  ++++|+||+|++|.++++.+...|+ +|+++++++++.+...+++    +.+   ...|.++.+..+++.+.. ++
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~----g~~---~~~d~~~~~~~~~~~~~~~~~  230 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL----GFD---AAINYKKDNVAEQLRESCPAG  230 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS----CCS---EEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----CCc---eEEecCchHHHHHHHHhcCCC
Confidence            46  8999999999999999999999999 9999999987665443322    333   234666543333333322 26


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|+|+|.
T Consensus       231 ~d~vi~~~G~  240 (357)
T 2zb4_A          231 VDVYFDNVGG  240 (357)
T ss_dssp             EEEEEESCCH
T ss_pred             CCEEEECCCH
Confidence            9999999983

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.39  E-value=2.8e-06  Score=64.00  Aligned_cols=78  Identities=14%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++|+++|+|+ ||+|++++..|++.|++|++++|+.++.++..+++... + .+.  ..|+.   ++.   +  ++.|
T Consensus       116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~-~-~~~--~~~~~---~~~---~--~~~D  182 (272)
T 1p77_A          116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY-G-NIQ--AVSMD---SIP---L--QTYD  182 (272)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-S-CEE--EEEGG---GCC---C--SCCS
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc-C-CeE--EeeHH---Hhc---c--CCCC
Confidence            467899999998 79999999999999999999999998888777766431 1 222  23331   111   1  4799


Q ss_pred             EEEecCCCCCC
Q 030328          114 VLVVNQGVFVP  124 (179)
Q Consensus       114 ~li~~ag~~~~  124 (179)
                      ++||+++....
T Consensus       183 ivIn~t~~~~~  193 (272)
T 1p77_A          183 LVINATSAGLS  193 (272)
T ss_dssp             EEEECCCC---
T ss_pred             EEEECCCCCCC
Confidence            99999986543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.38  E-value=1.1e-06  Score=66.63  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=59.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .+++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.++..+++.... +..+  ...+..+   +.+.++   .
T Consensus       124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i--~~~~~~~---l~~~l~---~  194 (283)
T 3jyo_A          124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAV--VGVDARG---IEDVIA---A  194 (283)
T ss_dssp             TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCE--EEECSTT---HHHHHH---H
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceE--EEcCHHH---HHHHHh---c
Confidence            468999999998 7999999999999999 69999999999888887776432 2233  2334333   344444   4


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      .|++||+...
T Consensus       195 ~DiVInaTp~  204 (283)
T 3jyo_A          195 ADGVVNATPM  204 (283)
T ss_dssp             SSEEEECSST
T ss_pred             CCEEEECCCC
Confidence            7999998654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.36  E-value=1.6e-06  Score=67.59  Aligned_cols=78  Identities=29%  Similarity=0.360  Sum_probs=56.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~id~  114 (179)
                      .+++++|+||+|++|.+.++.+...|++|+++++++++.+...+ +    +.+..   .|.++.+..+++.+. .+++|+
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l----Ga~~~---~~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-L----GAKRG---INYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H----TCSEE---EETTTSCHHHHHHHHHSSCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c----CCCEE---EeCCchHHHHHHHHHhCCCceE
Confidence            68999999999999999999999999999999999887664432 2    33322   354443333333222 346999


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      +|+++|.
T Consensus       239 vid~~g~  245 (353)
T 4dup_A          239 ILDMIGA  245 (353)
T ss_dssp             EEESCCG
T ss_pred             EEECCCH
Confidence            9999984

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.36  E-value=2.4e-06  Score=66.29  Aligned_cols=77  Identities=27%  Similarity=0.300  Sum_probs=56.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+|++|++|.++++.+...|++|+++++++++.+... ++    +.+.   ..|.++.+..+++.+..  .++|
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~----ga~~---~~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL----GADE---TVNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH----TCSE---EEETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc----CCCE---EEcCCcccHHHHHHHHhCCCCce
Confidence            5889999999999999999999999999999999987766443 22    3332   24666543333333222  3699


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      ++|+++|
T Consensus       238 ~vi~~~g  244 (343)
T 2eih_A          238 KVVDHTG  244 (343)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9999998

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.35  E-value=1.7e-06  Score=66.95  Aligned_cols=119  Identities=14%  Similarity=0.067  Sum_probs=74.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecC----hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGA-------RVSILARS----GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~----~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      .++++||||+|.+|.+++..|+.+|.       +|.++|++    +++.+....++... ....   ..|+...++..+.
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~-~~~~---~~~i~~~~~~~~a   80 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC-AFPL---LAGMTAHADPMTA   80 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT-TCTT---EEEEEEESSHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh-cccc---cCcEEEecCcHHH
Confidence            35899999999999999999999885       79999998    54454433444321 1111   1233322233344


Q ss_pred             HHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecc
Q 030328          106 LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSS  173 (179)
Q Consensus       106 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss  173 (179)
                      ++   ..|++|+.||.....   ..+.+   ..+..|+..+..+.+.+...    . +...+++++|.
T Consensus        81 l~---~aD~Vi~~ag~~~~~---g~~r~---dl~~~N~~i~~~i~~~i~~~----~-~p~a~ii~~SN  134 (329)
T 1b8p_A           81 FK---DADVALLVGARPRGP---GMERK---DLLEANAQIFTVQGKAIDAV----A-SRNIKVLVVGN  134 (329)
T ss_dssp             TT---TCSEEEECCCCCCCT---TCCHH---HHHHHHHHHHHHHHHHHHHH----S-CTTCEEEECSS
T ss_pred             hC---CCCEEEEeCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh----c-CCCeEEEEccC
Confidence            43   689999999965432   12333   35788888887777765332    1 12237888774

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.34  E-value=5.8e-06  Score=56.67  Aligned_cols=78  Identities=15%  Similarity=0.288  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+++++|.|+ |.+|+.+++.|.+.|++|+++++++ +..+...+..    ...+..+..|.++++.+++.  ...+.|.
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~ad~   74 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA--GIDRCRA   74 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH--TTTTCSE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh----cCCCeEEEcCCCCHHHHHHc--ChhhCCE
Confidence            4567899997 9999999999999999999999974 4444333322    22356788999998876654  1236788


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      +|...+
T Consensus        75 vi~~~~   80 (153)
T 1id1_A           75 ILALSD   80 (153)
T ss_dssp             EEECSS
T ss_pred             EEEecC
Confidence            887765

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.32  E-value=2.6e-05  Score=60.25  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++++||||+|.+|.+++..|+++|  .+|.++|++++  +....++.... ...+..    +.+.++.++.++   ..|
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~al~---gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEAALT---GMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHHHHT---TCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHHHcC---CCC
Confidence            3579999999999999999999998  78999998765  22222232211 112221    223445555554   689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL  154 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  154 (179)
                      ++|+.+|......   .+.+   ..+..|+..+..+.+.+.
T Consensus        79 vVi~~ag~~~~~g---~~r~---dl~~~N~~~~~~i~~~i~  113 (326)
T 1smk_A           79 LIIVPAGVPRKPG---MTRD---DLFKINAGIVKTLCEGIA  113 (326)
T ss_dssp             EEEECCCCCCCSS---CCCS---HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCcCCCCC---CCHH---HHHHHHHHHHHHHHHHHH
Confidence            9999999644221   1222   337788888877777653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.31  E-value=5.4e-06  Score=63.78  Aligned_cols=78  Identities=22%  Similarity=0.228  Sum_probs=57.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.+.++.+...|++|+++++++++.+... ++    +.+.   ..|.++.+..+++.+..  .++|
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~----Ga~~---~~~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL----GAWE---TIDYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH----TCSE---EEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc----CCCE---EEeCCCccHHHHHHHHhCCCCce
Confidence            6899999999999999999999999999999999988766443 22    3332   23555544444444332  3699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++++++|.
T Consensus       212 vvid~~g~  219 (325)
T 3jyn_A          212 VVYDGVGQ  219 (325)
T ss_dssp             EEEESSCG
T ss_pred             EEEECCCh
Confidence            99999884

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.31  E-value=1.8e-06  Score=66.75  Aligned_cols=78  Identities=26%  Similarity=0.314  Sum_probs=56.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.+.++.+...|++|+++++++++.+.. ++    .+.+.   ..|..+.+..+++.+..  .++|
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~----~ga~~---~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KE----YGAEY---LINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH----TTCSE---EEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HH----cCCcE---EEeCCCchHHHHHHHHhCCCCce
Confidence            689999999999999999999999999999999988776533 22    24332   23555443334443332  3689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++++++|.
T Consensus       220 ~vid~~g~  227 (334)
T 3qwb_A          220 ASFDSVGK  227 (334)
T ss_dssp             EEEECCGG
T ss_pred             EEEECCCh
Confidence            99999884

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.27  E-value=1.9e-06  Score=66.73  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=56.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+|++|++|.+.++.+...|++|+++++++++.+...+ +    +.+.   ..|..+.+..+++.+..  .++|
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l----ga~~---~~~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L----GAAY---VIDTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H----TCSE---EEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C----CCcE---EEeCCcccHHHHHHHHhCCCCCc
Confidence            68999999999999999999999999999999998887654432 2    3332   23554433333343322  3689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+++|.
T Consensus       216 vvid~~g~  223 (340)
T 3gms_A          216 AAIDSIGG  223 (340)
T ss_dssp             EEEESSCH
T ss_pred             EEEECCCC
Confidence            99999873

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.27  E-value=6.1e-06  Score=64.57  Aligned_cols=74  Identities=20%  Similarity=0.328  Sum_probs=53.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh---hHHHHHHHHHHhhcCceEEEEEeeCCC--HHHHHHHHHh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG---EKLEEAKQSIQLATGIEVATYSADVRD--FDAVKTALDE  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~---~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~v~~~~~~  108 (179)
                      .+++++++|+|+ |++|...++.+...|++|+++++++   ++.+.. +++    +.+.  +  | .+  .+.+.+ . .
T Consensus       178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~----ga~~--v--~-~~~~~~~~~~-~-~  244 (366)
T 2cdc_A          178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EET----KTNY--Y--N-SSNGYDKLKD-S-V  244 (366)
T ss_dssp             SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHH----TCEE--E--E-CTTCSHHHHH-H-H
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHh----CCce--e--c-hHHHHHHHHH-h-C
Confidence            345999999999 9999999999999999999999987   654322 222    4332  2  4 43  223333 2 2


Q ss_pred             hCCCcEEEecCCC
Q 030328          109 AGPVDVLVVNQGV  121 (179)
Q Consensus       109 ~~~id~li~~ag~  121 (179)
                       +++|++|+++|.
T Consensus       245 -~~~d~vid~~g~  256 (366)
T 2cdc_A          245 -GKFDVIIDATGA  256 (366)
T ss_dssp             -CCEEEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             579999999984

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.25  E-value=6.8e-06  Score=54.97  Aligned_cols=75  Identities=15%  Similarity=0.279  Sum_probs=55.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +++++|+|+ |.+|..+++.|.+.|++|++++++++..+...+    ..+  +..+..|.++.+.+.+.  ...+.|++|
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~~~--~~~~~~d~~~~~~l~~~--~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----EID--ALVINGDCTKIKTLEDA--GIEDADMYI   74 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HCS--SEEEESCTTSHHHHHHT--TTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----hcC--cEEEEcCCCCHHHHHHc--CcccCCEEE
Confidence            467899987 999999999999999999999999876554332    112  34567788877655432  134689999


Q ss_pred             ecCC
Q 030328          117 VNQG  120 (179)
Q Consensus       117 ~~ag  120 (179)
                      .+.+
T Consensus        75 ~~~~   78 (140)
T 1lss_A           75 AVTG   78 (140)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            9875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.23  E-value=3.4e-06  Score=64.34  Aligned_cols=78  Identities=14%  Similarity=0.215  Sum_probs=56.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+++|+++|+|+ |++|++++..|++.|+ +|++++|+.++.++..+++....+ .       ..+.+++.+   .....
T Consensus       138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~-~-------~~~~~~~~~---~~~~a  205 (297)
T 2egg_A          138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS-A-------YFSLAEAET---RLAEY  205 (297)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC-C-------EECHHHHHH---TGGGC
T ss_pred             CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC-c-------eeeHHHHHh---hhccC
Confidence            467899999998 7899999999999998 899999999887776655421100 1       112233333   33468


Q ss_pred             cEEEecCCCCC
Q 030328          113 DVLVVNQGVFV  123 (179)
Q Consensus       113 d~li~~ag~~~  123 (179)
                      |++||+.+...
T Consensus       206 DivIn~t~~~~  216 (297)
T 2egg_A          206 DIIINTTSVGM  216 (297)
T ss_dssp             SEEEECSCTTC
T ss_pred             CEEEECCCCCC
Confidence            99999987543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.23  E-value=1.9e-05  Score=61.77  Aligned_cols=77  Identities=26%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +++++++|+|+ |++|+++++.+...|++|++++|++++.+...+...    ..+..   +..+.+++.+.++   ..|+
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~----~~~~~---~~~~~~~~~~~~~---~~Dv  233 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG----SRVEL---LYSNSAEIETAVA---EADL  233 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGSEE---EECCHHHHHHHHH---TCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC----ceeEe---eeCCHHHHHHHHc---CCCE
Confidence            56799999999 999999999999999999999999987776554332    12211   2234455555444   6899


Q ss_pred             EEecCCCC
Q 030328          115 LVVNQGVF  122 (179)
Q Consensus       115 li~~ag~~  122 (179)
                      +|++++..
T Consensus       234 VI~~~~~~  241 (361)
T 1pjc_A          234 LIGAVLVP  241 (361)
T ss_dssp             EEECCCCT
T ss_pred             EEECCCcC
Confidence            99998753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.18  E-value=6.9e-06  Score=64.21  Aligned_cols=77  Identities=23%  Similarity=0.231  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-h-CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-A-GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~-~~id  113 (179)
                      .+++++|+||+|++|...++.+...|++|+++++++++.+...+     .+.+..   .|..+.+ +.+.+++ . +++|
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-----~Ga~~~---~~~~~~~-~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-----LGCDRP---INYKTEP-VGTVLKQEYPEGVD  233 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----TTCSEE---EETTTSC-HHHHHHHHCTTCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----cCCcEE---EecCChh-HHHHHHHhcCCCCC
Confidence            58899999999999999999999999999999999776654332     243322   3444322 2222222 1 3689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+++|.
T Consensus       234 ~vid~~g~  241 (362)
T 2c0c_A          234 VVYESVGG  241 (362)
T ss_dssp             EEEECSCT
T ss_pred             EEEECCCH
Confidence            99999874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.17  E-value=8.5e-06  Score=63.20  Aligned_cols=77  Identities=23%  Similarity=0.301  Sum_probs=54.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .+++++|+||+|++|.+.++.+...|++|+++++++++.+...+ +    +.+..   .|.. .+-.+++.+..  .++|
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~----ga~~v---~~~~-~~~~~~v~~~~~~~g~D  229 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-V----GADIV---LPLE-EGWAKAVREATGGAGVD  229 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H----TCSEE---EESS-TTHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c----CCcEE---ecCc-hhHHHHHHHHhCCCCce
Confidence            68999999999999999999999999999999998887654332 2    33322   2333 22223333322  2699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++++++|.
T Consensus       230 vvid~~g~  237 (342)
T 4eye_A          230 MVVDPIGG  237 (342)
T ss_dssp             EEEESCC-
T ss_pred             EEEECCch
Confidence            99999884

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.15  E-value=2.1e-05  Score=59.49  Aligned_cols=75  Identities=15%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.++..+++....  .+...  +..+   +.      ...
T Consensus       123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~~~--~~~~---l~------~~a  188 (281)
T 3o8q_A          123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVKAQ--AFEQ---LK------QSY  188 (281)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEEEE--EGGG---CC------SCE
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--CeeEe--eHHH---hc------CCC
Confidence            468999999998 7999999999999996 89999999998888877765321  23322  2211   11      368


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |++||+.+..
T Consensus       189 DiIInaTp~g  198 (281)
T 3o8q_A          189 DVIINSTSAS  198 (281)
T ss_dssp             EEEEECSCCC
T ss_pred             CEEEEcCcCC
Confidence            9999986543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.14  E-value=1.1e-05  Score=62.57  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id~  114 (179)
                      +++++|+||+|++|.+.++.+...|++|+++++++++.+... ++    |.+.   ..|..+.+..+++.+.  ..++|+
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~----Ga~~---~~~~~~~~~~~~v~~~~~~~g~D~  236 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI----GAAH---VLNEKAPDFEATLREVMKAEQPRI  236 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH----TCSE---EEETTSTTHHHHHHHHHHHHCCCE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc----CCCE---EEECCcHHHHHHHHHHhcCCCCcE
Confidence            489999999999999999999999999999999988766443 22    4332   2344443333333222  136999


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      +++++|
T Consensus       237 vid~~g  242 (349)
T 3pi7_A          237 FLDAVT  242 (349)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999988

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=98.14  E-value=1.2e-05  Score=62.14  Aligned_cols=77  Identities=29%  Similarity=0.279  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+... +    .+.+.   ..|.++.+-.+++.+..+++|++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~----lGa~~---~~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-E----LGADL---VVNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-H----TTCSE---EECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-H----CCCCE---EecCCCccHHHHHHHHhCCCCEE
Confidence            5889999999 78999999999999999999999987766432 2    23332   24655432222332222579999


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      |+++|.
T Consensus       235 id~~g~  240 (339)
T 1rjw_A          235 VVTAVS  240 (339)
T ss_dssp             EESSCC
T ss_pred             EECCCC
Confidence            999884

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.13  E-value=2.5e-05  Score=61.50  Aligned_cols=78  Identities=18%  Similarity=0.190  Sum_probs=59.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+.+++++|+|+ |++|+++++.+...|++|+++++++++.+...+.+    +..+   ..+..+.+++++.++   ..|
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~----g~~~---~~~~~~~~~l~~~l~---~aD  233 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF----CGRI---HTRYSSAYELEGAVK---RAD  233 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----TTSS---EEEECCHHHHHHHHH---HCS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc----CCee---EeccCCHHHHHHHHc---CCC
Confidence            478999999999 99999999999999999999999988766544322    3332   124445666666655   579


Q ss_pred             EEEecCCCC
Q 030328          114 VLVVNQGVF  122 (179)
Q Consensus       114 ~li~~ag~~  122 (179)
                      ++|++++..
T Consensus       234 vVi~~~~~p  242 (377)
T 2vhw_A          234 LVIGAVLVP  242 (377)
T ss_dssp             EEEECCCCT
T ss_pred             EEEECCCcC
Confidence            999988743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.11  E-value=2.2e-05  Score=52.95  Aligned_cols=74  Identities=14%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .++++|.|+ |.+|..+++.|.+.|++|++++++++..++..+     .+  +..+..|.++++.+++.  ...+.|.+|
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-----~g--~~~i~gd~~~~~~l~~a--~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-----RG--VRAVLGNAANEEIMQLA--HLECAKWLI   76 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----TT--CEEEESCTTSHHHHHHT--TGGGCSEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----cC--CCEEECCCCCHHHHHhc--CcccCCEEE
Confidence            457888898 899999999999999999999999887665432     13  45678999998766553  223678888


Q ss_pred             ecCC
Q 030328          117 VNQG  120 (179)
Q Consensus       117 ~~ag  120 (179)
                      ...+
T Consensus        77 ~~~~   80 (140)
T 3fwz_A           77 LTIP   80 (140)
T ss_dssp             ECCS
T ss_pred             EECC
Confidence            7765

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.11  E-value=1.2e-05  Score=55.26  Aligned_cols=80  Identities=16%  Similarity=0.229  Sum_probs=56.1

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .....+++++|.|+ |.+|..+++.|.+.|++|++++++++..+..    ....+  ...+..|.++.+.+.+.  ...+
T Consensus        14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~----~~~~g--~~~~~~d~~~~~~l~~~--~~~~   84 (155)
T 2g1u_A           14 SKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRL----NSEFS--GFTVVGDAAEFETLKEC--GMEK   84 (155)
T ss_dssp             ---CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGS----CTTCC--SEEEESCTTSHHHHHTT--TGGG
T ss_pred             hcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH----HhcCC--CcEEEecCCCHHHHHHc--Cccc
Confidence            34456889999997 9999999999999999999999998765422    10122  33566788776554432  1236


Q ss_pred             CcEEEecCC
Q 030328          112 VDVLVVNQG  120 (179)
Q Consensus       112 id~li~~ag  120 (179)
                      .|++|.+.+
T Consensus        85 ad~Vi~~~~   93 (155)
T 2g1u_A           85 ADMVFAFTN   93 (155)
T ss_dssp             CSEEEECSS
T ss_pred             CCEEEEEeC
Confidence            899998876

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.10  E-value=1.7e-05  Score=62.09  Aligned_cols=73  Identities=23%  Similarity=0.300  Sum_probs=58.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .++|+|.|| |++|+.+++.|++ .++|.+.+++.++++...        ..+..+..|++|.+++.++++   +.|+||
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~--------~~~~~~~~d~~d~~~l~~~~~---~~DvVi   82 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK--------EFATPLKVDASNFDKLVEVMK---EFELVI   82 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT--------TTSEEEECCTTCHHHHHHHHT---TCSEEE
T ss_pred             ccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh--------ccCCcEEEecCCHHHHHHHHh---CCCEEE
Confidence            447999999 9999999999875 579999999987766432        123457789999999888876   579999


Q ss_pred             ecCCCC
Q 030328          117 VNQGVF  122 (179)
Q Consensus       117 ~~ag~~  122 (179)
                      |+++..
T Consensus        83 ~~~p~~   88 (365)
T 3abi_A           83 GALPGF   88 (365)
T ss_dssp             ECCCGG
T ss_pred             EecCCc
Confidence            998753

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=98.09  E-value=1.3e-05  Score=64.30  Aligned_cols=42  Identities=21%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|+||+|++|.+.++.+...|++|+++++++++.+..
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~  261 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV  261 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999988766544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=98.08  E-value=2.5e-05  Score=58.06  Aligned_cols=81  Identities=22%  Similarity=0.355  Sum_probs=56.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh-------------------hHHHHHHHHHHhh-cCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG-------------------EKLEEAKQSIQLA-TGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~-~~~~v~~~   92 (179)
                      .+++++++|.|+ ||+|..+++.|+..|. ++.++|++.                   ++.+...+.+... +..++..+
T Consensus        28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            367889999998 7999999999999997 799999987                   6666666666542 34456665


Q ss_pred             EeeCCCHHHHHHHHHhhCCCcEEEecC
Q 030328           93 SADVRDFDAVKTALDEAGPVDVLVVNQ  119 (179)
Q Consensus        93 ~~D~~~~~~v~~~~~~~~~id~li~~a  119 (179)
                      ..++++ +++++.++   ..|++|.+.
T Consensus       107 ~~~~~~-~~~~~~~~---~~DvVi~~~  129 (249)
T 1jw9_B          107 NALLDD-AELAALIA---EHDLVLDCT  129 (249)
T ss_dssp             CSCCCH-HHHHHHHH---TSSEEEECC
T ss_pred             eccCCH-hHHHHHHh---CCCEEEEeC
Confidence            555543 33444443   345555543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.07  E-value=1.9e-05  Score=59.47  Aligned_cols=75  Identities=15%  Similarity=0.227  Sum_probs=55.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.++..+++..   ..+...  +..+   +..     ..
T Consensus       116 ~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~---~~~~~~--~~~~---l~~-----~~  181 (272)
T 3pwz_A          116 EPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH---SRLRIS--RYEA---LEG-----QS  181 (272)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC---TTEEEE--CSGG---GTT-----CC
T ss_pred             CCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc---CCeeEe--eHHH---hcc-----cC
Confidence            3578999999998 7999999999999996 899999999988887776642   123322  2222   111     46


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      .|++||+...
T Consensus       182 ~DivInaTp~  191 (272)
T 3pwz_A          182 FDIVVNATSA  191 (272)
T ss_dssp             CSEEEECSSG
T ss_pred             CCEEEECCCC
Confidence            8999998654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.05  E-value=1.5e-05  Score=56.16  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++.+++++|.|+ |.+|..+++.|.+. |++|++++++++..+...+     .+  +..+..|.++.+.+++. ....+.
T Consensus        36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-----~g--~~~~~gd~~~~~~l~~~-~~~~~a  106 (183)
T 3c85_A           36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-----EG--RNVISGDATDPDFWERI-LDTGHV  106 (183)
T ss_dssp             CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-----TT--CCEEECCTTCHHHHHTB-CSCCCC
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-----CC--CCEEEcCCCCHHHHHhc-cCCCCC
Confidence            355778999996 99999999999999 9999999999876654321     23  33466788887655432 013468


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |.+|.+.+
T Consensus       107 d~vi~~~~  114 (183)
T 3c85_A          107 KLVLLAMP  114 (183)
T ss_dssp             CEEEECCS
T ss_pred             CEEEEeCC
Confidence            88888765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=98.04  E-value=1.8e-05  Score=61.47  Aligned_cols=42  Identities=26%  Similarity=0.390  Sum_probs=37.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|+||+|++|...++.+...|++|+++++++++.+..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT  191 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999988766544

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.04  E-value=4.6e-05  Score=58.46  Aligned_cols=104  Identities=26%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEec--ChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILAR--SGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r--~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +++||||+|.+|.+++..|+.+|.  .+.++|+  ++++.+....++...   .+..+.....|    +++.   +....
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~---~al~g   74 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENL---RIIDE   74 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCG---GGGTT
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchH---HHhCC
Confidence            689999999999999999998884  4888888  655444333333211   11222222211    1112   23447


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcH
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP  155 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  155 (179)
                      .|++|+.||......   .+..   ..++.|+..+..+.+++..
T Consensus        75 aD~Vi~~Ag~~~~~g---~~r~---dl~~~N~~i~~~i~~~i~~  112 (313)
T 1hye_A           75 SDVVIITSGVPRKEG---MSRM---DLAKTNAKIVGKYAKKIAE  112 (313)
T ss_dssp             CSEEEECCSCCCCTT---CCHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCC---CcHH---HHHHHHHHHHHHHHHHHHH
Confidence            999999999654221   2333   3588899888888777643

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.02  E-value=0.00015  Score=55.31  Aligned_cols=99  Identities=12%  Similarity=0.075  Sum_probs=64.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEec--ChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILAR--SGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r--~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +++||||+|.+|.+++..|+.+|.  ++.++|+  ++++++....++...  ....+.... +  +       .+.....
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~-------~~a~~~a   71 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G-------YEDTAGS   71 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C-------GGGGTTC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C-------HHHhCCC
Confidence            689999999999999999998875  5888998  666554433333321  122222222 2  2       1224479


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      |++|+.||......   .+.+   ..+..|+..+..+.+.+
T Consensus        72 DvVi~~ag~~~~~g---~~r~---dl~~~N~~i~~~i~~~i  106 (303)
T 1o6z_A           72 DVVVITAGIPRQPG---QTRI---DLAGDNAPIMEDIQSSL  106 (303)
T ss_dssp             SEEEECCCCCCCTT---CCHH---HHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHH
Confidence            99999999644221   2333   34788888887777765

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=98.02  E-value=5e-05  Score=58.87  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id  113 (179)
                      .++++||+||+|++|.+.++.+...|++|+++ +++++.+.. ++    .+.+.    .| .+.+..+.+.+.  ..++|
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~----lGa~~----i~-~~~~~~~~~~~~~~~~g~D  218 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RD----LGATP----ID-ASREPEDYAAEHTAGQGFD  218 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HH----HTSEE----EE-TTSCHHHHHHHHHTTSCEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HH----cCCCE----ec-cCCCHHHHHHHHhcCCCce
Confidence            68999999999999999999999999999998 777665432 22    24443    33 222222222222  23689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++++++|.
T Consensus       219 ~vid~~g~  226 (343)
T 3gaz_A          219 LVYDTLGG  226 (343)
T ss_dssp             EEEESSCT
T ss_pred             EEEECCCc
Confidence            99999883

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=98.01  E-value=1.7e-05  Score=60.35  Aligned_cols=73  Identities=23%  Similarity=0.258  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~~~id~  114 (179)
                      .+++++|+|++|++|...++.+...|++|+++++++++.+... +    .+.+.   ..|..+ .+..+++    +++|+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~----~ga~~---~~~~~~~~~~~~~~----~~~d~  192 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-A----LGAEE---AATYAEVPERAKAW----GGLDL  192 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-H----TTCSE---EEEGGGHHHHHHHT----TSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-h----cCCCE---EEECCcchhHHHHh----cCceE
Confidence            6899999999999999999999999999999999887665432 2    23332   235544 3222222    46888


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      +|+ +|.
T Consensus       193 vid-~g~  198 (302)
T 1iz0_A          193 VLE-VRG  198 (302)
T ss_dssp             EEE-CSC
T ss_pred             EEE-CCH
Confidence            888 774

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.00  E-value=6.5e-06  Score=55.85  Aligned_cols=71  Identities=11%  Similarity=0.196  Sum_probs=52.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +++++|.|+ |++|+++++.|.+.|++|.+++|++++.++..+++    +..+    .+..+.   ++.++   ..|++|
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----~~~~----~~~~~~---~~~~~---~~Divi   85 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----EYEY----VLINDI---DSLIK---NNDVII   85 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----TCEE----EECSCH---HHHHH---TCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----CCce----EeecCH---HHHhc---CCCEEE
Confidence            889999997 99999999999999999999999998877655544    2221    123332   33443   578888


Q ss_pred             ecCCCC
Q 030328          117 VNQGVF  122 (179)
Q Consensus       117 ~~ag~~  122 (179)
                      ++.+..
T Consensus        86 ~at~~~   91 (144)
T 3oj0_A           86 TATSSK   91 (144)
T ss_dssp             ECSCCS
T ss_pred             EeCCCC
Confidence            887654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.98  E-value=8.8e-05  Score=57.30  Aligned_cols=76  Identities=29%  Similarity=0.347  Sum_probs=54.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+... +    .|.+..   .|..+.+..+++.+..+++|++
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~----lGa~~~---i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-R----LGAEVA---VNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-H----TTCSEE---EETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-H----cCCCEE---EeCCCcCHHHHHHHhCCCCCEE
Confidence            6889999997 89999999999999999999999988766432 2    244322   3444433334444444578999


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      +.++|
T Consensus       237 id~~g  241 (340)
T 3s2e_A          237 LVTAV  241 (340)
T ss_dssp             EESSC
T ss_pred             EEeCC
Confidence            99876

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.97  E-value=2.5e-05  Score=61.09  Aligned_cols=75  Identities=25%  Similarity=0.354  Sum_probs=55.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+...++    .|.+.   ..|..+.+.+.+..   +++|++
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----lGa~~---v~~~~~~~~~~~~~---~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN----FGADS---FLVSRDQEQMQAAA---GTLDGI  255 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT----SCCSE---EEETTCHHHHHHTT---TCEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----cCCce---EEeccCHHHHHHhh---CCCCEE
Confidence            6889999996 9999999999999999999999998776544322    24332   24666655444332   479999


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      |+++|.
T Consensus       256 id~~g~  261 (366)
T 1yqd_A          256 IDTVSA  261 (366)
T ss_dssp             EECCSS
T ss_pred             EECCCc
Confidence            999885

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.96  E-value=3.1e-05  Score=60.75  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+++++|+||+|++|...++.+...|++|+++++ +++.+.. ++    .|.+.   ..|..+.+..+++. +.+++|++
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~-~~----lGa~~---v~~~~~~~~~~~~~-~~~g~D~v  252 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELV-RK----LGADD---VIDYKSGSVEEQLK-SLKPFDFI  252 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHH-HH----TTCSE---EEETTSSCHHHHHH-TSCCBSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHH-HH----cCCCE---EEECCchHHHHHHh-hcCCCCEE
Confidence            6899999999999999999999999999998884 4444332 22    24432   23554433333333 33579999


Q ss_pred             EecCCCC
Q 030328          116 VVNQGVF  122 (179)
Q Consensus       116 i~~ag~~  122 (179)
                      |+++|..
T Consensus       253 id~~g~~  259 (375)
T 2vn8_A          253 LDNVGGS  259 (375)
T ss_dssp             EESSCTT
T ss_pred             EECCCCh
Confidence            9998854

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.91  E-value=0.00011  Score=55.84  Aligned_cols=74  Identities=15%  Similarity=0.262  Sum_probs=54.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh------------------hHHHHHHHHHHh-hcCceEEEE
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG------------------EKLEEAKQSIQL-ATGIEVATY   92 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~-~~~~~v~~~   92 (179)
                      ..+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                  .+.+...+.+.. ++..++..+
T Consensus        32 ~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~  110 (292)
T 3h8v_A           32 EKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVH  110 (292)
T ss_dssp             CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEe
Confidence            3478899999999 8999999999999995 588888775                  445555555543 335677777


Q ss_pred             EeeCCCHHHHHHHHH
Q 030328           93 SADVRDFDAVKTALD  107 (179)
Q Consensus        93 ~~D~~~~~~v~~~~~  107 (179)
                      ..++++.+.++++++
T Consensus       111 ~~~l~~~~~~~~~~~  125 (292)
T 3h8v_A          111 NYNITTVENFQHFMD  125 (292)
T ss_dssp             CCCTTSHHHHHHHHH
T ss_pred             cccCCcHHHHHHHhh
Confidence            777777666666553

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.91  E-value=5.9e-05  Score=54.61  Aligned_cols=73  Identities=23%  Similarity=0.251  Sum_probs=55.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++|.|+ |.+|.++++.|.++|++|++++++++..++..+.    .+  ...+..|.++++.+++.  ...+.|++|..
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~----~~--~~~i~gd~~~~~~l~~a--~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK----LK--ATIIHGDGSHKEILRDA--EVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH----SS--SEEEESCTTSHHHHHHH--TCCTTCEEEEC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----cC--CeEEEcCCCCHHHHHhc--CcccCCEEEEe
Confidence            5899997 9999999999999999999999998876654332    12  45678899988776544  12367777766


Q ss_pred             CC
Q 030328          119 QG  120 (179)
Q Consensus       119 ag  120 (179)
                      .+
T Consensus        73 ~~   74 (218)
T 3l4b_C           73 TP   74 (218)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.84  E-value=0.00013  Score=54.69  Aligned_cols=66  Identities=24%  Similarity=0.354  Sum_probs=50.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +|+++|.|+ ||.|++++..|.+.|.+|+++.|+.++.++.. ++    +..  ..  +..+.          ...|++|
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----~~~--~~--~~~~l----------~~~DiVI  177 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----GCD--CF--MEPPK----------SAFDLII  177 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----TCE--EE--SSCCS----------SCCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----CCe--Ee--cHHHh----------ccCCEEE
Confidence            899999998 89999999999999999999999998877665 43    221  11  22221          1689999


Q ss_pred             ecCCCC
Q 030328          117 VNQGVF  122 (179)
Q Consensus       117 ~~ag~~  122 (179)
                      |+....
T Consensus       178 naTp~G  183 (269)
T 3phh_A          178 NATSAS  183 (269)
T ss_dssp             ECCTTC
T ss_pred             EcccCC
Confidence            986544

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.84  E-value=7.7e-05  Score=60.04  Aligned_cols=42  Identities=29%  Similarity=0.317  Sum_probs=37.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|+||+|++|...++.+...|++|+++++++++.+..
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~  269 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC  269 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999888766544

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.84  E-value=0.00019  Score=55.65  Aligned_cols=77  Identities=27%  Similarity=0.280  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC----HHHHHHHHHh--h
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD----FDAVKTALDE--A  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~v~~~~~~--~  109 (179)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+... +    .+.+..   .|.++    .+.+.+....  .
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~----lGa~~~---~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-N----CGADVT---LVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-H----TTCSEE---EECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-H----hCCCEE---EcCcccccHHHHHHHHhccccC
Confidence            5889999997 89999999999999999999999887665432 2    244322   23332    3334333320  2


Q ss_pred             CCCcEEEecCCC
Q 030328          110 GPVDVLVVNQGV  121 (179)
Q Consensus       110 ~~id~li~~ag~  121 (179)
                      +++|++++++|.
T Consensus       239 ~g~D~vid~~g~  250 (352)
T 1e3j_A          239 DLPNVTIDCSGN  250 (352)
T ss_dssp             SCCSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            368999999873

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.83  E-value=0.00017  Score=56.14  Aligned_cols=80  Identities=26%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-h--CC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-A--GP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~--~~  111 (179)
                      .+++++|.|+ |++|...++.+...|++ |+++++++++.+...+ +    +..+..+..|-.+.+++.+.+++ .  .+
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-l----~~~~~~~~~~~~~~~~~~~~v~~~t~g~g  252 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE-I----CPEVVTHKVERLSAEESAKKIVESFGGIE  252 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-H----CTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h----chhcccccccccchHHHHHHHHHHhCCCC
Confidence            5889999998 99999999999999998 9999999887664432 2    23344444554455555444333 2  36


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|+++.++|.
T Consensus       253 ~Dvvid~~g~  262 (363)
T 3m6i_A          253 PAVALECTGV  262 (363)
T ss_dssp             CSEEEECSCC
T ss_pred             CCEEEECCCC
Confidence            8999999883

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.82  E-value=0.0001  Score=58.47  Aligned_cols=46  Identities=22%  Similarity=0.431  Sum_probs=39.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~   81 (179)
                      +.+++++|.|+ |++|+.+++.+...|+ +|++++|+.++.++..+++
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~  211 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL  211 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            57999999998 9999999999999998 8999999987765554433

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.82  E-value=7.9e-05  Score=57.78  Aligned_cols=77  Identities=30%  Similarity=0.346  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... ++    +.+.   ..|..+.+-.+++.+..  ..+
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~----Ga~~---~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV----GADY---VINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH----TCSE---EECTTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh----CCCE---EECCCCcCHHHHHHHHcCCCCC
Confidence            7899999999 9999999999999999 8999999987655432 22    3331   23444332223333221  258


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++|+++|.
T Consensus       238 D~vid~~g~  246 (348)
T 2d8a_A          238 DVFLEFSGA  246 (348)
T ss_dssp             EEEEECSCC
T ss_pred             CEEEECCCC
Confidence            999998873

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.77  E-value=7.1e-05  Score=56.60  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=51.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++++|+++|.|+ ||.|++++..|.+.|+ +|+++.|+.++.++..+++        ..  .+   .+++.+    . ..
T Consensus       119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~--------~~--~~---~~~l~~----l-~~  179 (282)
T 3fbt_A          119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF--------KV--IS---YDELSN----L-KG  179 (282)
T ss_dssp             CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS--------EE--EE---HHHHTT----C-CC
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc--------Cc--cc---HHHHHh----c-cC
Confidence            468999999998 6999999999999998 7999999988766543322        11  11   233332    3 68


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++||+...
T Consensus       180 DivInaTp~  188 (282)
T 3fbt_A          180 DVIINCTPK  188 (282)
T ss_dssp             SEEEECSST
T ss_pred             CEEEECCcc
Confidence            999998754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.71  E-value=0.00029  Score=54.93  Aligned_cols=75  Identities=23%  Similarity=0.286  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHH-HHHHHh--hCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAV-KTALDE--AGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v-~~~~~~--~~~i  112 (179)
                      .+++++|+| +|++|...++.+...|++|+++++++++.+.. +++    |.+..   .| .+.+++ +++.+.  ..++
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l----Ga~~v---i~-~~~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FAL----GADHG---IN-RLEEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH----TCSEE---EE-TTTSCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHc----CCCEE---Ec-CCcccHHHHHHHHhCCCCc
Confidence            688999999 79999999999999999999999998776643 222    44322   24 222222 222222  2369


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |++++++|
T Consensus       259 D~vid~~g  266 (363)
T 3uog_A          259 DHILEIAG  266 (363)
T ss_dssp             EEEEEETT
T ss_pred             eEEEECCC
Confidence            99999988

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.68  E-value=0.00087  Score=51.65  Aligned_cols=79  Identities=18%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcC--ceEEEEEeeCCCHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATG--IEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +..++++.|+|+ |.+|.+++..|+.+|.  +++++|++++.++-...++.....  ..+.... |  +       .+..
T Consensus         6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~-~--~-------~~a~   74 (326)
T 3vku_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS-A--E-------YSDA   74 (326)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C-------GGGG
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE-C--c-------HHHh
Confidence            346678999997 9999999999999987  799999998877665555542111  1222222 1  1       1234


Q ss_pred             CCCcEEEecCCCCC
Q 030328          110 GPVDVLVVNQGVFV  123 (179)
Q Consensus       110 ~~id~li~~ag~~~  123 (179)
                      ...|++|+.||...
T Consensus        75 ~~aDiVvi~ag~~~   88 (326)
T 3vku_A           75 KDADLVVITAGAPQ   88 (326)
T ss_dssp             TTCSEEEECCCCC-
T ss_pred             cCCCEEEECCCCCC
Confidence            57899999999643

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.67  E-value=0.00075  Score=52.77  Aligned_cols=78  Identities=17%  Similarity=0.075  Sum_probs=53.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~id  113 (179)
                      -.+++++|.||+|++|...++.+...|++|+++. ++++.+ ..++    .|.+.   ..|..+.+-.+++.+. .+++|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~-~~~~----lGa~~---vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD-LAKS----RGAEE---VFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH-HHHH----TTCSE---EEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH-HHHH----cCCcE---EEECCCchHHHHHHHHccCCcc
Confidence            3688999999999999999999999999998886 555544 2222    34432   2355444333333332 24699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      +++.++|.
T Consensus       234 ~v~d~~g~  241 (371)
T 3gqv_A          234 YALDCITN  241 (371)
T ss_dssp             EEEESSCS
T ss_pred             EEEECCCc
Confidence            99999883

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.66  E-value=0.0015  Score=50.27  Aligned_cols=100  Identities=13%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      +.+++.|+|+ |.+|.+++..|+.+|.  +++++|++++.++....++...   .+..+.....|          .+...
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~----------~~a~~   72 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT----------YEDCK   72 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC----------GGGGT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc----------HHHhC
Confidence            4568999997 9999999999999996  7999999988776655555421   11223332222          12344


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                      ..|++|..+|....+   ..+..+   .++.|+.-.-.+.+.
T Consensus        73 ~aDvVvi~ag~p~kp---G~~R~d---L~~~N~~Iv~~i~~~  108 (326)
T 3pqe_A           73 DADIVCICAGANQKP---GETRLE---LVEKNLKIFKGIVSE  108 (326)
T ss_dssp             TCSEEEECCSCCCCT---TCCHHH---HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecccCCCC---CccHHH---HHHHHHHHHHHHHHH
Confidence            789999999964322   123333   366666444444443

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.66  E-value=7e-05  Score=57.53  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCcEEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVDVLV  116 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id~li  116 (179)
                      +++|+||+|++|...++.+...|++|+++++++++.+... +    .|.+..   .|..+.+  .+..+.  .+++|++|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~----lGa~~~---i~~~~~~--~~~~~~~~~~~~d~vi  221 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-V----LGAKEV---LAREDVM--AERIRPLDKQRWAAAV  221 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-H----TTCSEE---EECC-----------CCSCCEEEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-H----cCCcEE---EecCCcH--HHHHHHhcCCcccEEE
Confidence            7999999999999999999999999999999877665442 2    243322   3444332  122222  13688899


Q ss_pred             ecCCC
Q 030328          117 VNQGV  121 (179)
Q Consensus       117 ~~ag~  121 (179)
                      +++|.
T Consensus       222 d~~g~  226 (328)
T 1xa0_A          222 DPVGG  226 (328)
T ss_dssp             ECSTT
T ss_pred             ECCcH
Confidence            88874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=97.66  E-value=0.00031  Score=54.67  Aligned_cols=75  Identities=27%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--C-C
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--G-P  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~-~  111 (179)
                      .+++++|+|+ |++|...++.+... |++|+++++++++.+... +    .|.+.   ..|..+.  +.+.+++.  + +
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~----lGa~~---vi~~~~~--~~~~v~~~~~g~g  254 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-R----LGADH---VVDARRD--PVKQVMELTRGRG  254 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-H----TTCSE---EEETTSC--HHHHHHHHTTTCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-H----hCCCE---EEeccch--HHHHHHHHhCCCC
Confidence            5889999999 89999999998888 999999999887665432 2    24432   2354443  22222221  2 6


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|.++|.
T Consensus       255 ~Dvvid~~G~  264 (359)
T 1h2b_A          255 VNVAMDFVGS  264 (359)
T ss_dssp             EEEEEESSCC
T ss_pred             CcEEEECCCC
Confidence            8999999874

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.66  E-value=0.00023  Score=55.24  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      +.++++.|+|++|.+|.++|..++.+|.  +|+++|.+++.++....++....  ..++.. .   ++   ..+.++   
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d---~~~al~---   75 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SD---IKEALT---   75 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SC---HHHHHT---
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CC---HHHHhC---
Confidence            5678999999999999999999999984  79999999887665555554321  111111 1   12   223333   


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                      ..|++|.+||....+   ..+..   +.++.|+.-...+.+.
T Consensus        76 dADvVvitaG~p~kp---G~~R~---dLl~~N~~I~~~i~~~  111 (343)
T 3fi9_A           76 DAKYIVSSGGAPRKE---GMTRE---DLLKGNAEIAAQLGKD  111 (343)
T ss_dssp             TEEEEEECCC----------CHH---HHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEccCCCCCC---CCCHH---HHHHHHHHHHHHHHHH
Confidence            689999999964321   12333   3466666554444443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.65  E-value=1.7e-05  Score=59.88  Aligned_cols=71  Identities=14%  Similarity=0.270  Sum_probs=50.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++++|+++|+|+ ||+|++++..|.+.|+ +|++++|+.++.++..+        +...     ...+++.+.+   ...
T Consensus       114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~--------~~~~-----~~~~~~~~~~---~~a  176 (277)
T 3don_A          114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSL--------NINK-----INLSHAESHL---DEF  176 (277)
T ss_dssp             TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS--------CCEE-----ECHHHHHHTG---GGC
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH--------hccc-----ccHhhHHHHh---cCC
Confidence            468999999998 7999999999999998 79999999876543221        1111     1233343333   357


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++||+...
T Consensus       177 DiVInaTp~  185 (277)
T 3don_A          177 DIIINTTPA  185 (277)
T ss_dssp             SEEEECCC-
T ss_pred             CEEEECccC
Confidence            999998654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.65  E-value=0.00011  Score=57.22  Aligned_cols=38  Identities=13%  Similarity=0.130  Sum_probs=33.6

Q ss_pred             CC-cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           36 KD-RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        36 ~~-k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      .+ .+++|+||+|++|...++.+...|++++.++++.++
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~  204 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN  204 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            57 899999999999999999988999999988876554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.63  E-value=0.00027  Score=55.31  Aligned_cols=74  Identities=24%  Similarity=0.315  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.+++|+|+ |++|...++.+...|++|+++++++++.+... ++    |.+.   ..|..+.+.++++.   +++|++
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~l----Ga~~---vi~~~~~~~~~~~~---~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-AL----GADE---VVNSRNADEMAAHL---KSFDFI  261 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH----TCSE---EEETTCHHHHHTTT---TCEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc----CCcE---EeccccHHHHHHhh---cCCCEE
Confidence            5889999998 88999999999899999999999888766443 22    3332   23555554333322   468999


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      |+++|.
T Consensus       262 id~~g~  267 (369)
T 1uuf_A          262 LNTVAA  267 (369)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            998875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.61  E-value=0.00012  Score=57.19  Aligned_cols=42  Identities=24%  Similarity=0.290  Sum_probs=35.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~  213 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV  213 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence            688999999999999998887766 589999999998766543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.60  E-value=0.00052  Score=53.84  Aligned_cols=77  Identities=23%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC--CHHHHHHHHHh-h-C
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR--DFDAVKTALDE-A-G  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~--~~~~v~~~~~~-~-~  110 (179)
                      .+++++|+| +|++|...++.+...| ++|+++++++++.+... +    .|.+.   ..|..  +.+++.+.+.+ . +
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~----lGa~~---vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-E----IGADL---TLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-H----TTCSE---EEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-H----cCCcE---EEeccccCcchHHHHHHHHhCC
Confidence            688999999 7999999999999999 59999999987665432 2    24432   13443  13343333332 2 2


Q ss_pred             -CCcEEEecCCC
Q 030328          111 -PVDVLVVNQGV  121 (179)
Q Consensus       111 -~id~li~~ag~  121 (179)
                       ++|++|+++|.
T Consensus       266 ~g~Dvvid~~g~  277 (380)
T 1vj0_A          266 RGADFILEATGD  277 (380)
T ss_dssp             SCEEEEEECSSC
T ss_pred             CCCcEEEECCCC
Confidence             68999999884

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.59  E-value=0.0007  Score=52.58  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC--C-HHHHHHHHHhh-C
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVR--D-FDAVKTALDEA-G  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~--~-~~~v~~~~~~~-~  110 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+.   ..|..  + .+..+++.+.. +
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~----lGa~~---vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-E----IGADL---VLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-H----TTCSE---EEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-H----hCCCE---EEcCcccccchHHHHHHHHhCC
Confidence            5889999996 8999999999888999 8999999887655332 2    24432   23444  2 33333333322 4


Q ss_pred             CCcEEEecCCC
Q 030328          111 PVDVLVVNQGV  121 (179)
Q Consensus       111 ~id~li~~ag~  121 (179)
                      ++|++|+++|.
T Consensus       242 g~D~vid~~g~  252 (356)
T 1pl8_A          242 KPEVTIECTGA  252 (356)
T ss_dssp             CCSEEEECSCC
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.59  E-value=5.7e-05  Score=57.82  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             cCCcE-EEEEcCCC-----------------c-hHHHHHHHHHHcCCeEEEEecCh
Q 030328           35 IKDRH-VFITGGSS-----------------G-IGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        35 ~~~k~-vlItGa~~-----------------~-iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      +.||+ +|||+|++                 | .|.++|+.++++|+.|+++.+..
T Consensus        34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~   89 (313)
T 1p9o_A           34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR   89 (313)
T ss_dssp             HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence            57887 99996665                 5 99999999999999999998854

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.58  E-value=0.00029  Score=54.52  Aligned_cols=76  Identities=12%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhhCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEAGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~~~i  112 (179)
                      .+++++|+|+ |++|...++.+...  |++|+++++++++.+... ++    |.+..   .|..+ .+.++++. ...++
T Consensus       170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~l----Ga~~v---i~~~~~~~~~~~~~-~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-EL----GADYV---SEMKDAESLINKLT-DGLGA  239 (344)
T ss_dssp             SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HH----TCSEE---ECHHHHHHHHHHHH-TTCCE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-Hh----CCCEE---eccccchHHHHHhh-cCCCc
Confidence            6889999999 89999999999889  999999999887665432 22    33211   23322 22222222 22268


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++|+++|.
T Consensus       240 D~vid~~g~  248 (344)
T 2h6e_A          240 SIAIDLVGT  248 (344)
T ss_dssp             EEEEESSCC
T ss_pred             cEEEECCCC
Confidence            888888873

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.56  E-value=0.00014  Score=56.68  Aligned_cols=75  Identities=24%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.+++|+|+ |++|...++.+...|++|+++++++++.+...++    .|.+.   ..|..+.+.+.+.   .+++|++
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~~---~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD----LGADD---YVIGSDQAKMSEL---ADSLDYV  248 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT----SCCSC---EEETTCHHHHHHS---TTTEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH----cCCce---eeccccHHHHHHh---cCCCCEE
Confidence            6889999996 9999999999999999999999988765543322    24332   2355554444332   2468999


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      ++++|.
T Consensus       249 id~~g~  254 (357)
T 2cf5_A          249 IDTVPV  254 (357)
T ss_dssp             EECCCS
T ss_pred             EECCCC
Confidence            999874

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.56  E-value=0.00025  Score=55.73  Aligned_cols=78  Identities=13%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             CCcEEEEEc-CCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCC
Q 030328           36 KDRHVFITG-GSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPV  112 (179)
Q Consensus        36 ~~k~vlItG-a~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~i  112 (179)
                      .+.+++|.| |+|++|...++.+...|++|+++++++++.+...+     .|.+..   .|..+.+-.+++.+.  ...+
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~-----lGa~~~---~~~~~~~~~~~v~~~t~~~g~  241 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA-----QGAVHV---CNAASPTFMQDLTEALVSTGA  241 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH-----TTCSCE---EETTSTTHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-----CCCcEE---EeCCChHHHHHHHHHhcCCCc
Confidence            578899997 89999999999999999999999998877654432     244322   344443222333222  1269


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |+++.++|.
T Consensus       242 d~v~d~~g~  250 (379)
T 3iup_A          242 TIAFDATGG  250 (379)
T ss_dssp             CEEEESCEE
T ss_pred             eEEEECCCc
Confidence            999999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.55  E-value=0.00012  Score=57.05  Aligned_cols=74  Identities=24%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH-HHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF-DAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~v~~~~~~~~~id~  114 (179)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+...+ +    |.+..   .|..+. +..+++ .  +++|+
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-l----Ga~~v---~~~~~~~~~~~~~-~--~~~D~  246 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-M----GADHY---IATLEEGDWGEKY-F--DTFDL  246 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H----TCSEE---EEGGGTSCHHHHS-C--SCEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-c----CCCEE---EcCcCchHHHHHh-h--cCCCE
Confidence            5889999999 999999999999999999999998877654332 2    33322   243332 222222 1  47899


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      +|+++|.
T Consensus       247 vid~~g~  253 (360)
T 1piw_A          247 IVVCASS  253 (360)
T ss_dssp             EEECCSC
T ss_pred             EEECCCC
Confidence            9998875

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.55  E-value=0.00046  Score=51.24  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~   70 (179)
                      .+++++++|.|+ ||+|.++++.|+..|. ++.++|++
T Consensus        25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467899999999 7899999999999997 57788765

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.54  E-value=0.00054  Score=54.22  Aligned_cols=77  Identities=26%  Similarity=0.316  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+.+++|+|+ |++|...++.+...|+ +|+++++++++.+.. +++    |.+.   ..|..+.+-.+++.+..  .++
T Consensus       213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~l----Ga~~---vi~~~~~~~~~~i~~~t~g~g~  283 (404)
T 3ip1_A          213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KEL----GADH---VIDPTKENFVEAVLDYTNGLGA  283 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH----TCSE---EECTTTSCHHHHHHHHTTTCCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc----CCCE---EEcCCCCCHHHHHHHHhCCCCC
Confidence            6889999998 8999999999999999 899999988766533 222    4432   23444433333343322  369


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |+++.++|.
T Consensus       284 D~vid~~g~  292 (404)
T 3ip1_A          284 KLFLEATGV  292 (404)
T ss_dssp             SEEEECSSC
T ss_pred             CEEEECCCC
Confidence            999999883

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.54  E-value=0.00026  Score=54.78  Aligned_cols=103  Identities=13%  Similarity=0.043  Sum_probs=60.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--e-----EEEEecCh--hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--R-----VSILARSG--EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~-----v~~~~r~~--~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .++.||||+|.+|.+++..|+.+|.  +     ++++|.++  +.++-...++..........+  ..++  +..+   .
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~--~~~~--~~~~---~   76 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDV--IATD--KEEI---A   76 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEE--EEES--CHHH---H
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCE--EEcC--CcHH---H
Confidence            5799999999999999999998875  4     88999875  234433344432111111111  1111  1122   2


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      ....|++|+.||....+.   ++.+   +.++.|+.....+.+.+
T Consensus        77 ~~daDvVvitAg~prkpG---~tR~---dll~~N~~i~~~i~~~i  115 (333)
T 5mdh_A           77 FKDLDVAILVGSMPRRDG---MERK---DLLKANVKIFKCQGAAL  115 (333)
T ss_dssp             TTTCSEEEECCSCCCCTT---CCTT---TTHHHHHHHHHHHHHHH
T ss_pred             hCCCCEEEEeCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHH
Confidence            347899999998654321   2222   23677776665555544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.50  E-value=0.00046  Score=54.09  Aligned_cols=77  Identities=26%  Similarity=0.321  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHh--hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDE--AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~--~~~  111 (179)
                      .+.+++|+|+ |++|...++.+...|+ +|+++++++++.+.. +    ..|.+..   .|..+ .+++.+.+++  .+.
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~----~lGa~~v---i~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-K----KFGVNEF---VNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-H----TTTCCEE---ECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-H----HcCCcEE---EccccCchhHHHHHHHhcCCC
Confidence            6889999998 9999999999999999 799999988876532 2    2244322   23331 1122222222  136


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|+++.++|.
T Consensus       264 ~D~vid~~g~  273 (378)
T 3uko_A          264 VDYSFECIGN  273 (378)
T ss_dssp             BSEEEECSCC
T ss_pred             CCEEEECCCC
Confidence            8999998874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.50  E-value=0.00067  Score=51.99  Aligned_cols=100  Identities=19%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++.|+||+|.+|..++..|+.+|  .++.++|+++  .+....++.... ..++....    ..++.++.++   ..|++
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~---~aDvV   72 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYL----GPEQLPDCLK---GCDVV   72 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHT---TCSEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEec----CCCCHHHHhC---CCCEE
Confidence            68999999999999999999888  6799999987  222223332211 11122110    0122334444   78999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      |+.+|......   .+..+   .+..|+.....+.+.+
T Consensus        73 vi~ag~~~~~g---~~r~d---l~~~n~~i~~~i~~~i  104 (314)
T 1mld_A           73 VIPAGVPRKPG---MTRDD---LFNTNATIVATLTAAC  104 (314)
T ss_dssp             EECCSCCCCTT---CCGGG---GHHHHHHHHHHHHHHH
T ss_pred             EECCCcCCCCC---CcHHH---HHHHHHHHHHHHHHHH
Confidence            99999754321   12111   2455555554444443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.47  E-value=0.0017  Score=50.08  Aligned_cols=76  Identities=16%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~i  112 (179)
                      .+.+++|.|+ |++|...++.+... |++|+++++++++.+... +    .|.+..   .|..+ +..+++.+.  ..++
T Consensus       171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~----lGa~~~---i~~~~-~~~~~v~~~t~g~g~  240 (345)
T 3jv7_A          171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-E----VGADAA---VKSGA-GAADAIRELTGGQGA  240 (345)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-H----TTCSEE---EECST-THHHHHHHHHGGGCE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-H----cCCCEE---EcCCC-cHHHHHHHHhCCCCC
Confidence            5889999998 99999998888777 789999999988765432 2    244322   23222 222333322  1268


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |+++.++|.
T Consensus       241 d~v~d~~G~  249 (345)
T 3jv7_A          241 TAVFDFVGA  249 (345)
T ss_dssp             EEEEESSCC
T ss_pred             eEEEECCCC
Confidence            999999883

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.47  E-value=0.001  Score=52.06  Aligned_cols=76  Identities=30%  Similarity=0.361  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH---h-hC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD---E-AG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~---~-~~  110 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.. +++    |.+.   ..|.++.+..+.+.+   . .+
T Consensus       182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l----Ga~~---vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEV----GATA---TVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH----TCSE---EECTTSSCHHHHHHSTTSSSTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc----CCCE---EECCCCcCHHHHHHhhhhccCC
Confidence            5889999998 8999999999999999 799999988765532 222    4332   234444333333333   1 23


Q ss_pred             CCcEEEecCC
Q 030328          111 PVDVLVVNQG  120 (179)
Q Consensus       111 ~id~li~~ag  120 (179)
                      ++|+++.++|
T Consensus       253 g~Dvvid~~G  262 (370)
T 4ej6_A          253 GVDVVIECAG  262 (370)
T ss_dssp             CEEEEEECSC
T ss_pred             CCCEEEECCC
Confidence            6899999887

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.46  E-value=0.0051  Score=47.14  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=62.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC--hhHHHHHHHHHHhh-----cCceEEEEEeeCCCHHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS--GEKLEEAKQSIQLA-----TGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~--~~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      .++.+++.|+|+ |.+|.++|..++.+|. +|+++|++  ++..+....++...     ...++..  .  ++.      
T Consensus         5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~--t--~d~------   73 (315)
T 3tl2_A            5 TIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG--T--SDY------   73 (315)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE--E--SCG------
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE--c--CCH------
Confidence            345678999997 9999999999999999 99999998  44444333333211     1122211  1  111      


Q ss_pred             HHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328          106 LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus       106 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                       +.....|++|..+|....+.   ++..+   .++.|+.-.-.+.+.
T Consensus        74 -~a~~~aDvVIiaag~p~kpg---~~R~d---l~~~N~~i~~~i~~~  113 (315)
T 3tl2_A           74 -ADTADSDVVVITAGIARKPG---MSRDD---LVATNSKIMKSITRD  113 (315)
T ss_dssp             -GGGTTCSEEEECCSCCCCTT---CCHHH---HHHHHHHHHHHHHHH
T ss_pred             -HHhCCCCEEEEeCCCCCCCC---CCHHH---HHHHHHHHHHHHHHH
Confidence             34457999999999754322   33333   356665444444443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.46  E-value=0.00048  Score=55.61  Aligned_cols=76  Identities=21%  Similarity=0.369  Sum_probs=58.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +.++++|.|+ |.+|..+|+.|.++|++|++++++++..++..+++      ++..+.+|-++++-++++  ...+.|.+
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~A--gi~~ad~~   72 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY------DLRVVNGHASHPDVLHEA--GAQDADML   72 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS------SCEEEESCTTCHHHHHHH--TTTTCSEE
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------CcEEEEEcCCCHHHHHhc--CCCcCCEE
Confidence            3467999999 89999999999999999999999998877654432      356788999998877655  23367877


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      |-..+
T Consensus        73 ia~t~   77 (461)
T 4g65_A           73 VAVTN   77 (461)
T ss_dssp             EECCS
T ss_pred             EEEcC
Confidence            76443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.44  E-value=0.0013  Score=51.48  Aligned_cols=77  Identities=26%  Similarity=0.330  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHh--hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDE--AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~--~~~  111 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+..   .|..+ .+++.+.+++  .+.
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~----lGa~~v---i~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-A----LGATDC---LNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-H----TTCSEE---ECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-H----hCCcEE---EccccccchHHHHHHHHhCCC
Confidence            5889999996 9999999999999999 7999999888765432 2    243322   24332 0112222221  146


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|+++|.
T Consensus       266 ~Dvvid~~G~  275 (376)
T 1e3i_A          266 VDYSLDCAGT  275 (376)
T ss_dssp             BSEEEESSCC
T ss_pred             ccEEEECCCC
Confidence            8999999874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.44  E-value=0.00016  Score=53.80  Aligned_cols=70  Identities=16%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+++ +++|.|+ ||.|++++..|.+.|+ +|++++|+.++.++..+++        ..  .+.   +++.+.++   ..
T Consensus       106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~--------~~--~~~---~~~~~~~~---~a  167 (253)
T 3u62_A          106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV--------KI--FSL---DQLDEVVK---KA  167 (253)
T ss_dssp             CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSC--------EE--EEG---GGHHHHHH---TC
T ss_pred             CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc--------cc--CCH---HHHHhhhc---CC
Confidence            3577 8999998 8999999999999998 7999999987655432211        11  122   22334444   58


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++||+...
T Consensus       168 DiVInatp~  176 (253)
T 3u62_A          168 KSLFNTTSV  176 (253)
T ss_dssp             SEEEECSST
T ss_pred             CEEEECCCC
Confidence            999998653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.44  E-value=0.0011  Score=51.86  Aligned_cols=77  Identities=23%  Similarity=0.331  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhh--CC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEA--GP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~--~~  111 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+..   .|..+ .+++.+.+++.  ++
T Consensus       191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~----lGa~~v---i~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-E----VGATEC---VNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-H----TTCSEE---ECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-H----hCCceE---ecccccchhHHHHHHHHhCCC
Confidence            6889999995 9999999999999999 7999999988765432 2    243321   24332 11222222221  36


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|+++|.
T Consensus       262 ~D~vid~~g~  271 (374)
T 2jhf_A          262 VDFSFEVIGR  271 (374)
T ss_dssp             BSEEEECSCC
T ss_pred             CcEEEECCCC
Confidence            8999998874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.43  E-value=0.00054  Score=53.51  Aligned_cols=77  Identities=21%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id  113 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... ++    |.+..   .|..+.+..+++.+.. +++|
T Consensus       190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~l----Ga~~v---i~~~~~~~~~~~~~~~~gg~D  260 (371)
T 1f8f_A          190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL----GATHV---INSKTQDPVAAIKEITDGGVN  260 (371)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH----TCSEE---EETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc----CCCEE---ecCCccCHHHHHHHhcCCCCc
Confidence            5889999996 8999999999888999 5999999887665432 22    33321   2333322222232221 2578


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|+++|.
T Consensus       261 ~vid~~g~  268 (371)
T 1f8f_A          261 FALESTGS  268 (371)
T ss_dssp             EEEECSCC
T ss_pred             EEEECCCC
Confidence            88888774

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.43  E-value=0.00025  Score=51.83  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ..++++|.|+ |.+|+.+++.|.++|+ |++++++++..++..      .+  +..+..|.++++.+++.  ...+.|.+
T Consensus         8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~------~~--~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (234)
T 2aef_A            8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR------SG--ANFVHGDPTRVSDLEKA--NVRGARAV   75 (234)
T ss_dssp             --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH------TT--CEEEESCTTCHHHHHHT--TCTTCSEE
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh------cC--CeEEEcCCCCHHHHHhc--CcchhcEE
Confidence            3567899998 8999999999999999 999999987654332      12  56678898888766544  12356766


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      |...+
T Consensus        76 i~~~~   80 (234)
T 2aef_A           76 IVDLE   80 (234)
T ss_dssp             EECCS
T ss_pred             EEcCC
Confidence            66544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.42  E-value=0.0002  Score=55.46  Aligned_cols=41  Identities=34%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+..
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  216 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDA  216 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            6889999997 9999999999999999999999988876643

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.42  E-value=0.00034  Score=50.17  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=36.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      +++|+||+|.+|.++++.|.+.|++|.+++|+++..++..++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~   43 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE   43 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            588999899999999999999999999999998876655443

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.41  E-value=0.00074  Score=52.78  Aligned_cols=77  Identities=23%  Similarity=0.296  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHh--hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDE--AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~--~~~  111 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+..   .|.++ .+++.+.+++  .+.
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~----lGa~~v---i~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-V----FGATDF---VNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-H----TTCCEE---ECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-H----hCCceE---EeccccchhHHHHHHHHhCCC
Confidence            5889999996 9999999999999999 7999999888766432 2    243321   24332 1122222222  146


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|+++|.
T Consensus       263 ~D~vid~~g~  272 (374)
T 1cdo_A          263 VDFSLECVGN  272 (374)
T ss_dssp             BSEEEECSCC
T ss_pred             CCEEEECCCC
Confidence            8999998874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.40  E-value=0.00036  Score=53.93  Aligned_cols=39  Identities=28%  Similarity=0.380  Sum_probs=35.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLE   75 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~   75 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~  203 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLA  203 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            7899999999 9999999999999999 8999999877644

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=97.39  E-value=0.00014  Score=56.55  Aligned_cols=36  Identities=28%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .+.+++|.||+|++|...++.+...|++++.+.++.
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~  202 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDR  202 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            688999999999999999998888999988776554

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.38  E-value=0.00026  Score=54.20  Aligned_cols=73  Identities=22%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+++++|+||+|++|...++.+...|++|+.+++++ +. +..++    .|.+.   ..|..+.+.+.   +...++|++
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~-~~~~~----lGa~~---~i~~~~~~~~~---~~~~g~D~v  219 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NH-AFLKA----LGAEQ---CINYHEEDFLL---AISTPVDAV  219 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HH-HHHHH----HTCSE---EEETTTSCHHH---HCCSCEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hH-HHHHH----cCCCE---EEeCCCcchhh---hhccCCCEE
Confidence            688999999999999999999999999999887543 32 22222    24432   23444332122   222467888


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      ++++|
T Consensus       220 ~d~~g  224 (321)
T 3tqh_A          220 IDLVG  224 (321)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            88776

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=97.37  E-value=0.00042  Score=53.02  Aligned_cols=41  Identities=24%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      ++ ++|+||+|++|...++.+...|++|+++++++++.+...
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~  188 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK  188 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            45 999999999999999999999999999999988766543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.35  E-value=0.001  Score=52.23  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=38.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      .+++++++|.|+ |.+|...++.+...|++|++.|+++++.+...
T Consensus       181 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  224 (381)
T 3p2y_A          181 TVKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR  224 (381)
T ss_dssp             EECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            357889999999 89999999999999999999999998766553

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.35  E-value=0.0015  Score=51.07  Aligned_cols=77  Identities=21%  Similarity=0.259  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHh--hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDE--AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~--~~~  111 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+..   .|..+ .+++.+.+++  .+.
T Consensus       191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~----lGa~~v---i~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-E----LGATEC---LNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-H----TTCSEE---ECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-H----cCCcEE---EecccccchHHHHHHHHhCCC
Confidence            5889999996 8999999999888999 7999999888765432 2    244321   23332 0122222222  136


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|.++|.
T Consensus       262 ~Dvvid~~g~  271 (373)
T 1p0f_A          262 VDYAVECAGR  271 (373)
T ss_dssp             BSEEEECSCC
T ss_pred             CCEEEECCCC
Confidence            8999998873

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.33  E-value=0.00083  Score=53.45  Aligned_cols=74  Identities=19%  Similarity=0.340  Sum_probs=55.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +.+++|.|. |.+|+.+++.|.+.|.+|++++++++..+...+     .+  +..+.+|.++++.++++  ...+.|++|
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-----~g--~~vi~GDat~~~~L~~a--gi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-----FG--MKVFYGDATRMDLLESA--GAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-----TT--CCCEESCTTCHHHHHHT--TTTTCSEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-----CC--CeEEEcCCCCHHHHHhc--CCCccCEEE
Confidence            456899998 889999999999999999999999987665432     23  34577899988766554  223567777


Q ss_pred             ecCC
Q 030328          117 VNQG  120 (179)
Q Consensus       117 ~~ag  120 (179)
                      .+.+
T Consensus        74 v~~~   77 (413)
T 3l9w_A           74 NAID   77 (413)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            6654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.32  E-value=0.00078  Score=52.60  Aligned_cols=77  Identities=25%  Similarity=0.293  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhh--CC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEA--GP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~--~~  111 (179)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+... ++    |.+..   .|.++ .+++.+.+++.  +.
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l----Ga~~v---i~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF----GATEC---INPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH----TCSEE---ECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc----CCceE---eccccccccHHHHHHHHhCCC
Confidence            5889999996 9999999999999999 7999999888765432 22    33321   23332 11222222221  36


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|+++|.
T Consensus       261 ~D~vid~~g~  270 (373)
T 2fzw_A          261 VDYSFECIGN  270 (373)
T ss_dssp             BSEEEECSCC
T ss_pred             CCEEEECCCc
Confidence            8999888874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.31  E-value=0.0012  Score=52.14  Aligned_cols=75  Identities=31%  Similarity=0.382  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH----HHHHHHHHhhC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF----DAVKTALDEAG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~----~~v~~~~~~~~  110 (179)
                      .+++++|.|+ |++|...++.+...|+ +|+++++++++.+...     ..|.+  .  .|..+.    +.+.+... ..
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-----~lGa~--~--i~~~~~~~~~~~~~~~~~-g~  253 (398)
T 2dph_A          185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLS-----DAGFE--T--IDLRNSAPLRDQIDQILG-KP  253 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-----TTTCE--E--EETTSSSCHHHHHHHHHS-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-----HcCCc--E--EcCCCcchHHHHHHHHhC-CC
Confidence            6889999997 9999999998888999 8999999987665332     23443  2  344432    22322221 12


Q ss_pred             CCcEEEecCCC
Q 030328          111 PVDVLVVNQGV  121 (179)
Q Consensus       111 ~id~li~~ag~  121 (179)
                      ++|++|.++|.
T Consensus       254 g~Dvvid~~g~  264 (398)
T 2dph_A          254 EVDCGVDAVGF  264 (398)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCCEEEECCCC
Confidence            58999999884

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.30  E-value=0.00061  Score=52.82  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+.+++|.|+ |++|...++.+...|+ +|+++++++++.+.. +++    |.+.   ..|..+.+..+++.+..  .++
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l----Ga~~---vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEY----GATD---IINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHH----TCCE---EECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHh----CCce---EEcCCCcCHHHHHHHHcCCCCC
Confidence            5889999996 8999999999999999 799999988765433 222    3332   12333322233333322  257


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |+++.++|.
T Consensus       237 D~v~d~~g~  245 (352)
T 3fpc_A          237 DKVVIAGGD  245 (352)
T ss_dssp             EEEEECSSC
T ss_pred             CEEEECCCC
Confidence            888887764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.26  E-value=0.00056  Score=53.18  Aligned_cols=72  Identities=18%  Similarity=0.273  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCCchHHHH-HHHH-HHcCCe-EEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHH--HHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLAL-AHQA-AKEGAR-VSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFD--AVKTALD  107 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~l-a~~l-~~~g~~-v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~v~~~~~  107 (179)
                      .+++++|+|+ |++|... ++.+ ...|++ |++++++++   +.+.. ++    .|.+.  +  |..+.+  ++.+.  
T Consensus       172 ~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~----lGa~~--v--~~~~~~~~~i~~~--  239 (357)
T 2b5w_A          172 DPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EE----LDATY--V--DSRQTPVEDVPDV--  239 (357)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HH----TTCEE--E--ETTTSCGGGHHHH--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HH----cCCcc--c--CCCccCHHHHHHh--
Confidence            3489999999 9999999 8888 778998 999999876   55533 22    24321  1  433211  13333  


Q ss_pred             hhCCCcEEEecCC
Q 030328          108 EAGPVDVLVVNQG  120 (179)
Q Consensus       108 ~~~~id~li~~ag  120 (179)
                       .+++|++|.++|
T Consensus       240 -~gg~Dvvid~~g  251 (357)
T 2b5w_A          240 -YEQMDFIYEATG  251 (357)
T ss_dssp             -SCCEEEEEECSC
T ss_pred             -CCCCCEEEECCC
Confidence             236788888877

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.22  E-value=0.0027  Score=50.24  Aligned_cols=44  Identities=23%  Similarity=0.278  Sum_probs=38.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      .+++.+++|.|+ |.+|...++.+...|++|+++|+++++.+...
T Consensus       187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  230 (405)
T 4dio_A          187 TVPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA  230 (405)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            357889999999 89999999999999999999999988766543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.20  E-value=0.0064  Score=46.90  Aligned_cols=80  Identities=13%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ....+++.|+|+ |.+|.+++..++.+|.  +++++|.+++.++....++...  ..........  +|.       +..
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~-------~~~   85 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDY-------SVT   85 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSG-------GGG
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCH-------HHh
Confidence            346778999998 9999999999999987  7999999988777666665421  1111111111  222       234


Q ss_pred             CCCcEEEecCCCCC
Q 030328          110 GPVDVLVVNQGVFV  123 (179)
Q Consensus       110 ~~id~li~~ag~~~  123 (179)
                      ...|++|..||...
T Consensus        86 ~~aDiVvi~aG~~~   99 (331)
T 4aj2_A           86 ANSKLVIITAGARQ   99 (331)
T ss_dssp             TTEEEEEECCSCCC
T ss_pred             CCCCEEEEccCCCC
Confidence            47899999999754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.19  E-value=0.0035  Score=49.66  Aligned_cols=42  Identities=26%  Similarity=0.283  Sum_probs=37.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      +.+++++|+|+ |.+|...++.+...|++|+++|++++..+..
T Consensus       170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          170 VPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            67899999997 8999999999999999999999998876654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.18  E-value=0.002  Score=49.81  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh-------------------hHHHHHHHHHHhh-cCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG-------------------EKLEEAKQSIQLA-TGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~-------------------~~~~~~~~~~~~~-~~~~v~~~   92 (179)
                      .+++++++|.|+ ||+|.++++.|+..|.. +.++|++.                   .+.+...+.+... +..++..+
T Consensus        31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~  109 (340)
T 3rui_A           31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  109 (340)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence            578999999999 89999999999999965 78888753                   3455555555432 35556655


Q ss_pred             EeeC
Q 030328           93 SADV   96 (179)
Q Consensus        93 ~~D~   96 (179)
                      ..++
T Consensus       110 ~~~i  113 (340)
T 3rui_A          110 KLSI  113 (340)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            5443

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.17  E-value=0.0071  Score=46.51  Aligned_cols=76  Identities=24%  Similarity=0.323  Sum_probs=49.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeE-EEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC--HHHHHHHHHhhCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARV-SILARSGEKLEEAKQSIQLATGIEVATYSADVRD--FDAVKTALDEAGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v-~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~v~~~~~~~~~i  112 (179)
                      .+++++|.|+ |++|...++.+...|+++ +++++++++.+.. +    ..|.+..+   |.++  ..+..+.+...+..
T Consensus       160 ~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-~----~lGa~~~i---~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          160 ENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALA-K----SFGAMQTF---NSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-H----HTTCSEEE---ETTTSCHHHHHHHHGGGCSS
T ss_pred             CCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHH-H----HcCCeEEE---eCCCCCHHHHHHhhcccCCc
Confidence            6889999998 899999999999999885 6778887765432 2    23444322   3332  23333333344567


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |+++.++|
T Consensus       231 d~v~d~~G  238 (346)
T 4a2c_A          231 QLILETAG  238 (346)
T ss_dssp             EEEEECSC
T ss_pred             cccccccc
Confidence            88888776

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.15  E-value=0.0071  Score=46.53  Aligned_cols=76  Identities=20%  Similarity=0.235  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhh-----cCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLA-----TGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +.+++.|+|| |.+|.+++..|+..|. +|.++|++++..+....++...     ...++.. .   +|.       +..
T Consensus         6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t---~d~-------~a~   73 (324)
T 3gvi_A            6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-A---NDY-------AAI   73 (324)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-E---SSG-------GGG
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-e---CCH-------HHH
Confidence            4678999998 9999999999999998 9999999988765444444321     1222221 1   121       334


Q ss_pred             CCCcEEEecCCCCC
Q 030328          110 GPVDVLVVNQGVFV  123 (179)
Q Consensus       110 ~~id~li~~ag~~~  123 (179)
                      ...|++|..+|...
T Consensus        74 ~~aDiVIiaag~p~   87 (324)
T 3gvi_A           74 EGADVVIVTAGVPR   87 (324)
T ss_dssp             TTCSEEEECCSCCC
T ss_pred             CCCCEEEEccCcCC
Confidence            57899999998644

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.14  E-value=0.038  Score=41.87  Aligned_cols=112  Identities=11%  Similarity=0.044  Sum_probs=65.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++.|+|| |.+|.+++..|+.+|.  +|.++|++++.++....++...   ..........  +|    .   +.....|
T Consensus         2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~---~a~~~aD   71 (294)
T 1oju_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----Y---SLLKGSE   71 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----G---GGGTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----H---HHhCCCC
Confidence            5889999 9999999999999997  8999999998765333333211   1111121111  12    1   2334689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ++|..+|....+.   ++..+   .++.|+.-.    +...+.+.+..  ....++++|
T Consensus        72 iVViaag~~~kpG---~~R~d---l~~~N~~i~----~~i~~~i~~~~--p~a~iivvs  118 (294)
T 1oju_A           72 IIVVTAGLARKPG---MTRLD---LAHKNAGII----KDIAKKIVENA--PESKILVVT  118 (294)
T ss_dssp             EEEECCCCCCCSS---CCHHH---HHHHHHHHH----HHHHHHHHTTS--TTCEEEECS
T ss_pred             EEEECCCCCCCCC---CcHHH---HHHHHHHHH----HHHHHHHHhhC--CCeEEEEeC
Confidence            9999999754321   23333   355554333    44444444432  233555554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.14  E-value=0.0036  Score=49.24  Aligned_cols=76  Identities=28%  Similarity=0.294  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHH-HHHHHhh--CC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAV-KTALDEA--GP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v-~~~~~~~--~~  111 (179)
                      .+++++|.|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+  .  .|.++.+++ +++.+..  ..
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~-~----lGa~--~--i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-A----QGFE--I--ADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-H----TTCE--E--EETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH-H----cCCc--E--EccCCcchHHHHHHHHhCCCC
Confidence            6889999995 9999999998888999 6899999887765432 2    3443  2  344432222 2222221  36


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|.++|.
T Consensus       255 ~Dvvid~~G~  264 (398)
T 1kol_A          255 VDCAVDAVGF  264 (398)
T ss_dssp             EEEEEECCCT
T ss_pred             CCEEEECCCC
Confidence            8999999884

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.12  E-value=0.03  Score=43.43  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=58.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecChh--HHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-------RVSILARSGE--KLEEAKQSIQLA-TGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~  104 (179)
                      +..-+|.|+||+|+||..++..|+....       .+.+.|.++.  .++-...++.-. ..........  ++.   .+
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~--~~~---~~   96 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT--ADP---RV   96 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE--SCH---HH
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc--CCh---HH
Confidence            3456899999999999999999997643       5888888653  223233333221 1122222222  122   22


Q ss_pred             HHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHH
Q 030328          105 ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS  146 (179)
Q Consensus       105 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~  146 (179)
                         .+...|++|..||....+.   ++.+++   ++.|+.=.
T Consensus        97 ---a~~~advVvi~aG~prkpG---mtR~DL---l~~Na~I~  129 (345)
T 4h7p_A           97 ---AFDGVAIAIMCGAFPRKAG---MERKDL---LEMNARIF  129 (345)
T ss_dssp             ---HTTTCSEEEECCCCCCCTT---CCHHHH---HHHHHHHH
T ss_pred             ---HhCCCCEEEECCCCCCCCC---CCHHHH---HHHhHHHH
Confidence               2447899999999755322   355553   66666444

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.12  E-value=0.0056  Score=47.12  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLE   75 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~   75 (179)
                      .+.+++|.|| |++|...++.+... |++|+++++++++.+
T Consensus       163 ~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~  202 (348)
T 4eez_A          163 PGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLN  202 (348)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred             CCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhh
Confidence            5889999998 78888888888765 789999999987654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.06  E-value=0.0015  Score=51.15  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=40.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      ++++|+++|.|+ |.+|..+|+.|.+.|++|++.|++++++++..++
T Consensus       170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~  215 (364)
T 1leh_A          170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE  215 (364)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            579999999998 8899999999999999999999998877766554

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.04  E-value=0.0046  Score=48.61  Aligned_cols=43  Identities=21%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++++|+|+ |.+|+..++.+...|++|+++++++++.+..
T Consensus       169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999997 8999999999999999999999998766543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.01  E-value=0.00054  Score=52.58  Aligned_cols=84  Identities=15%  Similarity=0.057  Sum_probs=53.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .++++++++|.|++.-+|+.+|+.|...|++|.+++|+..+..+..+++.   ...........++++++.+.+.   ..
T Consensus       173 ~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la---~~~~~~t~~~~t~~~~L~e~l~---~A  246 (320)
T 1edz_A          173 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLK---LNKHHVEDLGEYSEDLLKKCSL---DS  246 (320)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSS---CCCCEEEEEEECCHHHHHHHHH---HC
T ss_pred             CCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHh---hhcccccccccccHhHHHHHhc---cC
Confidence            36899999999998888999999999999999999887432211111111   0000111111134466666665   46


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |++|...|..
T Consensus       247 DIVIsAtg~p  256 (320)
T 1edz_A          247 DVVITGVPSE  256 (320)
T ss_dssp             SEEEECCCCT
T ss_pred             CEEEECCCCC
Confidence            8888887754

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=97.00  E-value=0.002  Score=53.28  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh-------------------hHHHHHHHHHHh-hcCceEEE
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG-------------------EKLEEAKQSIQL-ATGIEVAT   91 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~-~~~~~v~~   91 (179)
                      ..+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+...+.+.. .+..++..
T Consensus       323 ~kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~  401 (598)
T 3vh1_A          323 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG  401 (598)
T ss_dssp             HHHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEE
Confidence            3578899999999 8999999999999996 488887651                   355666666654 34566666


Q ss_pred             EEeeC
Q 030328           92 YSADV   96 (179)
Q Consensus        92 ~~~D~   96 (179)
                      +..++
T Consensus       402 ~~~~I  406 (598)
T 3vh1_A          402 VKLSI  406 (598)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            66543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.98  E-value=0.00097  Score=50.23  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=37.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+++||+++|.|+++-+|+.+|..|..+|++|.++.++.+.++
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~  198 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS  198 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence            4579999999999988999999999999999999988655444

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.97  E-value=0.00075  Score=51.78  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=35.7

Q ss_pred             Cc-EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           37 DR-HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        37 ~k-~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ++ +++|+||+|++|...++.+...|++|+++++++++.+..
T Consensus       150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~  191 (330)
T 1tt7_A          150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL  191 (330)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             CCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            44 799999999999999999999999999999987765543

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.95  E-value=0.002  Score=50.21  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~   70 (179)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|++
T Consensus       115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCC
Confidence            467889999999 8999999999999996 58888876

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.95  E-value=0.033  Score=42.61  Aligned_cols=75  Identities=15%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++.|+|+ |.+|.+++..++.+|.  +++++|++++.++....++...   ..........|  +       .+.+...|
T Consensus         2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~-------~~a~~~aD   71 (314)
T 3nep_X            2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D-------YGPTEDSD   71 (314)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S-------SGGGTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C-------HHHhCCCC
Confidence            5789997 9999999999999986  7999999987765444444321   11222222112  1       13345789


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|..+|...
T Consensus        72 vVii~ag~~~   81 (314)
T 3nep_X           72 VCIITAGLPR   81 (314)
T ss_dssp             EEEECCCC--
T ss_pred             EEEECCCCCC
Confidence            9999999654

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.95  E-value=0.014  Score=44.83  Aligned_cols=101  Identities=19%  Similarity=0.261  Sum_probs=62.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +.+++.|+|+ |.+|.+++..|+.+|. +++++|++++..+....++...   .+........  ++.       +....
T Consensus         4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~-------~a~~~   73 (321)
T 3p7m_A            4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--NDY-------KDLEN   73 (321)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCG-------GGGTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CCH-------HHHCC
Confidence            4568899996 9999999999999887 8999999988766554444321   1112221111  121       23447


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHH
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA  152 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~  152 (179)
                      .|++|+.+|....+.   ++..+   .++.|+.-.-.+.+.
T Consensus        74 aDvVIi~ag~p~k~G---~~R~d---l~~~N~~i~~~i~~~  108 (321)
T 3p7m_A           74 SDVVIVTAGVPRKPG---MSRDD---LLGINIKVMQTVGEG  108 (321)
T ss_dssp             CSEEEECCSCCCCTT---CCHHH---HHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCcCCCCC---CCHHH---HHHHhHHHHHHHHHH
Confidence            899999998654322   23333   355555444443333

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.88  E-value=0.0038  Score=51.81  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh-------------------hHHHHHHHHHHhh-cCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG-------------------EKLEEAKQSIQLA-TGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~-------------------~~~~~~~~~~~~~-~~~~v~~~   92 (179)
                      .+++++++|.|+ ||+|.++++.|+..|.. +.++|.+.                   .+.+...+.+... +..++..+
T Consensus       323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~  401 (615)
T 4gsl_A          323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  401 (615)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence            578999999999 89999999999999964 88888764                   2455555555433 35566666


Q ss_pred             EeeC
Q 030328           93 SADV   96 (179)
Q Consensus        93 ~~D~   96 (179)
                      ..++
T Consensus       402 ~~~I  405 (615)
T 4gsl_A          402 KLSI  405 (615)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            5443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.86  E-value=0.002  Score=48.22  Aligned_cols=43  Identities=16%  Similarity=0.175  Sum_probs=37.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ++||+++|.|+++-+|+.+|+.|..+|++|+++.++.+.+++.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~  190 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSM  190 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHH
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHh
Confidence            7999999999999999999999999999999998866555443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.86  E-value=0.0028  Score=47.98  Aligned_cols=41  Identities=29%  Similarity=0.431  Sum_probs=37.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+.+++++|.|+ |.+|+++++.+...|++|++++|++++.+
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~  192 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLA  192 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            578999999997 89999999999999999999999987544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.86  E-value=0.0028  Score=48.13  Aligned_cols=42  Identities=31%  Similarity=0.378  Sum_probs=37.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      ..+++++++|.|+ |.+|+++++.+...|++|++++|+.++.+
T Consensus       153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~  194 (300)
T 2rir_A          153 YTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLA  194 (300)
T ss_dssp             SCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4578999999997 99999999999999999999999986544

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.82  E-value=0.012  Score=45.41  Aligned_cols=77  Identities=17%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhh---c--CceEEEEEeeCCCHHHHHHHHHhh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLA---T--GIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~---~--~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      +.+++.|.|| |.+|.++|..|+..|. +|.++|++++.++.....+...   .  ..++.. .   +|.   ++.+   
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t---~d~---~ea~---   76 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E---YSY---EAAL---   76 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E---CSH---HHHH---
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e---CCH---HHHh---
Confidence            3458999998 9999999999999997 9999999987766543333211   1  112211 1   232   2233   


Q ss_pred             CCCcEEEecCCCCC
Q 030328          110 GPVDVLVVNQGVFV  123 (179)
Q Consensus       110 ~~id~li~~ag~~~  123 (179)
                      ...|++|..+|...
T Consensus        77 ~~aDiVi~a~g~p~   90 (331)
T 1pzg_A           77 TGADCVIVTAGLTK   90 (331)
T ss_dssp             TTCSEEEECCSCSS
T ss_pred             CCCCEEEEccCCCC
Confidence            36899999998654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.80  E-value=0.002  Score=47.45  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      ....+.++++.|.|+ |.+|.++|+.|++.|++|++.+|+++.
T Consensus        13 ~~~~~~~~kIgiIG~-G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGT-GTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             ------CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cccccCCCeEEEECC-CHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            344578899999985 999999999999999999999999876

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.79  E-value=0.0019  Score=49.70  Aligned_cols=71  Identities=14%  Similarity=0.141  Sum_probs=52.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .++++|.|+ |.+|+.++++|.++|. |++++++++..+ ..+       ..+..+..|.++++.+++.  ...+.|.++
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-------~~~~~i~gd~~~~~~L~~a--~i~~a~~vi  182 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR-------SGANFVHGDPTRVSDLEKA--NVRGARAVI  182 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-------TTCEEEESCTTSHHHHHHT--CSTTEEEEE
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-------CCcEEEEeCCCCHHHHHhc--ChhhccEEE
Confidence            458999997 8999999999999999 999999988765 321       2356788899888776654  122456655


Q ss_pred             ecC
Q 030328          117 VNQ  119 (179)
Q Consensus       117 ~~a  119 (179)
                      ...
T Consensus       183 ~~~  185 (336)
T 1lnq_A          183 VDL  185 (336)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            544

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.79  E-value=0.0029  Score=47.47  Aligned_cols=68  Identities=18%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+++++|.|+ ||.|++++..|.+.|+ +|+++.|+.++.++..+++.    ...   ..+.          + ....|+
T Consensus       118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~----~~~---~~~~----------~-~~~~Di  178 (271)
T 1npy_A          118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG----YAY---INSL----------E-NQQADI  178 (271)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT----CEE---ESCC----------T-TCCCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC----Ccc---chhh----------h-cccCCE
Confidence            4688999998 8999999999999997 69999999888777765542    211   1011          1 236899


Q ss_pred             EEecCCCC
Q 030328          115 LVVNQGVF  122 (179)
Q Consensus       115 li~~ag~~  122 (179)
                      +||+....
T Consensus       179 vInaTp~g  186 (271)
T 1npy_A          179 LVNVTSIG  186 (271)
T ss_dssp             EEECSSTT
T ss_pred             EEECCCCC
Confidence            99987644

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.78  E-value=0.032  Score=42.69  Aligned_cols=75  Identities=16%  Similarity=0.299  Sum_probs=51.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++.|+|| |.+|.+++..++.++.  ++.+.|.++++++....++...  ....+... .|  +       .+.+...|
T Consensus         6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~-~~--~-------~~a~~~aD   74 (318)
T 1ez4_A            6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY-SG--E-------YSDCKDAD   74 (318)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE-EC--C-------GGGGTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEE-EC--C-------HHHhCCCC
Confidence            58999999 9999999999998885  7999999988777655555422  11222222 22  1       22345789


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|..+|...
T Consensus        75 vVii~ag~~~   84 (318)
T 1ez4_A           75 LVVITAGAPQ   84 (318)
T ss_dssp             EEEECCCC--
T ss_pred             EEEECCCCCC
Confidence            9999998644

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.78  E-value=0.097  Score=40.28  Aligned_cols=78  Identities=13%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh--cCceEEEE-EeeCCCHHHHHHHHHhhC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA--TGIEVATY-SADVRDFDAVKTALDEAG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~-~~D~~~~~~v~~~~~~~~  110 (179)
                      ..+++.|+|+ |.+|..++..++.+|.  +++++|.+++..+....++...  ........ ..|.          +...
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~----------~~~~   88 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY----------SVSA   88 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS----------CSCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH----------HHhC
Confidence            4678999999 9999999999999997  7999999988766655554321  11111111 1221          1244


Q ss_pred             CCcEEEecCCCCCC
Q 030328          111 PVDVLVVNQGVFVP  124 (179)
Q Consensus       111 ~id~li~~ag~~~~  124 (179)
                      ..|++|..||....
T Consensus        89 daDiVIitaG~p~k  102 (330)
T 3ldh_A           89 GSKLVVITAGARQQ  102 (330)
T ss_dssp             SCSEEEECCSCCCC
T ss_pred             CCCEEEEeCCCCCC
Confidence            78999999997543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.78  E-value=0.004  Score=46.79  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      -+++.|.|+ |.+|..+|+.|++.|++|++.+++++..++..+.
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            467888887 8899999999999999999999999877666554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.77  E-value=0.0034  Score=49.00  Aligned_cols=42  Identities=10%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      +++++.|.|. |.+|..+|+.|++.|++|.+.+|+++..++..
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~   62 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGHECVVYDLNVNAVQALE   62 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            4678999986 99999999999999999999999988766543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.76  E-value=0.0028  Score=48.06  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=37.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+++||+++|.|+++-+|+.+|..|..+|++|.++.++...++
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~  203 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED  203 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence            4579999999999888999999999999999999988554443

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.75  E-value=0.0022  Score=48.11  Aligned_cols=72  Identities=24%  Similarity=0.344  Sum_probs=50.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+++++++|.|+ |++|+++++.|.+.|++|++++|++++.++..++    .+  +..  .+  +   +.+.+   ...|
T Consensus       126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----~g--~~~--~~--~---~~~~~---~~aD  188 (275)
T 2hk9_A          126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----FP--LEV--VN--S---PEEVI---DKVQ  188 (275)
T ss_dssp             TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----SC--EEE--CS--C---GGGTG---GGCS
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----cC--Cee--eh--h---HHhhh---cCCC
Confidence            467899999997 7999999999999999999999998765544322    12  111  11  1   22222   3579


Q ss_pred             EEEecCCCC
Q 030328          114 VLVVNQGVF  122 (179)
Q Consensus       114 ~li~~ag~~  122 (179)
                      ++|++....
T Consensus       189 iVi~atp~~  197 (275)
T 2hk9_A          189 VIVNTTSVG  197 (275)
T ss_dssp             EEEECSSTT
T ss_pred             EEEEeCCCC
Confidence            999987654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.74  E-value=0.0024  Score=48.11  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=37.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+++||+++|.|+++-+|+.+|..|...|++|.++.++...++
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~  199 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA  199 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH
Confidence            4579999999999888999999999999999999887654444

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.71  E-value=0.035  Score=42.67  Aligned_cols=77  Identities=17%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +..++.|+|| |.+|.+++..++.++.  ++.++|.++++++....++...  ....+... .|  +       .+.+..
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~~--~-------~~a~~~   76 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY-SA--E-------YSDAKD   76 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-EC--C-------GGGGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEE-EC--C-------HHHhCC
Confidence            3468999999 9999999999998885  6999999988776655555321  11222222 22  1       122346


Q ss_pred             CcEEEecCCCCC
Q 030328          112 VDVLVVNQGVFV  123 (179)
Q Consensus       112 id~li~~ag~~~  123 (179)
                      .|++|..+|...
T Consensus        77 aDvVii~ag~~~   88 (326)
T 2zqz_A           77 ADLVVITAGAPQ   88 (326)
T ss_dssp             CSEEEECCCCC-
T ss_pred             CCEEEEcCCCCC
Confidence            899999998644

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.71  E-value=0.057  Score=41.27  Aligned_cols=77  Identities=18%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      +..++.|+|+ |.+|.+++..++.+|.  ++.++|.++++++....++...   .+..+... .|  +       .+.+.
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~~--~-------~~a~~   73 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK-AG--E-------YSDCH   73 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEE-EC--C-------GGGGT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEE-eC--C-------HHHhC
Confidence            4468999999 9999999999999884  7999999987665443433221   11222222 22  1       22344


Q ss_pred             CCcEEEecCCCCC
Q 030328          111 PVDVLVVNQGVFV  123 (179)
Q Consensus       111 ~id~li~~ag~~~  123 (179)
                      ..|++|..+|...
T Consensus        74 ~aDvVvi~ag~~~   86 (317)
T 3d0o_A           74 DADLVVICAGAAQ   86 (317)
T ss_dssp             TCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            7899999998754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.70  E-value=0.018  Score=44.06  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..++.|+|+ |.+|..++..++.+|.  ++.++|.++++++....++....  ...+.     ++. .+    .+.+...
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~-----i~~-~~----~~a~~~a   75 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMS-----LYA-GD----YSDVKDC   75 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEE-----EC---C----GGGGTTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeE-----EEE-CC----HHHhCCC
Confidence            357899998 9999999999999987  89999999876554444443211  11221     121 11    2235578


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      |++|..+|.....   ..+.+   +.+..|+.-...+.+..
T Consensus        76 DvVii~~g~p~k~---g~~r~---dl~~~n~~i~~~i~~~i  110 (318)
T 1y6j_A           76 DVIVVTAGANRKP---GETRL---DLAKKNVMIAKEVTQNI  110 (318)
T ss_dssp             SEEEECCCC---------CHH---HHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCC---CcCHH---HHHHhhHHHHHHHHHHH
Confidence            9999999864321   12222   23555555444444443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.69  E-value=0.0053  Score=46.50  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=36.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ..+++.|.|+ |.+|.++|..|++.|++|++++++++..++.
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            3467999998 9999999999999999999999998876654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.66  E-value=0.0025  Score=48.01  Aligned_cols=43  Identities=19%  Similarity=0.233  Sum_probs=37.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      .+++||+++|.|+++-+|+.+|..|..+|++|.++.++...++
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~  199 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK  199 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence            4579999999999888999999999999999998887644433

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.65  E-value=0.0039  Score=46.30  Aligned_cols=69  Identities=22%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++++ +++|.|+ |++|+++++.|.+.|++|.+++|+.++.++..++.    +..       ..+.   ++.    ...|
T Consensus       114 ~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----~~~-------~~~~---~~~----~~~D  173 (263)
T 2d5c_A          114 PLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----GLR-------AVPL---EKA----REAR  173 (263)
T ss_dssp             CCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----TCE-------ECCG---GGG----GGCS
T ss_pred             CCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----ccc-------hhhH---hhc----cCCC
Confidence            4678 9999998 77999999999999999999999987766655443    221       1122   222    2578


Q ss_pred             EEEecCCCC
Q 030328          114 VLVVNQGVF  122 (179)
Q Consensus       114 ~li~~ag~~  122 (179)
                      ++|++....
T Consensus       174 ivi~~tp~~  182 (263)
T 2d5c_A          174 LLVNATRVG  182 (263)
T ss_dssp             EEEECSSTT
T ss_pred             EEEEccCCC
Confidence            888887654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.63  E-value=0.013  Score=48.24  Aligned_cols=73  Identities=8%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ..++++|.|+ |..|+.++++|.+.|.++++++.+++..++..+.      ..+..+.+|.++++.++++-  ..+.|.+
T Consensus       126 ~~~hviI~G~-g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~------~~~~~i~Gd~~~~~~L~~a~--i~~a~~v  196 (565)
T 4gx0_A          126 TRGHILIFGI-DPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQ------EGFKVVYGSPTDAHVLAGLR--VAAARSI  196 (565)
T ss_dssp             CCSCEEEESC-CHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHS------CSSEEEESCTTCHHHHHHTT--GGGCSEE
T ss_pred             cCCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh------cCCeEEEeCCCCHHHHHhcC--cccCCEE
Confidence            4568999998 7899999999999999999999998876554331      13567788988887766541  1245555


Q ss_pred             Ee
Q 030328          116 VV  117 (179)
Q Consensus       116 i~  117 (179)
                      |-
T Consensus       197 i~  198 (565)
T 4gx0_A          197 IA  198 (565)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.62  E-value=0.0082  Score=45.99  Aligned_cols=40  Identities=20%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ...+.+|++.|.|. |.||+++|+.+...|++|++.+|+++
T Consensus       134 ~~~l~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          134 EYTREEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             CCCSTTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCCcCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            34688999999998 89999999999999999999998764

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.62  E-value=0.0074  Score=47.99  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +.+.+|+++|.|+ |.+|+.+++.+.+.|+++++++.++.....   ..    ..  ..+..|..|.+.+.++.+   ++
T Consensus        31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~---~~----ad--~~~~~~~~d~~~l~~~a~---~~   97 (419)
T 4e4t_A           31 PILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAG---AV----AD--RHLRAAYDDEAALAELAG---LC   97 (419)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHH---HH----SS--EEECCCTTCHHHHHHHHH---HC
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchh---hh----CC--EEEECCcCCHHHHHHHHh---cC
Confidence            4567999999997 689999999999999999999876543211   11    12  245688899998888875   57


Q ss_pred             cEEEe
Q 030328          113 DVLVV  117 (179)
Q Consensus       113 d~li~  117 (179)
                      |+++.
T Consensus        98 D~V~~  102 (419)
T 4e4t_A           98 EAVST  102 (419)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            88773

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.61  E-value=0.0047  Score=48.39  Aligned_cols=97  Identities=12%  Similarity=0.015  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-----eEEEEecChh----HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-----RVSILARSGE----KLEEAKQSIQLATGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-----~v~~~~r~~~----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      ...++.|+||+|.+|.+++..++.++.     .+.+++.+.+    .++-...++.-........  ..+++.     -.
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~--v~i~~~-----~y  103 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLRE--VSIGID-----PY  103 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEE--EEEESC-----HH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCC--cEEecC-----CH
Confidence            356899999999999999999998763     2666654433    2333333333111111111  112211     12


Q ss_pred             HhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhH
Q 030328          107 DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIG  145 (179)
Q Consensus       107 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~  145 (179)
                      +.+...|++|..||....+.   ++..+   .++.|+.=
T Consensus       104 ~~~~daDvVVitag~prkpG---~tR~D---Ll~~N~~I  136 (375)
T 7mdh_A          104 EVFEDVDWALLIGAKPRGPG---MERAA---LLDINGQI  136 (375)
T ss_dssp             HHTTTCSEEEECCCCCCCTT---CCHHH---HHHHHHHH
T ss_pred             HHhCCCCEEEEcCCCCCCCC---CCHHH---HHHHHHHH
Confidence            33447899999998644221   34443   36666543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.61  E-value=0.15  Score=38.62  Aligned_cols=97  Identities=10%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++.|+|| |++|.++|..|..++.  ++.++|.+++..+-...++...   .+........  .|.       +....-|
T Consensus         2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~-------~~~~~aD   71 (294)
T 2x0j_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY-------SLLKGSE   71 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCG-------GGGTTCS
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCH-------HHhCCCC
Confidence            5778896 9999999999998873  4999999887655444444321   1222222222  122       2244789


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHH
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK  151 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~  151 (179)
                      ++|..||....+.   ++.+++   ++.|+.=.-.+.+
T Consensus        72 vVvitAG~prkpG---mtR~dL---l~~Na~I~~~i~~  103 (294)
T 2x0j_A           72 IIVVTAGLARKPG---MTRLDL---AHKNAGIIKDIAK  103 (294)
T ss_dssp             EEEECCCCCCCSS---SCHHHH---HHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCC---CchHHH---HHHHHHHHHHHHH
Confidence            9999999755332   355553   6667654433333

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.61  E-value=0.014  Score=45.62  Aligned_cols=71  Identities=23%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..+.+|+++|.|+ |.+|+.+++.+.+.|++++++|.++....       .....  ..+..|..|.+.+.++.++   .
T Consensus         8 ~~~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~-------~~~ad--~~~~~~~~d~~~l~~~~~~---~   74 (377)
T 3orq_A            8 KLKFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPC-------RYVAH--EFIQAKYDDEKALNQLGQK---C   74 (377)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTT-------GGGSS--EEEECCTTCHHHHHHHHHH---C
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChh-------hhhCC--EEEECCCCCHHHHHHHHHh---C
Confidence            3457899999997 78999999999999999999998754211       11112  3456889999988888774   6


Q ss_pred             cEEE
Q 030328          113 DVLV  116 (179)
Q Consensus       113 d~li  116 (179)
                      |++.
T Consensus        75 dvi~   78 (377)
T 3orq_A           75 DVIT   78 (377)
T ss_dssp             SEEE
T ss_pred             Ccce
Confidence            7653

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.60  E-value=0.0038  Score=47.04  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=39.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      .++++|+++|.|++.-+|+.+|+.|...|++|.+++++.+.+++..
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~  200 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV  200 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHh
Confidence            4689999999999888999999999999999999988776554443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.59  E-value=0.0044  Score=46.53  Aligned_cols=41  Identities=12%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      +++.|.|++|.+|.++++.|.+.|++|++++|+++..++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~   52 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQ   52 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            58999999999999999999999999999999987766543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.58  E-value=0.048  Score=41.39  Aligned_cols=74  Identities=15%  Similarity=0.247  Sum_probs=47.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++.|+|+ |.+|..++..|+.+|.  +|.++|++++.++....++....  ....... .  ++.       +.....|+
T Consensus         2 kI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~-~--~~~-------~a~~~aDv   70 (304)
T 2v6b_A            2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVW-H--GGH-------SELADAQV   70 (304)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEE-E--ECG-------GGGTTCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEE-E--CCH-------HHhCCCCE
Confidence            6889998 9999999999999998  89999999876654433332111  0111111 1  121       23457899


Q ss_pred             EEecCCCCC
Q 030328          115 LVVNQGVFV  123 (179)
Q Consensus       115 li~~ag~~~  123 (179)
                      +|..++...
T Consensus        71 VIi~~~~~~   79 (304)
T 2v6b_A           71 VILTAGANQ   79 (304)
T ss_dssp             EEECC----
T ss_pred             EEEcCCCCC
Confidence            999998543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.55  E-value=0.017  Score=43.40  Aligned_cols=43  Identities=21%  Similarity=0.334  Sum_probs=37.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCC---eEEEEecChhHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGA---RVSILARSGEKLEEAKQS   80 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~   80 (179)
                      .+++.|.|+ |.+|.++++.|.+.|+   +|.+++|++++.++..++
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~   48 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK   48 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH
Confidence            467888888 9999999999999998   899999999887766553

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=96.50  E-value=0.0014  Score=56.32  Aligned_cols=76  Identities=22%  Similarity=0.272  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id  113 (179)
                      .|.++||.||+|++|.+.++.....|++|+++++++ +.+.    +.  .+.+..   .|..+.+-.+++.+.  ..++|
T Consensus       345 ~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~----l~--lga~~v---~~~~~~~~~~~i~~~t~g~GvD  414 (795)
T 3slk_A          345 PGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQA----VE--LSREHL---ASSRTCDFEQQFLGATGGRGVD  414 (795)
T ss_dssp             TTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGG----SC--SCGGGE---ECSSSSTHHHHHHHHSCSSCCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhh----hh--cChhhe---eecCChhHHHHHHHHcCCCCeE
Confidence            689999999999999999999999999999998765 2211    11  233221   233333333333332  23699


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      +++++.|.
T Consensus       415 vVld~~gg  422 (795)
T 3slk_A          415 VVLNSLAG  422 (795)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCc
Confidence            99998763

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.49  E-value=0.0044  Score=44.63  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .++++.|.| .|.+|.++++.|.+.|++|.+++|+++..++
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~   66 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTAR   66 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHH
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            456799999 6999999999999999999999999876543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.47  E-value=0.056  Score=41.12  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++.|+|| |.+|..++..++.+|. +|.++|.++++++....++...   ..........  +|.       +.....|
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~-------~a~~~aD   72 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNY-------ADTANSD   72 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCG-------GGGTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CCH-------HHHCCCC
Confidence            57999999 9999999999999996 8999999887766544444321   1111111110  221       2244789


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|..+|...
T Consensus        73 ~Vi~a~g~p~   82 (309)
T 1ur5_A           73 VIVVTSGAPR   82 (309)
T ss_dssp             EEEECCCC--
T ss_pred             EEEEcCCCCC
Confidence            9999998644

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=96.47  E-value=0.13  Score=39.20  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=58.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc-C--CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKE-G--ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~-g--~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++.|+||+|.+|.+++..|..+ +  .++.++|.++ ..+-...++.. ...........-++   ..+.   +...|++
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~-~~~~~~v~~~~~~~---~~~~---~~~aDiv   73 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSH-IPTAVKIKGFSGED---ATPA---LEGADVV   73 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHT-SCSSEEEEEECSSC---CHHH---HTTCSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhC-CCCCceEEEecCCC---cHHH---hCCCCEE
Confidence            6889999999999999999876 5  4689999987 33323333321 11222211110011   1122   3378999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      |..||....+.   ++.++   .++.|+.-...+.+..
T Consensus        74 ii~ag~~rkpG---~~R~d---ll~~N~~I~~~i~~~i  105 (312)
T 3hhp_A           74 LISAGVARKPG---MDRSD---LFNVNAGIVKNLVQQV  105 (312)
T ss_dssp             EECCSCSCCTT---CCHHH---HHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCC---CCHHH---HHHHHHHHHHHHHHHH
Confidence            99999754321   34443   4666665444444443

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.44  E-value=0.005  Score=46.69  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=38.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE   76 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~   76 (179)
                      .++++|+++|.|++.-+|+.+|+.|...|++|.+++++.+.+++
T Consensus       161 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~  204 (301)
T 1a4i_A          161 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE  204 (301)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHH
Confidence            46899999999998889999999999999999999876655443

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.43  E-value=0.0076  Score=46.76  Aligned_cols=63  Identities=17%  Similarity=0.344  Sum_probs=45.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh-------------------hHHHHHHHHHHh-hcCceEEEE
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG-------------------EKLEEAKQSIQL-ATGIEVATY   92 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~-~~~~~v~~~   92 (179)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+...+.+.. ++..++..+
T Consensus        33 ~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~  111 (346)
T 1y8q_A           33 RLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD  111 (346)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence            467899999998 8999999999999997 588886532                   245555555554 335566666


Q ss_pred             EeeCC
Q 030328           93 SADVR   97 (179)
Q Consensus        93 ~~D~~   97 (179)
                      ..+++
T Consensus       112 ~~~~~  116 (346)
T 1y8q_A          112 TEDIE  116 (346)
T ss_dssp             CSCGG
T ss_pred             ecccC
Confidence            55553

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.41  E-value=0.0061  Score=46.39  Aligned_cols=43  Identities=23%  Similarity=0.203  Sum_probs=36.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      .+.+++.|.|+ |.+|..+|+.|++.|++|.+.+|+++..++..
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   61 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV   61 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            34568888887 89999999999999999999999988766554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.37  E-value=0.0046  Score=47.05  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+++++|.|+ |++|...++.+...|++|++++ ++++.+..
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~  181 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALA  181 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH
Confidence            6899999999 9999999999999999999999 66655543

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.36  E-value=0.0088  Score=47.85  Aligned_cols=62  Identities=18%  Similarity=0.294  Sum_probs=43.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh-------------------hHHHHHHHHHHh-hcCceEEEEE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSG-------------------EKLEEAKQSIQL-ATGIEVATYS   93 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~-~~~~~v~~~~   93 (179)
                      +++++++|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+...+.+.. ++..++..+.
T Consensus        38 L~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~  116 (434)
T 1tt5_B           38 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  116 (434)
T ss_dssp             HHTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEE
T ss_pred             hcCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence            46889999998 8999999999999996 488887542                   234455555543 3355566666


Q ss_pred             eeCC
Q 030328           94 ADVR   97 (179)
Q Consensus        94 ~D~~   97 (179)
                      .+++
T Consensus       117 ~~i~  120 (434)
T 1tt5_B          117 NKIQ  120 (434)
T ss_dssp             SCGG
T ss_pred             cccc
Confidence            5554

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.35  E-value=0.0084  Score=45.57  Aligned_cols=44  Identities=27%  Similarity=0.283  Sum_probs=37.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      ...+++.|.|. |.+|.++|+.|++.|++|++.+|+++..++..+
T Consensus         7 ~~~~~IgiIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~   50 (306)
T 3l6d_A            7 SFEFDVSVIGL-GAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA   50 (306)
T ss_dssp             CCSCSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34567888886 999999999999999999999999987765543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.33  E-value=0.0083  Score=45.46  Aligned_cols=43  Identities=19%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      ..+++.|.|+ |.+|..+++.|++.|++|.+.+|+++..++..+
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~   48 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGLSTWGADLNPQACANLLA   48 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence            3467888886 899999999999999999999999987766544

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.29  E-value=0.013  Score=56.22  Aligned_cols=81  Identities=25%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      .|.++||.||+|++|.+.++.....|++|+++++++++.+...+... ..+...   ..|..+.+-.+++.+..  .++|
T Consensus      1667 ~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~-~lga~~---v~~~~~~~~~~~i~~~t~g~GvD 1742 (2512)
T 2vz8_A         1667 PGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFP-QLDETC---FANSRDTSFEQHVLRHTAGKGVD 1742 (2512)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-TCCSTT---EEESSSSHHHHHHHHTTTSCCEE
T ss_pred             CCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcC-CCCceE---EecCCCHHHHHHHHHhcCCCCce
Confidence            68999999999999999999988999999999998876654443211 012221   12333333333333321  2578


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      +++++.|
T Consensus      1743 vVld~~g 1749 (2512)
T 2vz8_A         1743 LVLNSLA 1749 (2512)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            8887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	2e-33
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	8e-31
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	9e-31
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	3e-30
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	3e-30
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	4e-30
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	7e-30
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	3e-29
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	6e-29
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	1e-28
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	3e-28
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	3e-28
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	3e-28
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	6e-27
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	8e-27
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	8e-27
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	8e-27
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	1e-26
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	1e-26
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	2e-26
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	5e-26
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	9e-26
d2bd0a1	240	c.2.1.2 (A:2-241) Bacterial sepiapterin reductase	7e-25
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	1e-24
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	2e-24
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	4e-24
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	4e-24
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	6e-24
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	2e-23
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	3e-23
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	5e-23
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	8e-23
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	8e-23
d1edoa_	244	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	1e-22
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	1e-22
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	2e-22
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	2e-22
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	3e-22
d1x1ta1	260	c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge	2e-21
d1zmta1	252	c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag	2e-21
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	2e-21
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-21
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	6e-21
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	6e-21
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	6e-21
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	1e-20
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	3e-20
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	9e-20
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	1e-19
d1snya_	248	c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly	3e-19
d1uaya_	241	c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena	3e-19
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	2e-18
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	3e-18
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	2e-16
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	4e-16
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	1e-15
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	2e-15
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	3e-15
d1e7wa_	284	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	4e-15
d1ulua_	256	c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph	5e-15
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	5e-12
d2pd4a1	274	c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte	2e-11
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	1e-10
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	2e-10
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	4e-10
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	2e-09
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	3e-09
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	8e-09
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	1e-08
d1d7oa_	297	c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B	2e-08
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	7e-08
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	2e-07
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	3e-07
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	3e-07
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	3e-07
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	4e-06
d1uh5a_	329	c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite	5e-06
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	8e-06
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	9e-06
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-05
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	2e-05
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	2e-05
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	2e-05
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	3e-05
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	3e-05
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	1e-04
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	1e-04
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	2e-04
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	4e-04
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	4e-04
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	5e-04
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	0.001
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	0.002

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (293), Expect = 2e-33
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 6/149 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ-LATGIEVATYSA 94
           +DR   +TG S GIG A+A    ++G +V   AR+   +EE     +       +  Y  
Sbjct: 9   RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC 68

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+ + + + +           VD+ + N G+  P  L   S    + M +VN++      
Sbjct: 69  DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 128

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + A   +K+R       I  ++S +G   
Sbjct: 129 REAYQSMKERNVDD-GHIININSMSGHRV 156

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 8e-31
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  +    V ITG   GIG   A++ AK  +++ +   +   LEE     +   G +V T
Sbjct: 2   RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK-GLGAKVHT 60

Query: 92  YSADVRDFDAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           +  D  + + + ++      E G V +LV N GV    +L      ++    +VN++  F
Sbjct: 61  FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 120

Query: 148 HMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              KA LP + K  +G    I  ++S AG V 
Sbjct: 121 WTTKAFLPAMTKNNHG---HIVTVASAAGHVS 149

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score =  109 bits (275), Expect = 9e-31
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           KD+   ITGG++GIG A+A + A EGA ++I         EA        G  V T   D
Sbjct: 4   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR---NLGRRVLTVKCD 60

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V     V+    +     G  D+LV N G++     +  + ++ +   ++N+   F M K
Sbjct: 61  VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAK 120

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A +P +K+   G   +   ++S    + 
Sbjct: 121 AFVPGMKRNGWGRIIN---LTSTTYWLK 145

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score =  108 bits (272), Expect = 3e-30
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V +TGG+ GIG A+A   A+EGA V++     E  E A+        I  A +  D
Sbjct: 4   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA-------IGGAFFQVD 56

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D       ++EA    G VDVLV N  +  PG      L E R +++VN+    H+  
Sbjct: 57  LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSA 116

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
            A   ++K    G  +I  ++S  G   
Sbjct: 117 LAAREMRKV---GGGAIVNVASVQGLFA 141

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (272), Expect = 3e-30
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 9/153 (5%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  +K + V +TGG+ GIG A+  + A  GA +   AR+  +L E     Q   G +V  
Sbjct: 3   RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ-KKGFQVTG 61

Query: 92  YSADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
              D       +  +        G +D+L+ N G          + ++    I  N+  +
Sbjct: 62  SVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESA 121

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +H+ + A PL+K     G  +I  MSS AG V 
Sbjct: 122 YHLSQLAHPLLKAS---GCGNIIFMSSIAGVVS 151

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 4e-30
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +  R V +TG   GIG          GARV  ++R+   L+   +         +     
Sbjct: 5   LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----GIEPVCV 59

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           D+ D++A + AL   GPVD+LV N  V +       + +      +VN+     + +   
Sbjct: 60  DLGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVA 119

Query: 155 PLIKKRQNGGPASIALMSSQAGQV 178
             +  R   G  +I  +SSQ  Q 
Sbjct: 120 RGLIARGVPG--AIVNVSSQCSQR 141

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  108 bits (270), Expect = 7e-30
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATYS 93
            ++ V ITG S+GIG   A   A+EGA V+I  RS E+LEE +Q I  +  +  +V +  
Sbjct: 4   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 63

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEV----QSLDEVRLMIDVNIIG 145
           ADV   D     ++      G +DVLV N G  +P         Q +D     + +N+  
Sbjct: 64  ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 123

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              M K   P +   +       ++++    Q  
Sbjct: 124 VIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPD 157

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 3e-29
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYS 93
           +  +   +TG + GIG A A     +GA+V+++  + E   + K ++ +     +     
Sbjct: 1   VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 60

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D   ++    +     G +D+LV N GV      E          + +N++     
Sbjct: 61  CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEK--------TLQINLVSVISG 112

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
               L  + K+  G    I  MSS AG + 
Sbjct: 113 TYLGLDYMSKQNGGEGGIIINMSSLAGLMP 142

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score =  105 bits (263), Expect = 6e-29
 Identities = 33/153 (21%), Positives = 71/153 (46%), Gaps = 9/153 (5%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  ++     +TGGS GIG  +  + A  GA V   +R+ ++L +     + + G +V  
Sbjct: 3   RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR-SKGFKVEA 61

Query: 92  YSADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
              D+      +  ++       G +++LV N G+ +  E +  ++++  L++ +N   +
Sbjct: 62  SVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAA 121

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +H+   A P +K  + G       +SS +G + 
Sbjct: 122 YHLSVLAHPFLKASERGNVVF---ISSVSGALA 151

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 1e-28
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
                 +TG   GIG          GA+V  + R+   L    +         +     D
Sbjct: 4   SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP-----GIEPVCVD 58

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           + D+DA + AL   GPVD+LV N  + +       + +       VN+   F + +    
Sbjct: 59  LGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVAR 118

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +  R   G   I  +SS    V 
Sbjct: 119 DMINRGVPGS--IVNVSSMVAHVT 140

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score =  103 bits (258), Expect = 3e-28
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITGG+ GIGLA+A +  +EGA+V I  R  +  E+A +S+   T  ++  +  D
Sbjct: 5   DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV--GTPDQIQFFQHD 62

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
             D D      D      GPV  LV N G+ V   +E  +  E R ++ VN+ G F   +
Sbjct: 63  SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  +K +  G       MSS  G VG
Sbjct: 123 LGIQRMKNKGLGASIIN--MSSIEGFVG 148

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  103 bits (259), Expect = 3e-28
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATYS 93
            ++   ITG S+GIG A A   A+EGA+V+I  R  E+LEE +Q I  A  +   V +  
Sbjct: 4   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 63

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE----LEVQSLDEVRLMIDVNIIG 145
           ADV         L       G +D+LV N G  +P         QS++     +++N+  
Sbjct: 64  ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123

Query: 146 SFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
              + K A+P +   +       ++ S       
Sbjct: 124 VIALTKKAVPHLSSTKGEIVNISSIASGLHATPD 157

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score =  103 bits (258), Expect = 3e-28
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           + +++V       GIGL  + +  K   +  ++    E      +   +   + +  ++ 
Sbjct: 3   LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62

Query: 95  DVRDFDA-----VKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           DV    A     +K   D+   VD+L+   G+    ++E          I +N  G  + 
Sbjct: 63  DVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIE--------RTIAINFTGLVNT 114

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             A L    KR+ G    IA + S  G   
Sbjct: 115 TTAILDFWDKRKGGPGGIIANICSVTGFNA 144

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score =  100 bits (249), Expect = 6e-27
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            ++ + +TGG+ GIGLA     A  GA V+++ RS     E  + +    G++   Y  D
Sbjct: 8   VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCD 67

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V + D V   + +     GP+  L+ N GV V       + ++   + DVN+ G F+  +
Sbjct: 68  VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCR 127

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A   L  ++Q  G  SI + SS + Q+ 
Sbjct: 128 AVAKLWLQKQQKG--SIVVTSSMSSQII 153

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score =  100 bits (249), Expect = 8e-27
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 12/148 (8%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TGG+SG+GL +      EGA+V+    +    ++    +    G        D
Sbjct: 5   QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRHD 60

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V         +       G ++VLV N G+ +PG++E   L++   ++ +N    F   +
Sbjct: 61  VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQ 120

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             +  +K  + GG  SI  M+S +  + 
Sbjct: 121 QGIAAMK--ETGG--SIINMASVSSWLP 144

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 99.7 bits (248), Expect = 8e-27
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 4/119 (3%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ R   +TGGS G+G  +A   A+ G  V + +R+ E+  EA Q +    G+E   +  
Sbjct: 3   LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 62

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           DV +++ VK  L+      G +D +V   G+      E   LDE R +I+VN+ G++++
Sbjct: 63  DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYV 121

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score =  100 bits (249), Expect = 8e-27
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +D+   ITGG+ GIG   A    + GA+V I   + +  ++   +I       ++    D
Sbjct: 5   QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDV--ISFVHCD 62

Query: 96  VRDFDAVKTALD----EAGPVDVLVVNQGV--FVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           V   + V+  +D    + G +D++  N GV    P  +     ++ + ++D+N+ G+F +
Sbjct: 63  VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 122

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            K A  ++   + G     A +SS     G
Sbjct: 123 AKHAARVMIPAKKGSIVFTASISSFTAGEG 152

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (250), Expect = 1e-26
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSI---------LARSGEKLEEAKQSIQLATG 86
             R V +TG   G+G A A   A+ GA V +         + +     ++  + I+   G
Sbjct: 6   DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG 65

Query: 87  IEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
             VA Y +       VKTALD  G +DV+V N G+         S ++  ++  V++ GS
Sbjct: 66  KAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGS 125

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           F + +AA   +KK+  G    I + +S +G  G
Sbjct: 126 FQVTRAAWDHMKKQNYG---RIIMTASASGIYG 155

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 99.3 bits (247), Expect = 1e-26
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 11/147 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V ITGG+ G+G   A QA   GARV +     E+     + +    G        D
Sbjct: 4   SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHLD 59

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   +  +  +  A    G VD LV N G+     LE +S++  R ++++N+ G F  +K
Sbjct: 60  VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMK 119

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQV 178
             +P +K    G   SI  +SS AG +
Sbjct: 120 TVIPAMKDAGGG---SIVNISSAAGLM 143

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 99.3 bits (247), Expect = 2e-26
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           K   V ITGG+SG+G AL  +   EGA+V++L +S E+L E +       G  V     D
Sbjct: 4   KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH----GDNVLGIVGD 59

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQ-----SLDEVRLMIDVNIIGS 146
           VR  +  K A        G +D L+ N G++      V             +  +N+ G 
Sbjct: 60  VRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGY 119

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            H +KA LP +   +      +    S AG   
Sbjct: 120 IHAVKACLPALVASRGN----VIFTISNAGFYP 148

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 5e-26
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 38  RHV-FITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
            HV  +TGG+ GIGLA+     +     V + AR   + + A Q +Q A G+    +  D
Sbjct: 3   IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ-AEGLSPRFHQLD 61

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           + D  +++   D      G +DVLV N G+            +  + +  N  G+  +  
Sbjct: 62  IDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 121

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
             LPLIK +       +  +SS      
Sbjct: 122 ELLPLIKPQ-----GRVVNVSSIMSVRA 144

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (243), Expect = 9e-26
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQ----LATGIEVAT 91
           + +   +TGG++GIG A+  +  + G+ V I +R  E+L+ A   +Q          V  
Sbjct: 11  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 70

Query: 92  YSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
              ++R+ + V   +       G ++ LV N G       E  S      +++ N+ G+F
Sbjct: 71  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 130

Query: 148 HMIKAALPLIKKRQNG 163
           +M KA      K   G
Sbjct: 131 YMCKAVYSSWMKEHGG 146

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

 Score = 94.4 bits (234), Expect = 7e-25
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGAR-------VSILARSGEKLEEAKQSIQLATGIEVATY 92
           + ITG   GIG A+A + A+           + + +R+   LE+     + A G    T 
Sbjct: 4   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR-AEGALTDTI 62

Query: 93  SADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           +AD+ D   V+          G +D LV N GV   G L   + ++    ++ N+ G+F 
Sbjct: 63  TADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFF 122

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           + +A   L++++ +G    I  +++      
Sbjct: 123 LTQALFALMERQHSGHIFFITSVAATKAFRH 153

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 94.0 bits (233), Expect = 1e-24
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 5/128 (3%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG +SGIGL +A +  KEG RV + AR  E L    + ++   G+E    + DVR  
Sbjct: 5   ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR-EAGVEADGRTCDVRSV 63

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
             ++  +       GPVDVLV N G    G     + +    +++ N+ G F + K  L 
Sbjct: 64  PEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLK 123

Query: 156 LIKKRQNG 163
                + G
Sbjct: 124 AGGMLERG 131

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 2e-24
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 8/149 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           ++ + V +TG S GIG  +A+  AK GA V + ARS E L++                + 
Sbjct: 12  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 71

Query: 95  DVRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
            + D    +     A    G +D+L++N        L    +  VR  ++VN +    + 
Sbjct: 72  TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLT 131

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
            AALP++K+       SI ++SS AG+V 
Sbjct: 132 VAALPMLKQSN----GSIVVVSSLAGKVA 156

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 93.0 bits (230), Expect = 4e-24
 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYS 93
               V +TG + GIGL L  Q  K+     +   AR  EK  E K          V    
Sbjct: 2   SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK----DSRVHVLP 57

Query: 94  ADVRDFDAVKTALDEA------GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGS 146
             V    ++ T + +         + +L+ N GV +  G     +   +   +DVN    
Sbjct: 58  LTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117

Query: 147 FHMIKAALPLIKKRQNGGPASI 168
             + +  LPL+K   +      
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQ 139

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 92.9 bits (230), Expect = 4e-24
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 4/138 (2%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P+  +    TG   GIG  +A +  + GA V +   S  K  E   +     G +     
Sbjct: 3   PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQ 62

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
           AD+     V    D+A    G +D ++ N G+ V  +    + +    + ++N  G F +
Sbjct: 63  ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 122

Query: 150 IKAALPLIKKRQNGGPAS 167
            +  L   ++       S
Sbjct: 123 AQQGLKHCRRGGRIILTS 140

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (229), Expect = 6e-24
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + V +TGG  GIG  +       GARV I  +        +Q +  A  I       D
Sbjct: 5   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFIL-----CD 59

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMI 150
           V   D VKT + E     G +D +V N G   P +  E  S    R ++++N++G++ + 
Sbjct: 60  VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 119

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           K ALP ++K Q     ++  +SS  G +G
Sbjct: 120 KLALPYLRKSQ----GNVINISSLVGAIG 144

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 91.3 bits (226), Expect = 2e-23
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATYS 93
             + V ITG S+GIG + A   AKEGA+V+I  R+ ++LEE KQ I  A     ++    
Sbjct: 3   SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 62

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVN--QGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
           ADV +       ++      G +D+LV N    +        Q ++  +    +N     
Sbjct: 63  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 122

Query: 148 HMIKAA 153
            M +  
Sbjct: 123 EMTQKT 128

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 90.6 bits (224), Expect = 3e-23
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 9/153 (5%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT 91
           R  +K     +TGGS GIG A+  + A  GARV   +R+ ++L+E  +  +   G+ V  
Sbjct: 1   RWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR-EKGLNVEG 59

Query: 92  YSADVRDFDAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGS 146
              D+         +        G +++LV N GV +  E +  +  +  +++  N   +
Sbjct: 60  SVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAA 119

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
           +H+ +         +     ++  +SS AG   
Sbjct: 120 YHLSQ---IAYPLLKASQNGNVIFLSSIAGFSA 149

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 89.8 bits (222), Expect = 5e-23
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + + V ITG S+G+G ++A + A E A+V +  RS E    +        G E      D
Sbjct: 6   EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGD 65

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V     V   +  A    G +DV++ N G+  P      SL +   +ID N+ G+F   +
Sbjct: 66  VTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSR 125

Query: 152 AALPLIKKRQNGGP 165
            A+    +    G 
Sbjct: 126 EAIKYFVENDIKGT 139

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 89.3 bits (221), Expect = 8e-23
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 8/148 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           +++   +TG   GIG  +A   AK  + V  ++R+ +  +     I+ + G E + Y+ D
Sbjct: 9   ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK-SFGYESSGYAGD 67

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V   + +   +++       VD+LV N G+           DE   ++  N+   F++ +
Sbjct: 68  VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 127

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
                +   + G    I  +SS  G  G
Sbjct: 128 PISKRMINNRYG---RIINISSIVGLTG 152

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 89.5 bits (221), Expect = 8e-23
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG + GIG A A    +EGARV+I   + E        I    G      + D
Sbjct: 4   DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI----GPAACAIALD 59

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  ++   + E     G +D+LV N  +F    +   + +    +  +N+ G+  M++
Sbjct: 60  VTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQ 119

Query: 152 AALPLIKKRQNG 163
           A    +     G
Sbjct: 120 AVARAMIAGGRG 131

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 88.6 bits (219), Expect = 1e-22
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSADVRD 98
           V +TG S GIG A+A    K G +V +  ARS +  EE  + I+ A G +  T+  DV  
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE-AYGGQAITFGGDVSK 62

Query: 99  FDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
              V+  +  A    G +DV+V N G+     L      +   +ID+N+ G F   +AA 
Sbjct: 63  EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAAT 122

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
            ++ K++ G    I  ++S  G +G
Sbjct: 123 KIMMKKRKG---RIINIASVVGLIG 144

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 88.6 bits (219), Expect = 1e-22
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ITG  +GIG  +A   A  GA V +   + +        IQ   G +      D
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ-QLGGQAFACRCD 68

Query: 96  VRDFDAVK----TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           +     +      A+ + G VD+LV N G   P   ++  + + R   ++N+   FH+ +
Sbjct: 69  ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDM-PMADFRRAYELNVFSFFHLSQ 127

Query: 152 AALP 155
              P
Sbjct: 128 LVAP 131

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 2e-22
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + + +T  + GIG A A   A+EGA+V     +  KL+E      L     + T   D
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE------LEKYPGIQTRVLD 58

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           V     +    +E   +DVL    G    G +      +    +++N+   + MIKA LP
Sbjct: 59  VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLP 118

Query: 156 LIKKRQNGGPASIALMSSQAGQVG 179
            +  +++G    I  MSS A  V 
Sbjct: 119 KMLAQKSGN---IINMSSVASSVK 139

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 88.3 bits (218), Expect = 2e-22
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI-QLATGIEVATYSA 94
            DR V ITGG SG+G A A + A EGA++S++  S E LE +K ++ + A   EV T  A
Sbjct: 3   TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 62

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           DV D   V+  +       G +D    N G+                 +    +    + 
Sbjct: 63  DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLG 122

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
              +  I + Q  G       +S  G  G
Sbjct: 123 LEKVLKIMREQGSGMVVN--TASVGGIRG 149

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 87.9 bits (217), Expect = 3e-22
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +TG   GIG A+A +  K+G  V+I   +    +     I    G        DV D 
Sbjct: 4   ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN-QAGGHAVAVKVDVSDR 62

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           D V  A+++A    G  DV+V N GV     +E  + + V  + ++N+ G    I+AA+ 
Sbjct: 63  DQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVE 122

Query: 156 LIKKRQN 162
             KK  +
Sbjct: 123 AFKKEGH 129

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.0 bits (212), Expect = 2e-21
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSA 94
           K +   +TG +SGIGL +A   A +GA + +       ++E+ +  +    G++V    A
Sbjct: 3   KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           D+   +AV+  +D A    G +D+LV N G+     +E    ++   ++ +N+   FH  
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122

Query: 151 KAALPLIKKRQNG 163
            AALP +KK+  G
Sbjct: 123 AAALPHMKKQGFG 135

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 85.5 bits (211), Expect = 2e-21
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 12/118 (10%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
             +T      G+  A + ++ G  V+    S ++ +E +                     
Sbjct: 3   AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-------AFAETYPQLKPMSE 55

Query: 100 DAVKTALDEA----GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKA 152
                 ++      G VDVLV N         ++  ++++ R  ++   I  F ++ A
Sbjct: 56  QEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA 113

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 85.5 bits (211), Expect = 2e-21
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   ++GG+ G+G +       EGA+V       E+ +     +             D
Sbjct: 5   TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----ADAARYVHLD 60

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V      K A+D A    G + VLV N G+   G +E  +L E + ++DVN+ G F  I+
Sbjct: 61  VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIR 120

Query: 152 AALPLIKKRQN 162
           A +  +K+   
Sbjct: 121 AVVKPMKEAGR 131

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 84.7 bits (209), Expect = 3e-21
 Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 10/138 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           KD+ V ITG + GIG A     AKEGAR+         L EA      A  +       D
Sbjct: 4   KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA------AEAVGAHPVVMD 57

Query: 96  VRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  +V+    EA    G +D +V   G+          L++  L++ VN+ GSF + K
Sbjct: 58  VADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAK 117

Query: 152 AALPLIKKRQNGGPASIA 169
           AA   ++++  G     A
Sbjct: 118 AASEAMREKNPGSIVLTA 135

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 84.0 bits (207), Expect = 6e-21
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 12/143 (8%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           I+D+ V +   S GIG A+A   ++EGA V+I AR+ E L+ +                 
Sbjct: 2   IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRY----------VVC 51

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           D+R    +    ++   VD+LV+N G    G  +  + ++ +  ID   +    +++  L
Sbjct: 52  DLR--KDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYL 109

Query: 155 PLIKKRQNGGPASIALMSSQAGQ 177
           P +K++  G   +I   S  +  
Sbjct: 110 PAMKEKGWGRIVAITSFSVISPI 132

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 84.0 bits (207), Expect = 6e-21
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +   +TG S GIG A+A   A  GA+V   A S    +     +    G        +
Sbjct: 3   EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL----GANGKGLMLN 58

Query: 96  VRDFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  ++++       E G VD+LV N G+     L     +E   +I+ N+   F + K
Sbjct: 59  VTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSK 118

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
           A +  + K+++G    I  + S  G +G
Sbjct: 119 AVMRAMMKKRHG---RIITIGSVVGTMG 143

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 84.8 bits (209), Expect = 6e-21
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATGIEVATYSA 94
           + +   +TG   GIG  +A +  + G +V +  A S E  EE   +I+   G + A   A
Sbjct: 17  EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK-KNGSDAACVKA 75

Query: 95  DVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           +V   + +    +EA    G +D++  N GV   G ++  + +E   +  +N  G F + 
Sbjct: 76  NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVA 135

Query: 151 KAALPLIKKRQNG 163
           + A   ++     
Sbjct: 136 REAYKHLEIGGRL 148

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.7 bits (206), Expect = 1e-20
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAK---EGARVSILARSGEKLEEAKQSIQ-LATGIEVAT 91
                 +TG S G G ALA Q A+    G+ + + ARS   L + K+ +      ++V  
Sbjct: 5   GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64

Query: 92  YSADVRDFDAVKT--------ALDEAGPVDVLVVN---QGVFVPGELEVQSLDEVRLMID 140
            +AD+     V+            E     +L+ N    G    G L V  L EV     
Sbjct: 65  AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124

Query: 141 VNIIGSFHMIKAALPLIKKRQNG 163
           +N+     +    L   +     
Sbjct: 125 LNLTSMLCLTSGTLNAFQDSPGL 147

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 3e-20
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 6/148 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +  FITGG +G+G  +    +  GA+  I +R  + L+   + I   TG +V     D
Sbjct: 24  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 83

Query: 96  VRDFDAVKTA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           VRD D V+      +  AG  ++++ N         E  S +  + + D+ + G+  +  
Sbjct: 84  VRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTL 143

Query: 152 AALPLIKKRQNGGPASIALMSSQAGQVG 179
                + K Q G       +++   + G
Sbjct: 144 EIGKQLIKAQKGAAFLS--ITTIYAETG 169

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 81.4 bits (200), Expect = 9e-20
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 9/149 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             +   +TG    IGLA A + A+EG  +++L  + E LE+A+ S++   G+E  +Y  D
Sbjct: 4   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR-EKGVEARSYVCD 62

Query: 96  VRDFDAVK----TALDEAGPVDVLVVN-QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMI 150
           V   +AV     + + + G +D L  N         ++    D+   ++ +N+ G+FH++
Sbjct: 63  VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 122

Query: 151 KAALPLIKKRQNGGPASIALMSSQAGQVG 179
           KA    +  +  G    I   +S AG  G
Sbjct: 123 KAVSRQMITQNYG---RIVNTASMAGVKG 148

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 80.5 bits (198), Expect = 1e-19
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
             + + +TG +SGIG A     A+EGA +  + R    L EA  ++      E     AD
Sbjct: 4   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL----EAEAIAVVAD 59

Query: 96  VRDFDAVKT----ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
           V D  AV+     AL+E G +  +    GV          L+    ++ VN+ GSF + +
Sbjct: 60  VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVAR 119

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 38  RHVFITGGSSGIGLALAHQ---AAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
             + ITG + G+GL L        +    +    R+ E+ +E +          +     
Sbjct: 3   NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED--LAKNHSNIHILEI 60

Query: 95  DVRDFDAVK------TALDEAGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSF 147
           D+R+FDA          + +   ++VL  N G+      +      E+   +  N +   
Sbjct: 61  DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 120

Query: 148 HMIKAALPLIKKRQNGGPASI 168
            + KA LPL+KK      +  
Sbjct: 121 MLAKACLPLLKKAAKANESQP 141

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 79.5 bits (195), Expect = 3e-19
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 9/146 (6%)

Query: 37  DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADV 96
           +R   +TGG+SG+G A A      G RV +L    E  +       +    +V       
Sbjct: 1   ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDL------IYVEGDVTREEDVR 54

Query: 97  RDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
           R     +        V    V     + G+     L+  R +++VN++G+F++++ A   
Sbjct: 55  RAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWA 114

Query: 157 IKKRQ---NGGPASIALMSSQAGQVG 179
           +++      G    I   +S A   G
Sbjct: 115 MRENPPDAEGQRGVIVNTASVAAFEG 140

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-18
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 10/147 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-----TGIEVATYSA 94
           V ITG SSGIGL LA + A + ++   +  +   L+   +  + A         + T   
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 95  DVRDFDAVKTA--LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKA 152
           DVRD  +V  A      G VDVLV N G+ + G LE    D V  ++DVN++G+  M++A
Sbjct: 65  DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124

Query: 153 ALPLIKKRQNGGPASIALMSSQAGQVG 179
            LP +K+R +G         S  G +G
Sbjct: 125 FLPDMKRRGSGRVLVT---GSVGGLMG 148

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 76.7 bits (188), Expect = 3e-18
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 19/150 (12%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS 93
           P   R V +TGG+ GIGLA+A + A +G +V++  R     +             +    
Sbjct: 4   PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK------------GLFGVE 51

Query: 94  ADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            DV D DAV  A        GPV+VLV N G+     L   + ++   +I+ N+ G+F +
Sbjct: 52  VDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRV 111

Query: 150 IKAALPLIKKRQNGGPASIALMSSQAGQVG 179
            + A   +++ + G    +  + S +G  G
Sbjct: 112 AQRASRSMQRNKFG---RMIFIGSVSGLWG 138

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.8 bits (175), Expect = 2e-16
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 11/141 (7%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V + GG   +G A+     K G  V  +  S     ++   +             +    
Sbjct: 5   VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGN----KNWTEQEQSIL 60

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQ-SLDEVRLMIDVNIIGSFHMIKAALPLIK 158
           +   ++L +   VD +    G +  G    +  +    LMI  ++  S    K     + 
Sbjct: 61  EQTASSL-QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAK-----LA 114

Query: 159 KRQNGGPASIALMSSQAGQVG 179
                    + L  + A    
Sbjct: 115 TTHLKPGGLLQLTGAAAAMGP 135

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.0 bits (173), Expect = 4e-16
 Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 11/145 (7%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + R V + GG   +G             V+ +     +   A   +++            
Sbjct: 1   EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFT-----EQ 55

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGE-LEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
                A    L     VD ++   G +  G            LM   +I  S      A 
Sbjct: 56  ADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLA- 114

Query: 155 PLIKKRQNGGPASIALMSSQAGQVG 179
                +       + L  ++A   G
Sbjct: 115 ----TKHLKEGGLLTLAGAKAALDG 135

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 1e-15
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
           +K     ITGG+SG+GLA A +   +GA   +L       E   + +        A  ++
Sbjct: 3   VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 62

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPG------ELEVQSLDEVRLMIDVNIIGSFH 148
           +     A+  A  + G VDV V   G+ V        + +  +L++ + ++DVN++G+F+
Sbjct: 63  EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN 122

Query: 149 MIKAALPLIKKRQNG---GPASIALMSSQAGQVG 179
           +I+     + + +         I   +S A   G
Sbjct: 123 VIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 156

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 69.5 bits (169), Expect = 2e-15
 Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 20/143 (13%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKL-EEAKQSIQLATGIEVATYSADVRD 98
             ITGG+  IG ++A +  ++G RV +  R  E   +     +  A          D+  
Sbjct: 4   AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL 63

Query: 99  F--------DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDV--------- 141
                    D +  +    G  DVLV N   + P  L                       
Sbjct: 64  SSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELF 123

Query: 142 --NIIGSFHMIKAALPLIKKRQN 162
             N +    +I+A      +   
Sbjct: 124 GSNAVAPLFLIRAFARRQGEGGA 146

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 68.8 bits (167), Expect = 3e-15
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + I+G ++GIG A        G ++  +     ++                   AD+   
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI------------------ADLSTA 45

Query: 100 DAVKTALDEA-----GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL 154
           +  K A+ +        +D LV+  G+    ++       +  ++ VN  G+  ++ A L
Sbjct: 46  EGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV-------LGNVVSVNYFGATELMDAFL 98

Query: 155 PLIKKRQNGG 164
           P +KK     
Sbjct: 99  PALKKGHQPA 108

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

 Score = 69.3 bits (168), Expect = 4e-15
 Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 36/147 (24%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQLATG------------ 86
             +TG +  +G ++A     EG  V +   RS  +      ++                 
Sbjct: 5   ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 64

Query: 87  -----IEVATYSADVRDFDAVKTALDEA----GPVDVLVVNQGVFVPGELEVQSLDEVRL 137
                +  A  SA V  F      +       G  DVLV N   F P  L     D    
Sbjct: 65  VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 124

Query: 138 --------------MIDVNIIGSFHMI 150
                         +   N I  + +I
Sbjct: 125 CVGDREAMETATADLFGSNAIAPYFLI 151

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 68.3 bits (166), Expect = 5e-15
 Identities = 22/155 (14%), Positives = 56/155 (36%), Gaps = 13/155 (8%)

Query: 33  IPIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA 90
           + +  +   + G ++   +G A+A +  + GA V++  ++     EA++  +   G  + 
Sbjct: 4   VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLF 63

Query: 91  TYSADVRDF--DAVKTALDEAGPVDVLV----VNQGVFVPGELEVQSLDEVRLMIDVNII 144
                  +          +  G +D LV          + G        +  L ++V+  
Sbjct: 64  RADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAY 123

Query: 145 GSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
               + + A PL+++        I  ++  A +  
Sbjct: 124 SLVAVARRAEPLLREG-----GGIVTLTYYASEKV 153

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 60.3 bits (145), Expect = 5e-12
 Identities = 18/153 (11%), Positives = 49/153 (32%), Gaps = 14/153 (9%)

Query: 36  KDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQL--ATGIEVAT 91
             + + +TG +S   I   +A    +EGA ++   ++ +     ++      +  +    
Sbjct: 4   SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCD 63

Query: 92  YSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELE-----VQSLDEVRLMIDVNIIGS 146
            + D                 D  V + G     +L+       + +  ++  D++    
Sbjct: 64  VAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSF 123

Query: 147 FHMIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
             M KA   ++         ++  +S    +  
Sbjct: 124 VAMAKACRSMLNPGS-----ALLTLSYLGAERA 151

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 36  KDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEV--AT 91
           K +   I G ++   I   +A     +GA ++    +    +  +   Q      V    
Sbjct: 4   KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELD 63

Query: 92  YSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
            S +        +   + G +D +V +        LE   L+  +   +  +  S + + 
Sbjct: 64  VSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLI 123

Query: 152 AALPLIKKRQNGGPASI 168
                +K   N G + +
Sbjct: 124 ELTNTLKPLLNNGASVL 140

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 56.2 bits (134), Expect = 1e-10
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 37 DRHVFITGGSSGIGLALAHQAAKEGARVSIL-ARSGEKLEEAKQSIQ 82
             V +TGG+ G+G  +A   A+ GA   +L +RSG   + A + + 
Sbjct: 9  TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVA 55

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 36 KDRHVFITG--GSSGIGLALAHQAAKEGARVSILARSGEKLEEA 77
            + + ++G    S I   +A  A ++GA++ +      +L + 
Sbjct: 5  DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQR 48

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 54.1 bits (129), Expect = 4e-10
 Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 11/151 (7%)

Query: 29  KPVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIE 88
           K     +K +   +  G+  +G+  A   A EGA V +  R  +K +    +  +    +
Sbjct: 15  KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA--AADSVNKRFK 72

Query: 89  VATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFH 148
           V   +A+  D  +   A+        +     + +    E+      +    + I+  ++
Sbjct: 73  VNVTAAETADDASRAEAV---KGAHFVFTAGAIGL----ELLPQAAWQNESSIEIVADYN 125

Query: 149 MIKAALPLIKKRQNGGPASIALMSSQAGQVG 179
                        + G           G +G
Sbjct: 126 AQPPLGIGGIDATDKG--KEYGGKRAFGALG 154

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.4 bits (124), Expect = 2e-09
 Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 3/143 (2%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATG---IEVATYSADV 96
           V + GG+  +G  LA + A  G  + + +R  EK E      +   G   I         
Sbjct: 3   VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAA 62

Query: 97  RDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPL 156
              D     +     +D     + +     +    +   R              +    +
Sbjct: 63  EACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEV 122

Query: 157 IKKRQNGGPASIALMSSQAGQVG 179
           ++  +          +  A    
Sbjct: 123 LESEKVVSALHTIPAARFANLDE 145

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILAR-----SGEKLEEAKQSIQLATGIEVATYSA 94
             ITG +   G  LA    ++G  V  + R     + E+++   Q        +   +  
Sbjct: 4   ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT-CNPKFHLHYG 62

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D+ D   +   L E  P +V  +     V       S +      DV+ +G+  +++A 
Sbjct: 63  DLSDTSNLTRILREVQPDEVYNLGAMSHVA-----VSFESPEYTADVDAMGTLRLLEAI 116

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 51.4 bits (121), Expect = 8e-09
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 35  IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSA 94
            + + VF+TG +   G  L+      GA V   + +   +    ++ ++A G++      
Sbjct: 6   WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQS--EIG 63

Query: 95  DVRDFDAV 102
           D+RD + +
Sbjct: 64  DIRDQNKL 71

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 50.9 bits (120), Expect = 1e-08
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRD 98
           + ITGG   +G  LA  A  +G  + +    S +   +    +      E      D+R+
Sbjct: 3   LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEF--VHGDIRN 60

Query: 99  FDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIK 158
            + V   + +  P     +   V +       S+D   +  ++N+ G+ ++++A      
Sbjct: 61  KNDVTRLITKYMPDSCFHLAGQVAMT-----TSIDNPCMDFEINVGGTLNLLEAVRQYNS 115

Query: 159 KR 160
             
Sbjct: 116 NC 117

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 2/72 (2%)

Query: 33  IPIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA 90
           I ++ +  FI G +   G G A+A   A  GA + +               +        
Sbjct: 4   IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRV 63

Query: 91  TYSADVRDFDAV 102
                + +   V
Sbjct: 64  LPDGSLMEIKKV 75

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + +++ +TGG+  IG    H        V +           K +++   G  V     D
Sbjct: 1   QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGD 60

Query: 96  VRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP 155
           + D + V     +A  +                  SL++    I  N IG++ +++AA  
Sbjct: 61  IADAELVDKLAAKADAIVHYAAESHND-------NSLNDPSPFIHTNFIGTYTLLEAARK 113

Query: 156 LIKKRQN 162
              +  +
Sbjct: 114 YDIRFHH 120

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 47.1 bits (110), Expect = 2e-07
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 33  IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVAT- 91
           +P +   V +TG +  +   +  Q  + G +V   ARS  KL   ++           T 
Sbjct: 8   LP-EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETA 66

Query: 92  YSADVRDFDAVK 103
              D+    A  
Sbjct: 67  VVEDMLKQGAYD 78

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + ITGG+  IG A+     K      +           +    ++         AD+ D 
Sbjct: 3   ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDS 62

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
             +    ++  P  V+ +     V      +S+      I+ NI+G++ +++ A
Sbjct: 63  AEITRIFEQYQPDAVMHLAAESHVD-----RSITGPAAFIETNIVGTYALLEVA 111

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILAR-----SGEKLEEAKQSIQLATGIEVATYSA 94
             ITG +   G  LA    ++G  V  + R     +  ++E   ++ Q      +  +  
Sbjct: 4   ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63

Query: 95  DVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
           D+ D   +   ++E  P ++  +     V       S D      DV+ +G+  ++ A 
Sbjct: 64  DLTDSTCLVKIINEVKPTEIYNLGAQSHVK-----ISFDLAEYTADVDGVGTLRLLDAV 117

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TGGS  IG     Q  + G  V IL             I+   G        D+R+ 
Sbjct: 3   VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
             +   L +    D ++   G+   GE    S+ +     D N+ G+  +I 
Sbjct: 63  ALMTEILHDHAI-DTVIHFAGLKAVGE----SVQKPLEYYDNNVNGTLRLIS 109

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           V +TGG+  IG     +  + G    +         ++   +++ T   +  Y  D+ D 
Sbjct: 4   VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 63

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA 153
             ++    E     V+       V    ++            NI+G+  +++  
Sbjct: 64  KGLEKVFKEYKIDSVIHFAGLKAVGESTQIP-----LRYYHNNILGTVVLLELM 112

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 43.4 bits (100), Expect = 5e-06
 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 37 DRHVFITG--GSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVA 90
          +   FI G   ++G G  +A + +K   ++             K         ++ 
Sbjct: 2  EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMI 57

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 42.6 bits (98), Expect = 8e-06
 Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 20/112 (17%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + + G +  +G  L    A  G  +++   S E                   +  D  + 
Sbjct: 3   ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE-------------------FCGDFSNP 43

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK 151
             V   + +  P DV+V         + E +      L        +    +
Sbjct: 44  KGVAETVRKLRP-DVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANE 94

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 9e-06
 Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 14/120 (11%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + ITGG+  +G  L  +   +G  V+++       +   +         +   + ++ + 
Sbjct: 4   ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW-------IGHENFELINH 56

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK 159
           D V+    E   +  L                +      +  N IG+ +M+  A  +  +
Sbjct: 57  DVVEPLYIEVDQIYHLASPASP-------PNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 109

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL------ARSGEKLEEAKQSIQLATGIEVATYS 93
           V +TGG+  IG     +  + G    ++       R G  L E+ + +Q  TG  V    
Sbjct: 5   VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64

Query: 94  ADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHM 149
            D+ D  A++    +   + V+       V      +S+ +      VN+ G+  +
Sbjct: 65  MDILDQGALQRLFKKYSFMAVIHFAGLKAVG-----ESVQKPLDYYRVNLTGTIQL 115

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILAR-----SGEKLEEAKQSIQLATGIEVATYSA 94
             ITG +   G  L      +G  V  L R     + +++              +  + A
Sbjct: 4   ALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYA 63

Query: 95  DVRDFDAVKTALD 107
           D+ D  +++  +D
Sbjct: 64  DLTDASSLRRWID 76

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 40 VFITGGSSGIGLALAHQAAKEGARVSILA--RSGEKLEEAKQSIQLATG 86
          V +TG S   G  +  +  +   +       RS +  E+      +  G
Sbjct: 6  VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIG 54

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.5 bits (95), Expect = 2e-05
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 16/84 (19%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSIL----------------ARSGEKLEEAKQSIQL 83
           V + GG    G A A   +K+   V I+                      + +     + 
Sbjct: 4   VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63

Query: 84  ATGIEVATYSADVRDFDAVKTALD 107
            TG  +  Y  D+ DF+ +  +  
Sbjct: 64  LTGKSIELYVGDICDFEFLAESFK 87

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 36  KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSAD 95
           + + + + G +   G +L   AA  G  V     S + L    + +Q    + +      
Sbjct: 2   QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL--IAEELQAIPNVTLFQ--GP 57

Query: 96  VRDFDAVKTALDEAGPVDVLV 116
           + +   +   L E   +  + 
Sbjct: 58  LLNNVPLMDTLFEGAHLAFIN 78

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKL 74
          + I G +   GL    QA + G  V++L R   +L
Sbjct: 6  IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL 40

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 32  RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR----SGEKLEEAKQSIQLATGI 87
            +P + +   ITG +  IG  L     K   +V  L          L+E +  +      
Sbjct: 11  ELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS 70

Query: 88  EVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSF 147
                  D+R+ D    A      V        V        +S+++       NI G  
Sbjct: 71  NFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVP-------RSINDPITSNATNIDGFL 123

Query: 148 HMIKAA 153
           +M+ AA
Sbjct: 124 NMLIAA 129

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 20/121 (16%), Positives = 33/121 (27%), Gaps = 25/121 (20%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           VFI G    +G A+  Q  + G    +L    E                      ++ D 
Sbjct: 5   VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE---------------------LNLLDS 43

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK 159
            AV           V +    V         +       I  N++   ++I AA      
Sbjct: 44  RAVHDFFASERIDQVYLAAAKVGGIVA----NNTYPADFIYQNMMIESNIIHAAHQNDVN 99

Query: 160 R 160
           +
Sbjct: 100 K 100

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 22/85 (25%)

Query: 40  VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF 99
           + ITG +  +G  +  Q   +   V                              D+ + 
Sbjct: 4   ILITGANGQLGREIQKQLKGKNVEVIPTDVQ----------------------DLDITNV 41

Query: 100 DAVKTALDEAGPVDVLVVNQGVFVP 124
            AV    +E  P  V+       V 
Sbjct: 42  LAVNKFFNEKKPNVVINCAAHTAVD 66

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE 76
          + V + G +   G  L  +   E     ++A + + L E
Sbjct: 3  KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE 41

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK-QSIQLATGIEVATYSA 94
          K   V I GG+  IG  + + +   G    +L R        K Q +     +      A
Sbjct: 2  KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 61

Query: 95 DVRDF 99
           + D 
Sbjct: 62 SLDDH 66

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 40 VFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA 84
          + + G +  IG  +A  +   G    +L R       ++++  L 
Sbjct: 6  ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLE 50

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 38  RHVFITGGSSGIGLALAHQAAKEGARVSILAR--SGEKLEEAKQSIQLATGIEVATYSAD 95
           R   +TG +   G  LA    ++G RV  L    S +     +   +L    ++     D
Sbjct: 1   RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR---ELGIEGDIQYEDGD 57

Query: 96  VRDFDAV 102
           + D  +V
Sbjct: 58  MADACSV 64

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 34  PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATY 92
           P ++  + ITG    I   +A +   EG  V        E + E     +         +
Sbjct: 12  PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEF--------H 63

Query: 93  SADVRDFDAVKTALD 107
             D+R  +      +
Sbjct: 64  LVDLRVMENCLKVTE 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	100.0
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	100.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	100.0
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	100.0
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	100.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	100.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	100.0
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	100.0
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	100.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	100.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	100.0
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.98
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.98
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.98
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.98
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.98
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.98
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.97
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.97
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.97
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.97
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.97
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.97
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.97
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.97
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.97
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.97
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.97
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.97
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.97
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.97
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.97
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.97
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.96
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.96
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.96
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.96
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.96
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.96
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.96
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.96
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.95
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.95
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.95
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.95
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.95
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.95
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.95
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.95
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.94
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.94
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.93
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.91
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.89
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.88
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.88
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.88
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.86
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.85
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.82
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.78
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.78
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.78
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.78
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.77
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.66
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.63
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.63
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.6
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.55
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.54
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.53
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.53
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.53
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.52
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.51
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.48
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.47
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.42
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.39
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.35
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.34
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.31
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.3
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.3
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.27
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.18
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.17
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.17
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.09
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.08
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	98.89
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.88
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.84
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.81
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.57
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.48
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.46
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.39
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.38
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.37
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.33
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.3
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.25
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.17
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.16
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.16
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	98.16
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.14
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.13
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.13
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.13
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.03
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.92
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.9
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.9
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.78
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.77
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.77
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.74
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.72
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.7
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.7
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.61
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.61
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.56
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.55
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.52
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.5
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.5
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.49
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.43
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.41
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.4
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.39
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.38
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.37
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.36
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.35
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.33
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.33
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.31
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.3
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.17
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.13
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.12
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.12
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.11
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.1
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.08
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.08
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.02
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.01
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.01
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.94
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.93
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.91
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.88
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.81
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.79
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.75
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.73
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.73
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.72
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.71
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.64
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.63
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.6
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.58
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.57
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.55
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.53
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.48
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.46
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.46
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.43
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.37
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.35
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.3
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.27
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.26
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.23
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.17
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.13
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.12
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.11
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.06
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.05
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.02
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.95
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.95
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.93
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.9
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.87
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.86
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.84
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.83
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.82
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.8
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.77
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.75
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.75
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.73
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.72
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.72
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.69
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.66
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.64
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.6
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.6
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.56
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.55
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.51
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.46
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.44
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.43
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.4
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.38
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	95.31
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	95.22
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.21
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.13
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	95.08
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.03
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.02
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	94.92
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.9
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.89
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.77
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.65
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	94.62
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.59
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.59
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.43
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.29
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	94.28
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.23
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.23
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.21
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.14
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.13
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.88
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.78
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	93.54
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	93.51
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.5
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.44
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.44
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.42
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.38
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.17
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.17
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.16
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.04
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	92.95
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.93
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	92.87
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	92.8
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	92.79
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.78
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	92.64
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	92.63
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	92.5
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	92.41
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.37
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.21
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.19
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.12
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.02
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	92.0
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.78
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.75
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.4
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	91.3
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	91.3
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.25
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.2
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.18
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	91.09
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	91.03
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.02
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	91.01
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.93
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	90.93
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.85
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	90.78
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	90.73
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.49
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	90.49
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.47
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.41
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.28
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.19
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.06
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.95
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.83
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.72
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	89.63
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	89.46
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.28
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	89.14
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.12
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.94
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	88.58
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	88.54
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.53
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	88.5
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	88.48
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.44
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	88.43
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.39
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.29
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.19
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.1
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.96
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	87.8
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	87.73
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.65
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	87.53
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.37
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	87.35
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	87.3
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.24
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	87.18
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	87.1
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.06
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	86.94
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	86.92
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	86.84
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.66
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	86.54
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	86.27
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.24
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.15
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	86.09
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	85.89
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	85.67
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.37
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.3
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.24
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.06
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	84.59
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	84.54
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	84.45
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	84.34
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	84.28
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	84.1
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.04
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	83.78
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	83.75
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	83.72
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.62
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	83.55
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.14
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	83.12
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	83.11
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.9
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.6
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.5
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	82.38
d1qh8b_	519	Nitrogenase iron-molybdenum protein, beta chain {K	82.09
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	82.07
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	81.88
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	81.8
d2h00a1	250	Methyltransferase 10 domain containing protein MET	81.71
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	81.38
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	81.25
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	80.61
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	80.15
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	80.12
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	80.07
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	80.05

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.7e-33  Score=206.58  Aligned_cols=141  Identities=30%  Similarity=0.507  Sum_probs=130.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++||+++||||++|||+++|++|+++|++|++++|+++++++..+++....+.++..+.+|+++++++++++++    +
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            579999999999999999999999999999999999999999988888777788899999999999998887654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      |++|+||||||.....++.+.+.|+|++.+++|+.++++++|.++|.|++++.|   +||+++|..+.
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G---~Ii~i~S~~~~  146 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNP---SIINIGSLTVE  146 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSC---EEEEECCGGGT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccc---cccccccchhc
Confidence            899999999999888999999999999999999999999999999999887765   99999997653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=9e-33  Score=206.94  Aligned_cols=142  Identities=29%  Similarity=0.449  Sum_probs=129.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++||++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++....+.++..+.+|++|++++++++++    +
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999997 45677787777777788899999999999999887654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|+||||||.....++++.++++|++++++|+.++++++|.++|+|++++.|   +||++||.++..|
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G---~Iv~isS~~~~~~  148 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG---RIINIASAHGLVA  148 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTSC
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCc---eEeecccccceec
Confidence            899999999999999999999999999999999999999999999999988755   9999999988764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-32  Score=201.77  Aligned_cols=143  Identities=28%  Similarity=0.406  Sum_probs=130.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----h
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----E  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~  108 (179)
                      .+++||+++||||++|||+++|++|+++|++|++++|++++++++.+++.. .+.++..+.+|++|.++++++++    +
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG-LGAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999998864 47789999999999999888765    4


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++++|++|||||.....++.+.+.++|++++++|+.|++++++.++|.|++++.|   +||++||.+|..|
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G---~Iv~isS~~~~~~  149 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG---HIVTVASAAGHVS  149 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE---EEEEECCCC-CCC
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCc---eEEEeecchhcCC
Confidence            6899999999999998899999999999999999999999999999999987654   9999999998764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.2e-32  Score=203.83  Aligned_cols=145  Identities=22%  Similarity=0.295  Sum_probs=131.8

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ..+.++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.. .+.++..+.+|++|++++++++++  
T Consensus         4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~-~g~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-FGYESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999888864 467889999999999999887754  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        +|++|++|||||.....++.+.+.++|++.+++|+.++++++|+++|.|++++.|   +||++||.+|..|
T Consensus        83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G---~IVnisS~~~~~~  152 (251)
T d2c07a1          83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG---RIINISSIVGLTG  152 (251)
T ss_dssp             HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE---EEEEECCTHHHHC
T ss_pred             HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCe---EEEEECCHHhcCC
Confidence              5899999999999988899999999999999999999999999999999988755   9999999987653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=100.00  E-value=6.2e-32  Score=202.20  Aligned_cols=144  Identities=22%  Similarity=0.425  Sum_probs=130.6

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      +++++||++|||||++|||+++|++|+++|++|++++|+++++++..+++.. .+.++..+.+|++|++++++++++   
T Consensus         3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS-KGFKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999999888865 367788899999999999887654   


Q ss_pred             -hC-CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AG-PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~-~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++ ++|++|||||.....++.+.+.|+|++++++|+.++++++|.++|.|++++.|   +||++||.++..+
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G---~Ii~isS~~~~~~  151 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG---NVVFISSVSGALA  151 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE---EEEEECCGGGTSC
T ss_pred             HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccc---ccccccccccccc
Confidence             44 79999999999988899999999999999999999999999999999988765   9999999988653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=100.00  E-value=5.4e-32  Score=202.37  Aligned_cols=142  Identities=31%  Similarity=0.424  Sum_probs=127.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      ++||+++||||++|||+++|++|+++|++|++++|+++.+++..+++... .+.++..+.+|++|++++++++++    +
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999998888887654 356788999999999998877654    6


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|+||||||... ..++++.++++|++++++|+.++++++|++.|.|++++.|   +||++||.++..|
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G---~Ii~isS~~~~~~  149 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG---MVVNTASVGGIRG  149 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCGGGTSB
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCC---CCcccccHhhccC
Confidence            89999999999765 4578889999999999999999999999999999988765   9999999988653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-32  Score=203.25  Aligned_cols=139  Identities=27%  Similarity=0.371  Sum_probs=125.9

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++||+++||||++|||+++|++|+++|++|++++|+++.+++..+++.    .+...+.+|+++++++++++++    +
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG----ANGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence            4789999999999999999999999999999999999998888877763    4577889999999998777654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|++|||||.....++.+.+.++|++.+++|+.++++++|+++|+|++++.|   +||++||.++..|
T Consensus        77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G---~II~isS~~~~~~  143 (243)
T d1q7ba_          77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHG---RIITIGSVVGTMG  143 (243)
T ss_dssp             CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHHC
T ss_pred             CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCC---EeeeecchhhcCC
Confidence            899999999999999999999999999999999999999999999999987755   9999999987653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.5e-32  Score=200.71  Aligned_cols=139  Identities=28%  Similarity=0.383  Sum_probs=126.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++||+++||||++|||+++|++|+++|++|++++|+++++++..+++.    .++..+.+|++|++++++++++    +
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999999999998888777663    4577889999999998877654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|++|||||.....++.+.++++|++++++|+.++++++|.+.|.|++++.|   +||++||.++..|
T Consensus        79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G---~Ii~isS~~~~~~  145 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG---SIINISSIEGLAG  145 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTSC
T ss_pred             CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcc---eEEeccccccccc
Confidence            899999999999988899999999999999999999999999999999988755   9999999988754

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.5e-32  Score=202.45  Aligned_cols=145  Identities=28%  Similarity=0.395  Sum_probs=121.1

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      .+++++||++|||||++|||+++|++|+++|++|++++|+++++++..+++... +.++..+.+|+++++++++++++  
T Consensus         2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d1xq1a_           2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK-GFQVTGSVCDASLRPEREKLMQTVS   80 (259)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEeccCCCHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999998888654 56789999999999998887654  


Q ss_pred             --h-CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 --A-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 --~-~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        + +++|++|||||...+.++.+.+.++|++.+++|+.++++++|.+.|.|++++.|   +||++||.++..|
T Consensus        81 ~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G---~Iv~isS~~~~~~  151 (259)
T d1xq1a_          81 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG---NIIFMSSIAGVVS  151 (259)
T ss_dssp             HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---EEEEEC-------
T ss_pred             HHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccc---ccccccccccccc
Confidence              4 689999999999998999999999999999999999999999999999988765   9999999988653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.1e-32  Score=201.80  Aligned_cols=143  Identities=24%  Similarity=0.339  Sum_probs=128.9

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++++||+++||||++|||+++|++|+++|++|++++|++++++++.+++... +.++..+.+|+++++++++++++   
T Consensus         6 ~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~-g~~~~~~~~Dvs~~~~~~~~~~~~~~   84 (255)
T d1fmca_           6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-GGQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999888753 67888999999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       ++++|++|||||...+.++ +.++++|++++++|+.++++++|.++|.|.+++.+   +||++||.++..|
T Consensus        85 ~~g~iDilvnnAG~~~~~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g---~Ii~isS~~~~~~  152 (255)
T d1fmca_          85 KLGKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG---VILTITSMAAENK  152 (255)
T ss_dssp             HHSSCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTCC
T ss_pred             HcCCCCEeeeCCcCCCCCcc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccccc---ccccccccchhcc
Confidence             6899999999998877766 68999999999999999999999999999988754   9999999988654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=100.00  E-value=5.6e-32  Score=201.75  Aligned_cols=139  Identities=31%  Similarity=0.429  Sum_probs=126.4

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++||++|||||++|||+++|++|+++|++|++++|+++++++..+++    +.++..+.+|+++++++++++++    +
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            479999999999999999999999999999999999998887776655    45688999999999999887654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|+||||||.....++.+.++|+|++.+++|+.++++++|.++|.|++++.|   +||++||.++..+
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G---~II~isS~~~~~~  144 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG---SIVNISSAAGLMG  144 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTSC
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCC---eecccccchhccc
Confidence            899999999999998999999999999999999999999999999999988755   9999999988654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=7.6e-32  Score=200.85  Aligned_cols=142  Identities=35%  Similarity=0.471  Sum_probs=128.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++||++|||||++|||+++|++|+++|++|++++|+++.+++..+++..  +.++..+.+|++|++++++++++    +
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            37999999999999999999999999999999999999998888887743  45788899999999998877654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|+||||||.....++.+.++++|++++++|+.++++++|.++|.|++++.|  ++||++||.+|..|
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~g--g~Ii~isS~~~~~~  148 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLG--ASIINMSSIEGFVG  148 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSC--EEEEEECCGGGTSC
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCC--CceEeeeccceecc
Confidence            899999999999999999999999999999999999999999999999876542  58999999988754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.98  E-value=1.3e-31  Score=199.19  Aligned_cols=139  Identities=29%  Similarity=0.379  Sum_probs=122.5

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ++||+++||||++|||+++|++|+++|++|++++|++++.  ..+.+ ...+.++..+.+|++|++++++++++    +|
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~-~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAI-RNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHH-HHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHH-HHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999999999999987532  22222 33467889999999999999887654    68


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|+||||||.....++.+.++|+|++++++|+.++++++|+++|.|++++.|   +||++||.++..|
T Consensus        80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G---~Iv~isS~~~~~~  145 (247)
T d2ew8a1          80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG---RIINLTSTTYWLK  145 (247)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGGSC
T ss_pred             CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCC---Cccccccchhccc
Confidence            99999999999998999999999999999999999999999999999988755   9999999988754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.98  E-value=9.3e-32  Score=201.35  Aligned_cols=142  Identities=30%  Similarity=0.464  Sum_probs=128.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|+++.+++..+++.. .+.++..+.+|+++++++++++++    +
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE-KGVEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-TTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36899999999999999999999999999999999999999998888864 467889999999999998877654    6


Q ss_pred             CCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|++|||||.... .++.+.+.++|++.+++|+.++++++|+++|.|.+++.|   +||++||.++..|
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G---~II~isS~~~~~~  148 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYG---RIVNTASMAGVKG  148 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHSC
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCC---CCCeeechhhccC
Confidence            899999999998754 679999999999999999999999999999999988765   9999999987654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.98  E-value=1.8e-31  Score=199.83  Aligned_cols=144  Identities=26%  Similarity=0.328  Sum_probs=127.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.+ .+++..+++.. .+.++..+.+|++|++++++++++   
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~-~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK-VGGEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999854 56667776654 467889999999999998877654   


Q ss_pred             -hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 -AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       +|++|+||||||...+.++.+.+.++|++.+++|+.++++++|.++|.|++++.+  ..|+++||.++..|
T Consensus        82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g--~~Iv~isS~~~~~~  151 (261)
T d1geea_          82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIK--GTVINMSSVHEKIP  151 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC--CEEEEECCGGGTSC
T ss_pred             HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccc--ccccccccchhccc
Confidence             6899999999999988999999999999999999999999999999999887643  37999999988654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.98  E-value=1.7e-31  Score=199.46  Aligned_cols=140  Identities=27%  Similarity=0.402  Sum_probs=125.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++||+++||||++|||+++|++|+++|++|++++|+++++++..+++    +.++..+.+|+++++++++++++    +
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI----GPAACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999999888877765    56788899999999999887654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|+||||||.....++.+.+.|+|++.+++|+.|+++++|+++|.|.++++  .++||++||.++..|
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~--~g~Iv~isS~~~~~~  145 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGR--GGKIINMASQAGRRG  145 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGTSC
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhcc--CCccccccchhhccc
Confidence            89999999999998899999999999999999999999999999998776543  249999999988754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.5e-31  Score=198.44  Aligned_cols=142  Identities=25%  Similarity=0.361  Sum_probs=127.0

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      |.+.++||++|||||++|||+++|++|+++|++|++++|+++++++..+++.     .+..+.+|++|++++++++++++
T Consensus         1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~g   75 (244)
T d1pr9a_           1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----GIEPVCVDLGDWEATERALGSVG   75 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHHHHhC
Confidence            3456899999999999999999999999999999999999998887776653     35678899999999999999999


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|+||||||.....++.+.++|+|++.+++|+.++++++|.++|.|.+++.  .++|+++||.++..+
T Consensus        76 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~--~g~Ii~isS~~~~~~  142 (244)
T d1pr9a_          76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV--PGAIVNVSSQCSQRA  142 (244)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGTSC
T ss_pred             CceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCC--cceEeeccccccccc
Confidence            9999999999998899999999999999999999999999999998765432  249999999988653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.98  E-value=2.1e-31  Score=199.08  Aligned_cols=140  Identities=30%  Similarity=0.433  Sum_probs=125.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~  111 (179)
                      .||++|||||++|||+++|++|+++|++|++++|+++.+++..+++.. .+.++..+.+|++|++++++++++    +++
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE-AGVEADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            389999999999999999999999999999999999999999988864 467899999999999998877654    689


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHH--HhccCCCCcEEEEecccCcccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI--KKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +|+||||||.....++.+.++|+|++++++|+.++++++|+++|+|  .+++.   ++|+++||.++..|
T Consensus        80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~---g~Ii~i~S~~~~~~  146 (257)
T d2rhca1          80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT---GRIVNIASTGGKQG  146 (257)
T ss_dssp             CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTE---EEEEEECCGGGTSC
T ss_pred             CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCC---cccccccccccccc
Confidence            9999999999988999999999999999999999999999999974  44443   49999999988764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-31  Score=196.72  Aligned_cols=140  Identities=24%  Similarity=0.345  Sum_probs=125.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++++||++|||||++|||+++|++|+++|++|++++|+++++++..+++.     .+..+.+|++|+++++++++++|++
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~g~i   75 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP-----GIEPVCVDLGDWDATEKALGGIGPV   75 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHHHHcCCC
Confidence            35799999999999999999999999999999999999988877766552     3567889999999999999999999


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |+||||||.....++.+.++++|++.+++|+.++++++|.+.|.|.+++.  .++||++||.++..+
T Consensus        76 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~--~g~ii~isS~~~~~~  140 (242)
T d1cyda_          76 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV--PGSIVNVSSMVAHVT  140 (242)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGTSC
T ss_pred             eEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcc--cCcccccchhhcccc
Confidence            99999999988889999999999999999999999999999998766543  249999999987653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.97  E-value=3.7e-31  Score=195.91  Aligned_cols=138  Identities=26%  Similarity=0.420  Sum_probs=125.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCe-------EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGAR-------VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~-------v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      +++|||||++|||+++|++|+++|++       |++++|+++++++..+++.. .+.++..+.+|++|++++++++++  
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~-~g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-EGALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            46899999999999999999999998       89999999999999888865 467889999999999998877654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                        +|++|+||||||.....++.+.++++|++++++|+.|+++++|.++|+|++++.|   +||++||.++..|
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G---~Ii~isS~~~~~~  150 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG---HIFFITSVAATKA  150 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTSC
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCC---ceEEEechhhcCC
Confidence              6899999999999999999999999999999999999999999999999987765   9999999988764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.97  E-value=6e-31  Score=196.41  Aligned_cols=139  Identities=30%  Similarity=0.399  Sum_probs=125.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~id  113 (179)
                      |++|||||++|||+++|++|+++|++|++++|++++++++.+++.. .+.++..+.+|++|++++++++++    +|++|
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ-AGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            6789999999999999999999999999999999999999888865 467889999999999998887654    68999


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +||||||.....++.+.++++|++.+++|+.|+++++|+++|+|.+++.  .++|+++||.++..|
T Consensus        81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--~g~Iv~isS~~~~~~  144 (255)
T d1gega_          81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH--GGKIINACSQAGHVG  144 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGTSC
T ss_pred             EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcc--ccccccccchhhccc
Confidence            9999999988889999999999999999999999999999999877654  358999999988653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.1e-31  Score=195.97  Aligned_cols=135  Identities=32%  Similarity=0.448  Sum_probs=118.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ++||++|||||++|||+++|++|+++|++|++++|+++..+ ..+++    +  ...+++|++|++++++++++    +|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~----~--~~~~~~Dv~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI----G--GAFFQVDLEDERERVRFVEEAAYALG   75 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH----T--CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc----C--CeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999987543 33322    2  34678999999998877654    68


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|+||||||...+.++.+.+.|+|++++++|+.++++++|+++|.|++++.|   +||++||.++..|
T Consensus        76 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G---~Ii~isS~~~~~~  141 (248)
T d2d1ya1          76 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGG---AIVNVASVQGLFA  141 (248)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE---EEEEECCGGGTSB
T ss_pred             CCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccc---ccccccccccccc
Confidence            99999999999988999999999999999999999999999999999887654   9999999988654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=193.17  Aligned_cols=143  Identities=24%  Similarity=0.329  Sum_probs=129.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh----
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.... +.++..+.+|++++++++++++.    
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            3799999999999999999999999999999999999999999999887653 46788999999999998887654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|++|||||...+.++.+.++++|++.+++|+.+++++++.++|.|++.+. ..++||++||.+|.
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~  154 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNV-DDGHIININSMSGH  154 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CSCEEEEECCGGGT
T ss_pred             cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc-CCCceEEEechHhc
Confidence            689999999999999899999999999999999999999999999999987653 23599999998875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.97  E-value=7.3e-31  Score=196.48  Aligned_cols=146  Identities=29%  Similarity=0.489  Sum_probs=130.2

Q ss_pred             CCCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           30 PVRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        30 ~~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .+.++++||++|||||++|||+++|++|+++|++|++++|+++++++..+++....+.++..+.+|+++++++++++++ 
T Consensus         2 ~~~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~   81 (260)
T d1h5qa_           2 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQI   81 (260)
T ss_dssp             CEEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999888888888777788899999999999999887654 


Q ss_pred             ---hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 ---AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                         ++++|++|||||...+.++.+.+.++|++.+++|+.|+++++|.+.|.|.+++.  .+.|++++|..+.
T Consensus        82 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~--~g~i~~~~s~~~~  151 (260)
T d1h5qa_          82 DADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ--KGSIVVTSSMSSQ  151 (260)
T ss_dssp             HHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEEECCGGGT
T ss_pred             HHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhccccccccc--ceEEEEeeccccc
Confidence               689999999999998899999999999999999999999999999999976654  3478887776543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.97  E-value=5.6e-31  Score=196.29  Aligned_cols=138  Identities=22%  Similarity=0.374  Sum_probs=124.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++||+++||||++|||+++|++|+++|++|++++|+++++++..+++    +.+...+.+|+++++++++++++    +
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH----CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            379999999999999999999999999999999999999888877765    45677889999999998877654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|++|||||...+.++.+.+.|+|++.+++|+.++++++|.++|.|++++    ++||++||.++..|
T Consensus        79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~----G~Iv~isS~~~~~~  144 (253)
T d1hxha_          79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG----GSIINMASVSSWLP  144 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC----EEEEEECCGGGTSC
T ss_pred             CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC----CceecccchhhhcC
Confidence            8999999999998888999999999999999999999999999999996542    49999999988754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.97  E-value=1e-30  Score=193.95  Aligned_cols=138  Identities=30%  Similarity=0.421  Sum_probs=123.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEe-cChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILA-RSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~~i  112 (179)
                      +++|||||++|||+++|++|+++|++|++.+ |+++.+++..+++.. .+.++..+.+|++|++++++++++    ++++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-HTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999876 566677777777754 467889999999999999887654    6899


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |+||||||.....++.+.+.++|++++++|+.++++++|.++|.|++++.|   +||++||.+|..|
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G---~IVnisS~~~~~~  144 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKG---RIINIASVVGLIG  144 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCTHHHHC
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCc---EEEEEcChhhcCC
Confidence            999999999999999999999999999999999999999999999987665   9999999987653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=193.61  Aligned_cols=136  Identities=30%  Similarity=0.467  Sum_probs=120.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|+++.+++..+++     ..+..+.+|++|++++++++++    +
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999998888776654     2467889999999999887654    6


Q ss_pred             CCCcEEEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|+||||||... ..++++.+.++|++++++|+.++++++|+++|.|++++ |   +||++||.++..
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G---~Ii~isS~~~~~  143 (250)
T d1ydea1          78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-G---NVINISSLVGAI  143 (250)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCHHHHH
T ss_pred             CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-C---CCcccccccccc
Confidence            89999999999764 45688899999999999999999999999999998653 3   999999988754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.97  E-value=2.9e-30  Score=193.99  Aligned_cols=140  Identities=24%  Similarity=0.370  Sum_probs=124.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~  109 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|+++++++..+++..  ...+.++.+|++|+++++++++    ++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--PDVISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999999999999988888753  3457788999999999988765    46


Q ss_pred             CCCcEEEecCCCCCCC--CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          110 GPVDVLVVNQGVFVPG--ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       110 ~~id~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +++|++|||||.....  .+.+.++|+|++++++|+.|+++++|.++|.|.+++.|   +|+++||.++..
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g---~ii~iss~~~~~  148 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG---SIVFTASISSFT  148 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE---EEEEECCGGGTC
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCC---Cccccccccccc
Confidence            8999999999987644  47788999999999999999999999999999887655   999999988764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.97  E-value=5.9e-30  Score=191.22  Aligned_cols=143  Identities=28%  Similarity=0.449  Sum_probs=129.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++||++|||||++|||+++|++|+++|++|++++|+++++++..+++.. .+..+..+.+|+++.+++++++++    
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~-~~~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-KGLNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999988887754 467788899999999999887654    


Q ss_pred             h-CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 A-GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~-~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      + +++|++|||||.....++.+.+.++|++++++|+.+++++++++.|.|.+++.|   +|+++||.++..|
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g---~ii~isS~~~~~~  149 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG---NVIFLSSIAGFSA  149 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE---EEEEECCGGGTSC
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccc---ccccccccccccc
Confidence            4 579999999999999999999999999999999999999999999999988765   9999999988754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3.5e-30  Score=190.83  Aligned_cols=133  Identities=32%  Similarity=0.425  Sum_probs=117.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++++||+++||||++|||+++|++|+++|++|++++|+++++++..+++      ....+.+|++|++++++++++    
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~   74 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------GAHPVVMDVADPASVERGFAEALAH   74 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHh
Confidence            3478999999999999999999999999999999999998887766543      346789999999999887654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      ++++|+||||||...+.++.+.+.|+|++.+++|+.++++++|+++|.|++++.+   .++++||.
T Consensus        75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~---~i~~~ss~  137 (242)
T d1ulsa_          75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPG---SIVLTASR  137 (242)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCE---EEEEECCG
T ss_pred             cCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccc---eeeeeccc
Confidence            6899999999999988999999999999999999999999999999999876653   77777764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=2.2e-30  Score=191.30  Aligned_cols=132  Identities=31%  Similarity=0.499  Sum_probs=112.1

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      .+++||++|||||++|||+++|++|+++|++|++++|+++..            .++..+.+|++|++++++++++    
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~   70 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP------------KGLFGVEVDVTDSDAVDRAFTAVEEH   70 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC------------TTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh------------cCceEEEEecCCHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999999999987542            2356789999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++++|+||||||...+.++.+.+.|+|++++++|+.++++++|.++|.|++++.|   +||++||.++..|
T Consensus        71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g---~Iv~isS~~~~~~  138 (237)
T d1uzma1          71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG---RMIFIGSVSGLWG  138 (237)
T ss_dssp             HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE---EEEEECCCCC---
T ss_pred             cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCC---ceEEEcchhhccC
Confidence            6899999999999988899999999999999999999999999999999988765   9999999988654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-29  Score=192.25  Aligned_cols=139  Identities=25%  Similarity=0.350  Sum_probs=125.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh----cCceEEEEEeeCCCHHHHHHHHHh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA----TGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ..++||++|||||++|||+++|++|+++|++|++++|+++++++..+++...    .+.++..+.+|++|++++++++++
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999998888887643    356899999999999998887654


Q ss_pred             ----hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          109 ----AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       109 ----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                          ++++|+||||||.....++.+.++++|++.+++|+.++++++|+++|.|.+++.+   +|+++|+.
T Consensus        88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g---~Ii~~ss~  154 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGG---SIVNIIVP  154 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE---EEEEECCC
T ss_pred             HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccc---cccccccc
Confidence                6899999999999888999999999999999999999999999999999988765   88888664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.2e-29  Score=190.89  Aligned_cols=142  Identities=32%  Similarity=0.423  Sum_probs=120.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|+++++++..+++....  +.++..+.+|+++++++++++++   
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999998886542  35689999999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCCCCc----ccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGEL----EVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       ++++|++|||||...+.++    .+.+.++|++++++|+.++++++|+++|.|++++.+   .|+++||.++..
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~---iI~~~Ss~a~~~  153 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGE---IVNVSSIVAGPQ  153 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEECCGGGSSS
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCc---cccccchhcccc
Confidence             6899999999998776544    457788999999999999999999999999876432   444444455554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.8e-29  Score=189.10  Aligned_cols=141  Identities=28%  Similarity=0.367  Sum_probs=123.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHh----
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      ++||+++||||++|||+++|++|+++|++|++++|+++++++..+++....  +.++..+.+|+++++++++++++    
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999998887543  34688999999999998877654    


Q ss_pred             hCCCcEEEecCCCCCCC--CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 AGPVDVLVVNQGVFVPG--ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      +|++|++|||||.....  +..+.+.|+|++.+++|+.+++.++|++.|.|++++.+   +|+++||.++..
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g---~ii~~ss~~~~~  150 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGE---IVNVSSIVAGPQ  150 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE---EEEECCGGGSSS
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccc---cccchhhhhccc
Confidence            68999999999976443  45567889999999999999999999999999887654   889988887654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.4e-29  Score=188.58  Aligned_cols=138  Identities=33%  Similarity=0.439  Sum_probs=114.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|+++++++..+++....  +.++..+.+|+++++++++++++   
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999998886542  34688999999999998887654   


Q ss_pred             -hCCCcEEEecCCCCCCC----CcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          109 -AGPVDVLVVNQGVFVPG----ELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~----~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                       ++++|++|||||...+.    ++.+.+.|+|++.+++|+.++++++|+++|+|++++.    .+|+++|..
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g----~iI~~~S~~  149 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG----EIVNISSIA  149 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC----EEEEECCTT
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC----cceeeeeec
Confidence             68999999999976432    4556789999999999999999999999999987653    566666654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.2e-30  Score=196.61  Aligned_cols=140  Identities=28%  Similarity=0.407  Sum_probs=116.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh---------hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG---------EKLEEAKQSIQLATGIEVATYSADVRDFDAVK  103 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~---------~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~  103 (179)
                      ++++||++|||||++|||+++|++|+++|++|+++|++.         +.+++..+++... +.   ...+|+++.++++
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~d~~~~~~~~   78 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-GG---KAVANYDSVEAGE   78 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-TC---EEEEECCCGGGHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhc-cc---ccccccchHHHHH
Confidence            457999999999999999999999999999999997653         3455666655432 22   3456777766655


Q ss_pred             HH----HHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          104 TA----LDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       104 ~~----~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++    .+++|++|+||||||...+.++.+.++++|++++++|+.|+++++|.++|+|++++.|   +||++||.+|..|
T Consensus        79 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G---~IV~isS~~~~~~  155 (302)
T d1gz6a_          79 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG---RIIMTASASGIYG  155 (302)
T ss_dssp             HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE---EEEEECCHHHHHC
T ss_pred             HHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCc---EEEEeCChhhcCC
Confidence            44    4567999999999999999999999999999999999999999999999999988755   9999999987653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.96  E-value=4.9e-29  Score=187.94  Aligned_cols=138  Identities=32%  Similarity=0.484  Sum_probs=117.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----hh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----EA  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~~  109 (179)
                      +++||++|||||++|||+++|++|+++|++|++++|+++++++..+++    +.++..+.+|++++++++++++    ++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH----GDNVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCCeeEEecccccHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999998887766554    4678899999999999887764    46


Q ss_pred             CCCcEEEecCCCCCCCC-----cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGE-----LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|++|||||......     ..+.++++|++++++|+.++++++|+++|.|++++ |   +||+++|.++..|
T Consensus        78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g---~iI~i~S~~~~~~  148 (276)
T d1bdba_          78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-G---NVIFTISNAGFYP  148 (276)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEECCGGGTST
T ss_pred             CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-C---CceeeeechhccC
Confidence            89999999999865432     23445667999999999999999999999998764 3   8999999887654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-29  Score=187.21  Aligned_cols=137  Identities=23%  Similarity=0.326  Sum_probs=121.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +.||++|||||++|||+++|++|+++|++|++++|+++++++..+++... .+.++..+.+|+++++++++++++    +
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999999999999888887654 356789999999999998887654    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      |++|+||||||....        ++|++.+++|+.+++.+++.++|.|.+++.+..++||++||.+|..|
T Consensus        81 G~iDilVnnAg~~~~--------~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~  142 (254)
T d2gdza1          81 GRLDILVNNAGVNNE--------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP  142 (254)
T ss_dssp             SCCCEEEECCCCCCS--------SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC
T ss_pred             CCcCeeccccccccc--------ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC
Confidence            899999999997543        45888999999999999999999998887766689999999988754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.96  E-value=5.4e-29  Score=185.60  Aligned_cols=139  Identities=19%  Similarity=0.296  Sum_probs=116.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC-CHHHHHHHHH----
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR-DFDAVKTALD----  107 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~v~~~~~----  107 (179)
                      ++++||++|||||++|||+++|++|+++|++|++++|+.++.++..+......+..+.++.+|++ +.++++++++    
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD   80 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999888776655544444445678999999998 6666766554    


Q ss_pred             hhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          108 EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       108 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++++|+||||||..        ++++|++++++|+.|++++++.++|.|.+++.+..++||++||.+|..|
T Consensus        81 ~~g~iDilvnnAG~~--------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~  144 (254)
T d1sbya1          81 QLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA  144 (254)
T ss_dssp             HHSCCCEEEECCCCC--------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC
T ss_pred             HcCCCCEEEeCCCCC--------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccC
Confidence            468999999999953        4577899999999999999999999998887666789999999998754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=190.06  Aligned_cols=135  Identities=25%  Similarity=0.343  Sum_probs=119.5

Q ss_pred             Cc-EEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           37 DR-HVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        37 ~k-~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      || ++|||||++|||+++|++|+++ |++|++++|+++++++..+++... +.++.++.+|++|.+++++++++    ++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-GLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            44 5699999999999999999987 899999999999999999888654 56788899999999998877654    68


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++|+||||||...+.+..+.+.++|+.++++|+.|++++++.++|.|+++     ++||++||.++.
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-----g~ivnisS~~~~  142 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-----GRVVNVSSIMSV  142 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-----EEEEEECCHHHH
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCccccccccee
Confidence            99999999999888888888899999999999999999999999999643     399999998764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.5e-28  Score=182.02  Aligned_cols=141  Identities=29%  Similarity=0.416  Sum_probs=128.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----hC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----AG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~~  110 (179)
                      ++||++|||||++|||+++|++|+++|++|++++|+++++++..+++....+..+..+.+|.++.+.++...+.    .+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            79999999999999999999999999999999999999999999888777788899999999998887766543    58


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      .+|+++||||.....++.+.+.++|++++++|+.|++.+++.++|+|++++ |   +|+++||.+|..|
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G---~ii~isS~~~~~~  156 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-G---SIVVVSSLAGKVA  156 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C---EEEEEEEGGGTSC
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-C---cceEeccchhcCC
Confidence            899999999998888888899999999999999999999999999997653 3   9999999998764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-28  Score=182.60  Aligned_cols=145  Identities=23%  Similarity=0.263  Sum_probs=126.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHH---cCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAK---EGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~---~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      .++||+++||||++|||+++|++|++   +|++|++++|++++++++.+++... .+.++..+++|++++++++++++. 
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            57899999999999999999999986   7999999999999999999988754 366899999999999999888754 


Q ss_pred             -------hCCCcEEEecCCCCCC---CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -------AGPVDVLVVNQGVFVP---GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -------~~~id~li~~ag~~~~---~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                             .+.+|++|||||...+   +++.+.++++|++++++|+.++++++|.++|+|++++ +..++||++||.++..
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~-~~~g~Iv~isS~~~~~  161 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSP-GLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCT-TCEEEEEEECCGGGTS
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcccccccccccccC
Confidence                   2467899999997643   4578899999999999999999999999999998754 2346999999998865


Q ss_pred             C
Q 030328          179 G  179 (179)
Q Consensus       179 g  179 (179)
                      |
T Consensus       162 ~  162 (259)
T d1oaaa_         162 P  162 (259)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=4.5e-28  Score=178.60  Aligned_cols=129  Identities=28%  Similarity=0.424  Sum_probs=114.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++||++|||||++|||+++|++|+++|++|++++|+++.+++.        +.  .++.+|+++  +++.++++++++|+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~--------~~--~~~~~Dv~~--~~~~~~~~~g~iD~   69 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS--------GH--RYVVCDLRK--DLDLLFEKVKEVDI   69 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT--------CS--EEEECCTTT--CHHHHHHHSCCCSE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc--------CC--cEEEcchHH--HHHHHHHHhCCCcE
Confidence            6899999999999999999999999999999999997654321        22  457899986  36788899999999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      ||||||.....++.+.+.++|++.+++|+.+++.++|.++|.|++++.|   +||+++|..+..
T Consensus        70 lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G---~ii~i~S~~~~~  130 (234)
T d1o5ia_          70 LVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG---RIVAITSFSVIS  130 (234)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCGGGTS
T ss_pred             EEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccc---cccccccccccc
Confidence            9999999888899999999999999999999999999999999987765   999999987654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.95  E-value=7.7e-28  Score=179.82  Aligned_cols=138  Identities=23%  Similarity=0.308  Sum_probs=118.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec-ChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR-SGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----E  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----~  108 (179)
                      +++||++|||||++|||+++|++|+++|++|+++++ +++..++..+++.. .+.++..+.+|++|+++++++++    +
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~-~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK-LGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH-cCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999998765 55556777777654 46788999999999999887765    4


Q ss_pred             hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      ++++|++|||||.....++.+.+.++|++.+++|+.++++++|.++|+|++++     .+++++|..+.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g-----~~iii~s~~~~  145 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGG-----RIILTSSIAAV  145 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEE-----EEEEECCGGGT
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCC-----ccccccccccc
Confidence            68999999999999889999999999999999999999999999999996542     66667665543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.95  E-value=1.1e-27  Score=177.22  Aligned_cols=134  Identities=28%  Similarity=0.354  Sum_probs=113.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++..+++|+++++++++++++    +
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL----EAEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC----CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999998776555443    56788899999999999887765    5


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      +++|++|||||.....++.+.+.++|++.+++|+.+++.++|.+.|.|.+.+     .++++||.+.
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~-----~i~~~ss~a~  139 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGG-----SLVLTGSVAG  139 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC-----EEEEECCCTT
T ss_pred             CCccEeccccccccccchhhhhcccccccccccccccccccccccccccccc-----ceeecccccc
Confidence            8999999999998888999999999999999999999999999999876532     6666666554

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=179.49  Aligned_cols=140  Identities=34%  Similarity=0.464  Sum_probs=118.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEE---ecChhHHHHHHHHHHh--hcCceEEEEEeeCCCHHHHHHHHHhh--
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSIL---ARSGEKLEEAKQSIQL--ATGIEVATYSADVRDFDAVKTALDEA--  109 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~---~r~~~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~v~~~~~~~--  109 (179)
                      .|++|||||++|||+++|++|+++|++++.+   .|+.+..++..+....  ..+.++..+.+|++|.+++++++++.  
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            5789999999999999999999999985544   5554444433333222  23668999999999999999998764  


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|+++||||.....++.+.+.|+|++.+++|+.|+++++|+++|.|++++.|   +||++||.+|..|
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G---~Iv~isS~~g~~~  148 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG---RVLVTGSVGGLMG  148 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEEEEGGGTSC
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCC---ceEEEechhhcCC
Confidence            789999999999998999999999999999999999999999999999987755   9999999998764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-27  Score=175.56  Aligned_cols=134  Identities=27%  Similarity=0.334  Sum_probs=120.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++||++|||||++|||+++|++|+++|++|++++|+++++++..+      ...+....+|+.+.+.++...+..+++|+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~id~   77 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK------YPGIQTRVLDVTKKKQIDQFANEVERLDV   77 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG------STTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh------ccCCceeeeecccccccccccccccccee
Confidence            799999999999999999999999999999999999877654432      23467788999999999999988899999


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +|||||...+.++.+.+.++|++.+++|+.+++.++|.+.|.|.+++.|   +|+++||.++.
T Consensus        78 lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g---~Ii~isS~~~~  137 (245)
T d2ag5a1          78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG---NIINMSSVASS  137 (245)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE---EEEEECCSBTT
T ss_pred             EEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCc---eeeeeechhhc
Confidence            9999999999899999999999999999999999999999999888765   99999998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.95  E-value=6.5e-27  Score=175.88  Aligned_cols=140  Identities=24%  Similarity=0.413  Sum_probs=121.5

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh-hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG-EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--  108 (179)
                      ...++||++|||||++|||+++|++|+++|++|++++++. +.++++.+++.. .+.++..+.+|+++++++++.+++  
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~-~g~~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK-NGSDAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHh-hCCceeeEeCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999999999999999999998874 556666666654 467889999999999998887654  


Q ss_pred             --hCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          109 --AGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       109 --~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                        ++++|++|||+|.....++.+.+.++|++.+++|+.+++.++|.+.|.|+++  +   ++++++|..+.
T Consensus        92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--g---~~i~i~s~~~~  157 (272)
T d1g0oa_          92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG--G---RLILMGSITGQ  157 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT--C---EEEEECCGGGT
T ss_pred             HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc--c---ccccccccccc
Confidence              6899999999999988899999999999999999999999999999999754  2   78888887654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.4e-27  Score=176.02  Aligned_cols=141  Identities=25%  Similarity=0.353  Sum_probs=118.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH---HcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----
Q 030328           36 KDRHVFITGGSSGIGLALAHQAA---KEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----  108 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~---~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----  108 (179)
                      +.|+||||||++|||+++|++|+   ++|++|++++|+++++++..+.. . .+.++..+.+|++|+++++++++.    
T Consensus         1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLA-K-NHSNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHH-H-HCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-h-cCCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            46899999999999999999996   57999999999998877665433 2 256788999999999998887653    


Q ss_pred             --hCCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC--------CCCcEEEEecccCcc
Q 030328          109 --AGPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN--------GGPASIALMSSQAGQ  177 (179)
Q Consensus       109 --~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--------~~~~~iv~iss~~g~  177 (179)
                        .+++|+||||||.... .++.+.+.++|++++++|+.|++.+++.++|.|+++..        ...+++|+++|.+|.
T Consensus        79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~  158 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  158 (248)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence              4789999999998665 46778899999999999999999999999999987531        134599999999876


Q ss_pred             c
Q 030328          178 V  178 (179)
Q Consensus       178 ~  178 (179)
                      +
T Consensus       159 ~  159 (248)
T d1snya_         159 I  159 (248)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.95  E-value=2.5e-27  Score=176.31  Aligned_cols=131  Identities=18%  Similarity=0.157  Sum_probs=110.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH----HHhhCCCcE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA----LDEAGPVDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~----~~~~~~id~  114 (179)
                      ++|||||++|||+++|++|+++|++|++++|+.+..++.......       ...+|+++.++++++    .+++|++|+
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------~~~~dv~~~~~~~~~~~~~~~~~G~iDi   74 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET-------YPQLKPMSEQEPAELIEAVTSAYGQVDV   74 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH-------CTTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc-------EEEeccCCHHHHHHHHHHHHHHcCCCCE
Confidence            799999999999999999999999999999998877766543322       124677766665554    455799999


Q ss_pred             EEecCCCCC-CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          115 LVVNQGVFV-PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       115 li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ||||||... ..++.+.++|+|++.+++|+.++++++|+++|+|++++.|   +||++||.++..|
T Consensus        75 LVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G---~IV~isS~~~~~~  137 (252)
T d1zmta1          75 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG---HIIFITSATPFGP  137 (252)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---EEEEECCSTTTSC
T ss_pred             EEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccc---eeecccccccccc
Confidence            999999765 4688999999999999999999999999999999988765   9999999988754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.2e-26  Score=173.03  Aligned_cols=140  Identities=18%  Similarity=0.251  Sum_probs=116.3

Q ss_pred             CcCcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-
Q 030328           32 RIPIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-  108 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-  108 (179)
                      ..+++||++|||||+|  |||+++|++|+++|++|++++|+++..++..+ .... +.....+.+|++|++++++++++ 
T Consensus         3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~D~~~~~~v~~~~~~~   80 (256)
T d1ulua_           3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK-LAEA-LGGALLFRADVTQDEELDALFAGV   80 (256)
T ss_dssp             EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HHHH-TTCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH-hhhc-cCcccccccccCCHHHHHHHHHHH
Confidence            4578999999999987  99999999999999999999998765554433 3322 34567789999999998887654 


Q ss_pred             ---hCCCcEEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 ---AGPVDVLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 ---~~~id~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                         ++++|++|||||....    .++.+.+.++|+..+++|+.+++.+++.+.|.|++.     ++||++||.++..
T Consensus        81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-----G~Iv~isS~~~~~  152 (256)
T d1ulua_          81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG-----GGIVTLTYYASEK  152 (256)
T ss_dssp             HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-----EEEEEEECGGGTS
T ss_pred             HHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccC-----CEEEEEeehHhcC
Confidence               6899999999997643    356678899999999999999999999999998643     3899999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.94  E-value=3.2e-25  Score=168.14  Aligned_cols=142  Identities=23%  Similarity=0.317  Sum_probs=126.1

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++..+.+|+++.++++++++.    +
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence            689999999999999999999999999999999999999999998888777788899999999999998876544    6


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcc
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~  177 (179)
                      +++|++|||||.....++.+.+.++++..+.+|..+++.+.+...+.+...+.  ...+++++|.++.
T Consensus       102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~i~~~ss~~~~  167 (294)
T d1w6ua_         102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK--GAAFLSITTIYAE  167 (294)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CEEEEEECCTHHH
T ss_pred             cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccc--cccccccccchhh
Confidence            89999999999988888999999999999999999999999988887766554  3478888876543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1.3e-25  Score=166.83  Aligned_cols=138  Identities=26%  Similarity=0.346  Sum_probs=114.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      +.|+||||||++|||+++|++|+++|+  +|++++|+++++++..    ...+.++..+.+|+++.+++++++++    +
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~----~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   77 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----SIKDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----TCCCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH----HhhCCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence            569999999999999999999999996  5888999988776543    33456788999999999999887654    2


Q ss_pred             C--CCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCC--------CCcEEEEecccCcc
Q 030328          110 G--PVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNG--------GPASIALMSSQAGQ  177 (179)
Q Consensus       110 ~--~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--------~~~~iv~iss~~g~  177 (179)
                      +  ++|+||||||...+ .+..+.+.++|++++++|+.|++++++.++|+|++...+        ..+.++++++..+.
T Consensus        78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~  156 (250)
T d1yo6a1          78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGS  156 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGC
T ss_pred             CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccc
Confidence            3  59999999998654 567788999999999999999999999999999876421        23578888876543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=156.10  Aligned_cols=142  Identities=30%  Similarity=0.407  Sum_probs=117.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh----h
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE----A  109 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~----~  109 (179)
                      .++||++|||||++|||+++|++|+++|++|++++|+++.+++..+++    +.......+|..+.+++++..+.    .
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL----GNNCVFAPADVTSEKDVQTALALAKGKF   77 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCCccccccccccccccccccccccccc
Confidence            479999999999999999999999999999999999999888777665    45677788999998887665543    4


Q ss_pred             CCCcEEEecCCCCCC------CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc---CCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVP------GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ---NGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~------~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~~~~~iv~iss~~g~~g  179 (179)
                      +..|.+++|++....      .+..+.+.|+|++++++|+.++++++|++.|.|....   +...++||++||.++..|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~  156 (248)
T d2o23a1          78 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG  156 (248)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC
T ss_pred             ccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC
Confidence            688999998776543      3456778999999999999999999999999987652   123469999999987643

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.89  E-value=1.7e-22  Score=150.43  Aligned_cols=136  Identities=21%  Similarity=0.339  Sum_probs=114.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChh---HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGE---KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~---~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--  109 (179)
                      .++++|||||++|||+++|++|+++|++ |++++|+.+   ..++..+++.. .+.++.++.+|++|.++++++++..  
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-~g~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA-LGARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHh-ccccccccccccchHHHHHHhhccccc
Confidence            5779999999999999999999999995 888988754   34555555543 4788999999999999999988764  


Q ss_pred             -CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 -GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 -~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                       +++|.++||+|.....++.+.++++|+..+++|+.+++.+.+.+.    +.+   .+.||++||.++..|
T Consensus        87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~----~~~---~~~iv~~SS~a~~~g  150 (259)
T d2fr1a1          87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTR----ELD---LTAFVLFSSFASAFG  150 (259)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHT----TSC---CSEEEEEEEHHHHTC
T ss_pred             cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhh----ccC---CceEeeecchhhccC
Confidence             479999999999999999999999999999999999999887642    233   349999999987654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=5.6e-23  Score=151.20  Aligned_cols=128  Identities=15%  Similarity=0.128  Sum_probs=101.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh------h
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE------A  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~------~  109 (179)
                      ++|++|||||++|||+++|++|+++|++|+++++++++.           ........+|.++.++.+++.+.      .
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE-----------ASASVIVKMTDSFTEQADQVTAEVGKLLGD   69 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT-----------SSEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-----------ccccceeecccCcHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999876421           22334456677666666554332      2


Q ss_pred             CCCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          110 GPVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       110 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      +++|++|||||.... .+..+.+.++|++.+++|+.+++.+++.++|+|++.     ++||++||.++..|
T Consensus        70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-----G~Iv~isS~~~~~~  135 (236)
T d1dhra_          70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-----GLLTLAGAKAALDG  135 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-----EEEEEECCGGGGSC
T ss_pred             CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-----cceeEEccHHHcCC
Confidence            479999999996554 455566788999999999999999999999999542     39999999988654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.88  E-value=7.5e-22  Score=148.44  Aligned_cols=141  Identities=21%  Similarity=0.229  Sum_probs=105.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC-hhHHHHHHHHHHhhcCceEEEEE-----------------eeCCCH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARS-GEKLEEAKQSIQLATGIEVATYS-----------------ADVRDF   99 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~v~~~~-----------------~D~~~~   99 (179)
                      .++|||||++|||+++|++|+++|++|++++++ ++..++..+++....+.....+.                 +|+++.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~   82 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF   82 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence            579999999999999999999999999988765 55667777777665555555444                 558888


Q ss_pred             HHHHHHHH----hhCCCcEEEecCCCCCCCCcccCCHHHHH--------------HHHHhhhhHHHHHHHHHcHHHHhc-
Q 030328          100 DAVKTALD----EAGPVDVLVVNQGVFVPGELEVQSLDEVR--------------LMIDVNIIGSFHMIKAALPLIKKR-  160 (179)
Q Consensus       100 ~~v~~~~~----~~~~id~li~~ag~~~~~~~~~~~~~~~~--------------~~~~~n~~~~~~l~~~~~~~~~~~-  160 (179)
                      ++++++++    ++|++|+||||||...+.++.+.+.++|+              ..+.+|+.+++++.+.+.+.+... 
T Consensus        83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~  162 (284)
T d1e7wa_          83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP  162 (284)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence            88877765    46899999999999888777766655554              478999999999999988875432 


Q ss_pred             --cCCCCcEEEEecccCccc
Q 030328          161 --QNGGPASIALMSSQAGQV  178 (179)
Q Consensus       161 --~~~~~~~iv~iss~~g~~  178 (179)
                        ..+..++|++++|..+..
T Consensus       163 ~~~~~~~~~ii~~~s~~~~~  182 (284)
T d1e7wa_         163 AKHRGTNYSIINMVDAMTNQ  182 (284)
T ss_dssp             GGGSCSCEEEEEECCTTTTS
T ss_pred             HHhcCCCCcccccccccccC
Confidence              223456899999887654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=1.1e-22  Score=149.52  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=98.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHH----H--hhC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTAL----D--EAG  110 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~----~--~~~  110 (179)
                      +++||||||++|||+++|++|+++|++|++++|++++.           ........+|..+.++.....    +  +++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   70 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ-----------ADSNILVDGNKNWTEQEQSILEQTASSLQGS   70 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT-----------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc-----------ccccceeccccCchhHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999999999986531           122333455666555543322    2  247


Q ss_pred             CCcEEEecCCCCCC-CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCcccC
Q 030328          111 PVDVLVVNQGVFVP-GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQVG  179 (179)
Q Consensus       111 ~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~g  179 (179)
                      ++|+||||||.... .+..+.+.+.|+.++++|+.+++.+++.++|+|++.     ++|+++||.++..|
T Consensus        71 ~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-----g~Iv~isS~~~~~~  135 (235)
T d1ooea_          71 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-----GLLQLTGAAAAMGP  135 (235)
T ss_dssp             CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-----EEEEEECCGGGGSC
T ss_pred             CeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-----eEEEEeccHHhcCC
Confidence            89999999997654 345555678899999999999999999999999542     39999999987654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.86  E-value=4e-21  Score=145.30  Aligned_cols=140  Identities=18%  Similarity=0.174  Sum_probs=99.5

Q ss_pred             CCcCcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--------Cc---eEEEEEeeC-
Q 030328           31 VRIPIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--------GI---EVATYSADV-   96 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~---~v~~~~~D~-   96 (179)
                      +.++++||++|||||+|  |||+++|++|+++|++|++++|++..............        +.   .-....+|. 
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV   81 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence            45678999999999876  99999999999999999999998654332222111100        00   012223331 


Q ss_pred             -------------------CC---HH-HHHHHHHhhCCCcEEEecCCCCC--CCCcccCCHHHHHHHHHhhhhHHHHHHH
Q 030328           97 -------------------RD---FD-AVKTALDEAGPVDVLVVNQGVFV--PGELEVQSLDEVRLMIDVNIIGSFHMIK  151 (179)
Q Consensus        97 -------------------~~---~~-~v~~~~~~~~~id~li~~ag~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~  151 (179)
                                         ++   .+ -++++.++++++|+||||||...  ..++.+.+.++|++.+++|+.+++.+++
T Consensus        82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~  161 (297)
T d1d7oa_          82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS  161 (297)
T ss_dssp             CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence                               11   12 23445566799999999999754  4678889999999999999999999999


Q ss_pred             HHcHHHHhccCCCCcEEEEecccC
Q 030328          152 AALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       152 ~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++.|.|.+.+     .++.+++.+
T Consensus       162 ~~~~~~~~~g-----~~~~~~~~~  180 (297)
T d1d7oa_         162 HFLPIMNPGG-----ASISLTYIA  180 (297)
T ss_dssp             HHGGGEEEEE-----EEEEEECGG
T ss_pred             HHHHHhhcCC-----cceeeeehh
Confidence            9999886553     445555443

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.85  E-value=1.8e-21  Score=149.51  Aligned_cols=138  Identities=14%  Similarity=0.089  Sum_probs=103.1

Q ss_pred             CCcEEEEEc--CCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-----------CceEEEEEe--------
Q 030328           36 KDRHVFITG--GSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-----------GIEVATYSA--------   94 (179)
Q Consensus        36 ~~k~vlItG--a~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----------~~~v~~~~~--------   94 (179)
                      .+|++||||  +++|||+++|+.|+++|++|++++++...............           ........+        
T Consensus         1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence            379999999  55799999999999999999999988765444333221110           111223333        


Q ss_pred             ------------eCCCHHHHHH----HHHhhCCCcEEEecCCCCCC--CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHH
Q 030328           95 ------------DVRDFDAVKT----ALDEAGPVDVLVVNQGVFVP--GELEVQSLDEVRLMIDVNIIGSFHMIKAALPL  156 (179)
Q Consensus        95 ------------D~~~~~~v~~----~~~~~~~id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  156 (179)
                                  |+++.+++++    +.+++|++|++|||+|....  +++.+.+.++|++.+++|+++++.++|++.|+
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                        3334333443    44557999999999997653  57888999999999999999999999999999


Q ss_pred             HHhccCCCCcEEEEecccCccc
Q 030328          157 IKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       157 ~~~~~~~~~~~iv~iss~~g~~  178 (179)
                      |++.     ++||++||.++..
T Consensus       161 m~~~-----GsIv~iss~~~~~  177 (329)
T d1uh5a_         161 MKPQ-----SSIISLTYHASQK  177 (329)
T ss_dssp             EEEE-----EEEEEEECGGGTS
T ss_pred             cccc-----cccccceeehhcc
Confidence            9542     3899999987754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-19  Score=134.72  Aligned_cols=138  Identities=14%  Similarity=0.192  Sum_probs=109.2

Q ss_pred             CcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++||++|||||++  |||+++|+.|+++|++|++++|+++..+.. +++... .........|.++..++.+.+++   
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV-EEFAAQ-LGSDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH-HHHHHH-TTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHHHhh-cCCcceeecccchHHHHHHHHHHhhh
Confidence            37899999999998  899999999999999999999997655444 333332 33456678899998887776544   


Q ss_pred             -hCCCcEEEecCCCCCCCC-----cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCccc
Q 030328          109 -AGPVDVLVVNQGVFVPGE-----LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAGQV  178 (179)
Q Consensus       109 -~~~id~li~~ag~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g~~  178 (179)
                       .+++|++|||++......     .+....+.|...+++|..+.+.+++.+.|.|.+.     ..|+++||..+..
T Consensus        80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Ii~iss~~~~~  150 (258)
T d1qsga_          80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG-----SALLTLSYLGAER  150 (258)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-----EEEEEEECGGGTS
T ss_pred             cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----cEEEEecchhhcc
Confidence             578999999998765433     2356778899999999999999999999988543     2799999887654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.78  E-value=1.8e-18  Score=128.72  Aligned_cols=121  Identities=17%  Similarity=0.236  Sum_probs=97.9

Q ss_pred             CcCCcEEEEEcC--CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---
Q 030328           34 PIKDRHVFITGG--SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---  108 (179)
Q Consensus        34 ~~~~k~vlItGa--~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---  108 (179)
                      .++||++|||||  ++|||+++|++|+++|++|++++|++++..+   ++....+.+...+.+|++++++++++++.   
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~---~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~   79 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ---RITDRLPAKAPLLELDVQNEEHLASLAGRVTE   79 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH---HHHTTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH---HHHHHcCCceeeEeeecccccccccccchhhh
Confidence            378999999995  4689999999999999999999998875432   23333466777889999999887766543   


Q ss_pred             ----hCCCcEEEecCCCCC-----CCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHH
Q 030328          109 ----AGPVDVLVVNQGVFV-----PGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLI  157 (179)
Q Consensus       109 ----~~~id~li~~ag~~~-----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~  157 (179)
                          .+++|+++||+|...     ..++.+.+.++|...+.+|..+++...+...+.+
T Consensus        80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (268)
T d2h7ma1          80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIM  137 (268)
T ss_dssp             HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhc
Confidence                367999999999653     2356678899999999999999999998887654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.78  E-value=4.9e-18  Score=126.10  Aligned_cols=140  Identities=20%  Similarity=0.247  Sum_probs=102.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCC----HHHHHHHH----Hh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRD----FDAVKTAL----DE  108 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~v~~~~----~~  108 (179)
                      .++|||||++|||+++|++|+++|++|++++|+.+ ..++..+++....+.+......|..+    .+.+++++    ++
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999865 45677777777767777777776654    44454443    45


Q ss_pred             hCCCcEEEecCCCCCCCCcc-----------cCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccC--CCCcEEEEecccC
Q 030328          109 AGPVDVLVVNQGVFVPGELE-----------VQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQN--GGPASIALMSSQA  175 (179)
Q Consensus       109 ~~~id~li~~ag~~~~~~~~-----------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~~~iv~iss~~  175 (179)
                      +|++|++|||||...+.++.           +...+.+...+..|+.+++...+...+.+.....  .....++++++..
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (266)
T d1mxha_          82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM  161 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred             hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence            78999999999987655432           2334567788899999999988877776644332  2345777887766


Q ss_pred             cc
Q 030328          176 GQ  177 (179)
Q Consensus       176 g~  177 (179)
                      +.
T Consensus       162 ~~  163 (266)
T d1mxha_         162 TD  163 (266)
T ss_dssp             GG
T ss_pred             cc
Confidence            53

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=2e-18  Score=126.43  Aligned_cols=130  Identities=28%  Similarity=0.439  Sum_probs=100.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh---hCCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE---AGPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~---~~~id  113 (179)
                      +|++|||||++|||+++|++|+++|++|++++|+++             +.+.....+|+++........+.   ....+
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   67 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-------------GEDLIYVEGDVTREEDVRRAVARAQEEAPLF   67 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-------------SSSSEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc-------------cccceEeeccccchhhhHHHHHhhhcccccc
Confidence            589999999999999999999999999999999864             23456678999998887666543   23556


Q ss_pred             EEEecCCCCCC----CCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc---CCCCcEEEEecccCcccC
Q 030328          114 VLVVNQGVFVP----GELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ---NGGPASIALMSSQAGQVG  179 (179)
Q Consensus       114 ~li~~ag~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~~~~~iv~iss~~g~~g  179 (179)
                      ..+++++....    ......+.+.|++.+++|..+++.+++.+.+.+.+..   +...++||++||.++..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~  140 (241)
T d1uaya_          68 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG  140 (241)
T ss_dssp             EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC
T ss_pred             chhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccC
Confidence            66666654432    2345577899999999999999999999998854431   123469999999987643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.78  E-value=9.6e-19  Score=130.73  Aligned_cols=136  Identities=18%  Similarity=0.234  Sum_probs=93.2

Q ss_pred             CcCCcEEEEEcCCC--chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH----
Q 030328           34 PIKDRHVFITGGSS--GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD----  107 (179)
Q Consensus        34 ~~~~k~vlItGa~~--~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~----  107 (179)
                      .++||++|||||+|  |||+++|++|+++|++|++++|+++. ++..+++... +.......+|+++.++++++++    
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~-~~~~~~l~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL-EKRVRPIAQE-LNSPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT-HHHHHHHHHH-TTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHHHHhh-CCceeEeeecccchhhHHHHHHHHHH
Confidence            36899999999875  89999999999999999999998653 3344444433 4455678999999999777654    


Q ss_pred             hhCCCcEEEecCCCCCCCC----cccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          108 EAGPVDVLVVNQGVFVPGE----LEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       108 ~~~~id~li~~ag~~~~~~----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      .++++|++|||+|......    ..+..++.+...+.++..+.....+...+.+   +.  ...|+++|+.+.
T Consensus        80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~~~s~~~~  147 (274)
T d2pd4a1          80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLL---NN--GASVLTLSYLGS  147 (274)
T ss_dssp             HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE---EE--EEEEEEEECGGG
T ss_pred             HcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccc---cc--Ccceeeeccccc
Confidence            4689999999999765432    3334455555555555555555555443332   21  235666665543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.77  E-value=1e-18  Score=124.27  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=95.3

Q ss_pred             CCcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           31 VRIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        31 ~~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      ...+++||+++||||++|||+++|++|+++|++|++++|++++.++..+++.....  +....+|+++.+++++.++   
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~---   91 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK--VNVTAAETADDASRAEAVK---   91 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT--CCCEEEECCSHHHHHHHTT---
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc--hhhhhhhcccHHHHHHHhc---
Confidence            45578999999999999999999999999999999999999999988888876543  3457899999998877764   


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      ++|+||||||..    +...+.|.|+..+++|+.+.++....+
T Consensus        92 ~iDilin~Ag~g----~~~~~~e~~~~~~~~nv~~~~~~~~~~  130 (191)
T d1luaa1          92 GAHFVFTAGAIG----LELLPQAAWQNESSIEIVADYNAQPPL  130 (191)
T ss_dssp             TCSEEEECCCTT----CCCBCHHHHHTCTTCCEEEECCCSSSC
T ss_pred             CcCeeeecCccc----cccCCHHHHHhhhcceeehhHhhHHHH
Confidence            799999999863    234688999999999988777654433

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.1e-16  Score=121.08  Aligned_cols=129  Identities=17%  Similarity=0.148  Sum_probs=92.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-----HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .|.+|||||+|.||++++++|.++|++|++++|....     .+....+. .....++.++.+|++|.+++++.++.. .
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~   78 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDP-HTCNPKFHLHYGDLSDTSNLTRILREV-Q   78 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHH-C
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhh-hhcCCCeEEEEeecCCHHHHHHHHhcc-C
Confidence            4889999999999999999999999999999996532     22221111 122456888999999999999999877 5


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +|+++|.|+..+...    +.++.+..+++|+.|+.++++++...    +.....++|++||.+
T Consensus        79 ~d~v~h~aa~~~~~~----~~~~~~~~~~~Nv~gt~nllea~~~~----~~~~~~r~i~~SS~~  134 (357)
T d1db3a_          79 PDEVYNLGAMSHVAV----SFESPEYTADVDAMGTLRLLEAIRFL----GLEKKTRFYQASTSE  134 (357)
T ss_dssp             CSEEEECCCCCTTTT----TTSCHHHHHHHHTHHHHHHHHHHHHT----TCTTTCEEEEEEEGG
T ss_pred             CCEEEEeecccccch----hhhCHHHHHHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEchh
Confidence            899999999766432    22344567899999999999886322    212234799999864

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=9e-16  Score=117.46  Aligned_cols=125  Identities=22%  Similarity=0.275  Sum_probs=92.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      ++|||||+|.||++++++|+++|++|+++||.....+.............+.++++|++|.+.+.++++.. ++|++||.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-~~d~ViHl   80 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH-AIDTVIHF   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT-TCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhcc-CCCEEEEC
Confidence            59999999999999999999999999999873322111112222223456888999999999999999876 58999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+....+    .+.++....+++|+.|+.++++++...    +   ..++|.+||.+
T Consensus        81 Aa~~~~~----~~~~~~~~~~~~Nv~gt~nlL~~~~~~----~---v~~~i~~Ss~~  126 (338)
T d1udca_          81 AGLKAVG----ESVQKPLEYYDNNVNGTLRLISAMRAA----N---VKNFIFSSSAT  126 (338)
T ss_dssp             CSCCCHH----HHHHCHHHHHHHHHHHHHHHHHHHHHH----T---CCEEEEEEEGG
T ss_pred             CCccchh----hHHhCHHHHHHhHHHHHHHHHHHHHHh----C---CCEEEecCcce
Confidence            9854321    223345678999999999999987432    2   23888888865

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=2.8e-15  Score=116.81  Aligned_cols=131  Identities=16%  Similarity=0.223  Sum_probs=96.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH----------------HHHHHHHHHhhcCceEEEEEeeCCCHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK----------------LEEAKQSIQLATGIEVATYSADVRDFD  100 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~----------------~~~~~~~~~~~~~~~v~~~~~D~~~~~  100 (179)
                      ||+||||||+|.||.+++++|.++|++|+++|.-..+                ..+.........+.++.++.+|++|.+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence            6899999999999999999999999999999842211                111122222233567899999999999


Q ss_pred             HHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          101 AVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       101 ~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      .++++++.. ++|+++|.|+.... +....+++.....+++|+.|+.++++.+...    +  ....++..||.+
T Consensus        81 ~l~~~~~~~-~~d~ViHlAa~~~~-~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~----~--~~~~~i~~ss~~  147 (393)
T d1i24a_          81 FLAESFKSF-EPDSVVHFGEQRSA-PYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF----G--EECHLVKLGTMG  147 (393)
T ss_dssp             HHHHHHHHH-CCSEEEECCSCCCH-HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH----C--TTCEEEEECCGG
T ss_pred             HHHHHHHhh-cchheecccccccc-ccccccccccccccccccccccHHHHHHHHh----c--cccceeeccccc
Confidence            999999887 69999999986442 2223456777788999999999999876332    1  123667776653

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=3.3e-15  Score=114.59  Aligned_cols=127  Identities=17%  Similarity=0.241  Sum_probs=93.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .|.||||||+|.||++++++|.++|++|+++++..................++.++.+|++|.++++.+++.. ++|++|
T Consensus         1 ~K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d~Vi   79 (347)
T d1z45a2           1 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-KIDSVI   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS-CCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhcc-CCCEEE
Confidence            3789999999999999999999999999999864321111111111122456778899999999999998876 599999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |.|+.....    ...+.......+|+.++..+++++..    .+   ..+++++||.+
T Consensus        80 hlAa~~~~~----~~~~~~~~~~~~N~~~t~~ll~~~~~----~~---i~~~i~~SS~~  127 (347)
T d1z45a2          80 HFAGLKAVG----ESTQIPLRYYHNNILGTVVLLELMQQ----YN---VSKFVFSSSAT  127 (347)
T ss_dssp             ECCSCCCHH----HHHHSHHHHHHHHHHHHHHHHHHHHH----HT---CCEEEEEEEGG
T ss_pred             Ecccccccc----ccccCcccccccchhhhHHHHHHHHh----cc---cceEEeeccee
Confidence            999864321    12234456788999999999988733    22   23899999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.55  E-value=4.3e-14  Score=104.01  Aligned_cols=110  Identities=23%  Similarity=0.311  Sum_probs=85.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-----hCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-----AGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-----~~~  111 (179)
                      .|++|||||++|||+++|++|+++|++|++++|++++                  ..+|+.+.+..+.....     .+.
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~------------------~~~d~~~~~~~~~~~~~~~~~~~~~   62 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE------------------VIADLSTAEGRKQAIADVLAKCSKG   62 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS------------------EECCTTSHHHHHHHHHHHHTTCTTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH------------------HHHHhcCHHHHHHHHHHHHHHhCCC
Confidence            4899999999999999999999999999999997532                  24688887776554322     357


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      +|+++||||....       .+.++....+|..+...+.+...+.+.+....   ...++++.
T Consensus        63 id~lv~~Ag~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  115 (257)
T d1fjha_          63 MDGLVLCAGLGPQ-------TKVLGNVVSVNYFGATELMDAFLPALKKGHQP---AAVVISSV  115 (257)
T ss_dssp             CSEEEECCCCCTT-------CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC---EEEEECCG
T ss_pred             CcEEEEcCCCCCc-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC---cceeeeec
Confidence            9999999986442       24467778999999999999999988776553   55555443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.54  E-value=1.4e-14  Score=110.96  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=88.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+||+||||||+|.||++++++|.++|++|++++|+........+....  ...+.++.+|++|++.+.++++.. .+|+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~--~~~i~~~~~Dl~d~~~l~~~~~~~-~~~~   82 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV--ADGMQSEIGDIRDQNKLLESIREF-QPEI   82 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT--TTTSEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc--ccCCeEEEeeccChHhhhhhhhhc-hhhh
Confidence            4789999999999999999999999999999999987644333332221  234788999999999999988876 6899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHc
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAAL  154 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  154 (179)
                      ++|.|+....    ..+.+..+..+++|+.++..+++++.
T Consensus        83 v~~~aa~~~~----~~~~~~~~~~~~~Nv~g~~n~l~~~~  118 (356)
T d1rkxa_          83 VFHMAAQPLV----RLSYSEPVETYSTNVMGTVYLLEAIR  118 (356)
T ss_dssp             EEECCSCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHH
T ss_pred             hhhhhccccc----cccccCCccccccccccchhhhhhhh
Confidence            9999985432    12334566789999999999988763

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.53  E-value=3.8e-14  Score=108.45  Aligned_cols=126  Identities=17%  Similarity=0.148  Sum_probs=93.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .+||+||||||+|.||++++++|.++|++|+++.|+.+..+.......... ......+..|+.+.+++.++++   ..|
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~~   85 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---GAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT---TCS
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc---cch
Confidence            469999999999999999999999999999999999876655544332222 3344557789999887766654   689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      .++|+++....    ..+   ....++.|+.|+.++++.+..      .+...+++++||.+.
T Consensus        86 ~v~~~a~~~~~----~~~---~~~~~~~nv~gt~~ll~~~~~------~~~v~~~i~~SS~~~  135 (342)
T d1y1pa1          86 GVAHIASVVSF----SNK---YDEVVTPAIGGTLNALRAAAA------TPSVKRFVLTSSTVS  135 (342)
T ss_dssp             EEEECCCCCSC----CSC---HHHHHHHHHHHHHHHHHHHHT------CTTCCEEEEECCGGG
T ss_pred             hhhhhcccccc----ccc---ccccccchhhhHHHHHHhhhc------cccccccccccccee
Confidence            99999985432    122   234578899999998887622      223458999999653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=110.58  Aligned_cols=129  Identities=18%  Similarity=0.133  Sum_probs=89.6

Q ss_pred             cEE-EEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-----HHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           38 RHV-FITGGSSGIGLALAHQAAKEGARVSILARSGEK-----LEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        38 k~v-lItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-----~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      |+| |||||+|.||++++++|.++|++|++++|....     .+.............+.++.+|++|.+.+.++++.. .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~   79 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-K   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH-C
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc-c
Confidence            445 999999999999999999999999999996431     111111111222346889999999999999999877 5


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++++++.++.....    ...+.....+++|+.|+.++++++...    ......++|++||.+
T Consensus        80 ~~~v~~~~a~~~~~----~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~~~~i~~SS~~  135 (347)
T d1t2aa_          80 PTEIYNLGAQSHVK----ISFDLAEYTADVDGVGTLRLLDAVKTC----GLINSVKFYQASTSE  135 (347)
T ss_dssp             CSEEEECCSCCCHH----HHHHSHHHHHHHHTHHHHHHHHHHHHT----TCTTTCEEEEEEEGG
T ss_pred             cceeeeeeeccccc----hhhccchhhhhhHHHHHHHHHHHHHHc----CCCCCcEEEEecchh
Confidence            77888887753321    223444566899999999998876332    222234899998864

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.53  E-value=5.4e-14  Score=106.63  Aligned_cols=110  Identities=17%  Similarity=0.236  Sum_probs=83.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGE-KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +||||||+|.||++++++|.++|++|+++|+-.. ........+.  ...++.++.+|+++.++++++++.. ++|++||
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~--~~~~~~~i~~Di~~~~~l~~~~~~~-~~d~Vih   78 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS--SLGNFEFVHGDIRNKNDVTRLITKY-MPDSCFH   78 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH--TTCCCEEEECCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh--ccCCcEEEEcccCCHHHHHHHHHhc-CCceEEe
Confidence            6899999999999999999999999999875322 1111112222  2346788999999999999999877 5899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcH
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALP  155 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  155 (179)
                      .|+.....    ...++....+++|+.|+.++++++..
T Consensus        79 ~aa~~~~~----~~~~~~~~~~~~Nv~gt~nll~~~~~  112 (338)
T d1orra_          79 LAGQVAMT----TSIDNPCMDFEINVGGTLNLLEAVRQ  112 (338)
T ss_dssp             CCCCCCHH----HHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccccc----ccccChHHHHHHHHHHHHHHHHhhhc
Confidence            99864421    12234567899999999999987633

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.2e-14  Score=99.09  Aligned_cols=112  Identities=20%  Similarity=0.210  Sum_probs=82.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ..|+|+||||+|++|++++++|.++|++|.++.|++++.+.       .....+..+.+|++|.+++.+.++   +.|++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~-------~~~~~~~~~~gD~~d~~~l~~al~---~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-------EGPRPAHVVVGDVLQAADVDKTVA---GQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-------SSCCCSEEEESCTTSHHHHHHHHT---TCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccc-------ccccccccccccccchhhHHHHhc---CCCEE
Confidence            57889999999999999999999999999999999876431       123446788999999999888876   57999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |+++|...+....           +++..++.+++++    +++.+-   .+++.+||..
T Consensus        72 i~~~g~~~~~~~~-----------~~~~~~~~~l~~a----a~~~~v---~r~i~~ss~~  113 (205)
T d1hdoa_          72 IVLLGTRNDLSPT-----------TVMSEGARNIVAA----MKAHGV---DKVVACTSAF  113 (205)
T ss_dssp             EECCCCTTCCSCC-----------CHHHHHHHHHHHH----HHHHTC---CEEEEECCGG
T ss_pred             EEEeccCCchhhh-----------hhhHHHHHHHHHH----HHhcCC---CeEEEEeeee
Confidence            9999864432211           2233344444443    444433   3899998864

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.7e-14  Score=107.04  Aligned_cols=127  Identities=19%  Similarity=0.241  Sum_probs=91.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh------hHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG------EKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~------~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      .|+||||||+|.||++++++|.++|++|+++|+..      .......+.+......++.++.+|++|.+.+++.+... 
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-   80 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY-   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccc-
Confidence            47899999999999999999999999999997521      11111122222223567889999999999999988765 


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      .+++++|.|+..+..    .+.++....++.|+.++..+++++..    .+   ..+++++||..
T Consensus        81 ~~~~i~h~Aa~~~~~----~~~~~p~~~~~~Nv~gt~~l~~~~~~----~~---v~~~i~~ss~~  134 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVG----ESVQKPLDYYRVNLTGTIQLLEIMKA----HG---VKNLVFSSSAT  134 (346)
T ss_dssp             CEEEEEECCSCCCHH----HHHHCHHHHHHHHHHHHHHHHHHHHH----TT---CCEEEEEEEGG
T ss_pred             ccccccccccccCcH----hhHhCHHHHHHhhhcccccccchhhh----cC---cccccccccce
Confidence            688899999865431    22334556789999999998887622    22   23788887764

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=1.2e-13  Score=105.04  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh-----HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE-----KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~-----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .|++|||||+|.||++++++|.++|++|++++|...     +.+.............+.++.+|+++.+.+.+.++.. +
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~-~   79 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI-K   79 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH-C
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh-c
Confidence            379999999999999999999999999999998532     1111111111122356788999999999999998876 6


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      +|+++|.|+.....    .+.+.....++.|..++..+.+++.....+...  ..+++..||.
T Consensus        80 ~D~Vih~Aa~~~~~----~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~ss~  136 (339)
T d1n7ha_          80 PDEVYNLAAQSHVA----VSFEIPDYTADVVATGALRLLEAVRSHTIDSGR--TVKYYQAGSS  136 (339)
T ss_dssp             CSEEEECCSCCCHH----HHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC--CCEEEEEEEG
T ss_pred             cchhhhcccccccc----ccccCccccccccccccchhhhhhhhccccccc--ceeeeecccc
Confidence            99999999864421    223455677899999999998887554433322  2245555554

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.47  E-value=4.3e-14  Score=109.10  Aligned_cols=130  Identities=15%  Similarity=0.177  Sum_probs=91.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeE-EEEecChhHHHHHHHHHHh-hcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARV-SILARSGEKLEEAKQSIQL-ATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v-~~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +||||||+|.||++++++|+++|+++ +++++......  .+.+.. ....++.++.+|++|.+.++++++.. .+|++|
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-~~d~Vi   78 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSDISESNRYNFEHADICDSAEITRIFEQY-QPDAVM   78 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-CCSEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc--HHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhC-CCCEEE
Confidence            68999999999999999999999985 55665322110  011111 12346888999999999999999877 699999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhcc--CCCCcEEEEecccC
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQ--NGGPASIALMSSQA  175 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~~~iv~iss~~  175 (179)
                      |.|+.....    .+.++....+++|+.|+..+++++........  .....+++++||.+
T Consensus        79 hlAa~~~~~----~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~  135 (361)
T d1kewa_          79 HLAAESHVD----RSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE  135 (361)
T ss_dssp             ECCSCCCHH----HHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG
T ss_pred             ECccccchh----hHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce
Confidence            999864321    12334456799999999999998866533210  00123899999865

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=3.3e-13  Score=101.86  Aligned_cols=124  Identities=18%  Similarity=0.108  Sum_probs=88.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH-HHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE-EAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      |+||||||+|.||++++++|.++|++|++++|...... ...+++.  ...++.++.+|++|.+.+.+.+... ..++++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-~~~~~~   77 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG--IEGDIQYEDGDMADACSVQRAVIKA-QPQEVY   77 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHH-CCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhc--ccCCcEEEEccccChHHhhhhhccc-cccccc
Confidence            78999999999999999999999999999998654211 1111221  1345888999999999999988876 467888


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEeccc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQ  174 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~  174 (179)
                      +.++......    ..+.....++.|+.|+.++++++...    +  ...++++.||.
T Consensus        78 ~~a~~~~~~~----~~~~~~~~~~~n~~g~~~~l~~~~~~----~--~~~~~i~~Ss~  125 (321)
T d1rpna_          78 NLAAQSFVGA----SWNQPVTTGVVDGLGVTHLLEAIRQF----S--PETRFYQASTS  125 (321)
T ss_dssp             ECCSCCCHHH----HTTSHHHHHHHHTHHHHHHHHHHHHH----C--TTSEEEEEEEG
T ss_pred             cccccccccc----cccchHHHHhhhhhchHHHHHHHHHh----C--CCcccccccch
Confidence            8876533211    11234567899999999998876332    2  12366666664

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.39  E-value=3.3e-12  Score=97.31  Aligned_cols=127  Identities=20%  Similarity=0.189  Sum_probs=90.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh----HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE----KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~----~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      ...|++|||||+|.||++++++|.++|++|+++||...    ..+.............+.++.+|..|....+....   
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~---   90 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA---   90 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT---
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc---
Confidence            46689999999999999999999999999999987332    22222222112223457889999999887655443   


Q ss_pred             CCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          111 PVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       111 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ..+.+++.++....    ..+.++....+++|+.|+..+++++..    .+   ..++|++||.+
T Consensus        91 ~~~~v~~~~a~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~---~~~~i~~SS~~  144 (341)
T d1sb8a_          91 GVDYVLHQAALGSV----PRSINDPITSNATNIDGFLNMLIAARD----AK---VQSFTYAASSS  144 (341)
T ss_dssp             TCSEEEECCSCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHH----TT---CSEEEEEEEGG
T ss_pred             cccccccccccccc----cccccCccchhheeehhHHHHHHHHHh----cC---CceEEEcccce
Confidence            57888887764332    123456677899999999999988732    22   23899999865

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.35  E-value=1.1e-11  Score=95.71  Aligned_cols=128  Identities=24%  Similarity=0.311  Sum_probs=90.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecC---------hhHHHHHHHHHHh-------hcCceEEEEEeeCCCH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAK-EGARVSILARS---------GEKLEEAKQSIQL-------ATGIEVATYSADVRDF   99 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~---------~~~~~~~~~~~~~-------~~~~~v~~~~~D~~~~   99 (179)
                      +++||||||+|.||++++++|++ .|++|+++|+-         .+..+.....+..       .....+.++.+|++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            45799999999999999999985 68999999841         1112222222221       1134577889999999


Q ss_pred             HHHHHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          100 DAVKTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       100 ~~v~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      +.+++++++..++|+++|.|+......    ..+.....+++|+.++..+++++..    .+   ...++.+||.+
T Consensus        82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~----~~~~~~~~~~~N~~~t~~~l~~~~~----~~---~~~~~~~~s~~  146 (383)
T d1gy8a_          82 DFLNGVFTRHGPIDAVVHMCAFLAVGE----SVRDPLKYYDNNVVGILRLLQAMLL----HK---CDKIIFSSSAA  146 (383)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHH----TT---CCEEEEEEEGG
T ss_pred             HHhhhhhhccceeehhhcccccccccc----cccccccccccccccccccchhhhc----cC---Ccccccccccc
Confidence            999999998888999999998654321    2233456788999999999887632    22   22666666543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=3.6e-12  Score=95.92  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .|+||||||+|.||++++++|.++|+.+++++++.+                     +|+.+.+.++++++.. .+|.++
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~---------------------~~~~~~~~~~~~~~~~-~~d~v~   59 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE---------------------LNLLDSRAVHDFFASE-RIDQVY   59 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT---------------------CCTTCHHHHHHHHHHH-CCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh---------------------ccccCHHHHHHHHhhc-CCCEEE
Confidence            478999999999999999999999999887765421                     5889999999988765 689999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      |.|+......   .........+++|+.++.++++++..    .+   ..++|++||.+.
T Consensus        60 ~~a~~~~~~~---~~~~~~~~~~~~Nv~gt~~ll~~a~~----~~---v~~~i~~SS~~v  109 (315)
T d1e6ua_          60 LAAAKVGGIV---ANNTYPADFIYQNMMIESNIIHAAHQ----ND---VNKLLFLGSSCI  109 (315)
T ss_dssp             ECCCCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHHH----TT---CCEEEEECCGGG
T ss_pred             Ecchhccccc---cchhhHHHHHHHHHHHHHHHHHHHHH----cC---CCEEEEECCceE
Confidence            9987644211   12333445688999999999887633    22   338999999764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.31  E-value=8e-12  Score=95.83  Aligned_cols=121  Identities=17%  Similarity=0.060  Sum_probs=88.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++++||||||+|.||++++++|.++|++|+++++......      .. .-....+...|+.+.+.+.+.++   .+|.+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~------~~-~~~~~~~~~~D~~~~~~~~~~~~---~~d~V   83 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM------TE-DMFCDEFHLVDLRVMENCLKVTE---GVDHV   83 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS------CG-GGTCSEEEECCTTSHHHHHHHHT---TCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch------hh-hcccCcEEEeechhHHHHHHHhh---cCCeE
Confidence            6778999999999999999999999999999987643210      00 11234567789999887776664   68999


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      ||.|+.......   ..+.....+.+|+.++..+++++..    .+   ..+++++||.+.
T Consensus        84 ih~a~~~~~~~~---~~~~~~~~~~~n~~gt~~ll~~~~~----~~---vk~~i~~SS~~~  134 (363)
T d2c5aa1          84 FNLAADMGGMGF---IQSNHSVIMYNNTMISFNMIEAARI----NG---IKRFFYASSACI  134 (363)
T ss_dssp             EECCCCCCCHHH---HTTCHHHHHHHHHHHHHHHHHHHHH----TT---CSEEEEEEEGGG
T ss_pred             eecccccccccc---cccccccccccccchhhHHHHhHHh----hC---cccccccccccc
Confidence            999986543221   1233456788999999998887633    22   338999998653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.7e-12  Score=96.97  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      +||||||+|.||++++++|+++| ++|+++++..+.....      ....++.++.+|+++.+++.+.+.+  .+|+++|
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~------~~~~~~~~i~~Di~~~~~~~~~~~~--~~d~Vih   73 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF------LNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLP   73 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG------TTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh------ccCCCeEEEECccCChHHHHHHHHh--CCCcccc
Confidence            59999999999999999999999 5899998865432211      1245688999999987776664433  4899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      +|+......    ..+.....++.|+.|+.++++++
T Consensus        74 ~a~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~~  105 (342)
T d2blla1          74 LVAIATPIE----YTRNPLRVFELDFEENLRIIRYC  105 (342)
T ss_dssp             CBCCCCHHH----HHHSHHHHHHHHTHHHHHHHHHH
T ss_pred             ccccccccc----cccCCcccccccccccccccccc
Confidence            999654321    22334567999999999999986

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.30  E-value=2.1e-12  Score=98.70  Aligned_cols=122  Identities=20%  Similarity=0.261  Sum_probs=83.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC--hhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARS--GEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~--~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .|+||||||+|.||++++++|.++|+.|.++.++  .....  ...+....+.++.++.+|++|.+.+.++++   ..+.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~--~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~---~~~~   76 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAILGDRVELVVGDIADAELVDKLAA---KADA   76 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGGCSSSEEEEECCTTCHHHHHHHHT---TCSE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc--HHHHHHhhcCCeEEEEccCCCHHHHHHHHh---hhhh
Confidence            5789999999999999999999999875444332  11100  001112235678899999999999988876   5778


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ++|.|+......    ..++....+++|+.|+.++++++...    +.    +++.+||.+
T Consensus        77 v~~~a~~~~~~~----~~~~~~~~~~~N~~g~~nll~~~~~~----~~----k~i~~ss~~  125 (346)
T d1oc2a_          77 IVHYAAESHNDN----SLNDPSPFIHTNFIGTYTLLEAARKY----DI----RFHHVSTDE  125 (346)
T ss_dssp             EEECCSCCCHHH----HHHCCHHHHHHHTHHHHHHHHHHHHH----TC----EEEEEEEGG
T ss_pred             hhhhhhcccccc----hhhCcccceeeehHhHHhhhhhhccc----cc----cccccccce
Confidence            889887644321    12334567899999999998876332    21    566666543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4e-12  Score=92.11  Aligned_cols=119  Identities=19%  Similarity=0.221  Sum_probs=85.0

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      .+.+|+||||||+|.+|++++++|.++|.  +|++++|++.....       .....+....+|+.+.+++   .+....
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~-------~~~~~i~~~~~D~~~~~~~---~~~~~~   80 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-------EAYKNVNQEVVDFEKLDDY---ASAFQG   80 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-------GGGGGCEEEECCGGGGGGG---GGGGSS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc-------cccceeeeeeecccccccc---cccccc
Confidence            36789999999999999999999999995  79999997643211       1123455666777765544   444457


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      .|+++|++|...       .........++|+.++..+.+.+..    .   +..+++.+||...
T Consensus        81 ~d~vi~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~----~---~v~~fi~~Ss~~~  131 (232)
T d2bkaa1          81 HDVGFCCLGTTR-------GKAGAEGFVRVDRDYVLKSAELAKA----G---GCKHFNLLSSKGA  131 (232)
T ss_dssp             CSEEEECCCCCH-------HHHHHHHHHHHHTHHHHHHHHHHHH----T---TCCEEEEECCTTC
T ss_pred             cccccccccccc-------cccchhhhhhhcccccceeeecccc----c---CccccccCCcccc
Confidence            899999998421       2234455678899999888887622    2   2348999998754

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.9e-11  Score=92.11  Aligned_cols=117  Identities=18%  Similarity=0.204  Sum_probs=76.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      .|+||||||+|.||++++++|.++|++|+++++......+....  ......+.....|..+     .++   .++|++|
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~--~~~~~~~d~~~~~~~~-----~~~---~~~d~Vi   70 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH--WIGHENFELINHDVVE-----PLY---IEVDQIY   70 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGG--GTTCTTEEEEECCTTS-----CCC---CCCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHH--hcCCCceEEEehHHHH-----HHH---cCCCEEE
Confidence            37899999999999999999999999999998633211100001  1112234444444422     222   3699999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      |.|+.......    .++....+++|+.++..+++++..    .+    .++|++||.+
T Consensus        71 hlAa~~~~~~~----~~~~~~~~~~Nv~g~~~ll~~~~~----~~----~k~I~~SS~~  117 (312)
T d2b69a1          71 HLASPASPPNY----MYNPIKTLKTNTIGTLNMLGLAKR----VG----ARLLLASTSE  117 (312)
T ss_dssp             ECCSCCSHHHH----TTCHHHHHHHHHHHHHHHHHHHHH----HT----CEEEEEEEGG
T ss_pred             ECcccCCchhH----HhCHHHHHHHHHHHHHHHHHHHHH----cC----CcEEEEEChh
Confidence            99986543211    123456789999999999987632    22    2789998853

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.17  E-value=5.9e-11  Score=85.05  Aligned_cols=107  Identities=22%  Similarity=0.271  Sum_probs=76.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCe--EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGAR--VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .++||||||+|.||++++++|+++|++  |+...|+++..+.        ....+..+.+|+++.+++.+.++   .+|.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~---~~d~   71 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK--------IGGEADVFIGDITDADSINPAFQ---GIDA   71 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH--------TTCCTTEEECCTTSHHHHHHHHT---TCSE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh--------ccCCcEEEEeeeccccccccccc---ccee
Confidence            579999999999999999999999976  5556777654332        12356778899999999888876   6899


Q ss_pred             EEecCCCCCCCC---------cccCCHHHHHHHHHhhhhHHHHHHHHHc
Q 030328          115 LVVNQGVFVPGE---------LEVQSLDEVRLMIDVNIIGSFHMIKAAL  154 (179)
Q Consensus       115 li~~ag~~~~~~---------~~~~~~~~~~~~~~~n~~~~~~l~~~~~  154 (179)
                      ++|+++......         ........+.....+|+.++..+.....
T Consensus        72 vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (252)
T d2q46a1          72 LVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK  120 (252)
T ss_dssp             EEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHH
T ss_pred             eEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccc
Confidence            999988654211         1111122344556788888888776553

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.17  E-value=3.4e-11  Score=89.24  Aligned_cols=105  Identities=18%  Similarity=0.180  Sum_probs=77.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +||||||+|.||++++++|.++|. ++.++++...                  +..|++|.+.++++++.. .+|++||.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~------------------~~~Dl~~~~~~~~~i~~~-~~D~Vih~   61 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE------------------FCGDFSNPKGVAETVRKL-RPDVIVNA   61 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS------------------SCCCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc------------------ccCcCCCHHHHHHHHHHc-CCCEEEEe
Confidence            599999999999999999999885 5555554321                  246999999999999877 58999999


Q ss_pred             CCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccC
Q 030328          119 QGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQA  175 (179)
Q Consensus       119 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~  175 (179)
                      ||.......    .+.....++.|..++..+.+++..        ...+++++||..
T Consensus        62 Aa~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~--------~~~~~~~~ss~~  106 (298)
T d1n2sa_          62 AAHTAVDKA----ESEPELAQLLNATSVEAIAKAANE--------TGAWVVHYSTDY  106 (298)
T ss_dssp             CCCCCHHHH----TTCHHHHHHHHTHHHHHHHHHHTT--------TTCEEEEEEEGG
T ss_pred             ccccccccc----ccCccccccccccccccchhhhhc--------cccccccccccc
Confidence            986543221    122345689999999998887622        123677777654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.09  E-value=3.9e-11  Score=90.57  Aligned_cols=122  Identities=16%  Similarity=0.198  Sum_probs=82.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEE------EEecChhHHHHHHHHHH-hhcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVS------ILARSGEKLEEAKQSIQ-LATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~------~~~r~~~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +||||||+|.||++++++|.++|++|.      ..|+.......  ..+. ......+.++..|.++........   ..
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~   76 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPVDADPRLRFVHGDIRDAGLLAREL---RG   76 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGGTTCTTEEEEECCTTCHHHHHHHT---TT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhhhhcCCCeEEEEeccccchhhhccc---cc
Confidence            689999999999999999999998654      34332111000  0011 112456888999999988766543   36


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      .|.++|.|+.....    ...+.....+++|+.++..+++++..    .+   ..++|++||.+.
T Consensus        77 ~d~vi~~a~~~~~~----~~~~~~~~~~~~N~~gt~~ll~~~~~----~~---~~~~I~~Ss~~~  130 (322)
T d1r6da_          77 VDAIVHFAAESHVD----RSIAGASVFTETNVQGTQTLLQCAVD----AG---VGRVVHVSTNQV  130 (322)
T ss_dssp             CCEEEECCSCCCHH----HHHHCCHHHHHHHTHHHHHHHHHHHH----TT---CCEEEEEEEGGG
T ss_pred             cceEEeeccccccc----ccccchHHHhhhhHHHHHHHHHHHHH----cC---CceEEEeeccee
Confidence            89999999764322    22334455689999999999988732    22   248999988753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.08  E-value=6.5e-10  Score=81.68  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=69.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      ++||||||+|.||++++++|.++|++|+.++|++                      .|++|.++++++++.. ++|++||
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~----------------------~D~~d~~~~~~~l~~~-~~d~vih   58 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD----------------------LDITNVLAVNKFFNEK-KPNVVIN   58 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT----------------------CCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh----------------------ccCCCHHHHHHHHHHc-CCCEEEe
Confidence            3599999999999999999999999999998853                      4899999999999876 6899999


Q ss_pred             cCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          118 NQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       118 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      +|+.....    ......+.....|......+....
T Consensus        59 ~a~~~~~~----~~~~~~~~~~~~n~~~~~~~~~~~   90 (281)
T d1vl0a_          59 CAAHTAVD----KCEEQYDLAYKINAIGPKNLAAAA   90 (281)
T ss_dssp             CCCCCCHH----HHHHCHHHHHHHHTHHHHHHHHHH
T ss_pred             eccccccc----cccccchhhccccccccccccccc
Confidence            98864421    122233455677777776666554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=98.89  E-value=3.6e-09  Score=77.88  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=61.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH--HHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE--EAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~--~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .|+||||||+|.||++++++|.++|++|++++|+.....  .....+.......+..+.+|+.+.....+.++   ..+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK---NVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH---TCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh---hcee
Confidence            578999999999999999999999999999999764321  11122222224456778899999988877776   5678


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      +++.++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            8887763

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.88  E-value=7.3e-09  Score=76.72  Aligned_cols=81  Identities=21%  Similarity=0.244  Sum_probs=60.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH-HHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE-AKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      ++||||||+|.||++++++|.++|++|++++|+...... ..+.+.......+..+.+|+++.+.+.+.++   ..+.++
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~---~~~~~~   80 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK---QVDVVI   80 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT---TCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc---Ccchhh
Confidence            459999999999999999999999999999997542111 1111222224557788999999998877776   567888


Q ss_pred             ecCCC
Q 030328          117 VNQGV  121 (179)
Q Consensus       117 ~~ag~  121 (179)
                      ++++.
T Consensus        81 ~~~~~   85 (312)
T d1qyda_          81 SALAG   85 (312)
T ss_dssp             ECCCC
T ss_pred             hhhhh
Confidence            87764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.84  E-value=2.6e-09  Score=75.71  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=72.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh-CCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA-GPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~-~~id  113 (179)
                      .|++|||||+|.||++++++|.++|.  +|++..|++..           ...+   +..+..|..++   .+.. ..+|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-----------~~~~---~~~~~~d~~~~---~~~~~~~~d   64 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-----------EHPR---LDNPVGPLAEL---LPQLDGSID   64 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-----------CCTT---EECCBSCHHHH---GGGCCSCCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-----------hccc---ccccccchhhh---hhccccchh
Confidence            48999999999999999999999997  56666665421           0112   23445554443   3332 4689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEecccCc
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMSSQAG  176 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~iss~~g  176 (179)
                      .+|+++|.....      ....+...+.|+.++..+.+.+    ++.+   ..+++++||..+
T Consensus        65 ~vi~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~a----~~~~---v~~~i~~Ss~~~  114 (212)
T d2a35a1          65 TAFCCLGTTIKE------AGSEEAFRAVDFDLPLAVGKRA----LEMG---ARHYLVVSALGA  114 (212)
T ss_dssp             EEEECCCCCHHH------HSSHHHHHHHHTHHHHHHHHHH----HHTT---CCEEEEECCTTC
T ss_pred             eeeeeeeeeccc------cccccccccchhhhhhhccccc----cccc---cccccccccccc
Confidence            999998854211      1112456788899998888875    2222   348999998754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.81  E-value=5.9e-08  Score=73.49  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH-HHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA-VKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-v~~~~~~~~~id~  114 (179)
                      +.|+|+||||+|.||++++++|.++|++|+++.|+..+...  ..+..  ...+..+.+|+.|..+ ++.+++   ..|.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~--~~~v~~~~gD~~d~~~~~~~a~~---~~~~   74 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA--IPNVTLFQGPLLNNVPLMDTLFE---GAHL   74 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT--STTEEEEESCCTTCHHHHHHHHT---TCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc--cCCCEEEEeeCCCcHHHHHHHhc---CCce
Confidence            46899999999999999999999999999999998765332  12221  2357788999988554 444544   5677


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      ++.+..
T Consensus        75 ~~~~~~   80 (350)
T d1xgka_          75 AFINTT   80 (350)
T ss_dssp             EEECCC
T ss_pred             EEeecc
Confidence            666553

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.57  E-value=8.8e-08  Score=66.16  Aligned_cols=46  Identities=26%  Similarity=0.356  Sum_probs=41.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA   84 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~   84 (179)
                      ++.|+||+|++|+++|+.|+++|++|++.+|+++++++..+++...
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~   47 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI   47 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            4678888899999999999999999999999999999888888654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.48  E-value=4.7e-07  Score=62.40  Aligned_cols=77  Identities=23%  Similarity=0.352  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id  113 (179)
                      +|.+++|+||+|++|.+.++.....|++|+.+++++++.+...+     .+.+..+   |..+.+..++..+.  .+.+|
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~-----~Ga~~vi---~~~~~~~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-----IGFDAAF---NYKTVNSLEEALKKASPDGYD  100 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----TTCSEEE---ETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh-----hhhhhhc---ccccccHHHHHHHHhhcCCCc
Confidence            68999999999999999999999999999999998876543322     2444333   33333333333332  24689


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      +++++.|
T Consensus       101 ~v~D~vG  107 (182)
T d1v3va2         101 CYFDNVG  107 (182)
T ss_dssp             EEEESSC
T ss_pred             eeEEecC
Confidence            9999887

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.6e-06  Score=59.72  Aligned_cols=84  Identities=24%  Similarity=0.356  Sum_probs=62.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHH---HHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQ---SIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .++++|+++|.|+ ||.|++++..|.+.|++ ++++.|+.++.++...   ++...  ........|..+.+++.+... 
T Consensus        14 ~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-   89 (182)
T d1vi2a1          14 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN--TDCVVTVTDLADQQAFAEALA-   89 (182)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH--SSCEEEEEETTCHHHHHHHHH-
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh--cCcceEeeecccccchhhhhc-
Confidence            3578999999999 79999999999999985 8889998776655443   33322  223345678888877766554 


Q ss_pred             hCCCcEEEecCCCC
Q 030328          109 AGPVDVLVVNQGVF  122 (179)
Q Consensus       109 ~~~id~li~~ag~~  122 (179)
                        ..|++||+....
T Consensus        90 --~~diiIN~Tp~G  101 (182)
T d1vi2a1          90 --SADILTNGTKVG  101 (182)
T ss_dssp             --TCSEEEECSSTT
T ss_pred             --ccceeccccCCc
Confidence              689999997543

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=3.5e-07  Score=67.16  Aligned_cols=99  Identities=17%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHH-HHHHH--hhCCCcEE
Q 030328           40 VFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAV-KTALD--EAGPVDVL  115 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v-~~~~~--~~~~id~l  115 (179)
                      ||||||+|.||++++++|.++|+ .|+++|+-.+..+. .. +.   ...    .+|..+.++. +....  ....++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~-~~-~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i   72 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VN-LV---DLN----IADYMDKEDFLIQIMAGEEFGDVEAI   72 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG-HH-HH---TSC----CSEEEEHHHHHHHHHTTCCCSSCCEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh-hc-cc---ccc----hhhhccchHHHHHHhhhhcccchhhh
Confidence            79999999999999999999996 58888743321111 00 11   111    1233333333 33332  23567888


Q ss_pred             EecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHH
Q 030328          116 VVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAA  153 (179)
Q Consensus       116 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  153 (179)
                      +|.|+......   .+   .+...+.|+.++..+.+++
T Consensus        73 ~~~aa~~~~~~---~~---~~~~~~~~~~~~~~~l~~~  104 (307)
T d1eq2a_          73 FHEGACSSTTE---WD---GKYMMDNNYQYSKELLHYC  104 (307)
T ss_dssp             EECCSCCCTTC---CC---HHHHHHHTHHHHHHHHHHH
T ss_pred             hhhcccccccc---cc---ccccccccccccccccccc
Confidence            88887543221   12   2335677777887777765

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=2.8e-06  Score=58.07  Aligned_cols=78  Identities=21%  Similarity=0.238  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id  113 (179)
                      .+++++|+||+|++|...++.....|++|+++++++++.+...+ +    |.+.   ..|.++++-.+++.+.  ...+|
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~-l----Ga~~---vi~~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A----GAWQ---VINYREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H----TCSE---EEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh-c----CCeE---EEECCCCCHHHHHHHHhCCCCeE
Confidence            58899999999999999999999999999999999887654432 2    4432   2466665444454433  24688


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      +++.+.|.
T Consensus       100 ~v~d~~g~  107 (179)
T d1qora2         100 VVYDSVGR  107 (179)
T ss_dssp             EEEECSCG
T ss_pred             EEEeCccH
Confidence            88888873

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.37  E-value=1.5e-06  Score=59.12  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=54.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+|+++|.|| |.+|+.+|+.|+++|++|++++|+.+++++..+..     ........+..+....+..+.   ..|.+
T Consensus         1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~-----~~~~~~~~~~~~~~~~~~~i~---~~~~~   71 (182)
T d1e5qa1           1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV-----QHSTPISLDVNDDAALDAEVA---KHDLV   71 (182)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC-----TTEEEEECCTTCHHHHHHHHT---TSSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc-----cccccccccccchhhhHhhhh---cccee
Confidence            3689999988 99999999999999999999999999887665433     223344456666655555554   45655


Q ss_pred             EecC
Q 030328          116 VVNQ  119 (179)
Q Consensus       116 i~~a  119 (179)
                      +...
T Consensus        72 i~~~   75 (182)
T d1e5qa1          72 ISLI   75 (182)
T ss_dssp             EECS
T ss_pred             Eeec
Confidence            5443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.9e-06  Score=58.75  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      ++.+++|+||+|++|...++.....|++|+++++++++.+... +    .|.+.   ..|.++.+-.+++.+..  ..+|
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~----~Ga~~---vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-Q----NGAHE---VFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-H----TTCSE---EEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccccccc-c----cCccc---ccccccccHHHHhhhhhccCCce
Confidence            6889999999999999999999999999999998876554332 2    24432   23666655555554442  3589


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      +++.+.|
T Consensus       100 ~v~d~~g  106 (174)
T d1yb5a2         100 IIIEMLA  106 (174)
T ss_dssp             EEEESCH
T ss_pred             EEeeccc
Confidence            9998876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=5.1e-06  Score=56.89  Aligned_cols=77  Identities=29%  Similarity=0.345  Sum_probs=56.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id  113 (179)
                      ++.++||+||+|++|...++.+...|++++++++++++.+...     ..+.+.   ..|..+++-.+++.+..  .++|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~-----~~Ga~~---vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-----RLGVEY---VGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-----TTCCSE---EEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccc-----cccccc---cccCCccCHHHHHHHHhCCCCEE
Confidence            5889999999999999999999999999999999876544322     234442   23555554445554432  3689


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      +++.+.|
T Consensus        97 ~v~d~~g  103 (183)
T d1pqwa_          97 VVLNSLA  103 (183)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999887

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.25  E-value=4e-06  Score=56.45  Aligned_cols=74  Identities=24%  Similarity=0.386  Sum_probs=55.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++++++++|.|+ |.+|+.+++.|.++|++ +.++.|+.++.++..+++    +..+    .++   +++.+.+.   ..
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----~~~~----~~~---~~~~~~l~---~~   85 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----GGEA----VRF---DELVDHLA---RS   85 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----TCEE----CCG---GGHHHHHH---TC
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----hccc----ccc---hhHHHHhc---cC
Confidence            478999999999 99999999999999985 889999988877666654    2221    222   33444444   68


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |++|++.+..
T Consensus        86 Divi~atss~   95 (159)
T d1gpja2          86 DVVVSATAAP   95 (159)
T ss_dssp             SEEEECCSSS
T ss_pred             CEEEEecCCC
Confidence            9999998753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.17  E-value=2.3e-05  Score=52.91  Aligned_cols=79  Identities=25%  Similarity=0.275  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEE-eeCCCHHHHHHHHHh-h-CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS-ADVRDFDAVKTALDE-A-GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~-~D~~~~~~v~~~~~~-~-~~i  112 (179)
                      .+.+++|+|+ |++|...++.+...|++|+++++++++.+...+     .+.+..... ..-.+.+++.+.++. . +.+
T Consensus        26 ~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-----~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          26 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-----CGADVTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----TTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCEEEEEcc-cccchhhHhhHhhhcccccccchHHHHHHHHHH-----cCCcEEEeccccccccchhhhhhhcccccCC
Confidence            5778999984 899999999999999999999999887654332     244333222 122334444444433 2 468


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |++|.++|
T Consensus       100 D~vid~~g  107 (170)
T d1e3ja2         100 NVTIDCSG  107 (170)
T ss_dssp             SEEEECSC
T ss_pred             ceeeecCC
Confidence            99999998

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=3.1e-06  Score=57.66  Aligned_cols=74  Identities=24%  Similarity=0.283  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++++++|+||+|++|...++.+...|++|+.+++++++.+...+     .|.+..   .|..+.  . +..+..+++|++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~-----lGa~~~---i~~~~~--~-~~~~~~~g~D~v   95 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-----LGAEEA---ATYAEV--P-ERAKAWGGLDLV   95 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-----TTCSEE---EEGGGH--H-HHHHHTTSEEEE
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc-----ccccee---eehhhh--h-hhhhcccccccc
Confidence            78999999999999999999999999999999998876553322     244322   244332  2 223344568999


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      +++.|
T Consensus        96 ~d~~G  100 (171)
T d1iz0a2          96 LEVRG  100 (171)
T ss_dssp             EECSC
T ss_pred             ccccc
Confidence            98776

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=6.3e-06  Score=56.03  Aligned_cols=76  Identities=12%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..++||+++|.|| ||.+++++..|.+.|++++++.|+.++.++..+.+....  .+..  .+..+.        ...+.
T Consensus        14 ~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~--~~~~~~--------~~~~~   80 (170)
T d1nyta1          14 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA--LSMDEL--------EGHEF   80 (170)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE--CCSGGG--------TTCCC
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--cccc--cccccc--------ccccc
Confidence            3568999999999 899999999999999999999999998888777665331  2222  222111        12368


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++||+...
T Consensus        81 dliIN~Tp~   89 (170)
T d1nyta1          81 DLIINATSS   89 (170)
T ss_dssp             SEEEECCSC
T ss_pred             ceeeccccc
Confidence            999998644

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=3.1e-06  Score=49.88  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=38.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ++++++|+||+||+|....+.+...|++|+.+.+++++.+..
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            688999999999999999999899999999999998876644

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.14  E-value=2.3e-06  Score=58.66  Aligned_cols=77  Identities=17%  Similarity=0.172  Sum_probs=52.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~i  112 (179)
                      .++.++||+||+||+|....+.....|++|+.+.+++++.+...+     .+.+...   |-++.  .++..+.  .+++
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~-----lGa~~vi---~~~~~--~~~~~~~~~~~gv   99 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-----LGAKEVL---AREDV--MAERIRPLDKQRW   99 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-----TTCSEEE---ECC-----------CCSCCE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh-----cccceee---ecchh--HHHHHHHhhccCc
Confidence            368899999999999999999999999999999998887654432     2444322   32221  1222222  3579


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |+++++.|.
T Consensus       100 D~vid~vgg  108 (176)
T d1xa0a2         100 AAAVDPVGG  108 (176)
T ss_dssp             EEEEECSTT
T ss_pred             CEEEEcCCc
Confidence            999999883

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.13  E-value=4.8e-06  Score=54.19  Aligned_cols=73  Identities=14%  Similarity=0.269  Sum_probs=55.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      .+++|.|+ |.+|+.+++.|.++|++|++++++++..++..++    .  ....+..|.++++.++++  .....|.++-
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----~--~~~vi~Gd~~~~~~l~~~--~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----I--DALVINGDCTKIKTLEDA--GIEDADMYIA   71 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----C--SSEEEESCTTSHHHHHHT--TTTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----h--hhhhccCcccchhhhhhc--Chhhhhhhcc
Confidence            36899998 9999999999999999999999999877765432    2  245678999998876654  1235676665


Q ss_pred             cC
Q 030328          118 NQ  119 (179)
Q Consensus       118 ~a  119 (179)
                      ..
T Consensus        72 ~t   73 (132)
T d1lssa_          72 VT   73 (132)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.13  E-value=1.3e-05  Score=54.51  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ...++|+++|.|+ ||.+++++..|.+.+.+++++.|+.++.+...+.+...  ..+.....|-.          .....
T Consensus        14 ~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~--~~~~~~~~~~~----------~~~~~   80 (171)
T d1p77a1          14 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY--GNIQAVSMDSI----------PLQTY   80 (171)
T ss_dssp             CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG--SCEEEEEGGGC----------CCSCC
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc--cccchhhhccc----------ccccc
Confidence            4568999999998 88899999999998888999999999988887776532  23333332211          13478


Q ss_pred             cEEEecCCCCCCCC
Q 030328          113 DVLVVNQGVFVPGE  126 (179)
Q Consensus       113 d~li~~ag~~~~~~  126 (179)
                      |++||+........
T Consensus        81 diiIN~tp~g~~~~   94 (171)
T d1p77a1          81 DLVINATSAGLSGG   94 (171)
T ss_dssp             SEEEECCCC-----
T ss_pred             ceeeeccccccccc
Confidence            99999976554433

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=9.5e-06  Score=55.58  Aligned_cols=79  Identities=23%  Similarity=0.314  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHH-HHHHHHhh--CC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDA-VKTALDEA--GP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-v~~~~~~~--~~  111 (179)
                      .|.+++|+|| |++|...++.+...|+ +|+++++++++.+.. ++    .|.+......+ .+..+ .+++.+..  ..
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~----lGa~~vi~~~~-~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EE----IGADLTLNRRE-TSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HH----TTCSEEEETTT-SCHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-cc----ccceEEEeccc-cchHHHHHHHHHhhCCCC
Confidence            6899999997 8999999999999998 699999998876533 22    24432221111 22322 23333322  35


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      +|++|.++|.
T Consensus       101 ~Dvvid~vG~  110 (182)
T d1vj0a2         101 ADFILEATGD  110 (182)
T ss_dssp             EEEEEECSSC
T ss_pred             ceEEeecCCc
Confidence            8999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=9.9e-05  Score=49.73  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-h-CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-A-GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~-~~i  112 (179)
                      .+.+++|.|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+.. +..+-.+..+..+.++. . ..+
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~----~Ga~~~-~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-E----IGADLV-LQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-H----TTCSEE-EECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-H----hCCccc-ccccccccccccccccccCCCCc
Confidence            5778999987 9999999999999999 6999999988766432 2    344432 23333455555444433 2 468


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |++|.++|
T Consensus        99 Dvvid~~G  106 (171)
T d1pl8a2          99 EVTIECTG  106 (171)
T ss_dssp             SEEEECSC
T ss_pred             eEEEeccC
Confidence            99999988

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.97  E-value=1.6e-05  Score=54.20  Aligned_cols=77  Identities=19%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+.+++|.|+ |++|...++.+...|+ +|+++++++++.+... +    .|.+.   ..|..+.+..+++.+..  ..+
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~----lGa~~---~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-F----YGATD---ILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-H----HTCSE---EECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-h----hCccc---cccccchhHHHHHHHHhhccCc
Confidence            5888999987 8999999999999998 5999999987655432 2    24432   23444433334444432  358


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++|.++|.
T Consensus        98 D~vid~~g~  106 (174)
T d1jqba2          98 DRVIMAGGG  106 (174)
T ss_dssp             EEEEECSSC
T ss_pred             ceEEEccCC
Confidence            999999984

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.93  E-value=0.00019  Score=47.24  Aligned_cols=77  Identities=17%  Similarity=0.302  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHh--hcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQL--ATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +++++.|.|+ |.+|..+|..|+.+|  .+++++|++++..+....++..  ...........|.          +....
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~----------~~~~~   72 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY----------SDCKD   72 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG----------GGGTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH----------HHhcc
Confidence            4568888896 999999999999988  4699999998766555544432  1122223333332          23446


Q ss_pred             CcEEEecCCCCC
Q 030328          112 VDVLVVNQGVFV  123 (179)
Q Consensus       112 id~li~~ag~~~  123 (179)
                      .|++|..+|...
T Consensus        73 adivvitag~~~   84 (146)
T d1ez4a1          73 ADLVVITAGAPQ   84 (146)
T ss_dssp             CSEEEECCCC--
T ss_pred             ccEEEEeccccc
Confidence            899999998644

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.5e-05  Score=54.87  Aligned_cols=78  Identities=15%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeE-EEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARV-SILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v-~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~id  113 (179)
                      ++++|||+||+|++|...++.....|+++ +.+++++++..+...++    +.+.   ..|..+++..+.+.+. ...+|
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~----gad~---vi~~~~~~~~~~~~~~~~~GvD  102 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL----GFDA---AVNYKTGNVAEQLREACPGGVD  102 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS----CCSE---EEETTSSCHHHHHHHHCTTCEE
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc----cceE---EeeccchhHHHHHHHHhccCce
Confidence            45899999999999999999998899874 45566666554443333    4442   2354443332222221 23589


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      +++.+.|
T Consensus       103 vv~D~vG  109 (187)
T d1vj1a2         103 VYFDNVG  109 (187)
T ss_dssp             EEEESSC
T ss_pred             EEEecCC
Confidence            9988887

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.90  E-value=4.3e-05  Score=51.51  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+.+++|.|++|++|...++.+...|+ +|+++++++++.+...+     .|.+.   ..|.++.+..++..+..  +.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-----~Ga~~---~i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-----AGADY---VINASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-----HTCSE---EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-----cCCce---eeccCCcCHHHHHHHHhhcccc
Confidence            678999999999999999999999995 78899998876554322     24432   23444444455555442  458


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |+++.++|.
T Consensus        99 d~vid~~g~  107 (170)
T d1jvba2          99 DAVIDLNNS  107 (170)
T ss_dssp             EEEEESCCC
T ss_pred             hhhhccccc
Confidence            999998873

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.90  E-value=8.9e-05  Score=49.68  Aligned_cols=76  Identities=24%  Similarity=0.322  Sum_probs=50.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.+++|.|+ |++|...++.+...|++|+++++++++.+...+     .|.+..   .|.++.+..+++.+.....+..
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~-----~Ga~~~---i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARK-----LGASLT---VNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----TTCSEE---EETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhc-----cCcccc---ccccchhHHHHHHHhhcCCccc
Confidence            5889999887 999999999999999999999999887654322     244322   2444444444444433345554


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      |.+++
T Consensus        98 i~~~~  102 (166)
T d1llua2          98 LVTAV  102 (166)
T ss_dssp             EECCS
T ss_pred             ccccc
Confidence            54444

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.78  E-value=4.1e-05  Score=52.67  Aligned_cols=84  Identities=18%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             CCcEEEE-EcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEE--eeCCC-HHHHHHHHHh-hC
Q 030328           36 KDRHVFI-TGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYS--ADVRD-FDAVKTALDE-AG  110 (179)
Q Consensus        36 ~~k~vlI-tGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~--~D~~~-~~~v~~~~~~-~~  110 (179)
                      .|.+++| +||+|++|.+..+.....|++|+.+.++.+..++..+.+... |.+.....  .|..+ .+.+.+..+. .+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l-Gad~vi~~~~~~~~~~~~~v~~~~~~~g~  106 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL-GATQVITEDQNNSREFGPTIKEWIKQSGG  106 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH-TCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc-cccEEEeccccchhHHHHHHHHHHhhccC
Confidence            4555555 799999999999999999999999988877666665555433 44322211  11111 1123333332 34


Q ss_pred             CCcEEEecCC
Q 030328          111 PVDVLVVNQG  120 (179)
Q Consensus       111 ~id~li~~ag  120 (179)
                      ++|+++++.|
T Consensus       107 ~vdvv~D~vg  116 (189)
T d1gu7a2         107 EAKLALNCVG  116 (189)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            6899988876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.77  E-value=9.6e-05  Score=50.22  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~~~id  113 (179)
                      .+.+++|.|+ ||+|...++.+...|+ +|+++|+++++++...+     .|.+..+..-|-.+ .+.+.+... .+.+|
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~-----~GA~~~in~~~~~~~~~~~~~~~~-g~G~d  101 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-----VGATECISPKDSTKPISEVLSEMT-GNNVG  101 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-----HTCSEEECGGGCSSCHHHHHHHHH-TSCCC
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh-----cCCcEEECccccchHHHHHHHHhc-cccce
Confidence            6889999987 8999999999999995 69999999998764332     34443332223222 222222222 24689


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      ++|.+.|
T Consensus       102 ~vi~~~g  108 (176)
T d1d1ta2         102 YTFEVIG  108 (176)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999887

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.77  E-value=9.7e-05  Score=50.01  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~i  112 (179)
                      .|.+++|.|+ ||+|...++++...|+ +|+++++++++.+...+     .+........|-.  +.+++..+.  .+.+
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~-----~Ga~~~i~~~~~~--~~~~~~~~~~~~~G~   99 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-----VGATECVNPQDYK--KPIQEVLTEMSNGGV   99 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-----TTCSEEECGGGCS--SCHHHHHHHHTTSCB
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH-----hCCeeEEecCCch--hHHHHHHHHHhcCCC
Confidence            6889999999 7899999999999985 68899999887664322     2333222222222  223333322  2468


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++|.+.|.
T Consensus       100 D~vid~~G~  108 (176)
T d2jhfa2         100 DFSFEVIGR  108 (176)
T ss_dssp             SEEEECSCC
T ss_pred             CEEEecCCc
Confidence            999998883

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=0.00012  Score=49.13  Aligned_cols=77  Identities=22%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .|.+++|.|+ |++|...++.+...|++|+++++++++.+... +    .|.+...   |..+..+..+  +..+.+|.+
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~----lGa~~~i---~~~~~~~~~~--~~~~~~d~v   95 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-K----MGADHYI---ATLEEGDWGE--KYFDTFDLI   95 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-H----HTCSEEE---EGGGTSCHHH--HSCSCEEEE
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh-c----cCCcEEe---eccchHHHHH--hhhcccceE
Confidence            6889999997 89999999988899999999999988766432 2    2443222   2222211111  122468988


Q ss_pred             EecCCCCC
Q 030328          116 VVNQGVFV  123 (179)
Q Consensus       116 i~~ag~~~  123 (179)
                      +.+.+...
T Consensus        96 i~~~~~~~  103 (168)
T d1piwa2          96 VVCASSLT  103 (168)
T ss_dssp             EECCSCST
T ss_pred             EEEecCCc
Confidence            88876543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.74  E-value=1.9e-05  Score=51.14  Aligned_cols=73  Identities=12%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      |+++|.|+ |.+|+.+|++|.++|.+|++++.+++..++..+     .+.  ..+..|.++++.+++.  .....|.+|-
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-----~~~--~~~~gd~~~~~~l~~a--~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----YAT--HAVIANATEENELLSL--GIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-----TCS--EEEECCTTCTTHHHHH--TGGGCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-----hCC--cceeeecccchhhhcc--CCccccEEEE
Confidence            56778888 899999999999999999999999987665421     233  4567899998777654  1225677666


Q ss_pred             cCC
Q 030328          118 NQG  120 (179)
Q Consensus       118 ~ag  120 (179)
                      ..+
T Consensus        71 ~~~   73 (134)
T d2hmva1          71 AIG   73 (134)
T ss_dssp             CCC
T ss_pred             EcC
Confidence            554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.72  E-value=0.0003  Score=47.62  Aligned_cols=79  Identities=24%  Similarity=0.290  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeC-CCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADV-RDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~-~~~~~v~~~~~~~~~id  113 (179)
                      .|.+++|.|+ |++|...++.+...|++ |+++++++++.+.. +    +.|.......... .....+.+... .+.+|
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~----~~Ga~~~i~~~~~~~~~~~~~~~~~-~~G~d  100 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-K----ALGATDCLNPRELDKPVQDVITELT-AGGVD  100 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-H----HTTCSEEECGGGCSSCHHHHHHHHH-TSCBS
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHH-H----HhCCCcccCCccchhhhhhhHhhhh-cCCCc
Confidence            6889999986 99999999999999985 77889988875432 2    2344322211111 11222222222 34789


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|.++|.
T Consensus       101 ~vie~~G~  108 (174)
T d1e3ia2         101 YSLDCAGT  108 (174)
T ss_dssp             EEEESSCC
T ss_pred             EEEEeccc
Confidence            99999883

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.00014  Score=48.90  Aligned_cols=74  Identities=22%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .|.+++|.|+ |++|...++.+...|++++++++++++.+.. +++    |.+.   ..|..+.+...   +..+++|++
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~~l----Gad~---~i~~~~~~~~~---~~~~~~D~v   97 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KAL----GADE---VVNSRNADEMA---AHLKSFDFI   97 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHH----TCSE---EEETTCHHHHH---TTTTCEEEE
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHH-hcc----CCcE---EEECchhhHHH---HhcCCCcee
Confidence            6889999987 8999999999999999999999988865432 233    4442   24656554332   223478999


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      |.++|.
T Consensus        98 id~~g~  103 (168)
T d1uufa2          98 LNTVAA  103 (168)
T ss_dssp             EECCSS
T ss_pred             eeeeec
Confidence            999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.70  E-value=0.00021  Score=48.25  Aligned_cols=77  Identities=21%  Similarity=0.256  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeE-EEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARV-SILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v-~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~id  113 (179)
                      .+.+++|.|+ |++|...++.+...|+++ +++++++++.+... ++    |... .  .|..+.+..+++.+. .+.+|
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~----Ga~~-~--i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL----GATH-V--INSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH----TCSE-E--EETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-Hc----CCeE-E--EeCCCcCHHHHHHHHcCCCCc
Confidence            6889999998 899999999999999875 56677776655432 22    3322 2  344443333333332 24689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|.+.|.
T Consensus        99 ~vid~~G~  106 (174)
T d1f8fa2          99 FALESTGS  106 (174)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcCCc
Confidence            99999883

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.66  E-value=2.5e-05  Score=52.81  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .++++||+||+||+|...++.....|++|+.+.+++++.+..
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~   64 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL   64 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence            567899999999999999999999999999999998876544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.61  E-value=0.00022  Score=48.28  Aligned_cols=77  Identities=22%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHH-HHHHHHHh--hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFD-AVKTALDE--AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~v~~~~~~--~~~  111 (179)
                      .+.+++|.|+ |++|...++.+...|+ +|+++|+++++++...+     .|.+..+   |.++.+ .+++..+.  .+.
T Consensus        27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-----lGa~~~i---~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-----LGATECL---NPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-----TTCSEEE---CGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-----cCCcEEE---cCCCchhHHHHHHHHhcCCC
Confidence            6889999997 8999999999999997 58899999887764432     3443222   322211 12222221  246


Q ss_pred             CcEEEecCCC
Q 030328          112 VDVLVVNQGV  121 (179)
Q Consensus       112 id~li~~ag~  121 (179)
                      .|++|.++|.
T Consensus        98 ~d~vid~~g~  107 (174)
T d1p0fa2          98 VDYAVECAGR  107 (174)
T ss_dssp             BSEEEECSCC
T ss_pred             CcEEEEcCCC
Confidence            8888888773

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=4.7e-05  Score=51.96  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=37.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .++++||+||+||+|...++.....|++|+.+++++++.+..
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            556899999999999999999999999999999998876544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.56  E-value=0.00044  Score=47.61  Aligned_cols=78  Identities=27%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~i  112 (179)
                      .|.+++|.|+ |++|...++.....|+ +|+++++++++++..     ...|.+..   .|-.+.+-.+++.+.  ...+
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a-----~~~Ga~~~---~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-----KAQGFEIA---DLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-----HHTTCEEE---ETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhh-----hhccccEE---EeCCCcCHHHHHHHHhCCCCc
Confidence            6889999987 8999998888888887 688899988776533     22355432   232332222233222  2368


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |++|.+.|..
T Consensus        96 D~vid~vG~~  105 (195)
T d1kola2          96 DCAVDAVGFE  105 (195)
T ss_dssp             EEEEECCCTT
T ss_pred             EEEEECcccc
Confidence            9999998843

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=0.0038  Score=40.80  Aligned_cols=78  Identities=14%  Similarity=0.240  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      .++++.|.|| |.+|.++|..++.+|.  +++++|++++..+....++...   ....+.....|.          +...
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~----------~~l~   73 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----------DDCR   73 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----------GGTT
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH----------HHhc
Confidence            4678899997 9999999999999884  5999999988766555555421   122233323322          2344


Q ss_pred             CCcEEEecCCCCCC
Q 030328          111 PVDVLVVNQGVFVP  124 (179)
Q Consensus       111 ~id~li~~ag~~~~  124 (179)
                      .-|++|.++|....
T Consensus        74 daDvvvitag~~~~   87 (148)
T d1ldna1          74 DADLVVICAGANQK   87 (148)
T ss_dssp             TCSEEEECCSCCCC
T ss_pred             cceeEEEecccccc
Confidence            68999999997543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.52  E-value=0.00082  Score=44.65  Aligned_cols=41  Identities=32%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      .+.+++|.|+ |++|...++.+...|++|+++++++++.+..
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            5789999876 8999999999999999999999998876644

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.50  E-value=0.00023  Score=44.60  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=35.5

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      -.+++||+++|.|+ |.+|..-++.|.+.|++|++++....
T Consensus         7 ~l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1           7 FCQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             EECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             EEEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            34689999999999 78999999999999999999887654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.0003  Score=49.61  Aligned_cols=78  Identities=23%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             CcCCcEEEEEcC----------------CCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC
Q 030328           34 PIKDRHVFITGG----------------SSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR   97 (179)
Q Consensus        34 ~~~~k~vlItGa----------------~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~   97 (179)
                      +++|+++|||+|                ||.+|.++|+++..+|++|.++......          .....+..+  .+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~----------~~p~~~~~~--~~~   70 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL----------PTPPFVKRV--DVM   70 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC----------CCCTTEEEE--ECC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc----------Ccccccccc--eeh
Confidence            467888888864                6889999999999999999988775431          011223333  344


Q ss_pred             CHHHHHH-HHHhhCCCcEEEecCCCCC
Q 030328           98 DFDAVKT-ALDEAGPVDVLVVNQGVFV  123 (179)
Q Consensus        98 ~~~~v~~-~~~~~~~id~li~~ag~~~  123 (179)
                      +.++..+ +.+.....|++|.+|.+..
T Consensus        71 t~~~m~~~~~~~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          71 TALEMEAAVNASVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             SHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             hhHHHHHHHHhhhccceeEeeeechhh
Confidence            5555544 4445567899999998754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.49  E-value=0.00029  Score=46.40  Aligned_cols=42  Identities=26%  Similarity=0.325  Sum_probs=37.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKL   74 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~   74 (179)
                      ++..-|++.|.|+.|.+|..+|+.|.++|++|.+.|++....
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~   46 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV   46 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence            345678999999999999999999999999999999987643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.43  E-value=0.00067  Score=45.51  Aligned_cols=76  Identities=26%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      .+.+++|.|+ |++|...++.+...|+. |+++++++++.+...+     .+.+. .  .|.++ +.+++..+..  ..+
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-----~ga~~-~--i~~~~-~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-----LGADH-V--VDARR-DPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-----TTCSE-E--EETTS-CHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-----cccce-e--ecCcc-cHHHHHHHhhCCCCc
Confidence            5789999987 99999999999888865 6778888776553332     23332 2  23332 3445555442  358


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      |++|.++|.
T Consensus       102 d~vid~~g~  110 (172)
T d1h2ba2         102 NVAMDFVGS  110 (172)
T ss_dssp             EEEEESSCC
T ss_pred             eEEEEecCc
Confidence            999999983

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.41  E-value=0.00066  Score=45.56  Aligned_cols=79  Identities=23%  Similarity=0.269  Sum_probs=50.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~~~~id  113 (179)
                      .+.+++|.|+ |++|...+..++..|+ +|+++++++++++...+     .|.+......+-.+ .+.+.+... .+.+|
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-----~GAd~~in~~~~~~~~~~~~~~~~-~~G~d  100 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-----FGATDFVNPNDHSEPISQVLSKMT-NGGVD  100 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-----TTCCEEECGGGCSSCHHHHHHHHH-TSCBS
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-----cCCcEEEcCCCcchhHHHHHHhhc-cCCcc
Confidence            6889999987 7788888888888886 48889999887664332     34443221122111 222222222 24689


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      +++.+.|.
T Consensus       101 ~vid~~G~  108 (175)
T d1cdoa2         101 FSLECVGN  108 (175)
T ss_dssp             EEEECSCC
T ss_pred             eeeeecCC
Confidence            99999883

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.40  E-value=0.0011  Score=44.77  Aligned_cols=106  Identities=12%  Similarity=0.024  Sum_probs=57.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGA-------RVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      .-++.||||+|.||.+++.+|+..+.       .+.+.|.++.  .++....++.............- ++.   .   +
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~-~~~---~---~   96 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-IDP---Y---E   96 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SCH---H---H
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc-ccc---h---h
Confidence            34799999999999999999997532       3445555442  23333333322111112221111 221   2   2


Q ss_pred             hhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHh
Q 030328          108 EAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK  159 (179)
Q Consensus       108 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~  159 (179)
                      .....|++|..+|....+   .++.++   .++.|+.    +.+...+.+.+
T Consensus        97 ~~~~aDvVvi~ag~~rkp---g~tR~D---ll~~N~~----I~k~~~~~i~~  138 (175)
T d7mdha1          97 VFEDVDWALLIGAKPRGP---GMERAA---LLDINGQ----IFADQGKALNA  138 (175)
T ss_dssp             HTTTCSEEEECCCCCCCT---TCCHHH---HHHHHHH----HHHHHHHHHHH
T ss_pred             hccCCceEEEeeccCCCC---CCcHHH---HHHHHHH----HHHHHHHHHHh
Confidence            334789999999875432   234444   4555643    34445555554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=7.8e-05  Score=45.22  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=34.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      +++||+++|.|. |..|.++|+.|.++|++|++.|.+..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            468999999999 77899999999999999999998654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.0011  Score=43.61  Aligned_cols=76  Identities=16%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVN  118 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~  118 (179)
                      +++|.|. |.+|..++++|.++|.++++++.+++...+..++..   ...+.++.+|.++++.+++.-  ..+.+.+|-.
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~---~~~~~vi~Gd~~d~~~L~~a~--i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAG--IDRCRAILAL   78 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHT--TTTCSEEEEC
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh---cCCcEEEEccCcchHHHHHhc--cccCCEEEEc
Confidence            5788888 899999999999999999999998876554444432   345677899999987665541  2356777665


Q ss_pred             CC
Q 030328          119 QG  120 (179)
Q Consensus       119 ag  120 (179)
                      .+
T Consensus        79 ~~   80 (153)
T d1id1a_          79 SD   80 (153)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.37  E-value=0.00055  Score=45.93  Aligned_cols=76  Identities=21%  Similarity=0.268  Sum_probs=49.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC-HHHHHHHHHh--hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRD-FDAVKTALDE--AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~v~~~~~~--~~~  111 (179)
                      .|.+++|.|+ ||+|...++.+...|++ |+++++++++.+. .+++    |.+...   |..+ .+.+.+.++.  .+.
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~l----Ga~~~i---~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEF----GATECI---NPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHH----TCSEEE---CGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHh----CCcEEE---eCCchhhHHHHHHHHHcCCC
Confidence            6889999998 59999999999999975 6777777776543 3333    433222   2221 2223333333  246


Q ss_pred             CcEEEecCC
Q 030328          112 VDVLVVNQG  120 (179)
Q Consensus       112 id~li~~ag  120 (179)
                      +|++|.+.|
T Consensus        99 ~D~vid~~G  107 (176)
T d2fzwa2          99 VDYSFECIG  107 (176)
T ss_dssp             BSEEEECSC
T ss_pred             CcEeeecCC
Confidence            899999887

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.37  E-value=0.00022  Score=48.17  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      +|++-|.|+ |.+|.++|..|+++|++|.+++|+++..+...+
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~   42 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD   42 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            588999999 999999999999999999999999887766554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.36  E-value=0.0037  Score=41.10  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=56.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-------eEEE--EecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-------RVSI--LARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-------~v~~--~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ++.|+||+|.+|.+++..|+..+.       ...+  .+++.+..+....++..........+...-.+    .   +..
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~   78 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDP----K---VAF   78 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCH----H---HHT
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCch----h---hhc
Confidence            799999999999999999997653       1222  23333444433333332222223333332111    1   233


Q ss_pred             CCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHh
Q 030328          110 GPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKK  159 (179)
Q Consensus       110 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~  159 (179)
                      ...|++|..+|....+   ..+.+++   +..|+.-    .+...+.+.+
T Consensus        79 ~~advViitaG~~~~p---g~~r~dl---~~~N~~i----~~~~~~~i~k  118 (154)
T d1y7ta1          79 KDADYALLVGAAPRKA---GMERRDL---LQVNGKI----FTEQGRALAE  118 (154)
T ss_dssp             TTCSEEEECCCCCCCT---TCCHHHH---HHHHHHH----HHHHHHHHHH
T ss_pred             ccccEEEeecCcCCCC---CCcHHHH---HHHHHHH----HHHHHHHHHH
Confidence            4789999999975432   2344443   4555433    3444444444

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.35  E-value=0.0026  Score=41.54  Aligned_cols=75  Identities=20%  Similarity=0.250  Sum_probs=51.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      |++.|+|+ |.+|.++|..++.+|.  +++++|.+++..+....++...   ..........|   .       +....-
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~-------~~l~~a   70 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W-------AALADA   70 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G-------GGGTTC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---H-------HHhccc
Confidence            67889996 8999999999999883  6999999988766555544321   12222322222   2       223468


Q ss_pred             cEEEecCCCCC
Q 030328          113 DVLVVNQGVFV  123 (179)
Q Consensus       113 d~li~~ag~~~  123 (179)
                      |++|..||...
T Consensus        71 diVVitaG~~~   81 (146)
T d1hyha1          71 DVVISTLGNIK   81 (146)
T ss_dssp             SEEEECCSCGG
T ss_pred             cEEEEeccccc
Confidence            99999999643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00029  Score=48.45  Aligned_cols=44  Identities=30%  Similarity=0.507  Sum_probs=37.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      =|++.|.|| |-+|..+|..++..|++|++.|++++.++...+.+
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i   47 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI   47 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhH
Confidence            378999999 88999999999999999999999998666554443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.33  E-value=0.00025  Score=47.68  Aligned_cols=45  Identities=20%  Similarity=0.283  Sum_probs=38.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~   81 (179)
                      ++|+++|.|+ ||.+++++..|.+.|+ ++.++.|+.++.+...+.+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            6789999999 8999999999999997 5899999998877665543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=0.0012  Score=43.22  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      ++.|+||+|.+|.++|..++.+|.  +++++|.++.+.+.  .++.  ..........-+ ...+..+.+   ...|++|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~--~~~~~~~~~~~~-~~~~~~~~~---~~aDivV   73 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLS--HIETRATVKGYL-GPEQLPDCL---KGCDVVV   73 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHT--TSSSSCEEEEEE-SGGGHHHHH---TTCSEEE
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHh--hhhhhcCCCeEE-cCCChHHHh---CCCCEEE
Confidence            688999999999999999999884  38899987643322  2232  111111111111 222233333   3789999


Q ss_pred             ecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          117 VNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       117 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ..||....+.   .+..+   .++.|+.-.    +...+.+.+...  ...++++|
T Consensus        74 itag~~~~~g---~sR~~---ll~~N~~i~----~~i~~~i~~~~p--~~iiivvt  117 (144)
T d1mlda1          74 IPAGVPRKPG---MTRDD---LFNTNATIV----ATLTAACAQHCP--DAMICIIS  117 (144)
T ss_dssp             ECCSCCCCTT---CCGGG---GHHHHHHHH----HHHHHHHHHHCT--TSEEEECS
T ss_pred             ECCCcCCCCC---CCcch---HHHHHHHHH----HHHHHHHHhcCC--CeEEEEec
Confidence            9999643221   23222   256665544    444444444422  23555554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.31  E-value=0.0026  Score=42.45  Aligned_cols=88  Identities=23%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+..+++|.|+ |-.|...++-....|+.|.+.|.+.+++++.......    .+..   -..+.+.+++.++   ..|+
T Consensus        30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----~~~~---~~~~~~~l~~~~~---~aDi   98 (168)
T d1pjca1          30 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVEL---LYSNSAEIETAVA---EADL   98 (168)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEE---EECCHHHHHHHHH---TCSE
T ss_pred             CCCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----ccee---ehhhhhhHHHhhc---cCcE
Confidence            35678999999 8899999999999999999999999988776655432    2222   3355666766665   6899


Q ss_pred             EEecCCCCCCCCcccCCHH
Q 030328          115 LVVNQGVFVPGELEVQSLD  133 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~  133 (179)
                      +|..+-....+...-++.+
T Consensus        99 vI~aalipG~~aP~lIt~~  117 (168)
T d1pjca1          99 LIGAVLVPGRRAPILVPAS  117 (168)
T ss_dssp             EEECCCCTTSSCCCCBCHH
T ss_pred             EEEeeecCCcccCeeecHH
Confidence            9999876554433334433

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.30  E-value=0.00029  Score=47.74  Aligned_cols=49  Identities=31%  Similarity=0.433  Sum_probs=42.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA   84 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~   84 (179)
                      ++++|+++|.|+ ||.+++++..|.+.| +|.+..|+.++.++..+++...
T Consensus        15 ~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~   63 (177)
T d1nvta1          15 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK   63 (177)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHh
Confidence            479999999999 789999999998777 8999999999988887777543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.17  E-value=0.0069  Score=39.77  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      +.+++.|.|+ |.+|..+|..++.++ ++++++|.+++.++.....+...   .+...... . -++.   ++..   ..
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~-~~~~---~~~~---~~   76 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-A-EYSY---EAAL---TG   76 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-E-ECSH---HHHH---TT
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEe-c-cCch---hhhh---cC
Confidence            5678888998 999999999999888 57999999887665555544321   12221111 1 1222   2222   36


Q ss_pred             CcEEEecCCCCC
Q 030328          112 VDVLVVNQGVFV  123 (179)
Q Consensus       112 id~li~~ag~~~  123 (179)
                      -|+++..+|...
T Consensus        77 adiVvitag~~~   88 (154)
T d1pzga1          77 ADCVIVTAGLTK   88 (154)
T ss_dssp             CSEEEECCSCSS
T ss_pred             CCeEEEeccccc
Confidence            899999998754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.13  E-value=0.0028  Score=43.57  Aligned_cols=103  Identities=19%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH----HHHH-hhcCceEEEEEeeCCCHHH--H-HH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK----QSIQ-LATGIEVATYSADVRDFDA--V-KT  104 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~----~~~~-~~~~~~v~~~~~D~~~~~~--v-~~  104 (179)
                      ..+.||++.|.|. |.||+.+|+.+...|++|+..++......+..    ..+. .....++..+.+.+++...  + ++
T Consensus        39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~  117 (197)
T d1j4aa1          39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE  117 (197)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred             ccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccHH
Confidence            4588999999999 99999999999999999999987644222110    0011 0113566677777665322  1 34


Q ss_pred             HHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhh
Q 030328          105 ALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN  142 (179)
Q Consensus       105 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n  142 (179)
                      .++...+=.++||.+-    +.+  .+.+++.+.++.+
T Consensus       118 ~l~~mk~~a~lIN~sR----G~i--vde~aL~~aL~~~  149 (197)
T d1j4aa1         118 SIAKMKQDVVIVNVSR----GPL--VDTDAVIRGLDSG  149 (197)
T ss_dssp             HHHHSCTTEEEEECSC----GGG--BCHHHHHHHHHHT
T ss_pred             HHhhhCCccEEEecCc----hhh--hhhHHHHHHHhcc
Confidence            4555543344555442    122  3555555555443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.12  E-value=0.0013  Score=43.58  Aligned_cols=40  Identities=23%  Similarity=0.250  Sum_probs=34.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      ++.|.|+ |.+|.++|+.|.++|++|++.||+++..++..+
T Consensus         2 kI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           2 KIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH
Confidence            4777877 999999999999999999999999887665444

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.015  Score=38.39  Aligned_cols=79  Identities=13%  Similarity=0.288  Sum_probs=52.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ++..++.|.|+ |.+|..+|..++.+|.  +++++|++++.++....++...   .+........|   .       +..
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~-------~~~   85 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---Y-------NVS   85 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---G-------GGG
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---h-------hhh
Confidence            44557888897 9999999999999874  5999999988766555555421   12222221222   1       233


Q ss_pred             CCCcEEEecCCCCCC
Q 030328          110 GPVDVLVVNQGVFVP  124 (179)
Q Consensus       110 ~~id~li~~ag~~~~  124 (179)
                      ..-|++|..||....
T Consensus        86 ~~adivvitag~~~~  100 (159)
T d2ldxa1          86 ANSKLVIITAGARMV  100 (159)
T ss_dssp             TTEEEEEECCSCCCC
T ss_pred             ccccEEEEecccccC
Confidence            468999999997543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.0012  Score=44.98  Aligned_cols=103  Identities=21%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH-----HH-hhcCceEEEEEeeCCCHHH--H-H
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS-----IQ-LATGIEVATYSADVRDFDA--V-K  103 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~-----~~-~~~~~~v~~~~~D~~~~~~--v-~  103 (179)
                      ..+.+|++.|.|. |.||+++++.+...|++|+..++...........     +. .....++..+.+.+++...  + +
T Consensus        40 ~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~  118 (184)
T d1ygya1          40 TEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDK  118 (184)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred             ccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhH
Confidence            3578999999997 9999999999999999999999865433222111     11 1123667777788776432  1 3


Q ss_pred             HHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhh
Q 030328          104 TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN  142 (179)
Q Consensus       104 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n  142 (179)
                      +.++... .+.++.|.|-   +.+  .+.+++.+.++.+
T Consensus       119 ~~l~~mk-~~a~lIN~sR---G~i--Vde~aL~~aL~~~  151 (184)
T d1ygya1         119 EALAKTK-PGVIIVNAAR---GGL--VDEAALADAITGG  151 (184)
T ss_dssp             HHHTTSC-TTEEEEECSC---TTS--BCHHHHHHHHHTS
T ss_pred             HHHhhhC-CCceEEEecc---hhh--hhhHHHHHHHhcC
Confidence            4455554 3544444442   222  3455555444443

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.10  E-value=0.015  Score=38.32  Aligned_cols=118  Identities=17%  Similarity=0.244  Sum_probs=70.5

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTAL  106 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~  106 (179)
                      ...+.++++.|.|+ |.+|.++|..++.+|.  +++++|++++..+....++.-.   .+.......   .+.       
T Consensus        15 ~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~---~d~-------   83 (160)
T d1i0za1          15 EATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD---KDY-------   83 (160)
T ss_dssp             CCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEEC---SSG-------
T ss_pred             cccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEec---cch-------
Confidence            34456778999997 9999999999999985  5999999988776555555321   122221111   111       


Q ss_pred             HhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          107 DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       107 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      +....-|++|..||....+.   .+..+   .++.|+.    +.+...+.+.+...  ...++++|
T Consensus        84 ~~~~~adiVVitAg~~~~~g---~tR~~---l~~~N~~----i~~~i~~~i~~~~p--~aiiivvt  137 (160)
T d1i0za1          84 SVTANSKIVVVTAGVRQQEG---ESRLN---LVQRNVN----VFKFIIPQIVKYSP--DCIIIVVS  137 (160)
T ss_dssp             GGGTTCSEEEECCSCCCCTT---CCGGG---GHHHHHH----HHHHHHHHHHHHCT--TCEEEECS
T ss_pred             hhcccccEEEEecCCccccC---cchHH---HHHHHHH----HHHHHHHHHHhcCC--CcEEEEeC
Confidence            22346899999999754321   22222   2444443    44555555555432  22555554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.013  Score=37.98  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc---CCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           39 HVFITGGSSGIGLALAHQAAKE---GARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++.|+|++|.+|.++|..|+.+   +.++.+.|..+. .+....++.-.. ...... ..+-.+.   + .++   .-|+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~Dl~h~~~~~~~~~-~~~~~~~---~-~~~---~aDv   72 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKG-FSGEDAT---P-ALE---GADV   72 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHHHHTSCSSCEEEE-ECSSCCH---H-HHT---TCSE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHHHHCCccccCCcE-EEcCCCc---c-ccC---CCCE
Confidence            6789999999999999998754   356899998653 332223332111 111111 1122222   2 222   5799


Q ss_pred             EEecCCCCC
Q 030328          115 LVVNQGVFV  123 (179)
Q Consensus       115 li~~ag~~~  123 (179)
                      +|..+|...
T Consensus        73 vvitaG~~~   81 (145)
T d2cmda1          73 VLISAGVRR   81 (145)
T ss_dssp             EEECCSCCC
T ss_pred             EEECCCccC
Confidence            999999754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.08  E-value=0.015  Score=37.76  Aligned_cols=100  Identities=24%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChh--HHHHHHHHHHh---hcCceEEEEEeeCCCHHHHHHHHHhhCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGE--KLEEAKQSIQL---ATGIEVATYSADVRDFDAVKTALDEAGP  111 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~--~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~~~~~~~~  111 (179)
                      ++.|+||+|.+|.++|..++.+|  -++.++|+++.  ..+....++..   .....+......-.+.       +....
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-------~~l~~   74 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-------RIIDE   74 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-------GGGTT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-------HHhcc
Confidence            58899999999999999999998  36999998764  23333333331   1122222221111121       23346


Q ss_pred             CcEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHH
Q 030328          112 VDVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIK  151 (179)
Q Consensus       112 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~  151 (179)
                      -|++|.+||....+.   .+..+   .++.|+.=.-.+.+
T Consensus        75 aDvVVitAG~~~~~g---~sR~d---l~~~Na~iv~~i~~  108 (145)
T d1hyea1          75 SDVVIITSGVPRKEG---MSRMD---LAKTNAKIVGKYAK  108 (145)
T ss_dssp             CSEEEECCSCCCCTT---CCHHH---HHHHHHHHHHHHHH
T ss_pred             ceEEEEecccccCCC---CChhh---hhhhhHHHHHHHHH
Confidence            899999999644322   23333   45666544433333

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.02  E-value=0.00052  Score=46.88  Aligned_cols=43  Identities=16%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      |++.|.|| |-+|..+|..++..|++|.+.|++++.+++..+.+
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i   47 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEA   47 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhh
Confidence            56889999 88999999999999999999999998766555443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.01  E-value=0.011  Score=38.21  Aligned_cols=75  Identities=11%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHh---hcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQL---ATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++.|+|| |.+|.+++..++.+|  -++.++|.+++..+.....+..   ...........  ++.       +.....|
T Consensus         2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~-------~~~~dad   71 (142)
T d1guza1           2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY-------ADTANSD   71 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG-------GGGTTCS
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH-------HHhcCCe
Confidence            4778897 999999999999987  4699999998766544443321   11222222222  222       2234789


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      +++..+|...
T Consensus        72 vvvitag~~~   81 (142)
T d1guza1          72 IVIITAGLPR   81 (142)
T ss_dssp             EEEECCSCCC
T ss_pred             EEEEEEecCC
Confidence            9999999654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0035  Score=38.97  Aligned_cols=70  Identities=14%  Similarity=0.212  Sum_probs=54.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ....++.|.|+ |-+|+-++....+.|+++++.|.+++.-.         ....-..+..|..|.+.+.++.++. .+|+
T Consensus         9 ~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA---------~~va~~~i~~~~~d~~~l~~~~~~~-~~Dv   77 (111)
T d1kjqa2           9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPA---------MHVAHRSHVINMLDGDALRRVVELE-KPHY   77 (111)
T ss_dssp             TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGG---------GGGSSEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred             CCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCch---------hhcCCeEEECCCCCHHHHHHHHHhh-CCce
Confidence            35568999996 89999999999999999999998765311         0112245778999999998888765 5787


Q ss_pred             E
Q 030328          115 L  115 (179)
Q Consensus       115 l  115 (179)
                      +
T Consensus        78 i   78 (111)
T d1kjqa2          78 I   78 (111)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.94  E-value=0.0056  Score=39.69  Aligned_cols=111  Identities=21%  Similarity=0.180  Sum_probs=58.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++.|.|+ |.+|.++|..++.++.  +++++|++++..+....++...  ..........   +       .+....-|+
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~-------~~~~~~adi   71 (142)
T d1y6ja1           3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---D-------YSDVKDCDV   71 (142)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C-------GGGGTTCSE
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---c-------HHHhCCCce
Confidence            4666797 9999999999999874  5999999987655444444311  0111221111   1       123456899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ++..||....+.   .+.   ...++.|+.-    .+...+.+.+...  ...++++|
T Consensus        72 vvitag~~~~~~---~~r---~~l~~~N~~i----~~~i~~~i~~~~p--~ai~ivvt  117 (142)
T d1y6ja1          72 IVVTAGANRKPG---ETR---LDLAKKNVMI----AKEVTQNIMKYYN--HGVILVVS  117 (142)
T ss_dssp             EEECCCC---------CH---HHHHHHHHHH----HHHHHHHHHHHCC--SCEEEECS
T ss_pred             EEEecccccCcC---cch---hHHhhHHHHH----HHHHHHHhhccCC--CceEEEec
Confidence            999999654221   222   2345555533    3444455544321  22555554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.93  E-value=0.02  Score=36.92  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecC--hhHHHHHHHHHHh--hcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARS--GEKLEEAKQSIQL--ATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~--~~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++.|+||+|.+|.++|..+..++.  ++++.|.+  ++..+....++..  ...........|   .+       ....-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~-------~~~~a   71 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YE-------DTAGS   71 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GG-------GGTTC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HH-------Hhhhc
Confidence            578999999999999999999884  48888854  3333323333321  112222222222   22       23468


Q ss_pred             cEEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          113 DVLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       113 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      |++|..||....+.   .+..+   .++.|+.    +.+...+.+.+...  ...++.+|
T Consensus        72 DiVvitaG~~~~~g---~~R~d---l~~~N~~----I~~~i~~~i~~~~p--~~i~ivvt  119 (142)
T d1o6za1          72 DVVVITAGIPRQPG---QTRID---LAGDNAP----IMEDIQSSLDEHND--DYISLTTS  119 (142)
T ss_dssp             SEEEECCCCCCCTT---CCHHH---HHHHHHH----HHHHHHHHHHTTCS--CCEEEECC
T ss_pred             CEEEEecccccccC---Cchhh---HHHHHHH----HHHHHHHHHHhcCC--CceEEEec
Confidence            99999999643221   23333   4565653    34455555554432  23455543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.91  E-value=0.01  Score=38.81  Aligned_cols=76  Identities=13%  Similarity=0.198  Sum_probs=50.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++-|.|+ |.+|.++|..+..++ .++.++|++++..+....++...   .+........+  +.       +....-|
T Consensus         4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~-------~~~~~ad   73 (150)
T d1t2da1           4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY-------DDLAGAD   73 (150)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG-------GGGTTCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc-------cccCCCc
Confidence            46788896 999999999888887 45899999887665555544321   12332222222  11       2334689


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|..+|...
T Consensus        74 vvvitag~~~   83 (150)
T d1t2da1          74 VVIVTAGFTK   83 (150)
T ss_dssp             EEEECCSCSS
T ss_pred             EEEEeccccc
Confidence            9999999654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.88  E-value=0.0042  Score=42.50  Aligned_cols=100  Identities=16%  Similarity=0.123  Sum_probs=61.7

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH---------HHHHHhhcCceEEEEEeeCCCHHH--
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA---------KQSIQLATGIEVATYSADVRDFDA--  101 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~---------~~~~~~~~~~~v~~~~~D~~~~~~--  101 (179)
                      ..+.||++.|.|. |.||+.+|+.+...|++|+..++........         .+++.  ...++..+.+.+++...  
T Consensus        45 ~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll--~~sD~i~~~~plt~~T~~l  121 (193)
T d1mx3a1          45 ARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLL--FHSDCVTLHCGLNEHNHHL  121 (193)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHH--HHCSEEEECCCCCTTCTTS
T ss_pred             eeeeCceEEEecc-ccccccceeeeeccccceeeccCcccccchhhhccccccchhhcc--ccCCEEEEeecccccchhh
Confidence            4589999999998 9999999999999999999999864321111         11111  23567777777765332  


Q ss_pred             H-HHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHh
Q 030328          102 V-KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDV  141 (179)
Q Consensus       102 v-~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~  141 (179)
                      + ++.++...+=-++||.+-    +.+  .+.+++.+.++.
T Consensus       122 i~~~~l~~mk~~a~lIN~sR----G~i--vde~aL~~aL~~  156 (193)
T d1mx3a1         122 INDFTVKQMRQGAFLVNTAR----GGL--VDEKALAQALKE  156 (193)
T ss_dssp             BSHHHHTTSCTTEEEEECSC----TTS--BCHHHHHHHHHH
T ss_pred             hhHHHHhccCCCCeEEecCC----ceE--EcHHHHHHHHHc
Confidence            1 344555543334555442    222  355555554443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.81  E-value=0.0016  Score=44.89  Aligned_cols=43  Identities=26%  Similarity=0.403  Sum_probs=38.2

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      +++||+++|-|- |.+|..+|+.|.+.|++|+++|.+.+.....
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            589999999986 8899999999999999999999988766544

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.79  E-value=0.021  Score=36.74  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=61.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHh---hcCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQL---ATGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++-|.|+ |.+|.++|..++.++ ++++++|.+++..+....++..   ...........  .|.       +....-|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~--~d~-------~~~~~ad   71 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNY-------ADTANSD   71 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCG-------GGGTTCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEec--CcH-------HHhcCCC
Confidence            46777797 999999999999887 4799999988765554444421   11122111111  111       1234689


Q ss_pred             EEEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          114 VLVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       114 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      ++|.+||....+.   .+.   .+.++.|+    .+.+...+.+.+...  ...++++|
T Consensus        72 vvvitag~~~~~~---~~r---~dl~~~N~----~i~~~i~~~i~k~~p--~aivivvt  118 (142)
T d1uxja1          72 VIVVTSGAPRKPG---MSR---EDLIKVNA----DITRACISQAAPLSP--NAVIIMVN  118 (142)
T ss_dssp             EEEECCSCC---------------CHHHHH----HHHHHHHHHHGGGCT--TCEEEECS
T ss_pred             EEEEeeeccCCcC---cch---hHHHhHHH----HHHHHHHHHHhccCC--CceEEEeC
Confidence            9999999654321   121   22345554    345556666555432  23454443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.75  E-value=0.0011  Score=44.64  Aligned_cols=42  Identities=17%  Similarity=0.227  Sum_probs=37.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      .++|-+.|- |.+|.++|++|.++|++|++.+|++++.++..+
T Consensus         2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~   43 (176)
T d2pgda2           2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA   43 (176)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH
T ss_pred             CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            456788888 999999999999999999999999988776654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.73  E-value=0.0032  Score=43.27  Aligned_cols=101  Identities=12%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH------HHHHHHhhcCceEEEEEeeCCCHHH--H-H
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE------AKQSIQLATGIEVATYSADVRDFDA--V-K  103 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~------~~~~~~~~~~~~v~~~~~D~~~~~~--v-~  103 (179)
                      ..+.+|++.|.|. |.||+.+|+.+...|++|+..++.......      ..+++.  ...++..+.+.+++...  + +
T Consensus        41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~--~~~D~v~~~~plt~~T~~li~~  117 (199)
T d1dxya1          41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLF--KQSDVIDLHVPGIEQNTHIINE  117 (199)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHH--HHCSEEEECCCCCGGGTTSBCH
T ss_pred             ccccceeeeeeec-ccccccccccccccceeeeccCCccchhhhcchhHHHHHHHH--HhcccceeeecccccccccccH
Confidence            4678999999999 899999999999999999999986432100      011121  13567777777765432  1 3


Q ss_pred             HHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhh
Q 030328          104 TALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN  142 (179)
Q Consensus       104 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n  142 (179)
                      +.++...+=.++||.+-    +.+  .+.+++.+.++.+
T Consensus       118 ~~l~~mk~~a~lIN~aR----G~v--vde~aL~~aL~~g  150 (199)
T d1dxya1         118 AAFNLMKPGAIVINTAR----PNL--IDTQAMLSNLKSG  150 (199)
T ss_dssp             HHHHHSCTTEEEEECSC----TTS--BCHHHHHHHHHTT
T ss_pred             HHhhccCCceEEEeccc----Hhh--hhhHHHHHHHhcC
Confidence            45566643344555442    222  3555555555544

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.73  E-value=0.0014  Score=44.03  Aligned_cols=41  Identities=29%  Similarity=0.357  Sum_probs=35.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      ++-|.|- |.+|.++|++|++.|++|.+.||++++.++..++
T Consensus         3 kIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~   43 (178)
T d1pgja2           3 DVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA   43 (178)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             EEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            3666666 9999999999999999999999999988777664

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.72  E-value=0.00091  Score=45.76  Aligned_cols=44  Identities=18%  Similarity=0.219  Sum_probs=37.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      +.+++.|.|| |..|.++|..|++.|.+|.+++|+++..+++.+.
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~   49 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK   49 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH
T ss_pred             eeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc
Confidence            4467999999 8899999999999999999999998877665543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.71  E-value=0.0074  Score=40.92  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=62.8

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH-------HH-hhcCceEEEEEeeCCCHHH--H
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS-------IQ-LATGIEVATYSADVRDFDA--V  102 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~-~~~~~~v~~~~~D~~~~~~--v  102 (179)
                      ..+.++++.|.|. |.||+++++.+...|++|+..++...........       +. .....++..+.+++++...  +
T Consensus        40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li  118 (188)
T d2naca1          40 YDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI  118 (188)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB
T ss_pred             eeccccceeeccc-cccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhh
Confidence            3578999999998 8999999999999999999999854321111110       01 1124667777777776432  1


Q ss_pred             -HHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhh
Q 030328          103 -KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN  142 (179)
Q Consensus       103 -~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n  142 (179)
                       ++.++... -+.++-|.+-   +.+  .+.+++.+.++.+
T Consensus       119 ~~~~l~~mk-~ga~lIN~aR---G~i--vd~~aL~~aL~~g  153 (188)
T d2naca1         119 NDETLKLFK-RGAYIVNTAR---GKL--CDRDAVARALESG  153 (188)
T ss_dssp             SHHHHTTSC-TTEEEEECSC---GGG--BCHHHHHHHHHTT
T ss_pred             HHHHHHhCC-CCCEEEecCc---hhh--hhHHHHHHHHhCC
Confidence             34555553 4544444442   222  3556655555544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.64  E-value=0.035  Score=35.58  Aligned_cols=111  Identities=14%  Similarity=0.208  Sum_probs=64.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++-|.|+ |.+|.++|..++.++  .++.++|.+++.++....++...  ..........|   .       +.....|+
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~-------~~~~~adi   70 (140)
T d1a5za1           2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---Y-------ADLKGSDV   70 (140)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---G-------GGGTTCSE
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---H-------HHhcCCCE
Confidence            5667797 899999999999887  46999999988766555444321  11222222222   2       22346899


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      +|.+||....+.   .+..+   .+..|+    .+.+...+.+.+...  ...++++|
T Consensus        71 vvitag~~~~~g---~~r~d---l~~~N~----~I~~~i~~~i~~~~p--~aivivvt  116 (140)
T d1a5za1          71 VIVAAGVPQKPG---ETRLQ---LLGRNA----RVMKEIARNVSKYAP--DSIVIVVT  116 (140)
T ss_dssp             EEECCCCCCCSS---CCHHH---HHHHHH----HHHHHHHHHHHHHCT--TCEEEECS
T ss_pred             EEEecccccCCC---cchhh---hhcccc----chHHHHHHHHHhcCC--CcEEEEeC
Confidence            999999754322   23333   244443    334555555555432  23555543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.63  E-value=0.012  Score=38.57  Aligned_cols=80  Identities=16%  Similarity=0.097  Sum_probs=45.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC-------eEEEEecChh--HHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA-------RVSILARSGE--KLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .++.|+||+|.+|.+++..|+..+.       .+.+.|.++.  .++....++..........+..  ++.  ..+.   
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~--~~~~---   76 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIA--TDK--EEIA---   76 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEE--ESC--HHHH---
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccccccccc--Ccc--cccc---
Confidence            3799999999999999999987542       2555555443  2222222222111112222221  111  1222   


Q ss_pred             hCCCcEEEecCCCCCC
Q 030328          109 AGPVDVLVVNQGVFVP  124 (179)
Q Consensus       109 ~~~id~li~~ag~~~~  124 (179)
                      ....|++|..+|....
T Consensus        77 ~~~~dvVVitag~~~~   92 (154)
T d5mdha1          77 FKDLDVAILVGSMPRR   92 (154)
T ss_dssp             TTTCSEEEECCSCCCC
T ss_pred             cCCceEEEEecccCCC
Confidence            3368999999997554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.60  E-value=0.0028  Score=41.97  Aligned_cols=40  Identities=13%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAK   78 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   78 (179)
                      ++|-+.|- |.+|.++|++|.++|++|.+.+|++++.+...
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~   41 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV   41 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhhh
Confidence            45777776 99999999999999999999999988766544

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0022  Score=42.73  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      ..++.||+++|.|.|.-+|+-++..|.++|++|+.++......+
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~   75 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR   75 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhH
Confidence            34579999999999999999999999999999998887665444

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.0012  Score=43.25  Aligned_cols=36  Identities=19%  Similarity=0.555  Sum_probs=32.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      .++||++||+|| |.+|..-++.|.+.|++|++++..
T Consensus        10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            579999999999 779999999999999999998643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.57  E-value=0.0029  Score=41.83  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      ++-+.|- |.+|..+|+.|+++|++|++.+|+++..++..+
T Consensus         2 kIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~   41 (161)
T d1vpda2           2 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA   41 (161)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH
Confidence            4667777 999999999999999999999999987776544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0012  Score=43.51  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      ++|.|.|+ |.+|..++..|++.|++|.+++|+++.
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            36889999 999999999999999999999998753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.53  E-value=0.002  Score=40.97  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=49.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEe
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVV  117 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~  117 (179)
                      |+++|.|. |.+|..++++|.  |.++++++.+++..+....     .  .+.++.+|.++++.++++  ...+.+.++.
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~-----~--~~~~i~Gd~~~~~~L~~a--~i~~A~~vi~   68 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVLR-----S--GANFVHGDPTRVSDLEKA--NVRGARAVIV   68 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHHH-----T--TCEEEESCTTSHHHHHHT--TCTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHHh-----c--CccccccccCCHHHHHHh--hhhcCcEEEE
Confidence            56888887 889999999994  5678888988876554321     1  356778999998766553  2335677665


Q ss_pred             cC
Q 030328          118 NQ  119 (179)
Q Consensus       118 ~a  119 (179)
                      ..
T Consensus        69 ~~   70 (129)
T d2fy8a1          69 NL   70 (129)
T ss_dssp             CC
T ss_pred             ec
Confidence            44

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0021  Score=43.11  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      ..+++||+++|.|.|.-+|+-++..|.++|++|..++.......
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~   77 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD   77 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHH
Confidence            44689999999999999999999999999999999888665544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.014  Score=39.53  Aligned_cols=100  Identities=12%  Similarity=0.125  Sum_probs=64.2

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH-------HHHHHHHHHhhcCceEEEEEeeCCCHHH--H-
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK-------LEEAKQSIQLATGIEVATYSADVRDFDA--V-  102 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~~~~v~~~~~D~~~~~~--v-  102 (179)
                      ..+.++++.|.|. |.||+.+|+.+...|++|+..++....       .+.. +++..  ..++..+.+.+++...  + 
T Consensus        40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l-~ell~--~sDii~i~~plt~~T~~li~  115 (188)
T d1sc6a1          40 FEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHL-SDLLN--MSDVVSLHVPENPSTKNMMG  115 (188)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCH-HHHHH--HCSEEEECCCSSTTTTTCBC
T ss_pred             ccccceEEEEeec-ccchhhhhhhcccccceEeeccccccchhhhhhhhhhH-HHHHh--hccceeecccCCcchhhhcc
Confidence            3578999999988 999999999999999999999876431       1111 12211  2567777788776332  1 


Q ss_pred             HHHHHhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhh
Q 030328          103 KTALDEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN  142 (179)
Q Consensus       103 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n  142 (179)
                      ++.++..++=.++||.+-    +++  .+.+++.+.++-+
T Consensus       116 ~~~l~~mk~~a~lIN~aR----G~l--vde~aL~~aL~~~  149 (188)
T d1sc6a1         116 AKEISLMKPGSLLINASR----GTV--VDIPALADALASK  149 (188)
T ss_dssp             HHHHHHSCTTEEEEECSC----SSS--BCHHHHHHHHHTT
T ss_pred             HHHHhhCCCCCEEEEcCc----HHh--hhhHHHHHHHHcC
Confidence            456666644344555542    222  3566666655554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.46  E-value=0.0036  Score=41.54  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHH
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQ   79 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~   79 (179)
                      |+++|.|. |.||.++|+.|.++|+  +|++.|++++..+...+
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            57899987 9999999999999996  68899999887665544

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0043  Score=41.17  Aligned_cols=41  Identities=22%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      ...+.||+++|.|- |.+|+.+|+.+...|++|++++.++.+
T Consensus        19 ~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~   59 (163)
T d1li4a1          19 DVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPIN   59 (163)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccch
Confidence            34579999999998 699999999999999999999999854

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.37  E-value=0.0042  Score=40.56  Aligned_cols=76  Identities=20%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhh--------cCceEEEEEeeCCCHHHHHHHHHhh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLA--------TGIEVATYSADVRDFDAVKTALDEA  109 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~--------~~~~v~~~~~D~~~~~~v~~~~~~~  109 (179)
                      ++.+.|+ |.+|.++++.|.+.| .++++.+|++++.++..++....        ...++.++.   ..++++.+++++.
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~la---vkP~~~~~v~~~l   77 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILA---VKPQDMEAACKNI   77 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEEC---SCHHHHHHHHTTC
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEe---cCHHHHHHhHHHH
Confidence            4677788 999999999999887 88999999998887776653210        012222222   2377778877765


Q ss_pred             CCCc-EEEec
Q 030328          110 GPVD-VLVVN  118 (179)
Q Consensus       110 ~~id-~li~~  118 (179)
                      .+.+ .++..
T Consensus        78 ~~~~~~viS~   87 (152)
T d1yqga2          78 RTNGALVLSV   87 (152)
T ss_dssp             CCTTCEEEEC
T ss_pred             hhcccEEeec
Confidence            3333 44444

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.35  E-value=0.01  Score=36.81  Aligned_cols=35  Identities=34%  Similarity=0.604  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .|+++|.|| |.+|..+|..|++.|.+|.++.|.++
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            378999998 99999999999999999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.30  E-value=0.0034  Score=39.62  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ..|+++|.|| |.+|..+|..|+++|.+|.++.+.++
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence            5678999988 89999999999999999999988653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.018  Score=40.49  Aligned_cols=36  Identities=31%  Similarity=0.499  Sum_probs=31.7

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecC
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARS   70 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~   70 (179)
                      .+++++|+|.|+ ||+|..++..|+..|.. +.++|.+
T Consensus        27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCc
Confidence            478899999997 89999999999999975 7888765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.26  E-value=0.0033  Score=39.58  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .+|+++|.|| |.+|..+|..|.++|.+|.++.+.++
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            3688999998 99999999999999999999998764

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.23  E-value=0.0077  Score=41.01  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=53.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH-------HH-hhcCceEEEEEeeCCCHHH--H
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS-------IQ-LATGIEVATYSADVRDFDA--V  102 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~-~~~~~~v~~~~~D~~~~~~--v  102 (179)
                      ..+.+|++.|.|. |.||+++|+.+...|++++..++.....+.....       +. .....++..+.+.+++...  +
T Consensus        43 ~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li  121 (191)
T d1gdha1          43 EKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF  121 (191)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             ceecccceEEeec-ccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhhee
Confidence            3578999999999 8999999999999999999998754322111110       11 1123566777777765322  1


Q ss_pred             -HHHHHhhCCCcEEEecCC
Q 030328          103 -KTALDEAGPVDVLVVNQG  120 (179)
Q Consensus       103 -~~~~~~~~~id~li~~ag  120 (179)
                       ++.++... -+.++-|.+
T Consensus       122 ~~~~l~~mk-~~a~lIN~s  139 (191)
T d1gdha1         122 NKATIKSLP-QGAIVVNTA  139 (191)
T ss_dssp             SHHHHTTSC-TTEEEEECS
T ss_pred             cHHHhhCcC-CccEEEecC
Confidence             34455554 344444443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.17  E-value=0.073  Score=34.17  Aligned_cols=112  Identities=21%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ++.|.|+ |.+|.++|..++.+|.  +++++|.+++..+....++...  ..........  .+.       +....-|+
T Consensus         3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~-------~~~~daDv   72 (143)
T d1llda1           3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP-------EICRDADM   72 (143)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG-------GGGTTCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCH-------HHhhCCcE
Confidence            4667797 9999999999999884  5999999987765544444321  1111122111  111       22336799


Q ss_pred             EEecCCCCCCCCcccCCHHHHHHHHHhhhhHHHHHHHHHcHHHHhccCCCCcEEEEec
Q 030328          115 LVVNQGVFVPGELEVQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQNGGPASIALMS  172 (179)
Q Consensus       115 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~iv~is  172 (179)
                      +|..||....+   ..+..+   .+..|+.    +.+...+.+.+...  ...++++|
T Consensus        73 VVitaG~~~~~---g~~R~d---l~~~N~~----i~~~i~~~i~~~~p--~ai~ivvt  118 (143)
T d1llda1          73 VVITAGPRQKP---GQSRLE---LVGATVN----ILKAIMPNLVKVAP--NAIYMLIT  118 (143)
T ss_dssp             EEECCCCCCCT---TCCHHH---HHHHHHH----HHHHHHHHHHHHCT--TSEEEECC
T ss_pred             EEEecccccCC---CCchhh---hhhhhHH----HHHHHHHHHHhhCC--CeEEEEeC
Confidence            99999965432   133333   3555553    33444444444332  22445443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.13  E-value=0.0058  Score=39.96  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=35.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      ++.+.|+ |-+|.++++.|.+.|+++++.+|+.++.++..++.
T Consensus         2 kIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~   43 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL   43 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred             EEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence            4667777 99999999999999999999999988877766554

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.12  E-value=0.009  Score=41.90  Aligned_cols=47  Identities=17%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      .+++||+++|-|- |.+|..+|+.|.+.|++++.++.+....+....+
T Consensus        35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~   81 (230)
T d1leha1          35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE   81 (230)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHh
Confidence            4579999999998 8999999999999999999999998777665554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.11  E-value=0.0036  Score=43.66  Aligned_cols=35  Identities=37%  Similarity=0.473  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ..|+|+|.|| |-.|.+.|.+|+++|++|.+++|+.
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4568999999 8999999999999999999999853

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.016  Score=36.42  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      |+++|.|+ |.+|..+|..|++.|.+|.++.|++
T Consensus        23 k~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            78999998 7999999999999999999999975

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.005  Score=41.23  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=34.9

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      .+++||+++|.|.|.-+|+-+|..|.++|++|..++.+
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            36899999999999999999999999999999987764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0062  Score=41.09  Aligned_cols=36  Identities=25%  Similarity=0.498  Sum_probs=33.2

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .+.|+++|.|| |.-|.+.|..|+++|++|.+.++++
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            46789999999 8999999999999999999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.95  E-value=0.0033  Score=44.60  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      +|+|+|.|| |--|...|.+|+++|++|.++++++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            588999998 8889999999999999999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0047  Score=38.46  Aligned_cols=34  Identities=21%  Similarity=0.292  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      |+++|.|| |.+|..+|..|.+.|.+|.++.|.++
T Consensus        22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence            67888888 99999999999999999999999763

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.93  E-value=0.0052  Score=41.37  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      +|.|.|+ |..|.++|..|+++|.+|.++.|+.+
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~   34 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD   34 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            5778888 99999999999999999999998644

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.90  E-value=0.0053  Score=38.56  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .|+++|.|| |.+|..+|..|+++|.+|.++.+++.
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence            478899998 99999999999999999999998753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0052  Score=38.65  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      -|+++|.|| |.||..+|..|++.|.+|.++.++++
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence            378999998 89999999999999999999998763

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.86  E-value=0.1  Score=33.35  Aligned_cols=75  Identities=11%  Similarity=0.116  Sum_probs=48.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC--eEEEEecChhHHHHHHHHHHhh---cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA--RVSILARSGEKLEEAKQSIQLA---TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++.|.|+ |.+|.++|..++.+|.  +++++|.+++..+....++...   ..........  +|.       +....-|
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~-------~~~~~ad   71 (142)
T d1ojua1           2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY-------SLLKGSE   71 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCG-------GGGTTCS
T ss_pred             EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCH-------HHhcccc
Confidence            5677797 9999999999998873  4999999988765544444311   1122222221  111       2334689


Q ss_pred             EEEecCCCCC
Q 030328          114 VLVVNQGVFV  123 (179)
Q Consensus       114 ~li~~ag~~~  123 (179)
                      ++|..||...
T Consensus        72 iVvitag~~~   81 (142)
T d1ojua1          72 IIVVTAGLAR   81 (142)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEeccccC
Confidence            9999999644

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.84  E-value=0.0066  Score=37.86  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .+|+++|.|+ |.+|..+|..|++.|.+|.++.+.++
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            4789999998 99999999999999999999998754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0059  Score=46.86  Aligned_cols=35  Identities=20%  Similarity=0.459  Sum_probs=30.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARS   70 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~   70 (179)
                      +++.+|||.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence            45778999999 8899999999999997 58888875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.82  E-value=0.0049  Score=38.50  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .|+++|.|| |.+|..+|..|++.|.+|.++.|.+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            478999998 9999999999999999999999865

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.82  E-value=0.013  Score=39.04  Aligned_cols=44  Identities=11%  Similarity=-0.020  Sum_probs=37.4

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      ..+++||..|++.|   ..+..|+++|++|+++|.++...+...+..
T Consensus        19 ~~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~   62 (201)
T d1pjza_          19 VPGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTER   62 (201)
T ss_dssp             CTTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHH
T ss_pred             CCCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHh
Confidence            36889999999888   477799999999999999999877766654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.80  E-value=0.0091  Score=40.84  Aligned_cols=38  Identities=21%  Similarity=0.154  Sum_probs=32.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ++.|.|. |.+|..+|..|+++|++|+++|.+++..+..
T Consensus         2 kI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~~i~~l   39 (202)
T d1mv8a2           2 RISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTKIDLI   39 (202)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence            4667766 9999999999999999999999998765544

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.77  E-value=0.011  Score=39.95  Aligned_cols=100  Identities=18%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHH----HHHHHHhhcCceEEEEEeeCCCHHH--H-HHHH
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEE----AKQSIQLATGIEVATYSADVRDFDA--V-KTAL  106 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~----~~~~~~~~~~~~v~~~~~D~~~~~~--v-~~~~  106 (179)
                      .+.||++.|.|. |.||+.+++.+...|++|+..++++.+...    ..+++  ....++..+.+.+++...  + ++.+
T Consensus        39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~el--l~~sDiv~~~~pl~~~t~~li~~~~l  115 (181)
T d1qp8a1          39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEA--LREARAAVCALPLNKHTRGLVKYQHL  115 (181)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHH--HTTCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             cccCceEEEecc-ccccccceeeeeccccccccccccccccceeeeechhhh--hhccchhhccccccccccccccccee
Confidence            478999999999 779999999999999999999987542110    01111  124566666666654221  1 3445


Q ss_pred             HhhCCCcEEEecCCCCCCCCcccCCHHHHHHHHHhh
Q 030328          107 DEAGPVDVLVVNQGVFVPGELEVQSLDEVRLMIDVN  142 (179)
Q Consensus       107 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n  142 (179)
                      +...+=.++||.+-    +++  .+.+++.+.++-+
T Consensus       116 ~~mk~~ailIN~~R----G~i--vd~~aL~~aL~~~  145 (181)
T d1qp8a1         116 ALMAEDAVFVNVGR----AEV--LDRDGVLRILKER  145 (181)
T ss_dssp             TTSCTTCEEEECSC----GGG--BCHHHHHHHHHHC
T ss_pred             eeccccceEEeccc----ccc--ccchhhhhhcccC
Confidence            55544345555441    222  3555555555543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.75  E-value=0.0058  Score=37.91  Aligned_cols=35  Identities=34%  Similarity=0.529  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .|+++|.|| |.+|..+|..|++.|.+|.++.+.++
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence            378888888 99999999999999999999988753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.75  E-value=0.0052  Score=45.10  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ++|+++|.|| |--|...|.+|+++|.+|.++.++..
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            4789999999 88999999999999999999998765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.73  E-value=0.0072  Score=37.76  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .++++|.|| |.||..+|..|++.|.+|.++.++++
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence            478999998 99999999999999999999987653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.72  E-value=0.0048  Score=41.42  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~   72 (179)
                      .+|+|+|.|| |..|...|..|+++|++ |.+.++++.
T Consensus         3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            4689999999 89999999999999995 989988753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.016  Score=36.71  Aligned_cols=71  Identities=13%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEE-EecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSI-LARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDVL  115 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~-~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~l  115 (179)
                      ++.|.|++|.+|+++++.+.++|++++. ++++...         .....+   +..|+|.++...+.++..  .+..++
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~---------~~~~~D---VvIDFS~p~~~~~~l~~~~~~~~p~V   69 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE---------ELDSPD---VVIDFSSPEALPKTVDLCKKYRAGLV   69 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE---------ECSCCS---EEEECSCGGGHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH---------HhccCC---EEEEecCHHHHHHHHHHHHhcCCCEE
Confidence            5899999999999999999999999764 4544321         011334   356999998887766542  245667


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      +=..|.
T Consensus        70 iGTTG~   75 (128)
T d1vm6a3          70 LGTTAL   75 (128)
T ss_dssp             ECCCSC
T ss_pred             EEcCCC
Confidence            666663

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.69  E-value=0.0067  Score=42.53  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ..++|+|.|| |--|..+|..|+++|.+|.++++++
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5678999999 8999999999999999999999864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.03  Score=40.72  Aligned_cols=74  Identities=27%  Similarity=0.324  Sum_probs=48.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHh-hcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQL-ATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .++|+||-.|+++|+   ++..+++.|+ +|++++.++.... ..+.... .....+.++..|+.+..      ....++
T Consensus        34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~------~~~~~~  103 (311)
T d2fyta1          34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVH------LPVEKV  103 (311)
T ss_dssp             TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSC------CSCSCE
T ss_pred             CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhc------Cccccc
Confidence            479999999999886   5667788897 5999998876433 2222222 22456777887776532      112367


Q ss_pred             cEEEec
Q 030328          113 DVLVVN  118 (179)
Q Consensus       113 d~li~~  118 (179)
                      |+++..
T Consensus       104 D~Ivse  109 (311)
T d2fyta1         104 DVIISE  109 (311)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            877764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.64  E-value=0.01  Score=41.32  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=32.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      -..|+++|.|| |..|...|.+|+++|++|.+++++.
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence            46899999999 8999999999999999999998765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.045  Score=37.58  Aligned_cols=80  Identities=26%  Similarity=0.258  Sum_probs=56.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.+||-.|+++|--.+...++...+.+|+.++.+++..+...+.+....-..+..+..|..+      .....+++|.+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~------~~~~~~~fD~I  148 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY------GVPEFSPYDVI  148 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG------CCGGGCCEEEE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH------ccccccchhhh
Confidence            477999999998877776666665667999999999988877776655433456666666532      11223578998


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      +.+++.
T Consensus       149 ~~~~~~  154 (213)
T d1dl5a1         149 FVTVGV  154 (213)
T ss_dssp             EECSBB
T ss_pred             hhhccH
Confidence            888764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.60  E-value=0.017  Score=38.15  Aligned_cols=41  Identities=27%  Similarity=0.214  Sum_probs=37.1

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      ...+.||+++|.|- |-+|+.+|+++...|++|+++..+|-+
T Consensus        18 ~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~   58 (163)
T d1v8ba1          18 DFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPIC   58 (163)
T ss_dssp             CCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             CceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchh
Confidence            34579999999999 899999999999999999999999854

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.027  Score=35.15  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      ++++|.|| |.||..+|..|.+.|.+|.++.|+
T Consensus        21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            57889998 999999999999999999999876

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.55  E-value=0.0058  Score=38.48  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .|+++|.|| |.||..+|..|.+.|.+|.++.|+++
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence            478899998 99999999999999999999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.51  E-value=0.056  Score=36.25  Aligned_cols=43  Identities=21%  Similarity=0.186  Sum_probs=37.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~   79 (179)
                      ...+++|.|| |-.|...++-....|+.|.+.|.+.+..++..+
T Consensus        28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~   70 (183)
T d1l7da1          28 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES   70 (183)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence            3458999999 889999999999999999999999987776654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.46  E-value=0.01  Score=37.86  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ..|+++|.|| |.+|..+|..|.+.|.+|.++.+.+.
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence            4688999998 99999999999999999999998754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.44  E-value=0.023  Score=34.01  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=45.9

Q ss_pred             CCcEEEEEcCCCchH-HHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIG-LALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG-~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      +.|++-+.|- +|+| .++|+.|.++|++|...|+.....-   +.+.. .|..+.  ..+-  ++       ...+.|.
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~---~~L~~-~Gi~v~--~g~~--~~-------~i~~~d~   70 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVT---QRLAQ-AGAKIY--IGHA--EE-------HIEGASV   70 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHH---HHHHH-TTCEEE--ESCC--GG-------GGTTCSE
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhh---hHHHH-CCCeEE--ECCc--cc-------cCCCCCE
Confidence            5678888887 6666 6779999999999999998754322   22322 244432  2211  11       1235798


Q ss_pred             EEecCCCCC
Q 030328          115 LVVNQGVFV  123 (179)
Q Consensus       115 li~~ag~~~  123 (179)
                      +|...+...
T Consensus        71 vV~S~AI~~   79 (96)
T d1p3da1          71 VVVSSAIKD   79 (96)
T ss_dssp             EEECTTSCT
T ss_pred             EEECCCcCC
Confidence            888887643

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.43  E-value=0.068  Score=36.20  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      ++.+||=.|+++|.   ++..|++.|++|+++|.+++..+...+.... .+..+..+..|..+..     + ..+.+|++
T Consensus        37 ~~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~-~~~~~~~~~~d~~~l~-----~-~~~~fD~I  106 (226)
T d1ve3a1          37 KRGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKS-RESNVEFIVGDARKLS-----F-EDKTFDYV  106 (226)
T ss_dssp             SCCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEECCTTSCC-----S-CTTCEEEE
T ss_pred             CCCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhcc-cccccccccccccccc-----c-cCcCceEE
Confidence            45689999999886   6678889999999999998877766554433 2455666777766521     1 12468887


Q ss_pred             EecCC
Q 030328          116 VVNQG  120 (179)
Q Consensus       116 i~~ag  120 (179)
                      +....
T Consensus       107 ~~~~~  111 (226)
T d1ve3a1         107 IFIDS  111 (226)
T ss_dssp             EEESC
T ss_pred             EEecc
Confidence            77654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.40  E-value=0.07  Score=33.94  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHH-cCCeEE-EEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhh--CCCcE
Q 030328           39 HVFITGGSSGIGLALAHQAAK-EGARVS-ILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVDV  114 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~-~g~~v~-~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~--~~id~  114 (179)
                      ++.|.|++|.+|+++++...+ .++++. .+|+... ...    . ...+.+   +..|++.++...+.++..  .+.-+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~-~~~----~-~~~~~D---vvIDFS~p~~~~~~~~~~~~~~~~~   71 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP-LSL----L-TDGNTE---VVIDFTHPDVVMGNLEFLIDNGIHA   71 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC-THH----H-HTTTCS---EEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-hhh----h-ccccCC---EEEEcccHHHHHHHHHHHHhcCCCE
Confidence            578999999999999998765 467755 4555432 211    1 112344   457999988877665542  24666


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      ++=..|
T Consensus        72 ViGTTG   77 (135)
T d1yl7a1          72 VVGTTG   77 (135)
T ss_dssp             EECCCC
T ss_pred             EEeccc
Confidence            766666

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.38  E-value=0.0072  Score=42.77  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      -++|.|| |-.|.++|.+|+++|.+|+++++++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3888988 8999999999999999999999864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.31  E-value=0.065  Score=36.90  Aligned_cols=79  Identities=24%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.++|-.|+++|--.++..+++  |.+|+.++++++-.+...+.+....-.++.++..|..+.      ....+++|.+
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g------~~~~~pfD~I  149 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG------FPPKAPYDVI  149 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC------CGGGCCEEEE
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC------CcccCcceeE
Confidence            57799999999998888888877  467999999988777666666554446688888887531      1234689998


Q ss_pred             EecCCCC
Q 030328          116 VVNQGVF  122 (179)
Q Consensus       116 i~~ag~~  122 (179)
                      +.+++..
T Consensus       150 iv~~a~~  156 (215)
T d1jg1a_         150 IVTAGAP  156 (215)
T ss_dssp             EECSBBS
T ss_pred             Eeecccc
Confidence            8887754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.22  E-value=0.088  Score=35.71  Aligned_cols=77  Identities=21%  Similarity=0.266  Sum_probs=55.1

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      ..+++|+++|=-|+++|.   ++..++.+|+ +|++++.+++..+...+.+. ..+.+..++..|..+.         .+
T Consensus        42 ~~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~-~~~~~~~~~~~d~~~~---------~~  108 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLG-EFKGKFKVFIGDVSEF---------NS  108 (201)
T ss_dssp             TTSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTG-GGTTSEEEEESCGGGC---------CC
T ss_pred             cCCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHH-HcCCCceEEECchhhh---------CC
Confidence            345789999999998873   3444567786 69999999988776665543 3466777787776432         35


Q ss_pred             CCcEEEecCCC
Q 030328          111 PVDVLVVNQGV  121 (179)
Q Consensus       111 ~id~li~~ag~  121 (179)
                      ++|++|.|.-.
T Consensus       109 ~fD~Vi~nPP~  119 (201)
T d1wy7a1         109 RVDIVIMNPPF  119 (201)
T ss_dssp             CCSEEEECCCC
T ss_pred             cCcEEEEcCcc
Confidence            79999888743

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.018  Score=39.89  Aligned_cols=43  Identities=16%  Similarity=0.013  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      .+++||..|++.|   ..+..|+++|++|+.+|-+++..+...++.
T Consensus        45 ~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~   87 (229)
T d2bzga1          45 SGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQ   87 (229)
T ss_dssp             CSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence            6789999999887   458889999999999999998877665543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.13  E-value=0.012  Score=37.04  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .++++|.|+ |.||..+|..|.+.|.+|.++.+.+
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            478999998 9999999999999999999998865

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.08  E-value=0.03  Score=38.19  Aligned_cols=72  Identities=29%  Similarity=0.325  Sum_probs=51.2

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      ..++.||+||=.|+++|+   ++..++..|+. |+.+|.+++..+...+.     ..++.++.+|+.+.         .+
T Consensus        44 ~~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N-----~~~~~~~~~D~~~l---------~~  106 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRN-----CGGVNFMVADVSEI---------SG  106 (197)
T ss_dssp             HTSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHH-----CTTSEEEECCGGGC---------CC
T ss_pred             cCCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHc-----cccccEEEEehhhc---------CC
Confidence            346789999999999883   34557778864 99999998866544332     23467778887532         25


Q ss_pred             CCcEEEecCC
Q 030328          111 PVDVLVVNQG  120 (179)
Q Consensus       111 ~id~li~~ag  120 (179)
                      ++|++|-|.-
T Consensus       107 ~fD~Vi~NPP  116 (197)
T d1ne2a_         107 KYDTWIMNPP  116 (197)
T ss_dssp             CEEEEEECCC
T ss_pred             cceEEEeCcc
Confidence            7999998853

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.03  E-value=0.015  Score=38.03  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC--eEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA--RVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~--~v~~~~r~~   71 (179)
                      .||+++|.|| |..|..+|..|.+.+.  +|+++++++
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999 8999999999999885  688888765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.02  E-value=0.015  Score=41.69  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      +.|+|+|.|| |--|...|.+|+++|++|.++++++.
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5578999999 78899999999999999999998653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.92  E-value=0.06  Score=37.31  Aligned_cols=72  Identities=18%  Similarity=0.216  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .++++|=.|+++|   .++..|+++|++|+++|.++.-.+...+.... .+.++.++..|+.+..     ++  +.+|.+
T Consensus        41 ~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-~~~~i~~~~~d~~~l~-----~~--~~fD~I  109 (251)
T d1wzna1          41 EVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEIA-----FK--NEFDAV  109 (251)
T ss_dssp             CCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGCC-----CC--SCEEEE
T ss_pred             CCCEEEEeCCCCC---ccchhhcccceEEEEEeecccccccccccccc-ccccchheehhhhhcc-----cc--cccchH
Confidence            5678999999987   44667889999999999999877666665543 3556888888876532     11  368877


Q ss_pred             Eec
Q 030328          116 VVN  118 (179)
Q Consensus       116 i~~  118 (179)
                      +..
T Consensus       110 ~~~  112 (251)
T d1wzna1         110 TMF  112 (251)
T ss_dssp             EEC
T ss_pred             hhh
Confidence            764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.90  E-value=0.29  Score=35.51  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+|+++|=.+++.| |.++  .++..+.+|+.+|.+++.++...+....+.-..+.++..|..+.  .+.+.+..+++|.
T Consensus       144 ~~g~rVLDl~~gtG-~~s~--~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~--~~~~~~~~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFSYAG-GFAL--HLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL--LRRLEKEGERFDL  218 (318)
T ss_dssp             CCEEEEEEETCTTT-HHHH--HHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH--HHHHHHTTCCEEE
T ss_pred             hCCCeeeccCCCCc-HHHH--HHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHH--hhhhHhhhcCCCE
Confidence            47889998887765 3333  34556788999999999888777666543223577777776432  2334344467999


Q ss_pred             EEecCCC
Q 030328          115 LVVNQGV  121 (179)
Q Consensus       115 li~~ag~  121 (179)
                      ++.+.-.
T Consensus       219 Vi~DpP~  225 (318)
T d1wxxa2         219 VVLDPPA  225 (318)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCc
Confidence            9888643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.89  E-value=0.11  Score=36.64  Aligned_cols=73  Identities=27%  Similarity=0.337  Sum_probs=51.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ..++++|=.|+++|+   ++..+++.|++|+.+|.+++..+...+.... .+....++..|+.      ..+ ..+++|+
T Consensus       119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~-n~~~~~~~~~d~~------~~~-~~~~fD~  187 (254)
T d2nxca1         119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKR-NGVRPRFLEGSLE------AAL-PFGPFDL  187 (254)
T ss_dssp             CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-TTCCCEEEESCHH------HHG-GGCCEEE
T ss_pred             CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHH-cCCceeEEecccc------ccc-cccccch
Confidence            368899999999986   3445678899999999999988776665443 3555666666542      222 2357898


Q ss_pred             EEec
Q 030328          115 LVVN  118 (179)
Q Consensus       115 li~~  118 (179)
                      ++.|
T Consensus       188 V~an  191 (254)
T d2nxca1         188 LVAN  191 (254)
T ss_dssp             EEEE
T ss_pred             hhhc
Confidence            8866

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.77  E-value=0.039  Score=38.41  Aligned_cols=73  Identities=14%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      ..++++|=.|+++|.   ++..|+++|.+|+++|.+++-++...+.... .+..+.++..|+.+.+       ..+++|+
T Consensus        36 ~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~-~~~~v~~~~~d~~~~~-------~~~~fD~  104 (246)
T d1y8ca_          36 LVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRS-QGLKPRLACQDISNLN-------INRKFDL  104 (246)
T ss_dssp             CCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHH-TTCCCEEECCCGGGCC-------CSCCEEE
T ss_pred             CCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccc-cCccceeeccchhhhc-------ccccccc
Confidence            467889999999885   7889999999999999999877766554433 3556788888876531       1246887


Q ss_pred             EEec
Q 030328          115 LVVN  118 (179)
Q Consensus       115 li~~  118 (179)
                      ++..
T Consensus       105 i~~~  108 (246)
T d1y8ca_         105 ITCC  108 (246)
T ss_dssp             EEEC
T ss_pred             ccee
Confidence            7754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.65  E-value=0.13  Score=34.37  Aligned_cols=61  Identities=11%  Similarity=0.066  Sum_probs=42.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD   98 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~   98 (179)
                      +..+++|=.|++.|-   .+..|+++|++|+.+|.+++.++...+......-..+.+...|+.+
T Consensus        29 ~~~grvLDiGcG~G~---~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~   89 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGR---NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT   89 (198)
T ss_dssp             SCSCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT
T ss_pred             CCCCcEEEECCCCCH---HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccc
Confidence            356689999997663   5678889999999999999887766555443211234555556543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.62  E-value=0.29  Score=32.34  Aligned_cols=76  Identities=22%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .+.++|=.|+++|   .++.++++.+.+|+.+|.+++..+...+.+.... ..++.++.+|.      .+.......+|.
T Consensus        33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda------~~~~~~~~~~D~  103 (186)
T d1l3ia_          33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA------PEALCKIPDIDI  103 (186)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH------HHHHTTSCCEEE
T ss_pred             CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch------hhcccccCCcCE
Confidence            5778888898887   4455677788899999999998887777665432 24678888774      233334457888


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      ++.+.+
T Consensus       104 v~~~~~  109 (186)
T d1l3ia_         104 AVVGGS  109 (186)
T ss_dssp             EEESCC
T ss_pred             EEEeCc
Confidence            776644

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.59  E-value=0.03  Score=36.23  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=29.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLE   75 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~   75 (179)
                      ++-|.|. |.+|.++|+.|.++|++|++.+++.++..
T Consensus         2 kIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~   37 (152)
T d1i36a2           2 RVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPST   37 (152)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHH
T ss_pred             EEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHH
Confidence            4566666 99999999999999999999887765443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.59  E-value=0.016  Score=41.08  Aligned_cols=30  Identities=27%  Similarity=0.488  Sum_probs=27.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      ++|.|| |-.|.+.|.+|+++|.+|+++++.
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            788888 899999999999999999999885

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.43  E-value=0.09  Score=38.17  Aligned_cols=74  Identities=26%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHh-hcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQL-ATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .+||+||-.|+++|+   ++..+++.|+ +|+.++.++. .....+.... ....++.++..|..+.+      ....++
T Consensus        32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~------~~~~~~  101 (316)
T d1oria_          32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE------LPVEKV  101 (316)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC------CSSSCE
T ss_pred             CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc------ccccee
Confidence            479999999999885   5667888886 4999998764 3333332222 22345777777765531      012356


Q ss_pred             cEEEec
Q 030328          113 DVLVVN  118 (179)
Q Consensus       113 d~li~~  118 (179)
                      |+++..
T Consensus       102 D~ivs~  107 (316)
T d1oria_         102 DIIISE  107 (316)
T ss_dssp             EEEEEC
T ss_pred             EEEeee
Confidence            666553

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.29  E-value=0.045  Score=35.36  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=29.5

Q ss_pred             CcEEEEE-cCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFIT-GGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlIt-Ga~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ++.++|. .+++.+|.++|..|+++|++|.++.+.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4555554 45699999999999999999999988754

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=94.28  E-value=0.15  Score=34.69  Aligned_cols=60  Identities=17%  Similarity=0.092  Sum_probs=42.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRD   98 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~   98 (179)
                      .+++||=.|++.|.-   +..++++|++|+++|-+++-.+...+........++.+...|..+
T Consensus        15 ~~~rVLDiGcG~G~~---~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~   74 (231)
T d1vl5a_          15 GNEEVLDVATGGGHV---ANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ   74 (231)
T ss_dssp             SCCEEEEETCTTCHH---HHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred             CcCEEEEecccCcHH---HHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccc
Confidence            467899999998844   466788999999999999877665554443333456666666544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.021  Score=38.79  Aligned_cols=31  Identities=26%  Similarity=0.435  Sum_probs=27.9

Q ss_pred             cEEEEEcCCCchHHH-----HHHHHHHcCCeEEEEe
Q 030328           38 RHVFITGGSSGIGLA-----LAHQAAKEGARVSILA   68 (179)
Q Consensus        38 k~vlItGa~~~iG~~-----la~~l~~~g~~v~~~~   68 (179)
                      |++.|||.++|+|+.     +|+.|+++|.+|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            789999999999985     7888999999999987

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.022  Score=38.73  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=28.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|| |--|...|.+|+++|.+|.++.+++
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            788887 8889999999999999999999975

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.21  E-value=0.02  Score=34.94  Aligned_cols=40  Identities=13%  Similarity=0.106  Sum_probs=33.0

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ....+||+++|.|+ |.-|..+|..|++.+.+++...|+..
T Consensus        27 ~~~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          27 PELFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             GGGGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hhhcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            34579999999999 68899999999999888777766553

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.14  E-value=0.67  Score=33.52  Aligned_cols=81  Identities=19%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .++++|=.+++.|.   ++..++..|+ +|+.+|.+++..+...+....+. ..++.++..|..  +.++.+.+...++|
T Consensus       145 ~g~~VLDl~~g~G~---~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~--~~~~~~~~~~~~fD  219 (324)
T d2as0a2         145 PGDRVLDVFTYTGG---FAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF--EEMEKLQKKGEKFD  219 (324)
T ss_dssp             TTCEEEETTCTTTH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHHHHHTTCCEE
T ss_pred             CCCeeecccCcccc---hhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh--hhhHHHHhccCCCC
Confidence            47888888876543   2233456676 69999999998877766654432 235777777763  33444444456899


Q ss_pred             EEEecCCC
Q 030328          114 VLVVNQGV  121 (179)
Q Consensus       114 ~li~~ag~  121 (179)
                      ++|.+.-.
T Consensus       220 ~Vi~DpP~  227 (324)
T d2as0a2         220 IVVLDPPA  227 (324)
T ss_dssp             EEEECCCC
T ss_pred             chhcCCcc
Confidence            99887643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.13  E-value=0.023  Score=40.76  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=28.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-RVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~   71 (179)
                      .|+|.|| |-+|.++|.+|+++|. +|.+++++.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            5889998 8999999999999997 599998863

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.12  Score=32.47  Aligned_cols=76  Identities=13%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCC----------CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           36 KDRHVFITGGS----------SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        36 ~~k~vlItGa~----------~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      ..|++||.|++          ...+.+.++.|.+.|++++++..|++....-     .....++.  ...+ ..+++.++
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd-----~d~aD~lY--fePl-t~e~v~~I   77 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTD-----PEMADATY--IEPI-HWEVVRKI   77 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGC-----GGGSSEEE--CSCC-CHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcC-----hhhcceee--eecC-CHHHHHHH
Confidence            46889999985          2346678899999999999999998754311     11123333  2333 36788888


Q ss_pred             HHhhCCCcEEEecCC
Q 030328          106 LDEAGPVDVLVVNQG  120 (179)
Q Consensus       106 ~~~~~~id~li~~ag  120 (179)
                      +++- ++|.++-..|
T Consensus        78 i~~E-~pd~il~~~G   91 (127)
T d1a9xa3          78 IEKE-RPDAVLPTMG   91 (127)
T ss_dssp             HHHH-CCSEEECSSS
T ss_pred             HHHh-CcCCeEEEee
Confidence            8765 6888877766

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.78  E-value=0.1  Score=30.59  Aligned_cols=70  Identities=19%  Similarity=0.170  Sum_probs=43.4

Q ss_pred             cEEEEEcCCCchHH-HHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEE
Q 030328           38 RHVFITGGSSGIGL-ALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLV  116 (179)
Q Consensus        38 k~vlItGa~~~iG~-~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li  116 (179)
                      +++-+.|- +|+|- ++|+.|.++|++|...|+++...-   +.+.. .|..+.  . . .+.+.       ....|.+|
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t---~~L~~-~Gi~i~--~-g-h~~~~-------i~~~d~vV   65 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERT---AYLRK-LGIPIF--V-P-HSADN-------WYDPDLVI   65 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHHHH-TTCCEE--S-S-CCTTS-------CCCCSEEE
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhH---HHHHH-CCCeEE--e-e-ecccc-------cCCCCEEE
Confidence            34556665 66776 789999999999999998864322   23332 244332  1 1 11111       13689999


Q ss_pred             ecCCCCC
Q 030328          117 VNQGVFV  123 (179)
Q Consensus       117 ~~ag~~~  123 (179)
                      ...+...
T Consensus        66 ~SsAI~~   72 (89)
T d1j6ua1          66 KTPAVRD   72 (89)
T ss_dssp             ECTTCCT
T ss_pred             EecCcCC
Confidence            9888643

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.3  Score=33.49  Aligned_cols=81  Identities=17%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-----cCceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-----TGIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      .|.++|-.|+++|--.++..++.....+|+.++++++-.+...+.+...     ....+.+...|..+.      ....+
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~------~~~~~  149 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG------YAEEA  149 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC------CGGGC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc------cchhh
Confidence            5779999999999888888888877889999999998777665555421     123466666775421      12235


Q ss_pred             CCcEEEecCCCC
Q 030328          111 PVDVLVVNQGVF  122 (179)
Q Consensus       111 ~id~li~~ag~~  122 (179)
                      ++|.++.+++..
T Consensus       150 ~fD~I~~~~~~~  161 (224)
T d1i1na_         150 PYDAIHVGAAAP  161 (224)
T ss_dssp             CEEEEEECSBBS
T ss_pred             hhhhhhhhcchh
Confidence            789988887653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.51  E-value=0.62  Score=33.64  Aligned_cols=80  Identities=19%  Similarity=0.201  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      +++++|=..+.+|.   ++..++..|++|+.+|.+....+...+....+.  ...+.++..|..  +-+++..++..++|
T Consensus       132 ~~~rVLdlf~~tG~---~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~--~~l~~~~~~~~~fD  206 (309)
T d2igta1         132 RPLKVLNLFGYTGV---ASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM--KFIQREERRGSTYD  206 (309)
T ss_dssp             SCCEEEEETCTTCH---HHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH--HHHHHHHHHTCCBS
T ss_pred             CCCeEEEecCCCcH---HHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH--HhHHHHhhcCCCCC
Confidence            57788877666552   333456789999999999998877666554332  235778887764  33455555556899


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      ++|.+.-
T Consensus       207 ~IilDPP  213 (309)
T d2igta1         207 IILTDPP  213 (309)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9988743

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.50  E-value=0.034  Score=39.48  Aligned_cols=33  Identities=33%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .|+|.|| |-.|..+|..|+++|.+|.+++++++
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999 69999999999999999999999764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.44  E-value=0.035  Score=36.53  Aligned_cols=32  Identities=22%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILA   68 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~   68 (179)
                      ++++++|.|| |.+|..+|..|.+.|+++.++.
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEE
Confidence            4788999998 9999999999999998865443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.44  E-value=0.053  Score=38.10  Aligned_cols=35  Identities=29%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR   69 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r   69 (179)
                      ++++|+++|-|- |.+|..+|+.|.+.|++|+.++-
T Consensus        28 ~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          28 GIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeec
Confidence            579999999986 99999999999999999987653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.42  E-value=0.069  Score=38.53  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=32.7

Q ss_pred             CcCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec
Q 030328           32 RIPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR   69 (179)
Q Consensus        32 ~~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r   69 (179)
                      ...+++|+++|-|- |.+|..+|+.|.+.|++|+.++-
T Consensus        31 ~~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          31 TPGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             CSSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            34689999999998 89999999999999999987753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.043  Score=39.05  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      +.++|+|.|| |--|...|.+|+++|++|.+..++.
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4567999999 8889999999999999999987754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.17  E-value=0.65  Score=30.28  Aligned_cols=78  Identities=13%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             CcEEEEEcCCCchHHH-HHHHHHH-c----CCeEEEEecChhHHHHHHHHHHh---hcCceEEEEEeeCCCHHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLA-LAHQAAK-E----GARVSILARSGEKLEEAKQSIQL---ATGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~-la~~l~~-~----g~~v~~~~r~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      +-++.|.||++ .|.. +...+.. .    +-+++++|.++++++...+.+..   ..+........  +|.   ++.++
T Consensus         3 ~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~---~eal~   76 (167)
T d1u8xx1           3 SFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--TDP---EEAFT   76 (167)
T ss_dssp             CEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--SCH---HHHHS
T ss_pred             CceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--CCh---hhccC
Confidence            34677888855 4443 3333332 2    23799999999987755544432   22332222211  222   23333


Q ss_pred             hhCCCcEEEecCCCCC
Q 030328          108 EAGPVDVLVVNQGVFV  123 (179)
Q Consensus       108 ~~~~id~li~~ag~~~  123 (179)
                         .-|++|+.+|...
T Consensus        77 ---~AD~Vvitag~~~   89 (167)
T d1u8xx1          77 ---DVDFVMAHIRVGK   89 (167)
T ss_dssp             ---SCSEEEECCCTTH
T ss_pred             ---CCCEEEECCCcCC
Confidence               7899999999644

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.036  Score=40.00  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      -++|.|| |--|..+|++|+++|.+|.++.++..
T Consensus         3 dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            5789998 89999999999999999999998764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.04  E-value=0.27  Score=35.67  Aligned_cols=60  Identities=32%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHh-hcCceEEEEEeeCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQL-ATGIEVATYSADVRD   98 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~-~~~~~v~~~~~D~~~   98 (179)
                      .++++||-.|++.|+   ++..++++|+ +|++++.++. .+...+.... ....++.++..|+.+
T Consensus        37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~~~~~~~i~~i~~~~~~   98 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCHH-HHHHHHHHHHhCccccceEEEeehhh
Confidence            478999999999884   4667788887 5889998753 3333332222 224457777777654

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.44  Score=34.08  Aligned_cols=31  Identities=23%  Similarity=0.100  Sum_probs=25.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      .+=.-+||..|.++|+.+..+|+.|+++.+.
T Consensus        39 ~ItN~SSGk~G~alA~~~~~~Ga~V~li~g~   69 (290)
T d1p9oa_          39 FLDNFSSGRRGATSAEAFLAAGYGVLFLYRA   69 (290)
T ss_dssp             EEEECCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             EeCCCCchHHHHHHHHHHHHcCCEEEEEecC
Confidence            3333456789999999999999999988654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.93  E-value=0.047  Score=37.77  Aligned_cols=32  Identities=41%  Similarity=0.588  Sum_probs=28.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ++|.|| |.-|...|..|+++|.+|.+++++++
T Consensus         5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            788888 78999999999999999999998754

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.87  E-value=0.66  Score=29.50  Aligned_cols=76  Identities=16%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh-hCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE-AGP  111 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~-~~~  111 (179)
                      +.|+++|=.|+++|   +++-+.+.+|+ +|+.++.+++..+...+.+.... ..++..+..|..+      .++. .++
T Consensus        13 ~~g~~vlDl~~GtG---~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l~~~~~~   83 (152)
T d2esra1          13 FNGGRVLDLFAGSG---GLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AIDCLTGR   83 (152)
T ss_dssp             CCSCEEEEETCTTC---HHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HHHHBCSC
T ss_pred             CCCCeEEEcCCccC---HHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------cccccccc
Confidence            57999988888877   34446677887 59999999988776666554322 3457778877532      2233 357


Q ss_pred             CcEEEecC
Q 030328          112 VDVLVVNQ  119 (179)
Q Consensus       112 id~li~~a  119 (179)
                      .|+++.+.
T Consensus        84 fDiIf~DP   91 (152)
T d2esra1          84 FDLVFLDP   91 (152)
T ss_dssp             EEEEEECC
T ss_pred             cceeEech
Confidence            89887654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.80  E-value=0.18  Score=33.95  Aligned_cols=77  Identities=22%  Similarity=0.281  Sum_probs=55.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh--hCCCcEEE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE--AGPVDVLV  116 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~--~~~id~li  116 (179)
                      .+=+|-|+||...++.+.+ . +.+|+++|++++..+...+.+. ..+.++.++..++.+...   ..+.  ...+|.++
T Consensus        27 ~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~-~~~~r~~~~~~~f~~~~~---~~~~~~~~~vdgIl  100 (192)
T d1m6ya2          27 ILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLK-EFSDRVSLFKVSYREADF---LLKTLGIEKVDGIL  100 (192)
T ss_dssp             EEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTG-GGTTTEEEEECCGGGHHH---HHHHTTCSCEEEEE
T ss_pred             EEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhc-cccccccchhHHHhhHHH---HHHHcCCCCcceee
Confidence            3445666677777777766 3 4789999999998877766554 346678899988876543   4444  35789988


Q ss_pred             ecCCC
Q 030328          117 VNQGV  121 (179)
Q Consensus       117 ~~ag~  121 (179)
                      ..-|+
T Consensus       101 ~DlGv  105 (192)
T d1m6ya2         101 MDLGV  105 (192)
T ss_dssp             EECSC
T ss_pred             eccch
Confidence            88776

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=92.79  E-value=0.34  Score=33.32  Aligned_cols=75  Identities=19%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      .+.++|-.|+++|--.+   .|++.+.+|+.++.+++..+...+.+..  ...+.++..|....      ....+++|.+
T Consensus        70 ~g~~VLdIG~GsGy~ta---~La~l~~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g------~~~~~pfD~I  138 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTA---LIAEIVDKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLG------YEEEKPYDRV  138 (224)
T ss_dssp             TTCEEEEECCTTSHHHH---HHHHHSSEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGC------CGGGCCEEEE
T ss_pred             ccceEEEecCCCCHHHH---HHHHHhcccccccccHHHHHHHHHHHhc--ccccccccCchhhc------chhhhhHHHH
Confidence            57789999999886544   4556678999999998877655543332  34677777776431      1234679998


Q ss_pred             EecCCC
Q 030328          116 VVNQGV  121 (179)
Q Consensus       116 i~~ag~  121 (179)
                      +.+++.
T Consensus       139 iv~~a~  144 (224)
T d1vbfa_         139 VVWATA  144 (224)
T ss_dssp             EESSBB
T ss_pred             Hhhcch
Confidence            888764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.78  E-value=0.038  Score=38.72  Aligned_cols=32  Identities=34%  Similarity=0.533  Sum_probs=28.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      .|+|.|| |--|...|.+|+++|++|.++.+++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4889998 8899999999999999999998864

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=92.64  E-value=0.07  Score=37.77  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.3

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILA   68 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~   68 (179)
                      .++++|+++|.|. |.+|..+|+.|.+.|++|+.++
T Consensus        32 ~~l~g~~v~IQGf-GnVG~~~a~~L~e~Gakvvavs   66 (255)
T d1bgva1          32 DTLVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLS   66 (255)
T ss_dssp             CCSTTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEe
Confidence            4679999999995 9999999999999999988664

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.068  Score=38.48  Aligned_cols=32  Identities=28%  Similarity=0.563  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCchHH-----HHHHHHHHcCCeEEEEecC
Q 030328           38 RHVFITGGSSGIGL-----ALAHQAAKEGARVSILARS   70 (179)
Q Consensus        38 k~vlItGa~~~iG~-----~la~~l~~~g~~v~~~~r~   70 (179)
                      |+|+|++|++| |.     +++++|.++|++|..++..
T Consensus         1 kkili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            67888877655 55     6889999999999776543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=92.50  E-value=0.63  Score=32.92  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             cEEEEEcCCCch-HHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           38 RHVFITGGSSGI-GLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        38 k~vlItGa~~~i-G~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +.++-.|+++|+ +.+++ +  ..+++|+++|.+++.++-..+-..... ..++.....|+.+.     ..+..+++|++
T Consensus       112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~-----~~~~~~~fDlI  183 (271)
T d1nv8a_         112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-----FKEKFASIEMI  183 (271)
T ss_dssp             CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-----GGGGTTTCCEE
T ss_pred             cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc-----cccccCcccEE
Confidence            456656666664 44443 3  356899999999998776665544322 33566667776542     22334689999


Q ss_pred             EecCCCC
Q 030328          116 VVNQGVF  122 (179)
Q Consensus       116 i~~ag~~  122 (179)
                      |.|.-+.
T Consensus       184 VsNPPYI  190 (271)
T d1nv8a_         184 LSNPPYV  190 (271)
T ss_dssp             EECCCCB
T ss_pred             EEccccc
Confidence            9997543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=92.41  E-value=0.44  Score=32.43  Aligned_cols=59  Identities=15%  Similarity=0.014  Sum_probs=41.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR   97 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~   97 (179)
                      .+.+||=.|+++|.   ++..|++++++|+.+|-++.-++...+......-..+.++..|..
T Consensus        16 ~~~rILDiGcGtG~---~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~   74 (234)
T d1xxla_          16 AEHRVLDIGAGAGH---TALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE   74 (234)
T ss_dssp             TTCEEEEESCTTSH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT
T ss_pred             CCCEEEEeCCcCcH---HHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccc
Confidence            47789999999884   456778889999999999887665555444332234666666654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.37  E-value=0.054  Score=36.96  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=28.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-eEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-RVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~   71 (179)
                      .|+|.|| |--|...|.+|+++|. +|.++.+++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            5889998 8999999999999997 599998865

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.079  Score=37.36  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCchHHHH-----HHHHHHcCCeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLAL-----AHQAAKEGARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~l-----a~~l~~~g~~v~~~~r~~~   72 (179)
                      .+++++|+.+-||+|+..     |..|+++|.+|.++|-+++
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            466777777799999975     8899999999999999865

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.19  E-value=0.069  Score=38.21  Aligned_cols=32  Identities=28%  Similarity=0.553  Sum_probs=28.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      -++|.|+ |..|...|.+++++|++|+++++.+
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3899998 8999999999999999999998754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.12  E-value=0.44  Score=28.84  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH---cCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAK---EGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~---~g~~v~~~~r~~~   72 (179)
                      .|+++|.|| |.+|..+|..|.+   .|.+|.++.|.+.
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence            478999998 8999999987665   4889999988653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.02  E-value=0.34  Score=29.46  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH---cCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAK---EGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~---~g~~v~~~~r~~~   72 (179)
                      .++++|.|| |.+|..+|..|.+   +|.+|.++.+.+.
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            478999998 9999999976665   4567999988653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.78  E-value=0.11  Score=35.45  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCchHHH-----HHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLA-----LAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~-----la~~l~~~g~~v~~~~r~~   71 (179)
                      .+|++.|+|+-||.|+.     +|..|+++|.+|.++|-+.
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            36889999999999984     6788889999999999653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.75  E-value=0.08  Score=36.87  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEK   73 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~   73 (179)
                      -++|.|| |.-|...|.+++++|.+|.+++++++.
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4888998 899999999999999999999998754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.40  E-value=0.34  Score=29.94  Aligned_cols=76  Identities=12%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCC----------chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH
Q 030328           36 KDRHVFITGGSS----------GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        36 ~~k~vlItGa~~----------~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      ..|++||.|++.          .-+.+.++.|.+.|++++++..|++....       .+...-..+...++ .+.+.++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVst-------d~d~aD~lYfeplt-~e~v~~I   74 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVST-------DYDTSDRLYFEPVT-LEDVLEI   74 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTT-------STTSSSEEECCCCS-HHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhc-------ChhhcCceEEccCC-HHHHHHH
Confidence            467899999852          44668889999999999999999875431       11111223333443 6778888


Q ss_pred             HHhhCCCcEEEecCC
Q 030328          106 LDEAGPVDVLVVNQG  120 (179)
Q Consensus       106 ~~~~~~id~li~~ag  120 (179)
                      +++- ++|.++-.-|
T Consensus        75 i~~E-~p~~ii~~~G   88 (121)
T d1a9xa4          75 VRIE-KPKGVIVQYG   88 (121)
T ss_dssp             HHHH-CCSEEECSSS
T ss_pred             HHHh-CCCEEEeehh
Confidence            7765 5777776665

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.30  E-value=0.78  Score=31.35  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH-cC----CeEEEEecChhHHHHHHHHHHh-----hcCceEEEEEeeCCCHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAK-EG----ARVSILARSGEKLEEAKQSIQL-----ATGIEVATYSADVRDFDAVKTA  105 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~-~g----~~v~~~~r~~~~~~~~~~~~~~-----~~~~~v~~~~~D~~~~~~v~~~  105 (179)
                      .+.++|..|+++|--.++..+++. .|    .+|+.++++++-.+...+.+..     ..-..+.+...|..+      -
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~------~  153 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK------G  153 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG------C
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc------c
Confidence            578999999999988888777764 44    4799999998766554443321     112357777787643      1


Q ss_pred             HHhhCCCcEEEecCCCC
Q 030328          106 LDEAGPVDVLVVNQGVF  122 (179)
Q Consensus       106 ~~~~~~id~li~~ag~~  122 (179)
                      ....+++|.++.+++..
T Consensus       154 ~~~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         154 YPPNAPYNAIHVGAAAP  170 (223)
T ss_dssp             CGGGCSEEEEEECSCBS
T ss_pred             cccccceeeEEEEeech
Confidence            22346899888888753

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.84  Score=29.26  Aligned_cols=45  Identities=18%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEe--cChhHHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKE--GARVSILA--RSGEKLEEAKQSI   81 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~~~~~   81 (179)
                      .|++.|-|++|.||.....-..+.  .++|+...  ++.+.+.+...++
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f   49 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEF   49 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHH
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHH
Confidence            368999999999999998877764  47776543  4444444444443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.25  E-value=1.2  Score=28.91  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHH-HHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTA-LDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~-~~~~~~id~  114 (179)
                      +++++|=.|+++|.   ++-+++++|++++.++.+++..+...+.+... +.......   .+.+..... .....++|+
T Consensus        41 ~g~~vLDl~~G~G~---~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~-~~~~~v~~---~~~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          41 RRGRFLDPFAGSGA---VGLEAASEGWEAVLVEKDPEAVRLLKENVRRT-GLGARVVA---LPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCH---HHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH-TCCCEEEC---SCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeccccch---hhhhhhhccchhhhcccCHHHHhhhhHHHHhh-ccccceee---eehhcccccccccCCccce
Confidence            67788877777663   45567789999999999999887766655432 33323322   233332222 222357899


Q ss_pred             EEecC
Q 030328          115 LVVNQ  119 (179)
Q Consensus       115 li~~a  119 (179)
                      ++.+.
T Consensus       114 If~DP  118 (171)
T d1ws6a1         114 AFMAP  118 (171)
T ss_dssp             EEECC
T ss_pred             eEEcc
Confidence            87764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.093  Score=37.59  Aligned_cols=31  Identities=29%  Similarity=0.422  Sum_probs=27.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      |+|.|| |--|...|.+|+++|.+|.++.++.
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            678888 7889999999999999999998754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.18  E-value=0.19  Score=32.39  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecCh
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSG   71 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~   71 (179)
                      ..+++++|.|+ |..|...|..+.++|++ |+++.|++
T Consensus        43 ~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            34667888877 89999999999999987 67887764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.09  E-value=0.75  Score=29.47  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEe--cChhHHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKE--GARVSILA--RSGEKLEEAKQSI   81 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~~~~~   81 (179)
                      -|++.|-|++|.||.....-+.+.  .++|++..  ++-+.+.+...++
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef   50 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRT   50 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhh
Confidence            378999999999999998888654  57776544  4444444444433

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.03  E-value=0.86  Score=30.05  Aligned_cols=76  Identities=17%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh--cCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA--TGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..++++|=.|+++|   .++..+++.+.+|+++|.++...+...+.+...  .+.++.+...|..+.  +    + -+.+
T Consensus        51 ~~~~~VLDiGcG~G---~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--~----~-~~~f  120 (194)
T d1dusa_          51 DKDDDILDLGCGYG---VIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--V----K-DRKY  120 (194)
T ss_dssp             CTTCEEEEETCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--C----T-TSCE
T ss_pred             CCCCeEEEEeecCC---hhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh--h----c-cCCc
Confidence            35789999999887   445677788899999999988777666655432  234578888887542  1    1 2468


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |.++.|.-
T Consensus       121 D~Ii~~~p  128 (194)
T d1dusa_         121 NKIITNPP  128 (194)
T ss_dssp             EEEEECCC
T ss_pred             eEEEEccc
Confidence            98887653

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.02  E-value=0.81  Score=29.84  Aligned_cols=78  Identities=14%  Similarity=0.185  Sum_probs=45.4

Q ss_pred             CcEEEEEcCCCchHHHH--HHHHHHc----CCeEEEEecChhHHHHHHHHHHh---hcCceEEEEEeeCCCHHHHHHHHH
Q 030328           37 DRHVFITGGSSGIGLAL--AHQAAKE----GARVSILARSGEKLEEAKQSIQL---ATGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~l--a~~l~~~----g~~v~~~~r~~~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      +.++.|.|| |.+|...  ...++..    +-+++++|.++++++.....+..   ..+........  +|.   ++.++
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~--td~---~eaL~   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT--MNL---DDVII   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE--SCH---HHHHT
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe--CCh---hhccc
Confidence            346788887 6677543  3334422    35899999999887655444332   22333332221  232   33343


Q ss_pred             hhCCCcEEEecCCCCC
Q 030328          108 EAGPVDVLVVNQGVFV  123 (179)
Q Consensus       108 ~~~~id~li~~ag~~~  123 (179)
                         ..|++++.++...
T Consensus        76 ---dad~Vv~~~~~g~   88 (171)
T d1obba1          76 ---DADFVINTAMVGG   88 (171)
T ss_dssp             ---TCSEEEECCCTTH
T ss_pred             ---CCCeEeeeccccc
Confidence               6899999987643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=91.01  E-value=1.9  Score=30.94  Aligned_cols=80  Identities=14%  Similarity=0.067  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhhc--CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLAT--GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      +|+++|=..+..| |.  +..++..|+ +|+.+|.+++..+...+....+.  ..++.++..|..  +.++...++..++
T Consensus       144 ~g~~VLdlf~~~G-~~--sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~--~~l~~~~~~~~~f  218 (317)
T d2b78a2         144 AGKTVLNLFSYTA-AF--SVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF--DYFKYARRHHLTY  218 (317)
T ss_dssp             BTCEEEEETCTTT-HH--HHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH--HHHHHHHHTTCCE
T ss_pred             CCCceeecCCCCc-HH--HHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH--HHHHHHHhhcCCC
Confidence            6888988776655 22  233556787 59999999988776666554332  235778888873  3445555555689


Q ss_pred             cEEEecCC
Q 030328          113 DVLVVNQG  120 (179)
Q Consensus       113 d~li~~ag  120 (179)
                      |++|...-
T Consensus       219 D~Ii~DPP  226 (317)
T d2b78a2         219 DIIIIDPP  226 (317)
T ss_dssp             EEEEECCC
T ss_pred             CEEEEcCh
Confidence            99888753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.13  Score=29.38  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      |++.|.|+ |-+|+-++..-.+.|.++.+.+-+++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            78899998 89999999999999999999987654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.93  E-value=1.8  Score=30.44  Aligned_cols=76  Identities=14%  Similarity=0.230  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHh----------hcCceEEEEEeeCCCHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQL----------ATGIEVATYSADVRDFDAVKT  104 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~----------~~~~~v~~~~~D~~~~~~v~~  104 (179)
                      +.+.+||.|+++|.   .++++.+.+ -+|.+++-+++=.+-..+-+..          ....++..+..|..      +
T Consensus        72 ~p~~vLiiG~G~G~---~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~------~  142 (276)
T d1mjfa_          72 KPKRVLVIGGGDGG---TVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGF------E  142 (276)
T ss_dssp             CCCEEEEEECTTSH---HHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHH------H
T ss_pred             CCceEEEecCCchH---HHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHH------H
Confidence            56789999998763   334444444 4688898887644433322211          12346777766642      2


Q ss_pred             HHHhhCCCcEEEecCC
Q 030328          105 ALDEAGPVDVLVVNQG  120 (179)
Q Consensus       105 ~~~~~~~id~li~~ag  120 (179)
                      .++..++.|++|...-
T Consensus       143 ~l~~~~~yDvIi~D~~  158 (276)
T d1mjfa_         143 FIKNNRGFDVIIADST  158 (276)
T ss_dssp             HHHHCCCEEEEEEECC
T ss_pred             HHhccCCCCEEEEeCC
Confidence            2233456888777553

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.85  E-value=0.18  Score=33.70  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=29.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEA   77 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   77 (179)
                      ++.|.| .|.+|..+|..++ +|++|+++|-+++..+..
T Consensus         2 kI~ViG-lG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l   38 (196)
T d1dlja2           2 KIAVAG-SGYVGLSLGVLLS-LQNEVTIVDILPSKVDKI   38 (196)
T ss_dssp             EEEEEC-CSHHHHHHHHHHT-TTSEEEEECSCHHHHHHH
T ss_pred             EEEEEC-CChhHHHHHHHHH-CCCcEEEEECCHHHHHHH
Confidence            466677 5999999998665 799999999998765544

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.78  E-value=0.27  Score=32.25  Aligned_cols=77  Identities=17%  Similarity=0.084  Sum_probs=41.9

Q ss_pred             EEEEEcCC-CchHHHHHHHHHHcC----CeEEEEecChhH--HHHHHHHH---HhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           39 HVFITGGS-SGIGLALAHQAAKEG----ARVSILARSGEK--LEEAKQSI---QLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        39 ~vlItGa~-~~iG~~la~~l~~~g----~~v~~~~r~~~~--~~~~~~~~---~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      ++.|.||+ .+.+.+++.-+....    -+++++|.+++.  ++......   ....+.....  ...+|.   .+.++ 
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~--~~~td~---~~al~-   76 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEI--HLTLDR---RRALD-   76 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEE--EEESCH---HHHHT-
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCcee--eecCCc---hhhcC-
Confidence            56777874 466667766665432    378999988753  33222111   1112232222  233443   22333 


Q ss_pred             hCCCcEEEecCCCCC
Q 030328          109 AGPVDVLVVNQGVFV  123 (179)
Q Consensus       109 ~~~id~li~~ag~~~  123 (179)
                        .-|++|+.+|...
T Consensus        77 --gaDvVv~ta~~~~   89 (169)
T d1s6ya1          77 --GADFVTTQFRVGG   89 (169)
T ss_dssp             --TCSEEEECCCTTH
T ss_pred             --CCCEEEEccccCC
Confidence              6799999999654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.73  E-value=0.28  Score=34.82  Aligned_cols=43  Identities=19%  Similarity=0.146  Sum_probs=33.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      .+++||=.|++.|.   ++..|+++|++|+.+|.+++-++...+..
T Consensus        56 ~~~~vLD~GcG~G~---~~~~la~~g~~v~gvD~S~~ml~~A~~~~   98 (292)
T d1xvaa_          56 GCHRVLDVACGTGV---DSIMLVEEGFSVTSVDASDKMLKYALKER   98 (292)
T ss_dssp             TCCEEEESSCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCcH---HHHHHHHcCCeeeeccCchHHHHHHHHHH
Confidence            36789999998885   46677889999999999998766555443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.49  E-value=0.16  Score=35.21  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=28.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGA-RVSILARSGE   72 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~   72 (179)
                      .|+|.|| |--|..+|..|.++|. +|.+..++++
T Consensus         3 ~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            5889998 8899999999999995 7888888653

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.49  E-value=1.5  Score=28.76  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=51.8

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ..|+++|=..|++|   ++..+.+++|++ |+.++.+.+..+...+.+.... ...+..+..|..  +.+++..+...++
T Consensus        40 ~~~~~vLDlfaGsG---~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~--~~l~~~~~~~~~f  114 (182)
T d2fhpa1          40 FDGGMALDLYSGSG---GLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN--RALEQFYEEKLQF  114 (182)
T ss_dssp             CSSCEEEETTCTTC---HHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH--HHHHHHHHTTCCE
T ss_pred             cCCCEEEEcccccc---cccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch--hhhhhhcccCCCc
Confidence            46788776666554   334456678886 9999999988777666554332 335777777763  2344444444578


Q ss_pred             cEEEecC
Q 030328          113 DVLVVNQ  119 (179)
Q Consensus       113 d~li~~a  119 (179)
                      |+++...
T Consensus       115 DlIflDP  121 (182)
T d2fhpa1         115 DLVLLDP  121 (182)
T ss_dssp             EEEEECC
T ss_pred             ceEEech
Confidence            9887554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.47  E-value=0.11  Score=37.41  Aligned_cols=31  Identities=42%  Similarity=0.605  Sum_probs=28.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|+ |.-|...|.+++++|++|+++.+.+
T Consensus        26 VvVIG~-G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGS-GGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECS-SHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            888888 8899999999999999999998754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.41  E-value=0.23  Score=33.54  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ..++||+|+|.|+ |--|..+|.++++.+++++...|+.
T Consensus        28 ~~~~gK~V~VvG~-G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGT-GSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECC-SHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECC-CccHHHHHHHHHhhhcccccccccc
Confidence            4579999999998 5679999999999999988877664

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.084  Score=35.03  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      +++.++|.|+ |..|...|..+++.|.+|+++++..
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEeec
Confidence            5678999998 8899999999999999999998643

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.19  E-value=0.14  Score=34.75  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCchHHH-----HHHHHHHcCCeEEEEecCh
Q 030328           38 RHVFITGGSSGIGLA-----LAHQAAKEGARVSILARSG   71 (179)
Q Consensus        38 k~vlItGa~~~iG~~-----la~~l~~~g~~v~~~~r~~   71 (179)
                      |++.|+++-||.|+.     +|..|+++|.+|.++|-+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            789999999999974     6778899999999998764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.06  E-value=0.14  Score=36.93  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=28.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      -|+|.|+ |..|...|.+++++|++|+++.+.+
T Consensus        21 DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGA-GSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4888888 8999999999999999999998753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.95  E-value=0.098  Score=34.83  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      +++.++|.|| |..|...|..+++.|.+++++++.
T Consensus         4 ~~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           4 HNTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ccceEEEECC-CHHHHHHHHHHHHcCCcEEEEEee
Confidence            5688999999 789999999999999999998754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.83  E-value=0.16  Score=36.01  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCchHHH-----HHHHHHHcCCeEEEEecChh
Q 030328           37 DRHVFITGGSSGIGLA-----LAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~-----la~~l~~~g~~v~~~~r~~~   72 (179)
                      .|++.|.| =||.|+.     +|..|+++|.+|.++|-+++
T Consensus         2 Mr~Iaisg-KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYG-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            46777887 7999986     68889999999999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.72  E-value=0.18  Score=36.29  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      +.-.|+|.|| |--|.+.|.+|.++|.++.+.++++
T Consensus         6 ~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            4456999999 8999999999999999999998764

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.63  E-value=1.5  Score=27.51  Aligned_cols=36  Identities=11%  Similarity=0.068  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCC---CchHHHHHHHHHHcCCeEEEEecCh
Q 030328           36 KDRHVFITGGS---SGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~---~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      +.|++.|.|||   +..|..+.+.|.+.|++|+.+..+.
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~   56 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY   56 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcc
Confidence            57899999999   6799999999999999998886553

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=89.46  E-value=1.2  Score=31.02  Aligned_cols=60  Identities=10%  Similarity=0.068  Sum_probs=40.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRD   98 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~   98 (179)
                      .+.++|=.|++.|.   ++..|+++ |++|+++|-++...+...+..... ...++.+..+|..+
T Consensus        67 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~  128 (282)
T d2o57a1          67 RQAKGLDLGAGYGG---AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  128 (282)
T ss_dssp             TTCEEEEETCTTSH---HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             CCCEEEEeCCCCcH---HHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccc
Confidence            57899999998773   45556654 899999999988766555544322 12346666666543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.28  E-value=0.18  Score=35.31  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=28.8

Q ss_pred             cEEEEEcCCCchHHH-----HHHHHHHcCCeEEEEecChh
Q 030328           38 RHVFITGGSSGIGLA-----LAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        38 k~vlItGa~~~iG~~-----la~~l~~~g~~v~~~~r~~~   72 (179)
                      |+|.|+| -||+|+.     +|..|+++|.+|.++|.+++
T Consensus         2 r~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            6788898 8999985     56689999999999999864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.14  E-value=1.4  Score=29.04  Aligned_cols=74  Identities=22%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             EcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEEEecCCCC
Q 030328           43 TGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVLVVNQGVF  122 (179)
Q Consensus        43 tGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~li~~ag~~  122 (179)
                      .-|+-|-|.+ .+.+++++.+|+++|++++..+...+ .   ...++..+..++++.+...+-. ..+.+|.++..-|+.
T Consensus        23 vD~T~G~GGh-s~~iL~~~~~viaiD~D~~ai~~a~~-~---~~~~~~~~~~~f~~~~~~l~~~-~~~~vdgIl~DLGvS   96 (182)
T d1wg8a2          23 VDATLGGAGH-ARGILERGGRVIGLDQDPEAVARAKG-L---HLPGLTVVQGNFRHLKRHLAAL-GVERVDGILADLGVS   96 (182)
T ss_dssp             EETTCTTSHH-HHHHHHTTCEEEEEESCHHHHHHHHH-T---CCTTEEEEESCGGGHHHHHHHT-TCSCEEEEEEECSCC
T ss_pred             EEeCCCCcHH-HHHHhcccCcEEEEhhhhhHHHHHhh-c---cccceeEeehHHHHHHHHHHHc-CCCccCEEEEEccCC
Confidence            4455555555 45556677899999999987655433 1   2346788888887754432222 135789988887763

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.12  E-value=0.19  Score=33.72  Aligned_cols=31  Identities=32%  Similarity=0.478  Sum_probs=27.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|| |..|.+.|..+++.|.+|.++++++
T Consensus         6 vvVIGg-GpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGG-GPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            678888 7889999999999999999998764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.94  E-value=0.21  Score=36.39  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=26.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEec
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILAR   69 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r   69 (179)
                      |+|+|+ |.-|..+|.+|+++|.+|.++.+
T Consensus         5 VIVVGs-G~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           5 AVVIGT-GYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEeCc-CHHHHHHHHHHHHCcCeEEEEec
Confidence            677777 78899999999999999999987

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=88.58  E-value=0.52  Score=33.40  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             CcEEEEEcCCC-chHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcEE
Q 030328           37 DRHVFITGGSS-GIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDVL  115 (179)
Q Consensus        37 ~k~vlItGa~~-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~l  115 (179)
                      +.+++=.|+++ .||.+++.++  ..++|+++|.+++.++...+......-.++.++..|+.+.-      . ..++|++
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~--p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~------~-~~~fDlI  179 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL------A-GQQFAMI  179 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG------T-TCCEEEE
T ss_pred             ccceeeeehhhhHHHHHHHhhC--CcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc------C-CCceeEE
Confidence            34566666664 4555565543  35789999999998776665554332235888888875431      1 2479999


Q ss_pred             EecCCCC
Q 030328          116 VVNQGVF  122 (179)
Q Consensus       116 i~~ag~~  122 (179)
                      |.|.-+.
T Consensus       180 vsNPPYi  186 (274)
T d2b3ta1         180 VSNPPYI  186 (274)
T ss_dssp             EECCCCB
T ss_pred             Eecchhh
Confidence            9996543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=88.54  E-value=0.65  Score=31.39  Aligned_cols=43  Identities=12%  Similarity=0.186  Sum_probs=33.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHH
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQS   80 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~   80 (179)
                      .++++||=.|++.|.   +++.|+++|++|+++|-+++..+...+.
T Consensus        19 ~~~~~VLDiGcG~G~---~~~~l~~~g~~v~giD~s~~~i~~a~~~   61 (225)
T d2p7ia1          19 FRPGNLLELGSFKGD---FTSRLQEHFNDITCVEASEEAISHAQGR   61 (225)
T ss_dssp             CCSSCEEEESCTTSH---HHHHHTTTCSCEEEEESCHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCcH---HHHHHHHcCCeEEEEeCcHHHhhhhhcc
Confidence            467789999998873   4577888999999999998876655443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.53  E-value=0.2  Score=35.28  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecCh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSG   71 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~   71 (179)
                      ...-++|.|| |.-|...|.+|+++ |.+|.++++++
T Consensus        32 ~e~DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4556999999 89999999999974 99999999875

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=88.50  E-value=0.17  Score=36.40  Aligned_cols=32  Identities=25%  Similarity=0.412  Sum_probs=27.8

Q ss_pred             EEEEcCCCchHHHHHHHHHH-----cCCeEEEEecChh
Q 030328           40 VFITGGSSGIGLALAHQAAK-----EGARVSILARSGE   72 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~-----~g~~v~~~~r~~~   72 (179)
                      |+|+|| |-.|..+|..|++     +|.+|.++++++.
T Consensus        10 V~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1          10 VLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             EEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            788998 8999999999974     6999999998753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=88.48  E-value=1.2  Score=30.88  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCch-HHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGI-GLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~i-G~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      .|.++|=.|+++|- ...+|+.+.. +.+|+.++++++.++...+.+.... ...+.+...|+.+.      +. -..+|
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~------~~-~~~fD  156 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF------IS-DQMYD  156 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC------CC-SCCEE
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc------cc-cceee
Confidence            47899999998774 4455555443 4589999999998887777665432 34677788887652      11 13578


Q ss_pred             EEEecC
Q 030328          114 VLVVNQ  119 (179)
Q Consensus       114 ~li~~a  119 (179)
                      .++.+.
T Consensus       157 ~V~ld~  162 (250)
T d1yb2a1         157 AVIADI  162 (250)
T ss_dssp             EEEECC
T ss_pred             eeeecC
Confidence            777653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.23  Score=33.31  Aligned_cols=31  Identities=23%  Similarity=0.375  Sum_probs=27.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|| |..|...|..+++.|.+|.++++++
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            678888 8999999999999999999998863

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.43  E-value=1.9  Score=27.20  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSI   81 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   81 (179)
                      ++-+.|- |.+|..+|++|.+.|+.+ ..+|+.++.++..++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~   42 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF   42 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHH
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHc
Confidence            3566777 999999999999888754 6778777666555543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.35  Score=30.33  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH----HcCCeEEEEecCh
Q 030328           37 DRHVFITGGSSGIGLALAHQAA----KEGARVSILARSG   71 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~----~~g~~v~~~~r~~   71 (179)
                      .|+++|.|| |.+|-.+|..|+    +.|.+|.++.+++
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            678999988 899999998886    4689999988755

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.29  E-value=0.73  Score=30.12  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHc-CCeEE-EEecChhHHHHHHHH
Q 030328           39 HVFITGGSSGIGLALAHQAAKE-GARVS-ILARSGEKLEEAKQS   80 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~-g~~v~-~~~r~~~~~~~~~~~   80 (179)
                      ++.|.|+ |.+|+..++.+... +++++ ++|+++++.++..++
T Consensus         3 ki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~   45 (184)
T d1ydwa1           3 RIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA   45 (184)
T ss_dssp             EEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH
T ss_pred             EEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhc
Confidence            5778887 68999999888765 57766 567887766655443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.19  E-value=0.23  Score=35.84  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChh
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGE   72 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~   72 (179)
                      .-|+|+|.|| |--|.+.|..|+++|  .+|++..|+..
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3478999998 788999999998876  58999988753

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.10  E-value=0.042  Score=37.59  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeE
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARV   64 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v   64 (179)
                      +|+|.|| |-+|...|.+|+++|.+|
T Consensus         2 kV~VIGa-Gi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           2 RVVVIGA-GVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECc-hHHHHHHHHHHHHCCCCc
Confidence            5889999 899999999999999764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.96  E-value=0.44  Score=33.10  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=29.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEec
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAK-EGARVSILAR   69 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r   69 (179)
                      ++++|+++|-|- |.+|.++|+.|.+ .|++|+.++-
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeeccc
Confidence            479999999998 7899999999986 5999876643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.80  E-value=0.36  Score=30.72  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC---CeEEEEecC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG---ARVSILARS   70 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g---~~v~~~~r~   70 (179)
                      .++.|.||+|..|+.+.+.|.+++   .++..+..+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~   38 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA   38 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence            368999999999999999998765   346555444

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.73  E-value=2.3  Score=27.24  Aligned_cols=75  Identities=11%  Similarity=-0.020  Sum_probs=41.8

Q ss_pred             EEEEEcCCCchHHHHHHHHH-Hc-----CCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           39 HVFITGGSSGIGLALAHQAA-KE-----GARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~-~~-----g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      ++.|.||++ +|...+.... +.     +.++.++|.++++++...+............ ... ++.   ++.   ....
T Consensus         2 KIaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~-~~t-~~~---~~~---l~~a   72 (162)
T d1up7a1           2 RIAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKV-LIS-DTF---EGA---VVDA   72 (162)
T ss_dssp             EEEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEE-EEC-SSH---HHH---HTTC
T ss_pred             EEEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceE-EEe-cCc---ccc---cCCC
Confidence            578889854 6766664422 21     3579999999987765433222211222111 111 222   222   3368


Q ss_pred             cEEEecCCCC
Q 030328          113 DVLVVNQGVF  122 (179)
Q Consensus       113 d~li~~ag~~  122 (179)
                      |++|+.+|..
T Consensus        73 DvVVita~~~   82 (162)
T d1up7a1          73 KYVIFQFRPG   82 (162)
T ss_dssp             SEEEECCCTT
T ss_pred             CEEEEecccC
Confidence            9999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.65  E-value=0.28  Score=31.85  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=26.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      ++|.|| |..|...|..+++.|.++.+++++
T Consensus         4 ViIIGg-GpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGS-GPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCeEEEEEEe
Confidence            678887 899999999999999999999864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=87.53  E-value=1.2  Score=30.52  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=49.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCC-eEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeCCCHHHHHHHHHhhCCCc
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGA-RVSILARSGEKLEEAKQSIQLA-TGIEVATYSADVRDFDAVKTALDEAGPVD  113 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~v~~~~~~~~~id  113 (179)
                      ++++||=.|++.|-   .+..+++.|. +|+++|.+++..+...+..... ....+.+..+|.....     +...+.+|
T Consensus        24 ~~~~VLDlGCG~G~---~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-----~~~~~~fD   95 (252)
T d1ri5a_          24 RGDSVLDLGCGKGG---DLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-----MDLGKEFD   95 (252)
T ss_dssp             TTCEEEEETCTTTT---THHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-----CCCSSCEE
T ss_pred             CcCEEEEecccCcH---HHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc-----ccccccce
Confidence            57899999998762   3456677775 6999999999877766554322 2346777888864321     11123577


Q ss_pred             EEEecCC
Q 030328          114 VLVVNQG  120 (179)
Q Consensus       114 ~li~~ag  120 (179)
                      +++.+-+
T Consensus        96 ~V~~~~~  102 (252)
T d1ri5a_          96 VISSQFS  102 (252)
T ss_dssp             EEEEESC
T ss_pred             EEEEcce
Confidence            7665543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.37  E-value=0.25  Score=35.49  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=27.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|+ |.-|...|..++++|++|+++.+..
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEecCC
Confidence            888887 8899999999999999999998753

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=87.35  E-value=1.2  Score=32.89  Aligned_cols=81  Identities=15%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh----HHH-HHHHHHHhhcCceEEEEEeeCCCHHHHHHHHH
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE----KLE-EAKQSIQLATGIEVATYSADVRDFDAVKTALD  107 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~----~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~  107 (179)
                      .++.|-+||=.+ ...-|-..++.|++.||+|+=+.+...    +.. ......    +..-..+..|+.+++..+.+.+
T Consensus         7 gPL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~----n~~K~si~ldl~~~~G~~~~~~   81 (402)
T d1xk7a1           7 GPLAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLS----RRNLHALSLNIFKDEGREAFLK   81 (402)
T ss_dssp             STTTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHH----TTTCEEEEECTTSHHHHHHHHH
T ss_pred             cCCCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHh----CCCCeEEEEeCcCHHHHHHHHH
Confidence            467777776444 355588889999999999998875331    111 111111    2223568889999988655544


Q ss_pred             hhCCCcEEEec
Q 030328          108 EAGPVDVLVVN  118 (179)
Q Consensus       108 ~~~~id~li~~  118 (179)
                      -....|++|.|
T Consensus        82 Lv~~aDv~i~n   92 (402)
T d1xk7a1          82 LMETTDIFIEA   92 (402)
T ss_dssp             HHTTCSEEEEE
T ss_pred             HHhhcCCceee
Confidence            45677888876

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.30  E-value=2.4  Score=27.10  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEec
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILAR   69 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r   69 (179)
                      +++|+++++.|..+.+..+++..+...|+++.++.-
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P   36 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATP   36 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecc
Confidence            368999999999999999999999999999887764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.24  E-value=0.32  Score=32.74  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=28.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ++|.|| |.-|...|..+++.|.+|.+++++++
T Consensus         8 viVIG~-GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGG-GPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            688888 77899999999999999999997643

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=87.18  E-value=0.12  Score=32.99  Aligned_cols=76  Identities=16%  Similarity=0.007  Sum_probs=44.0

Q ss_pred             EEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc--------CceEEEEEeeCCCHHHHHHHHHhhC-CC
Q 030328           42 ITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT--------GIEVATYSADVRDFDAVKTALDEAG-PV  112 (179)
Q Consensus        42 ItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~v~~~~~D~~~~~~v~~~~~~~~-~i  112 (179)
                      +.|+ |.+|+++++.|.+.+..+.+.+|++++.++..++.....        ..++.++..   .++.+.++.++.. +=
T Consensus         4 fIG~-G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v---~d~~i~~v~~~l~~~~   79 (153)
T d2i76a2           4 FVGT-GTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIV---PDRYIKTVANHLNLGD   79 (153)
T ss_dssp             EESC-CHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECS---CTTTHHHHHTTTCCSS
T ss_pred             EEeC-cHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEec---cchhhhHHHhhhcccc
Confidence            4555 889999999886644434688999998888777643211        122333222   2345667776653 23


Q ss_pred             cEEEecCCC
Q 030328          113 DVLVVNQGV  121 (179)
Q Consensus       113 d~li~~ag~  121 (179)
                      .++++.++.
T Consensus        80 ~ivi~~s~~   88 (153)
T d2i76a2          80 AVLVHCSGF   88 (153)
T ss_dssp             CCEEECCSS
T ss_pred             eeeeecccc
Confidence            467787764

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.10  E-value=0.48  Score=32.76  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEe
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAK-EGARVSILA   68 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~   68 (179)
                      .+++++++.|-|- |.+|..+|+.|.+ .|++|+.++
T Consensus        27 ~~l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          27 IDPKKATVAVQGF-GNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             CCTTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CCcCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEee
Confidence            3578999998875 9999999999975 699988765

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.06  E-value=0.3  Score=32.85  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      -++|.|| |..|...|..+++.|.+|.++.+..
T Consensus         7 DlvVIG~-GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           7 TLLIIGG-GPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4788886 7999999999999999999998763

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.94  E-value=0.57  Score=28.57  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=28.7

Q ss_pred             cEEEEEcCC---CchHHHHHHHHHHcCCeEEEEecC
Q 030328           38 RHVFITGGS---SGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        38 k~vlItGa~---~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      |.+.|.|+|   +..|..+.+.|.+.|++|+.+..+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~   37 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN   37 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc
Confidence            789999998   568999999999999999887644

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.92  E-value=0.63  Score=31.43  Aligned_cols=61  Identities=16%  Similarity=0.200  Sum_probs=40.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDF   99 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~   99 (179)
                      .|.+||=.|+++|.-......+...| +|+.+|.+++..+...+.....  ..+..+..|..++
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~  116 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKP  116 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCG
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCc
Confidence            47899999999885444444444445 8999999998877666554332  2455555565543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=86.84  E-value=0.33  Score=35.07  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=25.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEec
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILAR   69 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r   69 (179)
                      ++|+|+ |-=|..+|.+|++.|.+|+++.+
T Consensus         7 viIVGs-G~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGS-GPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECc-CHHHHHHHHHHhhCCCeEEEEec
Confidence            788888 56699999999999999999976

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.66  E-value=0.3  Score=36.22  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHH------cCCeEEEEecChh
Q 030328           39 HVFITGGSSGIGLALAHQAAK------EGARVSILARSGE   72 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~------~g~~v~~~~r~~~   72 (179)
                      -|+|+|| |.-|.+.|..|++      +|.+|.++++..+
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            4899998 8999999999997      8999999998753

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.54  E-value=1.8  Score=33.42  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh
Q 030328           37 DRHVFITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE  108 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~  108 (179)
                      .+..++++.||..|.|.+..+.. .+.+|++..-...--+-...++....+..+..+..| .+.+++..++++
T Consensus       151 ~~~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~-G~fDDcq~~vk~  222 (511)
T d1kl7a_         151 KQITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVT-GTFDNCQDIVKA  222 (511)
T ss_dssp             CCEEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEES-SCHHHHHHHHHH
T ss_pred             ceEEEEEecCCCccHHHHHHhcCCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEec-cChHHHHHHHHH
Confidence            34556666678999999999984 467777766443211111222333335567777777 567777777665

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=86.27  E-value=2.6  Score=28.53  Aligned_cols=60  Identities=17%  Similarity=0.111  Sum_probs=40.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH-cCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAK-EGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRD   98 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~   98 (179)
                      .++++|=.|++.|   .++..+++ .|++|+.+|-++...+...+...... +.++.+...|..+
T Consensus        33 pg~~VLDiGCG~G---~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          33 PGTRILDLGSGSG---EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             TTCEEEEETCTTC---HHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCCEEEEEcCCCC---HHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            4789999998877   24555665 48999999999887665544433221 3446777777654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.24  E-value=0.35  Score=35.22  Aligned_cols=30  Identities=17%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEec
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILAR   69 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r   69 (179)
                      -++|+|+ |--|..+|.+|+++|.+|.++.+
T Consensus         9 dvIVVGs-G~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGS-GYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCeEEEEeC
Confidence            3788887 67899999999999999999986

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.15  E-value=0.36  Score=30.79  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=25.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      +++|.|| |.+|..+|..|. ++.+|.++++.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence            5788888 799999999996 477999998753

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=86.09  E-value=2  Score=27.98  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCe-EEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHh-hCCC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGAR-VSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDE-AGPV  112 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~-~~~i  112 (179)
                      +.++++|=.+|++|   +++.+.+++|++ |+.++.+.+..+...+.+......+...+..|.      .+.++. ..++
T Consensus        42 ~~~~~vLDlfaGsG---~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~------~~~l~~~~~~f  112 (183)
T d2fpoa1          42 IVDAQCLDCFAGSG---ALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA------MSFLAQKGTPH  112 (183)
T ss_dssp             HTTCEEEETTCTTC---HHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH------HHHHSSCCCCE
T ss_pred             cchhhhhhhhcccc---ceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecc------ccccccccccc
Confidence            46777776666655   456667779985 999999999888777666543334556666553      223332 3468


Q ss_pred             cEEEecC
Q 030328          113 DVLVVNQ  119 (179)
Q Consensus       113 d~li~~a  119 (179)
                      |+++...
T Consensus       113 DlIf~DP  119 (183)
T d2fpoa1         113 NIVFVDP  119 (183)
T ss_dssp             EEEEECC
T ss_pred             CEEEEcC
Confidence            9887764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.89  E-value=0.34  Score=30.97  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc-C---CeEEEEecC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE-G---ARVSILARS   70 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~-g---~~v~~~~r~   70 (179)
                      |++.|.||+|..|+.+.+.|.+. .   .+++...++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss   38 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc
Confidence            57889999999999999987754 2   335555544

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.67  E-value=2.1  Score=28.80  Aligned_cols=82  Identities=13%  Similarity=0.184  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhh--CCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEA--GPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~--~~i  112 (179)
                      +-|++|=+|...|.......+....|.+|+.++.+++..+...+.+.... ..++.++..|..+  .+.++.+..  +.+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e--~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD--LIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--HGGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc--cccchhhccccccc
Confidence            44789999998776554333333457899999999887766655554322 3457777776532  233444432  467


Q ss_pred             cEEEecC
Q 030328          113 DVLVVNQ  119 (179)
Q Consensus       113 d~li~~a  119 (179)
                      |.++.-+
T Consensus       134 D~ifiD~  140 (214)
T d2cl5a1         134 DMVFLDH  140 (214)
T ss_dssp             EEEEECS
T ss_pred             ceeeecc
Confidence            8766653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.37  E-value=0.19  Score=32.92  Aligned_cols=29  Identities=14%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCCeEEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGARVSIL   67 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~~v~~~   67 (179)
                      +.++|.|+ |.+|..+|..|.+.|.++.++
T Consensus         4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~   32 (183)
T d1d7ya1           4 APVVVLGA-GLASVSFVAELRQAGYQGLIT   32 (183)
T ss_dssp             SSEEEECC-SHHHHHHHHHHHHHTCCSCEE
T ss_pred             CCEEEECc-cHHHHHHHHHHHhcCCceEEE
Confidence            34888887 899999999999999774433

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.30  E-value=0.77  Score=28.28  Aligned_cols=37  Identities=27%  Similarity=0.344  Sum_probs=30.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .+||.++|.|+ |.-+..-|..|.+...+|+++.|.++
T Consensus        28 ~~gk~V~VvGg-G~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          28 FKGKRVAVIGG-GNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             GBTCEEEEECC-SHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             cCCceEEEEeC-CHHHHHHHHhhhccCCceEEEecccc
Confidence            57999999997 66677778889988888999988653

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=0.5  Score=29.18  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      .++|.++|.|+ |.-+..-|..|.+.+.+|+++.|+++
T Consensus        25 ~~~k~V~VvGg-GdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          25 YRNQKVAVIGG-GNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GTTSEEEEECS-SHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEECC-CHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            58999999999 78888899999999889999998763

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.06  E-value=0.53  Score=31.44  Aligned_cols=31  Identities=35%  Similarity=0.536  Sum_probs=27.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|| |..|...|..+++.|.+|.++++..
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            577777 8899999999999999999998754

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.59  E-value=1.6  Score=27.81  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCC---CHHHHHHHHHh---h
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVR---DFDAVKTALDE---A  109 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~---~~~~v~~~~~~---~  109 (179)
                      +|+++.|.+.+||.|-..+..+.+.|.++-  .-+++..++..+.+..   ....--+.|++   +.+...+.++.   .
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~--~l~~~t~~~L~~~lp~---~~~~~NPlD~~~~~~~~~~~~~l~~~~~d   76 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLA--TLEEKTIEELRSFLPP---MAAVKNPVDMIASARGEDYYRTAKLLLQD   76 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEEC--CCCHHHHHHHHHHSCT---TCEESSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccC--CCCHHHHHHHHHhCCC---cccCCCcccccCCCCHHHHHHHHHHHHcC
Confidence            688899999999999999999999996653  3344444444443321   11112345553   34555555543   2


Q ss_pred             CCCcEEEe
Q 030328          110 GPVDVLVV  117 (179)
Q Consensus       110 ~~id~li~  117 (179)
                      ..+|.++.
T Consensus        77 ~~vd~v~v   84 (163)
T d2csua3          77 PNVDMLIA   84 (163)
T ss_dssp             TTCSEEEE
T ss_pred             CCcCEEEE
Confidence            56786544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.54  E-value=2  Score=29.90  Aligned_cols=72  Identities=22%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             CCcEEEEEcCCCc-hHHHHHHHHHHcC-CeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHhhCCC
Q 030328           36 KDRHVFITGGSSG-IGLALAHQAAKEG-ARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDEAGPV  112 (179)
Q Consensus        36 ~~k~vlItGa~~~-iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~~i  112 (179)
                      .|++++-.||+.| ++..+|    ++| ++|+.++.+++..+...+.+..+. ..++..+..|..+..       .-+..
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a----~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-------~~~~~  175 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIA----VYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GENIA  175 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHH----HHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CCSCE
T ss_pred             CccEEEECcceEcHHHHHHH----HhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-------cCCCC
Confidence            5889999888744 444443    445 589999999998877666555432 345888888875421       12357


Q ss_pred             cEEEec
Q 030328          113 DVLVVN  118 (179)
Q Consensus       113 d~li~~  118 (179)
                      |.++.+
T Consensus       176 D~Ii~~  181 (260)
T d2frna1         176 DRILMG  181 (260)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            766654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.45  E-value=1.4  Score=29.47  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH-HcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHHHHHHHhhCCCcE
Q 030328           36 KDRHVFITGGSSGIGLALAHQAA-KEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVDV  114 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v~~~~~~~~~id~  114 (179)
                      .++++|=.|++.|.   ++..++ +.+.+|+++|-+++-++...+.........+.++.+|+.+..     + ..+.+|+
T Consensus        60 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-----~-~~~~fD~  130 (222)
T d2ex4a1          60 GTSCALDCGAGIGR---ITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-----P-EPDSYDV  130 (222)
T ss_dssp             CCSEEEEETCTTTH---HHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-----C-CSSCEEE
T ss_pred             CCCEEEEeccCCCH---hhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccc-----c-ccccccc
Confidence            46789999998774   344444 445579999999988877666655433445677788875421     1 1245677


Q ss_pred             EEecCC
Q 030328          115 LVVNQG  120 (179)
Q Consensus       115 li~~ag  120 (179)
                      ++....
T Consensus       131 I~~~~~  136 (222)
T d2ex4a1         131 IWIQWV  136 (222)
T ss_dssp             EEEESC
T ss_pred             cccccc
Confidence            665543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.34  E-value=4.5  Score=28.66  Aligned_cols=41  Identities=22%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~   79 (179)
                      .-|++||.|+++|   .+++++.+.  ..+|.+++.+++=.+-..+
T Consensus        89 ~pk~VLiiGgG~G---~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~  131 (295)
T d1inla_          89 NPKKVLIIGGGDG---GTLREVLKHDSVEKAILCEVDGLVIEAARK  131 (295)
T ss_dssp             SCCEEEEEECTTC---HHHHHHTTSTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCceEEEecCCch---HHHHHHHhcCCCceEEEecCCHHHHHHHHH
Confidence            4579999999877   456677664  3569999999875444333

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.28  E-value=0.6  Score=31.47  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecCh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE--GARVSILARSG   71 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~   71 (179)
                      ++|.|.|| |.-|...|+.|.++  |++|.+.++.+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            47888988 89999999999875  78999998875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.10  E-value=0.56  Score=31.01  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             CcCCcEEEEEcCCCchHHH-HHHHHHHcCCeEEE
Q 030328           34 PIKDRHVFITGGSSGIGLA-LAHQAAKEGARVSI   66 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~-la~~l~~~g~~v~~   66 (179)
                      .+.|+-++++|. +|.|+. +|.+|.++|+.++.
T Consensus        12 ~~~g~gvli~G~-sG~GKS~lal~l~~~G~~lva   44 (177)
T d1knxa2          12 EVFGVGVLLTGR-SGIGKSECALDLINKNHLFVG   44 (177)
T ss_dssp             EETTEEEEEEES-SSSSHHHHHHHHHTTTCEEEE
T ss_pred             EECCEEEEEEcC-CCCCHHHHHHHHHHcCCceec
Confidence            457888999988 788985 99999999998654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.04  E-value=0.56  Score=30.74  Aligned_cols=31  Identities=39%  Similarity=0.515  Sum_probs=26.2

Q ss_pred             CcCCcEEEEEcCCCchHHH-HHHHHHHcCCeEE
Q 030328           34 PIKDRHVFITGGSSGIGLA-LAHQAAKEGARVS   65 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~-la~~l~~~g~~v~   65 (179)
                      .+.|+-++++|. +|.|+. ++.+|.++|+.++
T Consensus        12 ~~~g~gvli~G~-sg~GKS~la~~l~~~g~~li   43 (169)
T d1ko7a2          12 DVYGVGVLITGD-SGIGKSETALELIKRGHRLV   43 (169)
T ss_dssp             EETTEEEEEEES-TTSSHHHHHHHHHHTTCEEE
T ss_pred             EECCEEEEEEeC-CCCCHHHHHHHHHHcCCeEE
Confidence            467889999999 788985 8999999999853

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=83.75  E-value=0.65  Score=31.33  Aligned_cols=31  Identities=39%  Similarity=0.543  Sum_probs=27.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|| |.-|...|..+++.|.+|.++++.+
T Consensus         9 viIIG~-GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGG-GPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            677787 8899999999999999999999765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=83.72  E-value=1.2  Score=29.81  Aligned_cols=47  Identities=21%  Similarity=0.310  Sum_probs=34.8

Q ss_pred             CCcEEEEEcCCCchH-HHHHHHHHHcCCeEEEEecChhHHHHHHHHHH
Q 030328           36 KDRHVFITGGSSGIG-LALAHQAAKEGARVSILARSGEKLEEAKQSIQ   82 (179)
Q Consensus        36 ~~k~vlItGa~~~iG-~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~   82 (179)
                      .+.++|=.|++.|-- ..+++.+...|++|+++|.+++-++...+.+.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~   86 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA   86 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH
Confidence            567899999987743 44555555578999999999987776665543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.62  E-value=0.66  Score=30.82  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=27.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|| |..|...|..+++.|.+|.++++..
T Consensus         6 viVIG~-GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGA-GPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecCC
Confidence            678886 7789999999999999999998764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.55  E-value=4.7  Score=27.13  Aligned_cols=61  Identities=11%  Similarity=0.037  Sum_probs=36.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhh-cCceEEEEEeeC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLA-TGIEVATYSADV   96 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~v~~~~~D~   96 (179)
                      .-|++|=.|...|.......+-...+.+|+.++.+++..+...+.+... ...++..+..|.
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            4578999998877653333222234669999999988766555544321 123344444443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.14  E-value=0.79  Score=30.12  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=26.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcC--CeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEG--ARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~   71 (179)
                      +++|.|| |.+|..+|..|.+.+  .+|++++|++
T Consensus         2 KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5888998 799999999999875  5688887753

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.12  E-value=6.2  Score=28.15  Aligned_cols=41  Identities=22%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcC--CeEEEEecChhHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEG--ARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~   79 (179)
                      .-|+|||.|+++|   .+++++.+..  .+|.+++-+++=.+...+
T Consensus       106 ~pk~VLIiGgG~G---~~~rellk~~~v~~v~~VEID~~Vv~~a~~  148 (312)
T d2b2ca1         106 DPKRVLIIGGGDG---GILREVLKHESVEKVTMCEIDEMVIDVAKK  148 (312)
T ss_dssp             SCCEEEEESCTTS---HHHHHHTTCTTCCEEEEECSCHHHHHHHHH
T ss_pred             CCCeEEEeCCCch---HHHHHHHHcCCcceEEEEcccHHHHHHHHh
Confidence            4578999999876   3566666643  579999998875544444

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=83.11  E-value=0.78  Score=30.22  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=26.1

Q ss_pred             CcCCcEEEEEcCCCchHH-HHHHHHHHcCCeEEE
Q 030328           34 PIKDRHVFITGGSSGIGL-ALAHQAAKEGARVSI   66 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~-~la~~l~~~g~~v~~   66 (179)
                      .+.|+-++++|. +|.|+ .+|.+|.++|+..+.
T Consensus        11 ~~~g~gvl~~G~-sG~GKStlal~l~~~g~~lv~   43 (176)
T d1kkma_          11 DIYGLGVLITGD-SGVGKSETALELVQRGHRLIA   43 (176)
T ss_dssp             EETTEEEEEECC-TTSCHHHHHHHHHHTTCEEEE
T ss_pred             EECCEEEEEEeC-CCCCHHHHHHHHHHcCCeEEe
Confidence            457888999988 67787 778999999998654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.90  E-value=1.1  Score=30.18  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=31.4

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHH--------------------HcCCe-EEEEecChh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAA--------------------KEGAR-VSILARSGE   72 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~--------------------~~g~~-v~~~~r~~~   72 (179)
                      ..+.+|+++|.|+ |..+..+|+.++                    +.|++ |++++|+..
T Consensus        35 ~~~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          35 PDLSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             ccccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            3467999999998 899999999887                    56755 889988754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.60  E-value=0.99  Score=28.01  Aligned_cols=38  Identities=21%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             CcCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChh
Q 030328           34 PIKDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGE   72 (179)
Q Consensus        34 ~~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~   72 (179)
                      ..+||.++|.|+ |.-+..-|..|++...+|+++.|+++
T Consensus        31 ~frgk~V~VvGg-GdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          31 IFRNKPLAVIGG-GDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GGTTSEEEEECC-SHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEEcC-chHHHHHHHHHhCCCCcEEEEEeccc
Confidence            358999999999 66677778888888888999988753

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.50  E-value=0.65  Score=31.31  Aligned_cols=30  Identities=40%  Similarity=0.482  Sum_probs=26.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      ++|.|| |.-|...|..+++.|.+|.++++.
T Consensus         6 viVIG~-GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGG-GSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECC-SHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCeEEEEecc
Confidence            678888 677999999999999999999854

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.38  E-value=0.77  Score=31.68  Aligned_cols=31  Identities=32%  Similarity=0.606  Sum_probs=26.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      ++|.|| |.-|...|.++++.|.+|.++++..
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCeEEEEecCC
Confidence            577777 6669999999999999999999863

>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: Nitrogenase iron-molybdenum protein
domain: Nitrogenase iron-molybdenum protein, beta chain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.09  E-value=3.7  Score=31.54  Aligned_cols=81  Identities=10%  Similarity=0.201  Sum_probs=49.9

Q ss_pred             cCCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEe--cChhHHHHHHHH-HHhhc-CceEEEEEeeCCCHHHHHHHHHhhC
Q 030328           35 IKDRHVFITGGSSGIGLALAHQAAKEGARVSILA--RSGEKLEEAKQS-IQLAT-GIEVATYSADVRDFDAVKTALDEAG  110 (179)
Q Consensus        35 ~~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~--r~~~~~~~~~~~-~~~~~-~~~v~~~~~D~~~~~~v~~~~~~~~  110 (179)
                      +.||++.|.|. .....++++.|.+.|+.++.+.  ......++..++ +.... +.+...+  .-.|...+++.+... 
T Consensus       358 l~GkrvaI~gd-~~~~~~la~fL~ElG~e~~~v~~~~~~~~~~~~~~~~l~~~~~g~~~~v~--~~~Dl~~l~~~i~~~-  433 (519)
T d1qh8b_         358 LHGKKFGLYGD-PDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVF--INCDLWHFRSLMFTR-  433 (519)
T ss_dssp             HTTCEEEEESC-HHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEE--ESCCHHHHHHHHHHH-
T ss_pred             cCCcEEEEECC-cHHHHHHHHHHHHcCCeeeEEEecCCCHHHHHHHHHHHHhCcCCCCCEEE--ECCCHHHHHHHHhhc-
Confidence            57999999876 6678889999999999964332  222333333333 32221 2333332  235677788877666 


Q ss_pred             CCcEEEecC
Q 030328          111 PVDVLVVNQ  119 (179)
Q Consensus       111 ~id~li~~a  119 (179)
                      ++|.+|=|.
T Consensus       434 ~pDLliG~s  442 (519)
T d1qh8b_         434 QPDFMIGNS  442 (519)
T ss_dssp             CCSEEEECT
T ss_pred             CCCEEEECC
Confidence            689888663

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.07  E-value=0.84  Score=29.14  Aligned_cols=25  Identities=12%  Similarity=0.260  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcCC
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEGA   62 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g~   62 (179)
                      =+|.|.||+|..|..+.+.|.+..+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCC
Confidence            3689999999999999999987754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.88  E-value=0.81  Score=30.35  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=26.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHcCCeEEEEecC
Q 030328           40 VFITGGSSGIGLALAHQAAKEGARVSILARS   70 (179)
Q Consensus        40 vlItGa~~~iG~~la~~l~~~g~~v~~~~r~   70 (179)
                      ++|.|| |.-|...|..+++.|.+|.++++.
T Consensus         6 viIIGg-GpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGA-GPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCeEEEEecc
Confidence            677777 778999999999999999999874

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=81.80  E-value=3.6  Score=24.53  Aligned_cols=79  Identities=15%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhcCceEEEEEeeCCCHHHH---HHHHHhhCCCc
Q 030328           37 DRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLATGIEVATYSADVRDFDAV---KTALDEAGPVD  113 (179)
Q Consensus        37 ~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~v---~~~~~~~~~id  113 (179)
                      ||++||.-....+-..+...|.+.|++|+....+.++.-+..++    ...++.....++-+.+.+   +++-+....+-
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~----~~~dliilD~~mp~~~G~e~~~~ir~~~~~~p   76 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE----LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAK   76 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHh----ccCCEEEEecCCCCCCHHHHHHHHHHhCCCCc
Confidence            78999999999999999999999999988666665433322222    234454443434333333   33333334455


Q ss_pred             EEEecC
Q 030328          114 VLVVNQ  119 (179)
Q Consensus       114 ~li~~a  119 (179)
                      +++..+
T Consensus        77 vi~ls~   82 (118)
T d1u0sy_          77 IIVCSA   82 (118)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            665543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.71  E-value=1.1  Score=31.11  Aligned_cols=83  Identities=14%  Similarity=0.027  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCC-CchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHH-HHHh-hCC
Q 030328           36 KDRHVFITGGS-SGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKT-ALDE-AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~-~~~~-~~~  111 (179)
                      ...++|=.|.+ |.|+..+++++-  +++++++|.+++.++-..+-+.... ..++.....|..+  .+.. +.+. .+.
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~--~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~--~~~~~~~~~~~~~  136 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN--GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT--LLMDALKEESEII  136 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC--SSTTTSTTCCSCC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC--CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHH--hhhhhhhhcccCc
Confidence            34567777766 558888888773  7899999999998776666554332 4456665554322  1111 1111 247


Q ss_pred             CcEEEecCCCC
Q 030328          112 VDVLVVNQGVF  122 (179)
Q Consensus       112 id~li~~ag~~  122 (179)
                      +|+++.|.=..
T Consensus       137 fD~ivsNPPY~  147 (250)
T d2h00a1         137 YDFCMCNPPFF  147 (250)
T ss_dssp             BSEEEECCCCC
T ss_pred             eeEEEecCccc
Confidence            89999997544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.38  E-value=3.8  Score=28.66  Aligned_cols=58  Identities=12%  Similarity=0.039  Sum_probs=39.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc-CCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE-GARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADV   96 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~   96 (179)
                      .|.+||=.|++.|   .++.+++++ |++|+.++.+++..+...+.+.... ...+.....|.
T Consensus        52 ~g~~VLDiGCG~G---~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~  111 (280)
T d2fk8a1          52 PGMTLLDIGCGWG---TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW  111 (280)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG
T ss_pred             CCCEEEEecCCch---HHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh
Confidence            5889999999866   345556654 8999999999988776666554322 23344444443

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.25  E-value=1.3  Score=30.08  Aligned_cols=39  Identities=21%  Similarity=0.269  Sum_probs=31.6

Q ss_pred             cCcCCcEEEEEcCCCchHHHHHHHHHHc--------------------CCe-EEEEecChh
Q 030328           33 IPIKDRHVFITGGSSGIGLALAHQAAKE--------------------GAR-VSILARSGE   72 (179)
Q Consensus        33 ~~~~~k~vlItGa~~~iG~~la~~l~~~--------------------g~~-v~~~~r~~~   72 (179)
                      .++.+|+++|.|+ |..+.-+|+.+.+.                    |++ |.+++|+..
T Consensus        35 ~~~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          35 PDLSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CCTTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ccccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            3467999999988 89999999999873                    644 888888764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.61  E-value=0.64  Score=31.24  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHcC-------CeEEEEecCh
Q 030328           38 RHVFITGGSSGIGLALAHQAAKEG-------ARVSILARSG   71 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~g-------~~v~~~~r~~   71 (179)
                      .+|+|.|| |.-|.+.|..|+++|       ++|.+.++.+
T Consensus         3 ~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            47899998 899999999999998       4789998865

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=80.15  E-value=0.41  Score=34.51  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHcCCeEEEEecCh
Q 030328           39 HVFITGGSSGIGLALAHQAAKEGARVSILARSG   71 (179)
Q Consensus        39 ~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~   71 (179)
                      -++|.|+ |.-|...|.+++++|.+|+++++.+
T Consensus         9 DVlVVG~-G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGA-GGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECC-SHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            4788888 8889999999999999999998753

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.12  E-value=1.1  Score=29.24  Aligned_cols=29  Identities=17%  Similarity=0.253  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHc-CCeEEE
Q 030328           38 RHVFITGGSSGIGLALAHQAAKE-GARVSI   66 (179)
Q Consensus        38 k~vlItGa~~~iG~~la~~l~~~-g~~v~~   66 (179)
                      .++.|.||+|..|..+.+.|.+. ..++..
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~   31 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITA   31 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEe
Confidence            47899999999999999999986 566643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=80.07  E-value=6.6  Score=26.50  Aligned_cols=83  Identities=14%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHcCCeEEEEecChhHHHHHHHHHHhhc-CceEEEEEeeCCCHHHHHHHHHh---hCC
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKEGARVSILARSGEKLEEAKQSIQLAT-GIEVATYSADVRDFDAVKTALDE---AGP  111 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~v~~~~~~---~~~  111 (179)
                      .-|++|=.|...|.......+-...+.+|+.++.+++..+...+.+.... ..++..+..|.  .+.+.++.+.   .++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a--~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA--LPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHHHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH--HHHHHHHHhccccCCc
Confidence            45789999988776554443333456799999999887665555444321 23455555544  2233444332   245


Q ss_pred             CcEEEecCC
Q 030328          112 VDVLVVNQG  120 (179)
Q Consensus       112 id~li~~ag  120 (179)
                      +|.++..|.
T Consensus       137 fD~iFiDa~  145 (227)
T d1susa1         137 YDFIFVDAD  145 (227)
T ss_dssp             BSEEEECSC
T ss_pred             eeEEEeccc
Confidence            676666553

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=7.6  Score=27.19  Aligned_cols=41  Identities=22%  Similarity=0.362  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHc--CCeEEEEecChhHHHHHHH
Q 030328           36 KDRHVFITGGSSGIGLALAHQAAKE--GARVSILARSGEKLEEAKQ   79 (179)
Q Consensus        36 ~~k~vlItGa~~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~   79 (179)
                      .-|++||.|+++|   .+++++.+.  ..+|.+++-+++=.+-..+
T Consensus        78 ~pk~vLiiGgG~G---~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~  120 (285)
T d2o07a1          78 NPRKVLIIGGGDG---GVLREVVKHPSVESVVQCEIDEDVIQVSKK  120 (285)
T ss_dssp             SCCEEEEEECTTS---HHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred             CcCeEEEeCCCch---HHHHHHHHcCCcceeeeccCCHHHHHHHHh
Confidence            4578999999877   456666654  3578899988775444433