Citrus Sinensis ID: 030346

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKR
cccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccEEEEEEcccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHcc
cccccccEccccccccccHHHHHHccccccccccccEEEEcccEEEccccHHHcccccHHHHHccccHHHHHcHcHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEccHHHcHHHHcccccccEEEEEEHHHcccccccccccHHHHHHHHHHHHcc
mailapasvskdplpssssaltplrsstqifgpkfkfrqigqtqlslstsfkkssgfklkgwrhsegitqefqvdKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQnladgqapkFMVIAcadsrvcpsnilgfqpgeafIVRNvanmvppcesgpsetNAALEFAVNSVKR
mailapasvskdplpssssaltplrSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCesgpsetnaalEFAVNSVKR
MAILAPasvskdplpssssaltplrssTQIFGPKFKFRQIGQTQlslstsfkkssgfklkgWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKR
*****************************IFGPKFKFRQIGQT************GFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMV***********************
*****************************************************************************************FDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKR
********************LTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKR
**********K*PLPSS**ALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVD*L*T*****NECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
P46510 330 Carbonic anhydrase OS=Fla N/A no 0.664 0.360 0.475 4e-23
P46511 330 Carbonic anhydrase OS=Fla N/A no 0.592 0.321 0.504 7e-23
P46512 330 Carbonic anhydrase 1 OS=F N/A no 0.592 0.321 0.504 7e-23
P17067 328 Carbonic anhydrase, chlor N/A no 0.491 0.268 0.561 9e-23
P46281 329 Carbonic anhydrase OS=Fla N/A no 0.592 0.322 0.504 1e-22
P27140 347 Carbonic anhydrase, chlor no no 0.508 0.262 0.521 2e-21
P27141 321 Carbonic anhydrase, chlor N/A no 0.508 0.283 0.532 3e-21
P42737 259 Carbonic anhydrase 2, chl no no 0.508 0.351 0.510 3e-21
P16016 319 Carbonic anhydrase, chlor N/A no 0.486 0.272 0.545 6e-21
P40880 324 Carbonic anhydrase, chlor N/A no 0.491 0.271 0.471 5e-18
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function desciption
 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 1/120 (0%)

Query: 60  KGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119
           KG       T+  Q+     A + +   D  +++K  F+ FK +KF+ N   Y  LA GQ
Sbjct: 93  KGELEPVAATRIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQ 152

Query: 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCE-SGPSETNAALEFAVNSVK 178
           +PKFMV AC+DSRVCPS++L FQPGEAF+VRNVANMVPP + +  S   AA+E+AV  +K
Sbjct: 153 SPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLK 212
Reversible hydration of carbon dioxide.
Flaveria bidentis (taxid: 4224)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function description
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function description
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
359475658 300 PREDICTED: carbonic anhydrase 2, chlorop 0.860 0.513 0.615 4e-48
296087414 301 unnamed protein product [Vitis vinifera] 0.865 0.514 0.615 5e-48
356554783 301 PREDICTED: carbonic anhydrase, chloropla 0.949 0.564 0.544 2e-47
356549520 301 PREDICTED: carbonic anhydrase, chloropla 0.949 0.564 0.544 3e-47
255563296 313 carbonic anhydrase, putative [Ricinus co 0.977 0.559 0.559 5e-47
255645634 301 unknown [Glycine max] 0.949 0.564 0.539 6e-47
388516167 308 unknown [Lotus japonicus] 0.977 0.568 0.516 9e-46
388502556 308 unknown [Lotus japonicus] 0.977 0.568 0.511 3e-45
224140715256 predicted protein [Populus trichocarpa] 0.709 0.496 0.669 1e-43
297802642 301 carbonic anhydrase family protein [Arabi 0.893 0.531 0.543 4e-42
>gi|359475658|ref|XP_002263870.2| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 119/156 (76%), Gaps = 2/156 (1%)

Query: 23  PLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAE 82
           P  + + IFG K K   I QT ++   S  +S   +LK  R S G+TQE   D+LE+ AE
Sbjct: 23  PSTTRSTIFGSKPKLSVIEQTHVTNLASLNQS--LRLKASRESPGLTQELTSDRLESIAE 80

Query: 83  VENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQ 142
           +EN  D FD++KHRFLSFKK K++ENLE +QNLA  QAPKFMVIACADSRVCPS ILGF+
Sbjct: 81  IENRYDVFDEVKHRFLSFKKHKYLENLECFQNLATAQAPKFMVIACADSRVCPSKILGFE 140

Query: 143 PGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVK 178
           PGEAF+VRNVAN+VP  E+GP+ETNAALEFAVN+++
Sbjct: 141 PGEAFMVRNVANLVPLYENGPTETNAALEFAVNTLE 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087414|emb|CBI34003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554783|ref|XP_003545722.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356549520|ref|XP_003543141.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255563296|ref|XP_002522651.1| carbonic anhydrase, putative [Ricinus communis] gi|223538127|gb|EEF39738.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255645634|gb|ACU23311.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388516167|gb|AFK46145.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388502556|gb|AFK39344.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224140715|ref|XP_002323724.1| predicted protein [Populus trichocarpa] gi|222866726|gb|EEF03857.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297802642|ref|XP_002869205.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315041|gb|EFH45464.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
TAIR|locus:2134218 302 BCA5 "beta carbonic anhydrase 0.597 0.354 0.633 9.5e-34
TAIR|locus:2196292 290 BCA6 "beta carbonic anhydrase 0.603 0.372 0.562 1.1e-30
TAIR|locus:2084198 347 CA1 "carbonic anhydrase 1" [Ar 0.569 0.293 0.480 2.4e-21
TAIR|locus:2185460 331 CA2 "carbonic anhydrase 2" [Ar 0.575 0.311 0.466 2.4e-21
TAIR|locus:2016109 280 BCA4 "beta carbonic anhydrase 0.508 0.325 0.521 4.9e-21
TAIR|locus:2034797 258 BCA3 "beta carbonic anhydrase 0.541 0.375 0.509 9.2e-20
TIGR_CMR|CBU_0139 206 CBU_0139 "carbonic anhydrase" 0.474 0.412 0.465 1.4e-14
TIGR_CMR|GSU_2307 211 GSU_2307 "carbonic anhydrase" 0.435 0.369 0.462 3.4e-13
TIGR_CMR|CJE_0288 211 CJE_0288 "carbonic anhydrase" 0.446 0.379 0.402 1.2e-12
TIGR_CMR|SPO_3715 216 SPO_3715 "carbonic anhydrase, 0.463 0.384 0.465 1.5e-12
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 71/112 (63%), Positives = 89/112 (79%)

Query:    67 GITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFM-ENLEHYQNLADGQAPKFMV 125
             G+TQE        A + +N  D FD MK RFL+FKK K++ ++ EHY+NLAD QAPKF+V
Sbjct:    63 GLTQEAN----GVAIDRQNNTDVFDDMKQRFLAFKKLKYIRDDFEHYKNLADAQAPKFLV 118

Query:   126 IACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV 177
             IACADSRVCPS +LGFQPG+AF VRN+AN+VPP ESGP+ET AALEF+VN++
Sbjct:   119 IACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTL 170
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.1LOW CONFIDENCE prediction!
4th Layer4.2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
PLN03006 301 PLN03006, PLN03006, carbonate dehydratase 7e-53
cd00884 190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 2e-43
PLN02154 290 PLN02154, PLN02154, carbonic anhydrase 1e-38
PLN00416 258 PLN00416, PLN00416, carbonate dehydratase 2e-29
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 4e-25
PLN03019 330 PLN03019, PLN03019, carbonic anhydrase 5e-25
PLN03014 347 PLN03014, PLN03014, carbonic anhydrase 2e-24
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 2e-24
COG0288 207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 6e-23
cd00883 182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 4e-20
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 2e-19
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 1e-11
PRK10437 220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 2e-10
cd03379142 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) 4e-04
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information 
 Score =  170 bits (431), Expect = 7e-53
 Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 11/171 (6%)

Query: 8   SVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFK-KSSGFKLKGWRHSE 66
           SVS DP   SS++L  L++   IFGP    +    TQL +  SF+ K++  ++     + 
Sbjct: 9   SVSHDPF--SSTSLLNLQTQA-IFGPNHSLKT---TQLRIPASFRRKATNLQVMASGKTP 62

Query: 67  GITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVI 126
           G+TQE        A + +N  D FD MK RFL+FKK K+M++ EHY+NLAD QAPKF+VI
Sbjct: 63  GLTQEAN----GVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVI 118

Query: 127 ACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSV 177
           ACADSRVCPS +LGFQPG+AF VRN+AN+VPP ESGP+ET AALEF+VN++
Sbjct: 119 ACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTL 169

Length = 301
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239474 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
PLN03006 301 carbonate dehydratase 100.0
PLN03014 347 carbonic anhydrase 100.0
PLN03019 330 carbonic anhydrase 100.0
PLN00416 258 carbonate dehydratase 100.0
PLN02154 290 carbonic anhydrase 99.95
COG0288 207 CynT Carbonic anhydrase [Inorganic ion transport a 99.95
PRK15219 245 carbonic anhydrase; Provisional 99.94
PRK10437 220 carbonic anhydrase; Provisional 99.94
cd00883 182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 99.94
cd00884 190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 99.94
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 99.92
KOG1578 276 consensus Predicted carbonic anhydrase involved in 99.89
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 99.82
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 99.76
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 99.74
KOG1578 276 consensus Predicted carbonic anhydrase involved in 93.68
>PLN03006 carbonate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-44  Score=313.07  Aligned_cols=168  Identities=51%  Similarity=0.822  Sum_probs=146.5

Q ss_pred             CCCCCCCccccCCCCCCCCCCCCCCCccceeCCCccccchhhhHHHHHHHhhhcc-ccccccccccchhhhhhhccccch
Q 030346            1 MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSS-GFKLKGWRHSEGITQEFQVDKLET   79 (179)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~~~-~~~~~a~~~~~~~t~eL~~~~~~~   79 (179)
                      +|+|+++|||+|||+|+|+.  +.+.....+|..+    ...|++||...+|++. +|+.+|++|++++|+||+....+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-   74 (301)
T PLN03006          2 AATPTHFSVSHDPFSSTSLL--NLQTQAIFGPNHS----LKTTQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAID-   74 (301)
T ss_pred             CCCCCCcccccCCcchhhhh--ccCcceeecCCcc----cceeEecccccccccccchhhhhhhchHHHHHHHhhccCC-
Confidence            47899999999999999996  2233344445444    6668899999887754 88999999999999999865422 


Q ss_pred             hcccCCHHHHHHHHHHHHHHhhhhhcccChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceeEEeecCCcCCCC
Q 030346           80 AAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC  159 (179)
Q Consensus        80 ~~~~~~~~~~l~~Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~If~~~pGDlFVvRNiGNiV~~~  159 (179)
                         ..++.+++++|++||.+|+..++..++++|+++++||+|+++||+||||||+|+.|||++|||+|||||+||+|+|+
T Consensus        75 ---~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~  151 (301)
T PLN03006         75 ---RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPY  151 (301)
T ss_pred             ---CCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCc
Confidence               23478999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchHHHHHHHHHhhC
Q 030346          160 ESGPSETNAALEFAVNSVK  178 (179)
Q Consensus       160 d~~~~s~~AsLEYAV~~L~  178 (179)
                      |.+..++.++|||||.+|+
T Consensus       152 d~~~~~~~aSLEYAV~~L~  170 (301)
T PLN03006        152 ESGPTETKAALEFSVNTLN  170 (301)
T ss_pred             cccccchhhhHHHHHHHhC
Confidence            8766779999999999997

>PLN03014 carbonic anhydrase Back     alignment and domain information
>PLN03019 carbonic anhydrase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
1ekj_A 221 The X-Ray Crystallographic Structure Of Beta Carbon 3e-23
3e3g_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 3e-09
2a8c_A 229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 1e-08
3e28_A 229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 1e-08
3e24_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 1e-08
3mf3_A 221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 1e-08
3ucj_A 227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 3e-08
1i6o_A 220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 3e-08
3e2x_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 3e-08
1i6p_A 220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 3e-08
3e1v_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 4e-08
3qy1_A 223 1.54a Resolution Crystal Structure Of A Beta-Carbon 4e-08
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 1e-07
2w3n_A 239 Structure And Inhibition Of The Co2-Sensing Carboni 4e-07
2w3q_A 243 Structure And Inhibition Of The Co2-Sensing Carboni 4e-07
3eyx_A 216 Crystal Structure Of Carbonic Anhydrase Nce103 From 6e-07
2a5v_A 213 Crystal Structure Of M. Tuberculosis Beta Carbonic 1e-05
1ym3_A 215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 2e-05
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 91  DKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVR 150
           +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VR
Sbjct: 15  ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 151 NVANMVPPCESGP-SETNAALEFAVNSVK 178
           NVAN+VPP +    + T AA+E+AV  +K
Sbjct: 75  NVANLVPPYDQAKYAGTGAAIEYAVLHLK 103
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
1ekj_A 221 Beta-carbonic anhydrase; rossman fold domain, stra 2e-41
3qy1_A 223 Carbonic anhydrase; structural genomics, center fo 1e-35
3e3i_A 229 Carbonic anhydrase 2, beta carbonic anhydrase; all 2e-35
3ucj_A 227 Carbonic anhydrase; alpha/beta, strand exchange, l 2e-34
2w3q_A 243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 4e-34
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 6e-34
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 6e-33
3eyx_A 216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 3e-31
1ym3_A 215 Carbonic anhydrase (carbonate dehydratase) (carbo 6e-28
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 8e-17
3teo_A 204 Carbon disulfide hydrolase; beta carbonic anhydras 1e-16
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 2e-15
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 3e-15
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  137 bits (347), Expect = 2e-41
 Identities = 50/101 (49%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 79  TAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNI 138
           ++++   + +  +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++
Sbjct: 3   SSSDGIPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHV 62

Query: 139 LGFQPGEAFIVRNVANMVPPCE-SGPSETNAALEFAVNSVK 178
           L FQPGEAF+VRNVAN+VPP + +  + T AA+E+AV  +K
Sbjct: 63  LDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLK 103
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
1ekj_A 221 Beta-carbonic anhydrase; rossman fold domain, stra 99.97
2w3q_A 243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 99.96
1ym3_A 215 Carbonic anhydrase (carbonate dehydratase) (carbo 99.96
3qy1_A 223 Carbonic anhydrase; structural genomics, center fo 99.96
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 99.95
3ucj_A 227 Carbonic anhydrase; alpha/beta, strand exchange, l 99.95
3e3i_A 229 Carbonic anhydrase 2, beta carbonic anhydrase; all 99.95
3eyx_A 216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 99.94
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 99.94
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 99.93
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 99.9
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 99.9
3teo_A 204 Carbon disulfide hydrolase; beta carbonic anhydras 99.85
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=99.97  E-value=3.4e-31  Score=221.08  Aligned_cols=95  Identities=53%  Similarity=0.900  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHHhhhhhcccChHHHhhhhcCCCCcEEEEeecCCCCCcccccCCCCCceeEEeecCCcCCCCCCCC
Q 030346           84 ENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP  163 (179)
Q Consensus        84 ~~~~~~l~~Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~If~~~pGDlFVvRNiGNiV~~~d~~~  163 (179)
                      .+|++++++|++||++|+++.+..++++|+.|+++|+|+++||+||||||+|+.|||++|||+||+||+||+|+++|.+.
T Consensus         8 ~~p~~~l~~L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~   87 (221)
T 1ekj_A            8 IPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAK   87 (221)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccccc
Confidence            46788999999999999999888899999999999999999999999999999999999999999999999999987653


Q ss_pred             -cchHHHHHHHHHhhC
Q 030346          164 -SETNAALEFAVNSVK  178 (179)
Q Consensus       164 -~s~~AsLEYAV~~L~  178 (179)
                       .++.++|||||.+|+
T Consensus        88 ~~~~~asleyAv~~L~  103 (221)
T 1ekj_A           88 YAGTGAAIEYAVLHLK  103 (221)
T ss_dssp             CHHHHHHHHHHHHTSC
T ss_pred             cchhHHHHHHHHHhcC
Confidence             357899999999997
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d1ekja_ 210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 8e-30
d1i6pa_ 214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 3e-25
d1ddza2 239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 3e-25
d1ddza1 242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 3e-23
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 6e-14
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  106 bits (265), Expect = 8e-30
 Identities = 50/90 (55%), Positives = 66/90 (73%), Gaps = 1/90 (1%)

Query: 90  FDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIV 149
            +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+V
Sbjct: 3   SERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVV 62

Query: 150 RNVANMVPPCESGPS-ETNAALEFAVNSVK 178
           RNVAN+VPP +      T AA+E+AV  +K
Sbjct: 63  RNVANLVPPYDQAKYAGTGAAIEYAVLHLK 92
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d1ddza2 239 beta-carbonic anhydrase {Red alga (Porphyridium pu 99.97
d1ekja_ 210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 99.97
d1i6pa_ 214 beta-carbonic anhydrase {Escherichia coli [TaxId: 99.96
d1ddza1 242 beta-carbonic anhydrase {Red alga (Porphyridium pu 99.96
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 99.88
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Red alga (Porphyridium purpureum) [TaxId: 35688]

Probab=99.97  E-value=1.1e-33  Score=236.69  Aligned_cols=121  Identities=23%  Similarity=0.320  Sum_probs=109.2

Q ss_pred             HHhhhccccccccccccchhhhhhhccccchhcccCCHHHHHHHHHHHHHHhhhhhcccChHHHhhhhcCCCCcEEEEee
Q 030346           49 TSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIAC  128 (179)
Q Consensus        49 ~~~~~~~~~~~~a~~~~~~~t~eL~~~~~~~~~~~~~~~~~l~~Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P~~lvItC  128 (179)
                      .+++-+++++..+.++++.+|+++.....      ....+.+++|++||++|+...+.++|++|+++++||+|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~n~~~~~~~~~~~p~~f~~la~gQ~P~~~vi~C   78 (239)
T d1ddza2           5 PLVQVTKGGESELDSTMEKLTAELVQQTP------GKLKEGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGC   78 (239)
T ss_dssp             CCCCSSSSCCCHHHHHHHHHHHHHHTSCT------TCCCCCSSHHHHHHHHHHHHHHHHCTTHHHHHTTCCCCSEEEEEE
T ss_pred             CcceecccchhhHHhhhHhhhhhhhccch------hhHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhcCCCCCeEEEee
Confidence            46778889999999999999999976532      223357899999999999998889999999999999999999999


Q ss_pred             cCCCCCcccccCCCCCceeEEeecCCcCCCCCCCCcchHHHHHHHHHhhC
Q 030346          129 ADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVK  178 (179)
Q Consensus       129 sDSRV~pe~If~~~pGDlFVvRNiGNiV~~~d~~~~s~~AsLEYAV~~L~  178 (179)
                      |||||+|+.|||++|||+||+||+||+|+++|.   ++.++|||||.+|+
T Consensus        79 sDSRv~pe~if~~~~GdlFVvRNaGN~v~~~d~---~~~~sleyAv~~L~  125 (239)
T d1ddza2          79 ADSRVPANQIINLPAGEVFVHRNIANQCIHSDM---SFLSVLQYAVQYLK  125 (239)
T ss_dssp             TTCSSCHHHHTTCCTTSEEEEEETTCCCCTTCH---HHHHHHHHHHHTSC
T ss_pred             ecCCCCHHHHcCCCCCceEEEeeecCcCCCccc---hhhhhhhhhheecC
Confidence            999999999999999999999999999999874   68999999999997
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure