Citrus Sinensis ID: 030410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Secondary Structure (PSIPRED)
ccEEEEcccccccccccEEEEEEccccccccccccccccccccccccccccEEEcHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEcccccccccccccccccccEEEEEEccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEHHcccccccEEEEEEEcccccccccEEEEEcccccccccccccEEEccHHHHHHHHHccccccHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccHHccHcccccccccccccEEEEEcccHHHHHHcccccccccEEEEEEEccHHEHHEHcccc
Coil and Loop (DISEMBL)
MVVRIRlarfgcknkpfyrvmaadsrsprdgkhlevlgyynplpgqdsgkrmglnfDRVKYWLsvgaqpsdpvQRILFragllppppmvamgrkggprdtrpvdpmtgrvlekptnakqikaddicshmnGLDLAFVFMHCtsssilklqhmpvqgsneihicqikSKEYIQMVSGHF
Flexible Loop (DISEMBL)
mvvrirlarfgcknkpfyrvmaadsrsprdgkhLEVLGYYNplpgqdsgkrMGLNFDRVKYWLSVGAQPSDPVQRILFRAgllppppmvamgrkggprdtrpvdpmtgrvlekptnakqikadDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Low Complexity Region (SEG)
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Disordered region (IsUnstruct)
**VRIRLARFGCKNKPFYRVMA**********HLEVLGYYNPLPG***GKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL************************************IKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQ******
Disordered Region (DISOPRED)
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP****************************************************VFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGH*
Disordered Region (DISEMBL)
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Disordered Region (DISPRO)
*VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP*************************************DDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQHMPVQGSNEIHICQIKSKEYIQMVSGHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q16AN8	122	30S ribosomal protein S16	yes	no	0.460	0.672	0.573	4e-21
A5V9P7	154	30S ribosomal protein S16	yes	no	0.460	0.532	0.573	4e-21
A4WNX7	116	30S ribosomal protein S16	yes	no	0.460	0.706	0.573	7e-21
A8LMC0	130	30S ribosomal protein S16	yes	no	0.471	0.646	0.547	8e-21
Q5LNF2	121	30S ribosomal protein S16	yes	no	0.466	0.685	0.554	9e-21
Q3IZ02	116	30S ribosomal protein S16	yes	no	0.460	0.706	0.560	1e-20
A3PN95	116	30S ribosomal protein S16	yes	no	0.460	0.706	0.560	1e-20
Q92L43	124	30S ribosomal protein S16	yes	no	0.483	0.693	0.511	2e-20
B9JUC4	123	30S ribosomal protein S16	yes	no	0.460	0.666	0.524	2e-20
Q1RGQ5	111	30S ribosomal protein S16	yes	no	0.477	0.765	0.517	2e-20

>sp|Q16AN8|RS16_ROSDO 30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS +R+ ++ +RV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGL 82
          YWL  GAQP+D V R+L  AGL
Sbjct: 61 YWLGQGAQPTDRVARMLEAAGL 82

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

>sp|A5V9P7|RS16_SPHWW 30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M V IRLAR G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ DR K
Sbjct: 1  MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAK 60

Query: 61 YWLSVGAQPSDPVQRILFRAGL 82
          +WLSVGAQP+D V R L  AG+
Sbjct: 61 HWLSVGAQPTDRVARFLDAAGV 82

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) (taxid: 392499)

>sp|A4WNX7|RS16_RHOS5 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1

 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +DS  R+ +N +RV+
Sbjct: 1  MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGL 82
          YWLS GAQP+D V R L  AGL
Sbjct: 61 YWLSQGAQPTDRVARFLEAAGL 82

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102)

>sp|A8LMC0|RS16_DINSH 30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 63/84 (75%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS  R+ ++ +RV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGLLP 84
          YWL  GA+P+D V R+L  A +LP
Sbjct: 61 YWLGEGAKPTDRVARMLEAAEVLP 84

Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

>sp|Q5LNF2|RS16_RUEPO 30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpsP PE=3 SV=1

 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS +R+ ++ +RV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGLL 83
          YWLS GAQ +D V R+L  AG++
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|Q3IZ02|RS16_RHOS4 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +DS  R+ +N +RV+
Sbjct: 1  MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGL 82
          YWL+ GAQP+D V R L  AGL
Sbjct: 61 YWLAQGAQPTDRVARFLEAAGL 82

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|A3PN95|RS16_RHOS1 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +DS  R+ +N +RV+
Sbjct: 1  MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGL 82
          YWL+ GAQP+D V R L  AGL
Sbjct: 61 YWLAQGAQPTDRVARFLEAAGL 82

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) (taxid: 349101)

>sp|Q92L43|RS16_RHIME 30S ribosomal protein S16 OS=Rhizobium meliloti (strain 1021) GN=rpsP PE=3 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 64/86 (74%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV+
Sbjct: 1  MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQ 60

Query: 61 YWLSVGAQPSDPVQRILFRAGLLPPP 86
          +W++ GAQP+D V R L +AGL   P
Sbjct: 61 HWIAQGAQPTDRVMRFLDQAGLAKRP 86

Rhizobium meliloti (strain 1021) (taxid: 266834)

>sp|B9JUC4|RS16_AGRVS 30S ribosomal protein S16 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsP PE=3 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 63/82 (76%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ G+D+ KR+ LN DR+K
Sbjct: 1  MSLKIRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIK 60

Query: 61 YWLSVGAQPSDPVQRILFRAGL 82
           W++ GAQP+D V + L  AGL
Sbjct: 61 EWIAKGAQPTDRVLKFLAEAGL 82

Agrobacterium vitis (strain S4 / ATCC BAA-846) (taxid: 311402)

>sp|Q1RGQ5|RS16_RICBR 30S ribosomal protein S16 OS=Rickettsia bellii (strain RML369-C) GN=rpsP PE=3 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 61/85 (71%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M V+IRLAR G K +PFYRV+ A++ +PRDG  LE +G YNP+  +DS +R+ L  DRV+
Sbjct: 1  MAVKIRLARGGAKKRPFYRVVVANATAPRDGDFLEKVGTYNPMLAKDSNERVVLKADRVE 60

Query: 61 YWLSVGAQPSDPVQRILFRAGLLPP 85
          YWL  GA+P+D V R + +AG+  P
Sbjct: 61 YWLKSGAKPTDRVARFIEQAGIALP 85

Rickettsia bellii (strain RML369-C) (taxid: 336407)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
225444887	136	PREDICTED: 30S ribosomal protein S16 [Vi	0.696	0.911	0.873	3e-57
449530225	127	PREDICTED: 30S ribosomal protein S16-lik	0.691	0.968	0.849	2e-56
351727417	132	uncharacterized protein LOC100499851 [Gl	0.679	0.916	0.861	1e-55
351721257	132	uncharacterized protein LOC100305630 [Gl	0.668	0.901	0.876	2e-55
190609947	136	30S ribosomal protein S16 [Populus alba]	0.629	0.823	0.919	4e-55
224118446	136	predicted protein [Populus trichocarpa]	0.629	0.823	0.910	9e-55
15241991	135	ribosomal protein S16 family protein [Ar	0.685	0.903	0.822	2e-54
21554119	135	30S ribosomal protein S16 [Arabidopsis t	0.685	0.903	0.822	2e-54
297790240	135	ribosomal protein S16 family protein [Ar	0.685	0.903	0.822	3e-54
350535318	132	30S ribosomal protein S16 [Solanum lycop	0.617	0.833	0.909	5e-54

>gi|225444887|ref|XP_002281553.1| PREDICTED: 30S ribosomal protein S16 [Vitis vinifera] gi|297738652|emb|CBI27897.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 118/126 (93%), Gaps = 2/126 (1%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+RFGCKN+PFYRVMAADSRSPRDGKHLEVLGYYNPLPGQD GKRMGLNFDRVK
Sbjct: 1   MVVRIRLSRFGCKNRPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFDRVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL--EKPTNAK 118
           YWLSVGAQPSDPVQ+ILFRAGLLPPPPMVAMGRKGG RDTRPVDP+TGR+L   KPT+ +
Sbjct: 61  YWLSVGAQPSDPVQQILFRAGLLPPPPMVAMGRKGGHRDTRPVDPLTGRILTPNKPTDVE 120

Query: 119 QIKADD 124
           Q K D+
Sbjct: 121 QPKDDE 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530225|ref|XP_004172096.1| PREDICTED: 30S ribosomal protein S16-like [Cucumis sativus]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 117/126 (92%), Gaps = 3/126 (2%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+RFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQD GKRMGLNF+RVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL---EKPTNA 117
           YWLSVGAQPSDPVQRILFR+GLLPPPPMVAMGRKGGPRDTRPVDP++GR +   +KPT+ 
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 118 KQIKAD 123
              +AD
Sbjct: 121 SNGEAD 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727417|ref|NP_001236904.1| uncharacterized protein LOC100499851 [Glycine max] gi|255627125|gb|ACU13907.1| unknown [Glycine max]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/123 (86%), Positives = 114/123 (92%), Gaps = 2/123 (1%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+R GCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQD GKRMGLNFDRVK
Sbjct: 1   MVVRIRLSRLGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFDRVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL--EKPTNAK 118
           YWLSVGAQPS+PV+R+LFRAG+LPPPPMVAMGRKGGPRDTRPVD +TGRVL  EKP +A 
Sbjct: 61  YWLSVGAQPSEPVERLLFRAGMLPPPPMVAMGRKGGPRDTRPVDALTGRVLHQEKPADAN 120

Query: 119 QIK 121
             +
Sbjct: 121 NTE 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721257|ref|NP_001238227.1| uncharacterized protein LOC100305630 [Glycine max] gi|255626139|gb|ACU13414.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 112/121 (92%), Gaps = 2/121 (1%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+R GCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQD GKRMGLNFDRVK
Sbjct: 1   MVVRIRLSRLGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFDRVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVL--EKPTNAK 118
           YWLSVGAQPS+PV+R+LFRAG+LPPPPMVAMGRKGGPRDTRPVD +TGRVL  EK  NA 
Sbjct: 61  YWLSVGAQPSEPVERLLFRAGMLPPPPMVAMGRKGGPRDTRPVDALTGRVLNQEKAANAN 120

Query: 119 Q 119
            
Sbjct: 121 N 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190609947|dbj|BAG49074.1| 30S ribosomal protein S16 [Populus alba]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 107/112 (95%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+RFGC NKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQD GKRMGLNF+RVK
Sbjct: 1   MVVRIRLSRFGCSNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLE 112
           YWLSVGAQPS+PVQRILFRAGLLPPPPM+ MGRKGGPRDTRPVDPMTGR L 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGLLPPPPMMVMGRKGGPRDTRPVDPMTGRFLS 112

Source: Populus alba

Species: Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118446|ref|XP_002331484.1| predicted protein [Populus trichocarpa] gi|222873562|gb|EEF10693.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 102/112 (91%), Positives = 107/112 (95%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+RFGC NKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQD GKRMGLNF+RVK
Sbjct: 1   MVVRIRLSRFGCSNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLE 112
           YWLSVGAQPS+PVQRILFRAG+LPPPPM+ MGRKGGPRDTRPVDPMTGR L 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMMVMGRKGGPRDTRPVDPMTGRFLS 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241991|ref|NP_200504.1| ribosomal protein S16 family protein [Arabidopsis thaliana] gi|8777434|dbj|BAA97024.1| 30S ribosomal protein S16 [Arabidopsis thaliana] gi|14334472|gb|AAK59434.1| putative 30S ribosomal protein S16 [Arabidopsis thaliana] gi|16323518|gb|AAL15253.1| putative 30S ribosomal protein S16 [Arabidopsis thaliana] gi|332009442|gb|AED96825.1| ribosomal protein S16 family protein [Arabidopsis thaliana]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 113/124 (91%), Gaps = 2/124 (1%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+RFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQD GKRMGL FDR+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 120
           YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVD--AENKTV 118

Query: 121 KADD 124
            A+D
Sbjct: 119 NAND 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554119|gb|AAM63199.1| 30S ribosomal protein S16 [Arabidopsis thaliana]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 113/124 (91%), Gaps = 2/124 (1%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+RFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQD GKRMGL FDR+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 120
           YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVD--AENKTV 118

Query: 121 KADD 124
            A+D
Sbjct: 119 NAND 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790240|ref|XP_002863022.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297793207|ref|XP_002864488.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297308822|gb|EFH39281.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310323|gb|EFH40747.1| ribosomal protein S16 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 112/124 (90%), Gaps = 2/124 (1%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVRIRL+RFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQD GKRMGL FDR+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 120
           YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVD--AENKTV 118

Query: 121 KADD 124
            A D
Sbjct: 119 NASD 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535318|ref|NP_001234444.1| 30S ribosomal protein S16 [Solanum lycopersicum] gi|190609945|dbj|BAG49073.1| 30S ribosomal protein S16 [Solanum lycopersicum]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 108/110 (98%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           MVVR+RL+RFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQD GKRMGLNFDR+K
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFDRLK 60

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRV 110
           YWLSVGAQPSDPVQR+LFRAG+LPPPPM+AMG+KGGPRDTR VDPMTGR+
Sbjct: 61  YWLSVGAQPSDPVQRLLFRAGVLPPPPMLAMGQKGGPRDTRLVDPMTGRI 110

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2164585	135	AT5G56940 [Arabidopsis thalian	0.685	0.903	0.822	8.9e-54
TAIR|locus:2139624	113	SSR16 "small subunit ribosomal	0.623	0.982	0.598	1.7e-34
TIGR_CMR|SPO_3253	121	SPO_3253 "ribosomal protein S1	0.466	0.685	0.554	3.5e-20
UNIPROTKB|F1SU70	135	LOC100739849 "Uncharacterized	0.477	0.629	0.494	1.9e-19
RGD|1582995	135	Mrps16 "mitochondrial ribosoma	0.477	0.629	0.470	8.3e-19
UNIPROTKB|P82915	135	MRPS16 "28S ribosomal protein	0.477	0.629	0.470	1.1e-18
UNIPROTKB|Q9Y3D3	137	MRPS16 "28S ribosomal protein	0.477	0.620	0.470	1.4e-18
UNIPROTKB|J9NS54	199	MRPS16 "Uncharacterized protei	0.477	0.427	0.470	1.7e-18
UNIPROTKB|E1C907	136	MRPS16 "Uncharacterized protei	0.483	0.632	0.511	2.8e-18
UNIPROTKB|P66444	90	rpsP "30S ribosomal protein S1	0.449	0.888	0.542	2.8e-18

TAIR|locus:2164585 AT5G56940 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 102/124 (82%), Positives = 113/124 (91%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
             MVVRIRL+RFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQD GKRMGL FDR+K
Sbjct:     1 MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query:    61 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI 120
             YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++     K +
Sbjct:    61 YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAEN--KTV 118

Query:   121 KADD 124
              A+D
Sbjct:   119 NAND 122

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2139624 SSR16 "small subunit ribosomal protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/112 (59%), Positives = 88/112 (78%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
             M V+IRLAR GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L FDR+K
Sbjct:     1 MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query:    61 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPMTGRVL 111
             YWLSVGAQP+D V+ +LFRAGL+PP PMV +G K G + T + V P+TG +L
Sbjct:    61 YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS;TAS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TIGR_CMR|SPO_3253 SPO_3253 "ribosomal protein S16" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
             M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS +R+ ++ +RV+
Sbjct:     1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query:    61 YWLSVGAQPSDPVQRILFRAGLL 83
             YWLS GAQ +D V R+L  AG++
Sbjct:    61 YWLSQGAQTTDRVARMLEAAGVV 83

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|F1SU70 LOC100739849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/85 (49%), Positives = 59/85 (69%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
             IRLA  GC N+PFYR++AA S+ PRDG+ +E LG Y+PLP     K + LNFDR+++W+ 
Sbjct:    19 IRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIG 78

Query:    65 VGAQPSDPVQRILFRAGLLPPPPMV 89
              GA  S PV+++L  +G  P  PM+
Sbjct:    79 CGAHLSKPVEKLLGLSGFYPLHPMM 103

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1582995 Mrps16 "mitochondrial ribosomal protein S16" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 40/85 (47%), Positives = 59/85 (69%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
             IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+ 
Sbjct:    19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78

Query:    65 VGAQPSDPVQRILFRAGLLPPPPMV 89
              GAQ S P++++L  +G  P  PM+
Sbjct:    79 CGAQLSKPMEKLLGLSGFFPLHPMM 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P82915 MRPS16 "28S ribosomal protein S16, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
             IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+P+P     K + LN DR+++W+ 
Sbjct:    19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIG 78

Query:    65 VGAQPSDPVQRILFRAGLLPPPPMV 89
              GA  S PV+++L  +G  P  PMV
Sbjct:    79 CGAHLSKPVEKLLGLSGFFPLHPMV 103

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
             IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN DR+++W+ 
Sbjct:    19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78

Query:    65 VGAQPSDPVQRILFRAGLLPPPPMV 89
              GA  S P++++L  AG  P  PM+
Sbjct:    79 CGAHLSKPMEKLLGLAGFFPLHPMM 103

GO:0006412 "translation" evidence=NAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J9NS54 MRPS16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 40/85 (47%), Positives = 58/85 (68%)

Query:     5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
             IRLA  GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP     K + LN +R+++W+ 
Sbjct:    83 IRLALSGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKIVALNLERIRHWIG 142

Query:    65 VGAQPSDPVQRILFRAGLLPPPPMV 89
              GA  S PV+R+L  +G  P  PM+
Sbjct:   143 CGAHLSKPVERLLGLSGFFPLHPMM 167

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E1C907 MRPS16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 44/86 (51%), Positives = 57/86 (66%)

Query:     3 VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
             V IR A  GC N+PFYR++AA S+  RDGK+LE LG  +PLP     K  GLN +R+++W
Sbjct:    17 VVIRFALGGCTNRPFYRIVAAHSKRARDGKYLEQLGCLDPLPNAHGEKVAGLNLERLRHW 76

Query:    63 LSVGAQPSDPVQRILFRAGLLPPPPM 88
             L  GAQ S P +++L  AG LP  PM
Sbjct:    77 LGCGAQLSRPAEKLLGLAGFLPLHPM 102

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

UNIPROTKB|P66444 rpsP "30S ribosomal protein S16" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/83 (54%), Positives = 58/83 (69%)

Query:     1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
             M V+IRL R G K KPFYR+  ADSRSPRDG+ +E +G YNPL  ++   ++ L  DRV 
Sbjct:     1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVL 57

Query:    61 YWLSVGAQPSDPVQRILFRAGLL 83
              WL+ GAQPSD V+ IL + G+L
Sbjct:    58 AWLANGAQPSDTVRNILSKEGVL 80

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016542001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (136 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015322001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)	•			•	•		•		0.988
	GSVIVG00033342001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)	•			•	•		•		0.986
	rps3	SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)	•			•	•		•		0.985
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•	•		•		0.985
	GSVIVG00015971001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (112 aa)	•			•			•		0.980
	GSVIVG00003076001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (340 aa)	•			•	•		•		0.977
	GSVIVG00008391001	SubName- Full=Chromosome undetermined scaffold_1415, whole genome shotgun sequence; (151 aa)	•			•	•		•		0.970
	rps2	ribosomal protein S2 (180 aa)	•			•	•		•		0.967
	GSVIVG00021597001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (488 aa)	•			•			•		0.962
	GSVIVG00035173001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (116 aa)	•			•	•		•		0.945

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
TIGR00002	78	TIGR00002, S16, ribosomal protein S16	3e-38
PRK00040	75	PRK00040, rpsP, 30S ribosomal protein S16; Reviewe	1e-36
COG0228	87	COG0228, RpsP, Ribosomal protein S16 [Translation,	3e-36
pfam00886	61	pfam00886, Ribosomal_S16, Ribosomal protein S16	7e-32
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	5e-30
PRK14520	155	PRK14520, rpsP, 30S ribosomal protein S16; Provisi	6e-26
PRK14525	88	PRK14525, rpsP, 30S ribosomal protein S16; Provisi	3e-23
PRK14524	94	PRK14524, rpsP, 30S ribosomal protein S16; Provisi	3e-21
CHL00005	82	CHL00005, rps16, ribosomal protein S16	2e-20
PRK14523	137	PRK14523, rpsP, 30S ribosomal protein S16; Provisi	7e-17
PRK14522	116	PRK14522, rpsP, 30S ribosomal protein S16; Provisi	7e-13

>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16

 Score =  125 bits (316), Expect = 3e-38
 Identities = 44/81 (54%), Positives = 61/81 (75%), Gaps = 3/81 (3%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          V+IRL R G K +PFYR++ ADSRS RDG+++E LG+YNPL  +    R+ LN +R+KYW
Sbjct: 1  VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPLTKES---RVKLNVERIKYW 57

Query: 63 LSVGAQPSDPVQRILFRAGLL 83
          LS GAQP+D V+ +L +AG+ 
Sbjct: 58 LSKGAQPTDTVRNLLKKAGVF 78

This model describes ribosomal S16 of bacteria and organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 78

>gnl|CDD|234588 PRK00040, rpsP, 30S ribosomal protein S16; Reviewed

 Score =  121 bits (306), Expect = 1e-36
 Identities = 41/75 (54%), Positives = 58/75 (77%), Gaps = 1/75 (1%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          V+IRLAR G K +PFYR++ ADSRSPRDG+ +E +G+YNPL  + + + + L+ +RV YW
Sbjct: 2  VKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNPLA-KPAEEEVKLDEERVLYW 60

Query: 63 LSVGAQPSDPVQRIL 77
          L  GAQP+D V+R+L
Sbjct: 61 LGQGAQPTDTVRRLL 75

Length = 75

>gnl|CDD|223306 COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

 Score =  120 bits (304), Expect = 3e-36
 Identities = 47/80 (58%), Positives = 62/80 (77%), Gaps = 2/80 (2%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          V+IRLAR G K +PFYR++ ADSRSPRDG+ +E LG YNPL G++   +  L+ +R+ YW
Sbjct: 2  VKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLLGKEERVK--LDEERILYW 59

Query: 63 LSVGAQPSDPVQRILFRAGL 82
          LS GAQPSD V+R+L +AGL
Sbjct: 60 LSQGAQPSDTVRRLLKKAGL 79

Length = 87

>gnl|CDD|216173 pfam00886, Ribosomal_S16, Ribosomal protein S16

 Score =  108 bits (273), Expect = 7e-32
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 9  RFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQ 68
          R G K +PFYR++ ADSRSPRDG+ +E LG YNP+        + L+ +R+KYWL  GAQ
Sbjct: 1  RGGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPIAKPQE-PEVKLDEERIKYWLGKGAQ 59

Query: 69 PS 70
          P+
Sbjct: 60 PT 61

Length = 61

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score =  107 bits (270), Expect = 5e-30
 Identities = 44/85 (51%), Positives = 54/85 (63%), Gaps = 7/85 (8%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL--PGQDSGKRMGLNFDR 58
          M V+IRL R G K K FY ++AADSR+PRDGK +E +G YNP   P       + LNFDR
Sbjct: 1  MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPAT-----VDLNFDR 55

Query: 59 VKYWLSVGAQPSDPVQRILFRAGLL 83
            YWL  GAQP+D  + IL   G+L
Sbjct: 56 AVYWLMNGAQPTDTARNILSYEGVL 80

Length = 186

>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional

 Score = 96.7 bits (241), Expect = 6e-26
 Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M V+I+L R G    P YR++ ADSR+ RDG+ +E +G Y+P   ++    + ++ +R +
Sbjct: 1  MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHP---KEEPSLIEIDSERAQ 57

Query: 61 YWLSVGAQPSDPVQRIL 77
          YWLSVGAQP++PV  +L
Sbjct: 58 YWLSVGAQPTEPVLALL 74

Length = 155

>gnl|CDD|172991 PRK14525, rpsP, 30S ribosomal protein S16; Provisional

 Score = 87.4 bits (216), Expect = 3e-23
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M V +RL+R G    PFY V+A DSR+ RDGK+LE +G Y+P       +R+ L  +R++
Sbjct: 1  MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDP---TKRPERIELKVERIE 57

Query: 61 YWLSVGAQPSDPVQRILFRAGLLPPPPMV 89
          +WL  GA+PS  V  IL RA     P   
Sbjct: 58 HWLKAGAKPSQTVAMILKRAAKAAAPAAP 86

Length = 88

>gnl|CDD|172990 PRK14524, rpsP, 30S ribosomal protein S16; Provisional

 Score = 82.6 bits (204), Expect = 3e-21
 Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
          +VRIRL R G + +PFYR++  DSR  RDG ++E LGYYNPL        + ++ +R   
Sbjct: 1  MVRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPL---KEPYEIKVDVERAVE 57

Query: 62 WLSVGAQPSDPVQRILFRAGLL 83
          W+  GAQPSD V+ IL + G++
Sbjct: 58 WILKGAQPSDTVRDILRKFGVM 79

Length = 94

>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16

 Score = 80.1 bits (198), Expect = 2e-20
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          V++RL R G K +  YR++A D RS R+G+ LE +G+Y+P+  Q       LN   + Y+
Sbjct: 2  VKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTY-----LNVPAILYF 56

Query: 63 LSVGAQPSDPVQRILFRAGLL 83
          L  GAQP++ V  IL +A + 
Sbjct: 57 LEKGAQPTETVYDILKKAEVF 77

Length = 82

>gnl|CDD|172989 PRK14523, rpsP, 30S ribosomal protein S16; Provisional

 Score = 72.6 bits (177), Expect = 7e-17
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVK 60
          +V IRLAR G K  PFY ++ AD R PRDG+ +E +GYYNP+  GQD   R+ L  +R+ 
Sbjct: 1  MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDI--RLQLEKERIS 58

Query: 61 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKG 95
          +WL+ GAQ S  V+ ++ +    P        RKG
Sbjct: 59 HWLNQGAQTSLRVKHLIKKLEKSPEEAQKGGMRKG 93

Length = 137

>gnl|CDD|172988 PRK14522, rpsP, 30S ribosomal protein S16; Provisional

 Score = 61.5 bits (149), Expect = 7e-13
 Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
          M ++IRL + G +N   YR++ AD  SPRDGK++E+LG+Y+P     S +   L  +R+ 
Sbjct: 1  MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP----HSEQNYQLKSERIF 56

Query: 61 YWLSVGAQPSD 71
          YWL+ GA+ ++
Sbjct: 57 YWLNQGAELTE 67

Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
KOG3419	112	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PRK14525	88	rpsP 30S ribosomal protein S16; Provisional	100.0
PRK14521	186	rpsP 30S ribosomal protein S16; Provisional	100.0
PRK14524	94	rpsP 30S ribosomal protein S16; Provisional	100.0
TIGR00002	78	S16 ribosomal protein S16. This model describes ri	100.0
CHL00005	82	rps16 ribosomal protein S16	100.0
PRK14522	116	rpsP 30S ribosomal protein S16; Provisional	100.0
COG0228	87	RpsP Ribosomal protein S16 [Translation, ribosomal	100.0
PRK14520	155	rpsP 30S ribosomal protein S16; Provisional	100.0
PRK00040	75	rpsP 30S ribosomal protein S16; Reviewed	100.0
PRK14523	137	rpsP 30S ribosomal protein S16; Provisional	100.0
PF00886	62	Ribosomal_S16: Ribosomal protein S16; InterPro: IP	99.97

>KOG3419 consensus Mitochondrial/chloroplast ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-44  Score=279.49  Aligned_cols=107  Identities=61%  Similarity=1.021  Sum_probs=101.3

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHc
Q 030410            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA   80 (178)
Q Consensus         1 M~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~ka   80 (178)
                      |+|+|||+|+||||||||||||+|+|++||||+||+||+|||+++.++++.+.||+|||+|||++|||||+||.+||+++
T Consensus         1 ~~vkIRLar~GcknRPfY~Ivva~~r~~rdgk~iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~GAqpS~tv~~Ll~~a   80 (112)
T KOG3419|consen    1 MVVKIRLARFGCKNRPFYRIVVADSRKRRDGKPIEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVGAQPSDTVEELLGKA   80 (112)
T ss_pred             CeEEEeehhcCccCCCeeEEEEeeccccccCCchhheecccCCCCCCCCcceeecHHHHHHHHhcCCccChHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCCCCC-CCCCCCC
Q 030410           81 GLLPPPPMVAMGRKGGPRDT-RPVDPMT  107 (178)
Q Consensus        81 Gllp~~p~~~~~~kg~~~~~-~p~~~~~  107 (178)
                      |++|.+|+..+.++.+.+.. ++++|.+
T Consensus        81 Gl~p~~p~~~~~a~~~rr~~a~~~~~~~  108 (112)
T KOG3419|consen   81 GLFPIHPMTFMNAKRNRRLTAEQVLPVE  108 (112)
T ss_pred             CCCCCchhhhhccccchhhhhhhccchh
Confidence            99999999999999988776 4455544

>PRK14525 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=2.5e-42  Score=257.96  Aligned_cols=84  Identities=45%  Similarity=0.779  Sum_probs=79.6

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHc
Q 030410            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA   80 (178)
Q Consensus         1 M~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~ka   80 (178)
                      |+|+|||+|+|+||+|||||||+|+|++|||+|||+||+|||+.++   +.+.||+|||+|||++|||||+||++||+++
T Consensus         1 M~VkIRL~R~G~k~~P~YrIVv~dsr~~RdGk~IE~lG~YnP~~~~---~~i~ln~eri~~WL~~GAqpT~tV~~Ll~~~   77 (88)
T PRK14525          1 MAVVLRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPTKRP---ERIELKVERIEHWLKAGAKPSQTVAMILKRA   77 (88)
T ss_pred             CcEEEehhhCCCCCCCeEEEEEeecCCCCCCCceeEEecccCCCCC---ceEEEcHHHHHHHHHCCCccCHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999753   5899999999999999999999999999999


Q ss_pred             CCCCCCC
Q 030410           81 GLLPPPP   87 (178)
Q Consensus        81 Gllp~~p   87 (178)
                      |+.+++|
T Consensus        78 g~~~~~~   84 (88)
T PRK14525         78 AKAAAPA   84 (88)
T ss_pred             CccCCCC
Confidence            9986543

>PRK14521 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=4e-41  Score=279.41  Aligned_cols=94  Identities=48%  Similarity=0.776  Sum_probs=87.9

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHc
Q 030410            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA   80 (178)
Q Consensus         1 M~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~ka   80 (178)
                      |+|||||+|+|+|++|||||||+|+|++|||||||+||||||+.++   ..|.||+|||+|||++|||||+||++||+++
T Consensus         1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGk~IE~lG~YnP~~~~---~~i~Ln~eRi~~WL~~GAqPTdtV~~lL~~~   77 (186)
T PRK14521          1 MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNP---ATVDLNFDRAVYWLMNGAQPTDTARNILSYE   77 (186)
T ss_pred             CcEeehhhhCCCCCCCeEEEEEEeCCCCCCCCceeeeeecCCCCCC---ceEEEcHHHHHHHHHCCCcCCHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999764   5899999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCC
Q 030410           81 GLLPPPPMVAMGRKGGP   97 (178)
Q Consensus        81 Gllp~~p~~~~~~kg~~   97 (178)
                      |+|++++...+.+||..
T Consensus        78 g~~~k~~~~~~~~kg~~   94 (186)
T PRK14521         78 GVLLKKHLLGGVAKGAF   94 (186)
T ss_pred             ccchhhhhhcccCCCcc
Confidence            99998887776666644

>PRK14524 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=4.9e-41  Score=253.43  Aligned_cols=86  Identities=43%  Similarity=0.789  Sum_probs=80.0

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      ||+|||+|+|+|++|||||||+|+|++|||+|||+||+|||+.++   ..+.||+||++|||++|||||+||.+||+++|
T Consensus         1 mVkIRL~R~G~KkrPfYrIVvadsr~~RdGk~iE~lG~YnP~~~~---~~i~l~~eri~~Wl~~GAqpT~tV~~Llkk~g   77 (94)
T PRK14524          1 MVRIRLTRMGKRKQPFYRIVVVDSRKRRDGAYIESLGYYNPLKEP---YEIKVDVERAVEWILKGAQPSDTVRDILRKFG   77 (94)
T ss_pred             CcEEhhccCCCCCCCeEEEEEEecCCCCCCCceeEeeecCCCCCC---ceEEEcHHHHHHHHHcCCccCHHHHHHHHHcc
Confidence            589999999999999999999999999999999999999999764   58999999999999999999999999999999


Q ss_pred             CCCCCCccc
Q 030410           82 LLPPPPMVA   90 (178)
Q Consensus        82 llp~~p~~~   90 (178)
                      ++++....+
T Consensus        78 ~~~~~~~~~   86 (94)
T PRK14524         78 VMKKVHEIK   86 (94)
T ss_pred             chhhhHHhh
Confidence            987655443

>TIGR00002 S16 ribosomal protein S16

Probab=100.00  E-value=1.2e-40  Score=243.69  Aligned_cols=78  Identities=56%  Similarity=1.025  Sum_probs=75.1

Q ss_pred             eEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcCC
Q 030410            3 VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL   82 (178)
Q Consensus         3 VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaGl   82 (178)
                      |+|||+|+|+||+|||||||+|+|++|||||||+||+|||++++   +.+.||+||++|||++|||||+||++||+++|+
T Consensus         1 vkIRL~R~G~k~~PfYrIVv~d~r~~RdGk~iE~lG~YnP~~~~---~~i~l~~~ri~~Wl~~GAqps~tV~~Ll~~~g~   77 (78)
T TIGR00002         1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPLTKE---SRVKLNVERIKYWLSKGAQPTDTVRNLLKKAGV   77 (78)
T ss_pred             CEEecccCCCCCCCeEEEEEEecCCCCCCCceeEeeeccCCCCC---cEEEEcHHHHHHHHHCCCccCHHHHHHHHHccC
Confidence            79999999999999999999999999999999999999999864   689999999999999999999999999999997


Q ss_pred             C
Q 030410           83 L   83 (178)
Q Consensus        83 l   83 (178)
                      +
T Consensus        78 ~   78 (78)
T TIGR00002        78 F   78 (78)
T ss_pred             C
Confidence            5

This model describes ribosomal S16 of bacteria and organelles.

>CHL00005 rps16 ribosomal protein S16

Probab=100.00  E-value=1.1e-40  Score=246.34  Aligned_cols=79  Identities=39%  Similarity=0.731  Sum_probs=75.3

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      ||+|||+|+|+|++|||||||+|+|++|||+|||+||+|||+.+     .+.||+||++|||++|||||+||++||+++|
T Consensus         1 ~vkIRL~R~G~kk~P~YrIVvadsr~~RdGk~iE~lG~YnP~~~-----~~~ln~eri~~Wl~~GAqpt~tV~~Ll~~~g   75 (82)
T CHL00005          1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKN-----QTYLNVPAILYFLEKGAQPTETVYDILKKAE   75 (82)
T ss_pred             CeEEecccCCCCCCCeEEEEEEeCCCCCCCcceeEeeeccCCCc-----ccEEeHHHHHHHHHCcCccCHHHHHHHHHcC
Confidence            58999999999999999999999999999999999999999864     5799999999999999999999999999999


Q ss_pred             CCCC
Q 030410           82 LLPP   85 (178)
Q Consensus        82 llp~   85 (178)
                      ++++
T Consensus        76 ~~~~   79 (82)
T CHL00005         76 VFKE   79 (82)
T ss_pred             chhh
Confidence            8765

>PRK14522 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=4.3e-40  Score=256.69  Aligned_cols=87  Identities=33%  Similarity=0.641  Sum_probs=82.0

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHH-
Q 030410            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFR-   79 (178)
Q Consensus         1 M~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~k-   79 (178)
                      |+|+|||+|+|+||+|||||||+|+|++|||+|||+||||||+.+    +.+.||+|||+|||++|||||+||.+||++ 
T Consensus         1 MmVkIRLaR~G~KkrPfYrIVVaDsR~~RDGk~IE~lG~YdP~~~----~~v~Ln~eRi~yWL~~GAqPS~tV~~LLkk~   76 (116)
T PRK14522          1 MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSE----QNYQLKSERIFYWLNQGAELTEKAGALVKQG   76 (116)
T ss_pred             CcEEEecccCCCCCCCeEEEEEeecCCCCCCCcceeeeccCCCCC----CceEECHHHHHHHHHCCCccCHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999875    379999999999999999999999999999 


Q ss_pred             -cCCCCCCCcccc
Q 030410           80 -AGLLPPPPMVAM   91 (178)
Q Consensus        80 -aGllp~~p~~~~   91 (178)
                       +|++++....+-
T Consensus        77 ~~Gi~~~~~~~k~   89 (116)
T PRK14522         77 APGVYSELMAKKV   89 (116)
T ss_pred             hcccchhHHHHHH
Confidence             699998776553

>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.9e-40  Score=244.33  Aligned_cols=78  Identities=59%  Similarity=1.017  Sum_probs=74.4

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      ||||||+|+|+|++|||||||+|||+||||+|||.||+|||+.  +.+..+.||.||+.|||++||||||||++||+++|
T Consensus         1 ~vkIRL~R~G~kk~P~YrIVVaDsrs~RDGr~IE~lG~ynP~~--~~~~~v~l~~eri~~Wl~~GAqpSdtV~~ll~~~g   78 (87)
T COG0228           1 MVKIRLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLL--GKEERVKLDEERILYWLSQGAQPSDTVRRLLKKAG   78 (87)
T ss_pred             CeEEehhhCCCccCCeEEEEEeccCCCCCCcchhhhcccCCCC--CccceEEEcHHHHHHHHHcCCcccHHHHHHHHHhh
Confidence            5899999999999999999999999999999999999999977  33468999999999999999999999999999998

>PRK14520 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=1e-39  Score=264.78  Aligned_cols=82  Identities=41%  Similarity=0.764  Sum_probs=78.5

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHc
Q 030410            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA   80 (178)
Q Consensus         1 M~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~ka   80 (178)
                      |+|||||+|+|+|++|||||||+|+|++|||+|||+||+|||+.++   ..|.||++|++|||++|||||+||.+||+++
T Consensus         1 MaVkIRL~R~G~kk~PfYrIVVaDsR~~RDGk~IE~lG~YnP~~~~---~~i~ln~eRi~yWL~~GAQPT~~V~~LLk~~   77 (155)
T PRK14520          1 MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEP---SLIEIDSERAQYWLSVGAQPTEPVLALLKIT   77 (155)
T ss_pred             CcEEehhhhCCCCCCCeEEEEEeecCCCCCCCceeeeeccCCCCCC---ceEEEcHHHHHHHHHCCCccCHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999998764   5899999999999999999999999999999


Q ss_pred             CCCCC
Q 030410           81 GLLPP   85 (178)
Q Consensus        81 Gllp~   85 (178)
                      |++.+
T Consensus        78 g~~~~   82 (155)
T PRK14520         78 GDWQK   82 (155)
T ss_pred             chhhh
Confidence            98754

>PRK00040 rpsP 30S ribosomal protein S16; Reviewed

Probab=100.00  E-value=1.3e-39  Score=236.71  Aligned_cols=75  Identities=55%  Similarity=1.025  Sum_probs=71.1

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHH
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL   77 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL   77 (178)
                      ||+|||+|+|+||+|||||||+|+|++|||||||+||+|||++++ +++.+.||+|||+|||++|||||+||++||
T Consensus         1 ~vkIRL~R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~ydP~~~~-~~~~i~ln~eri~~Wl~~GAqpt~~V~~Ll   75 (75)
T PRK00040          1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNPLAKP-AEEEVKLDEERVLYWLGQGAQPTDTVRRLL   75 (75)
T ss_pred             CeEEhhhhCCCCCCCeEEEEEEecCCCCCCCceeEEeecCCCCCC-CcceEEEcHHHHHHHHHCCCccCHHHHHhC
Confidence            589999999999999999999999999999999999999999864 347999999999999999999999999986

>PRK14523 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=4.6e-39  Score=256.69  Aligned_cols=93  Identities=41%  Similarity=0.697  Sum_probs=83.4

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      ||+|||+|+|+||+|||||||+|+|++|||+|||+||||||+.++. ++.|.||++||+|||++|||||+||.+||+++|
T Consensus         1 mVkIRL~R~GrKkrPfYRIVVaDsRs~RDGK~IE~LG~YdP~~~~~-~~~i~Ln~eRi~yWL~~GAQPS~tV~~LLkkag   79 (137)
T PRK14523          1 MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQ-DIRLQLEKERISHWLNQGAQTSLRVKHLIKKLE   79 (137)
T ss_pred             CcEehhhcCCCCCCCeEEEEEEecCCCCCCCceeeeeecCCCCCCC-CceEEECHHHHHHHHHCCCccCHHHHHHHHHcc
Confidence            5899999999999999999999999999999999999999998653 358999999999999999999999999999999


Q ss_pred             CCCCCCccccccCC
Q 030410           82 LLPPPPMVAMGRKG   95 (178)
Q Consensus        82 llp~~p~~~~~~kg   95 (178)
                      +++......+.++|
T Consensus        80 ~~~~~~~~~g~~~~   93 (137)
T PRK14523         80 KSPEEAQKGGMRKG   93 (137)
T ss_pred             cchHHHHhcccccC
Confidence            88876654433443

>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=2.5e-32  Score=191.45  Aligned_cols=62  Identities=61%  Similarity=1.217  Sum_probs=59.8

Q ss_pred             cCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccC
Q 030410            9 RFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPS   70 (178)
Q Consensus         9 R~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPT   70 (178)
                      |+|+|++|||||||+|+|++|||++||+||+|||++++.+++.+.||+|||+|||++|||||
T Consensus         1 R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~YdP~~~~~~~~~~~l~~eri~~Wl~~GAqpT   62 (62)
T PF00886_consen    1 RMGRKKRPFYRIVVADSRSPRDGKFIEELGFYDPIPNPDEEKQIKLNFERIKYWLSKGAQPT   62 (62)
T ss_dssp             EESSTTEEEEEEEEEETTSSTTSSESEEEEEEETTSSSSSSTSEEETHHHHHHHHHTTEEEE
T ss_pred             CCCCCCCCeEEEEEEeCCcccccchhhccceEcCCCCCCCceeEEeCHHHHHHHHHcCcCCC
Confidence            78999999999999999999999999999999999987667899999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
1emw_A	88	Solution Structure Of The Ribosomal Protein S16 Fro		9e-18
3fic_P	84	T. Thermophilus 70s Ribosome In Complex With Mrna,		9e-18
1pns_P	83	Crystal Structure Of A Streptomycin Dependent Ribos		1e-17
1jgo_S	91	Crystal Structure Of The Ribosome At 5.5 A Resoluti		5e-16
1p6g_P	82	Real Space Refined Coordinates Of The 30s Subunit F		2e-13
3fih_P	80	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		2e-13
2gy9_P	78	Structure Of The 30s Subunit Of A Pre-Translocation		2e-13
3bn0_A	112	The Ribosomal Protein S16 From Aquifex Aeolicus Len		7e-12
3bbn_P	88	Homology Model For The Spinach Chloroplast 30s Subu		5e-09

>pdb|1EMW|A Chain A, Solution Structure Of The Ribosomal Protein S16 From Thermus Thermophilus Length = 88

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
          +V+IRLARFG K+ P YR++  D+R  RDGK++E +GYY+P   + +   + ++ +R +Y
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPR--KTTPDWLKVDVERARY 58
Query: 62 WLSVGAQPSDPVQRILFRAGLL 83
          WLSVGAQP+D  +R+L +AG+ 
Sbjct: 59 WLSVGAQPTDTARRLLRQAGVF 80

>pdb|3FIC|P Chain P, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 84

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
          +V+IRLARFG K+ P YR++  D+R  RDGK++E +GYY+P   + +   + ++ +R +Y
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPR--KTTPDWLKVDVERARY 58
Query: 62 WLSVGAQPSDPVQRILFRAGLL 83
          WLSVGAQP+D  +R+L +AG+ 
Sbjct: 59 WLSVGAQPTDTARRLLRQAGVF 80

>pdb|1PNS|P Chain P, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 83

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
          +V+IRLARFG K+ P YR++  D+R  RDGK++E +GYY+P   + +   + ++ +R +Y
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPR--KTTPDWLKVDVERARY 58
Query: 62 WLSVGAQPSDPVQRILFRAGLL 83
          WLSVGAQP+D  +R+L +AG+ 
Sbjct: 59 WLSVGAQPTDTARRLLRQAGVF 80

>pdb|1P6G|P Chain P, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 82

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQ-DSGKRMGLNFDRVK 60
          +V IRLAR G K +PFY+V+ ADSR+ R+G+ +E +G++NP+  + + G R  L+ DR+ 
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTR--LDLDRIA 58
Query: 61 YWLSVGAQPSDPVQRIL 77
          +W+  GA  SD V  ++
Sbjct: 59 HWVGQGATISDRVAALI 75

>pdb|3FIH|P Chain P, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 80

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQ-DSGKRMGLNFDRVK 60
          +V IRLAR G K +PFY+V+ ADSR+ R+G+ +E +G++NP+  + + G R  L+ DR+ 
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTR--LDLDRIA 58
Query: 61 YWLSVGAQPSDPVQRIL 77
          +W+  GA  SD V  ++
Sbjct: 59 HWVGQGATISDRVAALI 75

>pdb|2GY9|P Chain P, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 78

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQ-DSGKRMGLNFDRVK 60
          +V IRLAR G K +PFY+V+ ADSR+ R+G+ +E +G++NP+  + + G R  L+ DR+ 
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTR--LDLDRIA 58
Query: 61 YWLSVGAQPSDPVQRIL 77
          +W+  GA  SD V  ++
Sbjct: 59 HWVGQGATISDRVAALI 75

>pdb|3BN0|A Chain A, The Ribosomal Protein S16 From Aquifex Aeolicus Length = 112

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 1  MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNF--DR 58
          M VRIRLA+FG K+ P YR++  D++SPR+GK++++LG Y+P       +++ +N   ++
Sbjct: 1  MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDP------KRKVLINVYPEK 54
Query: 59 VKYWLSVGAQPSDPVQRILFRAGLL 83
          VK W+  G + S   + IL+  G+L
Sbjct: 55 VKEWVLKGVELSHRAKAILWNHGIL 79

>pdb|3BBN|P Chain P, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 88

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
          +V++RL R G K +  YR++A D RS R+G+ L+ +G+Y+P+  Q       LN   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKSQTY-----LNVPAILD 55
Query: 62 WLSVGAQPSDPVQRILFRAGLL 83
          +L  GAQP++ V  IL RA + 
Sbjct: 56 FLEKGAQPTETVYDILKRAEVF 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	1e-44
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	1e-41
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	5e-38
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	5e-38

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1 Length = 112

 Score =  142 bits (360), Expect = 1e-44
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 1   MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
           M VRIRLA+FG K+ P YR++  D++SPR+GK++++LG Y+P         + +  ++VK
Sbjct: 1   MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDP----KRKVLINVYPEKVK 56

Query: 61  YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRP 102
            W+  G + S   + IL+  G+L          K        
Sbjct: 57  EWVLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVF 98

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ... Length = 83

 Score =  133 bits (338), Expect = 1e-41
 Identities = 38/83 (45%), Positives = 60/83 (72%), Gaps = 2/83 (2%)

Query: 2  VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
          +V+IRLARFG K+ P YR++  D+R  RDGK++E +GYY+P   + +   + ++ +R +Y
Sbjct: 1  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPR--KTTPDWLKVDVERARY 58

Query: 62 WLSVGAQPSDPVQRILFRAGLLP 84
          WLSVGAQP+D  +R+L +AG+  
Sbjct: 59 WLSVGAQPTDTARRLLRQAGVFR 81

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 88

 Score =  124 bits (315), Expect = 5e-38
 Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          V++RL R G K +  YR++A D RS R+G+ L+ +G+Y+P+       +  LN   +  +
Sbjct: 2  VKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIK-----SQTYLNVPAILDF 56

Query: 63 LSVGAQPSDPVQRILFRAGLL 83
          L  GAQP++ V  IL RA + 
Sbjct: 57 LEKGAQPTETVYDILKRAEVF 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	100.0
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	100.0
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	100.0
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	100.0

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...

Probab=100.00  E-value=4.7e-43  Score=258.31  Aligned_cols=82  Identities=46%  Similarity=0.925  Sum_probs=78.0

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      ||||||+|+|+|++|||||||+|||++|||+|||+||||||+++.  ++.+.||+||++|||++||||||||++||+++|
T Consensus         1 MvkIRL~R~G~kkrPfYrIVvadsr~~RdGr~IE~lG~YnP~~~~--~~~i~l~~eri~~Wl~~GAqptdtV~~ll~~~g   78 (83)
T 3pys_P            1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVGAQPTDTARRLLRQAG   78 (83)
T ss_dssp             CEEEECCCCSSTTCCCCCCEEEESSSCTTCCCSEECCCBCSSCCS--TTCBCCCHHHHHHHHHTCCCBCSTTGGGTGGGC
T ss_pred             CcEEeeecCCCCCCCeEEEEEEecCCCCCCCceeeeeEEcCCCCC--CceEEEchHHHHHHHHCCCcCCHHHHHHHHHcC
Confidence            489999999999999999999999999999999999999999853  478999999999999999999999999999999


Q ss_pred             CCCC
Q 030410           82 LLPP   85 (178)
Q Consensus        82 llp~   85 (178)
                      ++++
T Consensus        79 ~~~~   82 (83)
T 3pys_P           79 VFRQ   82 (83)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            9875

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1

Probab=100.00  E-value=7.5e-43  Score=269.54  Aligned_cols=83  Identities=39%  Similarity=0.729  Sum_probs=73.0

Q ss_pred             CceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHc
Q 030410            1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA   80 (178)
Q Consensus         1 M~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~ka   80 (178)
                      |+|+|||+|+|+|++|||||||+|||++|||+|||+||||||+ +   ++.+.||+|||+|||++||||||||++||+++
T Consensus         1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGr~IE~lG~YnP~-~---~~~v~ld~eri~~WL~~GAQPTdtV~~LL~~a   76 (112)
T 3bn0_A            1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK-R---KVLINVYPEKVKEWVLKGVELSHRAKAILWNH   76 (112)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT-T---TEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT
T ss_pred             CcEEehhhcCCCCCCCeEEEEEEecCCCCCCCCEeEeeeccCC-C---cceEEEcHHHHHHHHHcCCccCHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999 3   37999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 030410           81 GLLPPPP   87 (178)
Q Consensus        81 Gllp~~p   87 (178)
                      |++++++
T Consensus        77 g~~~~~~   83 (112)
T 3bn0_A           77 GILKEVV   83 (112)
T ss_dssp             THHHHHC
T ss_pred             CCcccch
Confidence            9998874

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.1e-42  Score=256.35  Aligned_cols=82  Identities=37%  Similarity=0.659  Sum_probs=77.2

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      ||||||+|+|+|++|||||||+|||++|||+|||+||+|||+++     .+.||+||++|||++||||||||++||+++|
T Consensus         1 mvkIRL~R~G~KkrPfYrIVvadsr~~RDGr~IE~lG~YnP~~~-----~~~l~~eri~~Wl~~GAqpTdtV~~ll~~~g   75 (88)
T 3bbn_P            1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKS-----QTYLNVPAILDFLEKGAQPTETVYDILKRAE   75 (88)
T ss_dssp             CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTSS-----CBCCCTTTSSSSTTSSCEECTTTSSSSTTTT
T ss_pred             CeEEecccCCCCCCCeEEEEEEecCCCCCCCcEeEEEeccCCCC-----ceEEcHHHHHHHHHcCCccCHHHHHHHHHcC
Confidence            58999999999999999999999999999999999999999985     4899999999999999999999999999999


Q ss_pred             CCCCCCc
Q 030410           82 LLPPPPM   88 (178)
Q Consensus        82 llp~~p~   88 (178)
                      ++++++.
T Consensus        76 ~~~~~~~   82 (88)
T 3bbn_P           76 VFKEFRL   82 (88)
T ss_dssp             SSSCC--
T ss_pred             Ccccccc
Confidence            9998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d2uubp1	83	d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus t	1e-38
d3bn0a1	101	d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex	3e-37
d2gy9p1	78	d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherich	2e-34

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

 Score =  125 bits (315), Expect = 1e-38
 Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          V+IRLARFG K+ P YR++  D+R  RDGK++E +GYY+P         + ++ +R +YW
Sbjct: 2  VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTP--DWLKVDVERARYW 59

Query: 63 LSVGAQPSDPVQRILFRAGLLP 84
          LSVGAQP+D  +R+L +AG+  
Sbjct: 60 LSVGAQPTDTARRLLRQAGVFR 81

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

 Score =  122 bits (307), Expect = 3e-37
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          VRIRLA+FG K+ P YR++  D++SPR+GK++++LG Y+P         + +  ++VK W
Sbjct: 2  VRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDP----KRKVLINVYPEKVKEW 57

Query: 63 LSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPR 98
          +  G + S   + IL+  G+L          K    
Sbjct: 58 VLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGD 93

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (287), Expect = 2e-34
 Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 3  VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
          V IRLAR G K +PFY+V+ ADSR+ R+G+ +E +G++NP+   +  +   L+ DR+ +W
Sbjct: 2  VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIA-SEKEEGTRLDLDRIAHW 60

Query: 63 LSVGAQPSDPVQRIL 77
          +  GA  SD V  ++
Sbjct: 61 VGQGATISDRVAALI 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d2uubp1	83	Ribosomal protein S16 {Thermus thermophilus [TaxId	100.0
d2gy9p1	78	Ribosomal protein S16 {Escherichia coli [TaxId: 56	100.0
d3bn0a1	101	Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63	100.0

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.2e-42  Score=250.36  Aligned_cols=82  Identities=46%  Similarity=0.925  Sum_probs=77.9

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      ||+|||+|+|+||+|||||||+|+|++|||+|||+||+|||+.+.  ++.+.||.|||+|||++|||||+||++||+++|
T Consensus         1 MvkIRL~R~G~k~~P~yrIVv~d~r~~rdGk~IE~lG~YnP~~~~--~~~i~l~~eRi~~Wl~~GAqpS~tV~~ll~~~g   78 (83)
T d2uubp1           1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVGAQPTDTARRLLRQAG   78 (83)
T ss_dssp             CEEEEEEECSBTTBCCEEEEEEETTSCTTSCCSEEEEEECTTCCS--SCCEEECHHHHHHHHHHTCEECHHHHHHHHHTT
T ss_pred             CeEEecccCCCCCCCeEEEEEEecCCCCCCcceeeeeEECCCCCC--CceEEECHHHHHHHHHCCCCCCHHHHHHHHHcC
Confidence            589999999999999999999999999999999999999998643  478999999999999999999999999999999


Q ss_pred             CCCC
Q 030410           82 LLPP   85 (178)
Q Consensus        82 llp~   85 (178)
                      ++++
T Consensus        79 i~~~   82 (83)
T d2uubp1          79 VFRQ   82 (83)
T ss_dssp             SSCC
T ss_pred             CCcC
Confidence            9986

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-40  Score=238.87  Aligned_cols=77  Identities=40%  Similarity=0.808  Sum_probs=73.1

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHH
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFR   79 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~k   79 (178)
                      ||+|||+|+|+||+|||||||+|+|++|||++||+||+|||++++ +++.+.||+||++|||++|||||+||++||++
T Consensus         1 MvkIRL~r~G~k~~P~YrIVv~d~r~~rdgk~iE~lG~YnP~~~~-~~~~i~l~~eri~~Wl~~GAqps~~V~~LLkk   77 (78)
T d2gy9p1           1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQGATISDRVAALIKE   77 (78)
T ss_dssp             CEEEEEEECCBTTBCCEEEEEEETTSCTTSCCSEECCEECSSCCS-CSCCEECCHHHHHHHTTTTCEECHHHHHHHHH
T ss_pred             CeEEecccCCCCCCCeEEEEEeecCCCCCCcceeeeeeECCcCCC-CccceEecHHHHHHHHHCcCcCCHHHHHHHhh
Confidence            589999999999999999999999999999999999999999875 35679999999999999999999999999987

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1.3e-40  Score=250.19  Aligned_cols=82  Identities=38%  Similarity=0.721  Sum_probs=71.3

Q ss_pred             ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410            2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG   81 (178)
Q Consensus         2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG   81 (178)
                      +|+|||+|+||||+|||||||+|+|++|||+|||+||+|||..+    +.+.||.|||+|||++|||||+||++||+++|
T Consensus         1 AvkIRL~r~G~k~~p~yrIVv~d~r~~rdGk~iE~lG~ynP~~~----~~i~l~~eri~~Wl~~GAqpS~tV~~lL~~~g   76 (101)
T d3bn0a1           1 AVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRK----VLINVYPEKVKEWVLKGVELSHRAKAILWNHG   76 (101)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETTTT----EEEEECHHHHHHHHHTTCEEEHHHHHHHHHTT
T ss_pred             CeEEecccCCCCCCCeeEEEEeecCCCCCCcceeeeeEECCCCc----ccccccHHHHHHHHHcCCCcCHHHHHHHHHcC
Confidence            69999999999999999999999999999999999999999643    57999999999999999999999999999999


Q ss_pred             CCCCCC
Q 030410           82 LLPPPP   87 (178)
Q Consensus        82 llp~~p   87 (178)
                      ++++..
T Consensus        77 ~~~~~~   82 (101)
T d3bn0a1          77 ILKEVV   82 (101)
T ss_dssp             HHHHHC
T ss_pred             Cccccc
Confidence            998643