Citrus Sinensis ID: 030412

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MSASVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHcccEEEEccccEEEEEEEccccccccccccccEEEEEEEEEcccccEEEEEEcccccccccEEEccEEEccccccHHHHHHHHHHHHccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHccccccccccEEcccccccccEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHcccEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEcccEEEEEEEccccccccccEEccEEEccccccHHHHHHHHHHHHHcccHHHHEEEEEcc
Coil and Loop (DISEMBL)
msasvnssSATVNKFLNgindnyggvvvqmnepmdPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLvepavkegfwfhhaepnYLMLVYWipggantlpanashrvGVGAFVMNGKREVLVVQensgrfrgtgiwkfptgvvdegeDICVAAVREVKEETSIDTEFVEVLAFRQ
Flexible Loop (DISEMBL)
msasvnssSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVqensgrfrgtgiwkfptgvvdegEDICVAAVREvkeetsidtefvevlafrq
Low Complexity Region (SEG)
MsasvnsssatvnKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ
Disordered region (IsUnstruct)
***********VNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA***
Disordered Region (DISOPRED)
**************FLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ
Disordered Region (DISEMBL)
**********TVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ
Disordered Region (DISPRO)
***********VNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q94B74	278	Nudix hydrolase 2 OS=Arab	yes	no	1.0	0.636	0.651	5e-65
Q9SU14	282	Nudix hydrolase 7 OS=Arab	no	no	0.920	0.578	0.615	4e-54
Q6NPD7	277	Nudix hydrolase 10 OS=Ara	no	no	0.943	0.602	0.581	1e-53
Q8L7W2	369	Nudix hydrolase 8 OS=Arab	no	no	0.994	0.476	0.539	1e-49
Q9SJC4	283	Nudix hydrolase 6 OS=Arab	no	no	0.920	0.575	0.585	4e-49
Q9SJC6	302	Nudix hydrolase 5 OS=Arab	no	no	0.920	0.539	0.551	3e-48
P70563	313	Nucleoside diphosphate-li	yes	no	0.898	0.507	0.392	2e-28
Q8CH40	313	Nucleoside diphosphate-li	yes	no	0.898	0.507	0.392	4e-28
P53370	316	Nucleoside diphosphate-li	yes	no	0.898	0.503	0.392	7e-27
P13420	217	Nucleoside diphosphate-li	N/A	no	0.598	0.488	0.482	4e-20

>sp|Q94B74|NUDT2_ARATH Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1

 Score =  246 bits (628), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 139/181 (76%), Gaps = 4/181 (2%)

Query: 1   MSASVNS----SSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKK 56
           MSAS +S    S       L  + D YGGV+ +M  PMDP LF++LL+SS+S W  Q KK
Sbjct: 1   MSASSSSTNPMSREDATTLLPSVQDKYGGVMTEMTHPMDPSLFSTLLRSSLSTWTLQGKK 60

Query: 57  GVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVM 116
           GVWIKLP +L  L E AVKEGFWFHHAE +YLMLVYWIP   +TLPANASHRVG+GAFV+
Sbjct: 61  GVWIKLPKQLIGLAETAVKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVI 120

Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176
           N  +EVLVVQE +GRF+G GIWKFPTGVV+EGEDI   +VREVKEET +DTEF ++LAFR
Sbjct: 121 NHNKEVLVVQEKTGRFQGQGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFR 180

Query: 177 Q 177
           Q
Sbjct: 181 Q 181

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp|Q9SU14|NUDT7_ARATH Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1

 Score =  210 bits (535), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 121/164 (73%), Gaps = 1/164 (0%)

Query: 15  FLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAV 74
            L G  DNY GV V M EPMD ++F   L++S+SHWR++ KKG+WIKLP+ LANLVE AV
Sbjct: 10  LLEGETDNYDGVTVTMVEPMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLANLVEAAV 69

Query: 75  KEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENSGRFR 133
            EGF +HHAEP YLMLV WI    +T+PANASH VG GA V+N   +EVLVVQE SG F+
Sbjct: 70  SEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQERSGFFK 129

Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
              +WK PTGV++EGEDI     REV+EET I  +FVEVLAFRQ
Sbjct: 130 DKNVWKLPTGVINEGEDIWTGVAREVEEETGIIADFVEVLAFRQ 173

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use both NADH and ADP-ribose as substrates, but not 8-oxo-dGTP, cyclic ADP-ribose, GDP-manose, UDP-glucose, ATP, or GTP. Exerts negative control of EDS1 signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q6NPD7|NUD10_ARATH Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1

 Score =  209 bits (531), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/172 (58%), Positives = 122/172 (70%), Gaps = 5/172 (2%)

Query: 6   NSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIE 65
           N     + + L  ++D+YGGV+V+M  PMD + F + L+ S   WR Q KKGVW+ LP+ 
Sbjct: 10  NGVEHKIFEVLPFVDDDYGGVIVEMKTPMDTKNFVAALRDSFEQWRLQGKKGVWLNLPLS 69

Query: 66  LANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVV 125
             NLVEPAVKEGF +HHAEP YLMLVYWIP   +T+P NASHRV VGA V+N  +E    
Sbjct: 70  HVNLVEPAVKEGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKE---- 125

Query: 126 QENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
            E  G   G+GIWK PTGVVDEGE+I  AA+REVKEET IDTEF+E+LAF Q
Sbjct: 126 -EKYGSLCGSGIWKIPTGVVDEGEEIFAAAIREVKEETGIDTEFLEILAFCQ 176

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q8L7W2|NUDT8_ARATH Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 126/178 (70%), Gaps = 2/178 (1%)

Query: 2   SASVNSSSATVNKFLNGINDNYGGVVVQMNE-PMDPQLFASLLKSSISHWRQQAKKGVWI 60
           S ++ SS+      L+  +D YGGV+V   + P +P  FAS+L++S+S WR++ KKGVW+
Sbjct: 82  SRTLMSSAVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWL 141

Query: 61  KLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGG-ANTLPANASHRVGVGAFVMNGK 119
           KLP+E + LV  A+KEGF +HHAE  Y+ML YWIP    + LPANASH+VGVG FV+N  
Sbjct: 142 KLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQH 201

Query: 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           +EVLVVQE       TG+WK PTG ++E E+I   AVREVKEET +DTEF EV+AFR 
Sbjct: 202 KEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRH 259

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SJC4|NUDT6_ARATH Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1

 Score =  193 bits (491), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 117/164 (71%), Gaps = 1/164 (0%)

Query: 15  FLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAV 74
            L G+ DNYGGV V + EPM  + F   L++S+ +W  Q  KG+W+KL   L NL+ PA 
Sbjct: 10  LLQGVPDNYGGVKVNLTEPMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAK 69

Query: 75  KEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGK-REVLVVQENSGRFR 133
            EGF  HHAE  Y ML  WI    +TLPANASHR+GVGAFV+N K +EVLVVQE  G F+
Sbjct: 70  AEGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFK 129

Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           GTG+WK PTGVV EGE+I   A+REV+EET I T+FVEVLAFR+
Sbjct: 130 GTGVWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRE 173

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC6|NUDT5_ARATH Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=3

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/165 (55%), Positives = 116/165 (70%), Gaps = 2/165 (1%)

Query: 15  FLNGINDNYGGVVVQMNE--PMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEP 72
            L+G  D +GG VV + E   M    F S L  S+  W+ Q KKG+WIKLP EL++LV+ 
Sbjct: 29  LLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLVDT 88

Query: 73  AVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRF 132
           A+K+GF +HHAE  Y+ML +W+P   +TLP NASHR+G+GAFV+N   E+LVVQENSG F
Sbjct: 89  AIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYF 148

Query: 133 RGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           +   +WK PTG + EGE I   AVREVKEET ID EFVEVL+F +
Sbjct: 149 KDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFME 193

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P70563|NUDT6_RAT Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=1 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 9/168 (5%)

Query: 16  LNGINDNYGGVVVQMNE-----PMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
           L G  D +GG+ V ++       +D   F  LL+++I  WR + +   W+ +PI  ++ +
Sbjct: 43  LQGELDRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFI 102

Query: 71  EPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENS 129
            PA   GF FHHAEP+   L  W+  G + LP  A+H+VGV   V +   R+VLVVQ+  
Sbjct: 103 APAASLGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQD-- 160

Query: 130 GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
            R +   +WKFP G+ + GEDI   AVREV EET + +EF  +L+ RQ
Sbjct: 161 -RNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQ 207

May contribute to the regulation of cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|Q8CH40|NUDT6_MOUSE Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 9/168 (5%)

Query: 16  LNGINDNYGGVVVQMNEP-----MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
           L G  D +GGV V ++       +D   F  LL+++I  WR   +   W+ +PI  ++ +
Sbjct: 43  LQGELDRFGGVSVHLSRHHTLHGLDAAAFRRLLQAAIQQWRSDGRIAAWLHIPILQSHFI 102

Query: 71  EPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENS 129
            PA   GF FHHA+P+   L  W+  G + LP  A+H+VGV   V +   R+VLVVQ+  
Sbjct: 103 APAASLGFCFHHAKPHSSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQD-- 160

Query: 130 GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
            R +   +WKFP G+ + GEDI   AVREV EET + +EF  +L+ RQ
Sbjct: 161 -RNKLKNMWKFPGGLSEPGEDIADTAVREVFEETGVKSEFRSLLSIRQ 207

May contribute to the regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2

 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 95/168 (56%), Gaps = 9/168 (5%)

Query: 16  LNGINDNYGGVVVQMN-----EPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
           L G  D +GG+ V++      + +D   F   L++++  WR + +  VW+ +PI  +  +
Sbjct: 46  LQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFI 105

Query: 71  EPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGV-GAFVMNGKREVLVVQENS 129
            PA   GF FHHAE +   L  W+  G + LP  ASH+VGV GA      R++LVVQ+  
Sbjct: 106 APAASLGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQD-- 163

Query: 130 GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
            R +   +WKFP G+ +  EDI   AVREV EET I +EF  VL+ RQ
Sbjct: 164 -RNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQ 210

May contribute to the regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|P13420|NUDT6_XENLA Nucleoside diphosphate-linked moiety X motif 6 OS=Xenopus laevis GN=nudt6 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 69/114 (60%), Gaps = 8/114 (7%)

Query: 67  ANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVM---NGKREVL 123
           + L+  A  EGF FHHAE N   L  W+  G + LP  A+H+VGV   V+   NGK  VL
Sbjct: 3   SRLISIAASEGFTFHHAERNESTLTLWLKDGPSKLPGYATHQVGVAGAVLDEDNGK--VL 60

Query: 124 VVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           VVQ+   R +    WKFP G+ D+GEDI   AVREV EET I +EF  +L+ RQ
Sbjct: 61  VVQD---RNKTVNAWKFPGGLSDQGEDIGATAVREVLEETGIHSEFKSLLSIRQ 111

May contribute to the regulation of cell proliferation.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
224086336	241	predicted protein [Populus trichocarpa]	0.920	0.676	0.766	1e-72
147828008	346	hypothetical protein VITISV_029203 [Viti	0.988	0.505	0.737	1e-70
388505352	301	unknown [Lotus japonicus]	1.0	0.588	0.677	2e-70
356532784	338	PREDICTED: nudix hydrolase 2-like [Glyci	1.0	0.523	0.653	1e-69
359496122	274	PREDICTED: nudix hydrolase 2-like [Vitis	0.977	0.631	0.728	2e-69
297735882	253	unnamed protein product [Vitis vinifera]	0.983	0.687	0.729	2e-69
255579168	285	mutt domain protein, putative [Ricinus c	1.0	0.621	0.673	3e-69
224137208	277	predicted protein [Populus trichocarpa]	0.926	0.592	0.731	4e-69
356555765	338	PREDICTED: nudix hydrolase 2-like [Glyci	0.920	0.482	0.723	5e-69
255637466	338	unknown [Glycine max]	0.920	0.482	0.717	6e-69

>gi|224086336|ref|XP_002307853.1| predicted protein [Populus trichocarpa] gi|222853829|gb|EEE91376.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 147/163 (90%)

Query: 14  KFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPA 73
           + L+ +ND++GGV+V+++E MD ++FAS+LK+S++ WR Q K+GVWIK+PIEL NLVE A
Sbjct: 76  RLLDSVNDDHGGVIVELSESMDSKVFASMLKASLALWRSQGKRGVWIKVPIELVNLVEAA 135

Query: 74  VKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFR 133
           VKEGFWFHHAEP YLML +WIP GA+TLPANASHRVGVGAFVMN KREVLVVQE SG FR
Sbjct: 136 VKEGFWFHHAEPKYLMLAFWIPEGAHTLPANASHRVGVGAFVMNKKREVLVVQEKSGLFR 195

Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176
           GTG+WKFPTGVVDEGEDIC AA+REVKEET+IDTEFVEVLAFR
Sbjct: 196 GTGVWKFPTGVVDEGEDICAAAMREVKEETAIDTEFVEVLAFR 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828008|emb|CAN70796.1| hypothetical protein VITISV_029203 [Vitis vinifera]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 146/175 (83%)

Query: 3   ASVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKL 62
           AS N       K L+  ND++GGV+V+M E MD + F SLL++SI+HWRQQ K+GVWIK+
Sbjct: 74  ASGNEVQQVTMKVLSAENDDHGGVIVEMKEAMDFEAFVSLLRASIAHWRQQGKRGVWIKM 133

Query: 63  PIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREV 122
           PIEL NLVE AVKEGFW+HHAE  YLMLVYWIP G NT+P NA+HRVGVGAFV+N K EV
Sbjct: 134 PIELVNLVEAAVKEGFWYHHAERKYLMLVYWIPEGPNTIPPNATHRVGVGAFVLNEKGEV 193

Query: 123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           LVVQE SGRFRGTGIWKFPTGVVDEGEDIC AAVREVKEET ID++FVEVLAFRQ
Sbjct: 194 LVVQEKSGRFRGTGIWKFPTGVVDEGEDICDAAVREVKEETGIDSKFVEVLAFRQ 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505352|gb|AFK40742.1| unknown [Lotus japonicus]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 152/189 (80%), Gaps = 12/189 (6%)

Query: 1   MSASVNSSSATVN----------KFLNGINDNYGGVVVQMNE--PMDPQLFASLLKSSIS 48
           MS + +SS A V           + L   +D++GGV+V+M+E  PMD   F S+L++SIS
Sbjct: 10  MSDTTDSSLAAVQMTAEEQVQQIELLTSTDDDHGGVIVEMDEREPMDSTTFLSILRASIS 69

Query: 49  HWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHR 108
           HW+Q  +KGVWIKLPI LA+LVE  VKEGFW+HHAEP YLMLVYWIPGGANT+PANA+HR
Sbjct: 70  HWKQLGRKGVWIKLPIHLASLVEALVKEGFWYHHAEPKYLMLVYWIPGGANTIPANATHR 129

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           VGVGA V+N K+EVLVVQE SG F+GTG WKFPTGVVD+GEDICVAAVREVKEET +D+E
Sbjct: 130 VGVGALVVNEKQEVLVVQEKSGHFQGTGAWKFPTGVVDQGEDICVAAVREVKEETGVDSE 189

Query: 169 FVEVLAFRQ 177
           FVEVLAFRQ
Sbjct: 190 FVEVLAFRQ 198

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532784|ref|XP_003534950.1| PREDICTED: nudix hydrolase 2-like [Glycine max]

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 119/182 (65%), Positives = 151/182 (82%), Gaps = 5/182 (2%)

Query: 1   MSASVNSSSATVNK-----FLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAK 55
           +S+++ S +A  ++      L   +DNY GV+V++++PMD   F S+L++S+SHW++  K
Sbjct: 56  ISSAITSETAAEDQVQRVNLLRSTDDNYDGVIVELDQPMDSTTFISILRASVSHWKKLGK 115

Query: 56  KGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFV 115
           KGVWIKLPI L NLVE  VKEGFW+HHAEP YLMLVYWIP   +T+PANA+HRVG+G+FV
Sbjct: 116 KGVWIKLPIHLVNLVEALVKEGFWYHHAEPKYLMLVYWIPESPSTIPANATHRVGIGSFV 175

Query: 116 MNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
           MN K+EVLVVQENSG F+GTG+WKFPTGVVD+GEDICVAAVREVKEET +D+EFVEVL+F
Sbjct: 176 MNEKQEVLVVQENSGLFQGTGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFVEVLSF 235

Query: 176 RQ 177
           RQ
Sbjct: 236 RQ 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496122|ref|XP_002270110.2| PREDICTED: nudix hydrolase 2-like [Vitis vinifera]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 144/173 (83%)

Query: 3   ASVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKL 62
           AS N       K L+  ND++GGV+V+M E MD + F SLL++SI+HWRQQ K+GVWIK+
Sbjct: 17  ASGNEVQQVTMKVLSAENDDHGGVIVEMKEAMDFEAFVSLLRASIAHWRQQGKRGVWIKM 76

Query: 63  PIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREV 122
           PIEL NLVE AVKEGFW+HHAE  YLMLVYWIP G NT+P NA+HRVGVGAFV+N K E+
Sbjct: 77  PIELVNLVEAAVKEGFWYHHAERKYLMLVYWIPEGPNTIPPNATHRVGVGAFVLNEKGEM 136

Query: 123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
           LVVQE SGRFRGTGIWKFPTGVVDEGEDIC AAVREVKEET ID++FVEVLAF
Sbjct: 137 LVVQEKSGRFRGTGIWKFPTGVVDEGEDICDAAVREVKEETGIDSKFVEVLAF 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735882|emb|CBI18641.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 145/174 (83%)

Query: 3   ASVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKL 62
           AS N       K L+  ND++GGV+V+M E MD + F SLL++SI+HWRQQ K+GVWIK+
Sbjct: 74  ASGNEVQQVTMKVLSAENDDHGGVIVEMKEAMDFEAFVSLLRASIAHWRQQGKRGVWIKM 133

Query: 63  PIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREV 122
           PIEL NLVE AVKEGFW+HHAE  YLMLVYWIP G NT+P NA+HRVGVGAFV+N K E+
Sbjct: 134 PIELVNLVEAAVKEGFWYHHAERKYLMLVYWIPEGPNTIPPNATHRVGVGAFVLNEKGEM 193

Query: 123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176
           LVVQE SGRFRGTGIWKFPTGVVDEGEDIC AAVREVKEET ID++FVEVLAFR
Sbjct: 194 LVVQEKSGRFRGTGIWKFPTGVVDEGEDICDAAVREVKEETGIDSKFVEVLAFR 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579168|ref|XP_002530431.1| mutt domain protein, putative [Ricinus communis] gi|223530039|gb|EEF31962.1| mutt domain protein, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 151/187 (80%), Gaps = 10/187 (5%)

Query: 1   MSASVNSSSATVN----------KFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHW 50
           MSAS++S+ A V           K L  IND + GV+V+++EPM  ++F S+LK+S++HW
Sbjct: 1   MSASLSSTPAMVQGVAESEVKQMKLLAAINDGHEGVIVELSEPMSSEVFGSMLKASLAHW 60

Query: 51  RQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVG 110
           R+Q K+GVWIK+PIE  NLVE AVKEGFW+HHAEP YLMLVYWIP G +TLPANA+HRVG
Sbjct: 61  RKQGKRGVWIKVPIEFVNLVEAAVKEGFWYHHAEPKYLMLVYWIPEGTHTLPANATHRVG 120

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170
           VGAFVMN  REVLVVQE +G FRG G+WKFPTGVVDEGEDI  AAVREVKEET+I+T F+
Sbjct: 121 VGAFVMNENREVLVVQEKNGIFRGMGVWKFPTGVVDEGEDIWAAAVREVKEETAIETTFI 180

Query: 171 EVLAFRQ 177
           EVLAFRQ
Sbjct: 181 EVLAFRQ 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137208|ref|XP_002322500.1| predicted protein [Populus trichocarpa] gi|222867130|gb|EEF04261.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 143/164 (87%)

Query: 14  KFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPA 73
           K L+ +ND++GGV+V+++E MD ++FAS+LK+SI+ WR Q+K+GVWIK+PI+L NLVE A
Sbjct: 14  KLLDSVNDDFGGVIVELSEAMDLKVFASMLKASIALWRSQSKRGVWIKVPIQLVNLVEAA 73

Query: 74  VKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFR 133
           VKEGFWFHHAEP YLML +WIP G++TLPANASHRV +GAFVMN KREVLVVQE  G FR
Sbjct: 74  VKEGFWFHHAEPKYLMLAFWIPEGSHTLPANASHRVSIGAFVMNKKREVLVVQEKCGIFR 133

Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           GTGIWK PTG VDEGEDIC  A+REVKEET+IDTEFVEVLAF Q
Sbjct: 134 GTGIWKLPTGAVDEGEDICAGAIREVKEETAIDTEFVEVLAFWQ 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555765|ref|XP_003546200.1| PREDICTED: nudix hydrolase 2-like [Glycine max]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 140/163 (85%)

Query: 15  FLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAV 74
            L   +DNYGGV+V++++ MD   F S+L++S+SHW+   KKGVWIKLPI L NLVE  V
Sbjct: 75  LLTSTDDNYGGVIVELDQHMDSATFVSILRASVSHWKLLGKKGVWIKLPIHLVNLVEALV 134

Query: 75  KEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRG 134
           KEGFW+HHAEP YLMLVYWIP   +T+PANA+HRVGVG+FVMN K+EVLVVQENSG F+G
Sbjct: 135 KEGFWYHHAEPKYLMLVYWIPESPSTIPANATHRVGVGSFVMNEKQEVLVVQENSGLFQG 194

Query: 135 TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           TG+WKFPTGVVD+GEDICVAAVREVKEET +D+EFVEVLAFRQ
Sbjct: 195 TGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFVEVLAFRQ 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637466|gb|ACU19060.1| unknown [Glycine max]

 Score =  265 bits (677), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 140/163 (85%)

Query: 15  FLNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAV 74
            L   +DNYGGV+V++++ MD   F S+L++S+SHW+   KKGVWIKLPI L NLVE  V
Sbjct: 75  LLTSTDDNYGGVIVELDQHMDSATFVSILRASVSHWKLLGKKGVWIKLPIHLVNLVEALV 134

Query: 75  KEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRG 134
           KEGFW+HHAEP YLMLVYWIP   +T+PANA+HRVGVG+FVMN K+EVLVVQENSG F+G
Sbjct: 135 KEGFWYHHAEPKYLMLVYWIPESPSTIPANATHRVGVGSFVMNEKQEVLVVQENSGLFQG 194

Query: 135 TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           TG+WKFPTGV+D+GEDICVAAVREVKEET +D+EFVEVLAFRQ
Sbjct: 195 TGVWKFPTGVIDQGEDICVAAVREVKEETGVDSEFVEVLAFRQ 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2168993	278	NUDT2 "nudix hydrolase homolog	0.915	0.582	0.691	4.5e-59
TAIR|locus:2058334	283	NUDT6 "nudix hydrolase homolog	0.915	0.572	0.588	1.1e-46
TAIR|locus:2171544	369	NUDT8 "nudix hydrolase homolog	0.909	0.436	0.570	6.2e-46
TAIR|locus:2058364	302	NUDT5 "nudix hydrolase homolog	0.915	0.536	0.548	1.3e-45
TAIR|locus:2058349	215	AT2G04440 "AT2G04440" [Arabido	0.762	0.627	0.518	9.5e-34
DICTYBASE|DDB_G0281219	376	DDB_G0281219 "Nucleoside dipho	0.892	0.420	0.394	2.4e-28
UNIPROTKB|F1RQN4	314	NUDT6 "Uncharacterized protein	0.898	0.506	0.4	3.5e-27
RGD|621356	313	Nudt6 "nudix (nucleoside dipho	0.898	0.507	0.392	5.7e-27
MGI|MGI:2387618	313	Nudt6 "nudix (nucleoside dipho	0.898	0.507	0.392	9.4e-27
UNIPROTKB|F1NLN3	297	F1NLN3 "Uncharacterized protei	0.870	0.518	0.411	4e-26

TAIR|locus:2168993 NUDT2 "nudix hydrolase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 112/162 (69%), Positives = 132/162 (81%)

Query:    16 LNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVK 75
             L  + D YGGV+ +M  PMDP LF++LL+SS+S W  Q KKGVWIKLP +L  L E AVK
Sbjct:    20 LPSVQDKYGGVMTEMTHPMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETAVK 79

Query:    76 EGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGT 135
             EGFWFHHAE +YLMLVYWIP   +TLPANASHRVG+GAFV+N  +EVLVVQE +GRF+G 
Sbjct:    80 EGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQGQ 139

Query:   136 GIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
             GIWKFPTGVV+EGEDI   +VREVKEET +DTEF ++LAFRQ
Sbjct:   140 GIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQ 181

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2058334 NUDT6 "nudix hydrolase homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 96/163 (58%), Positives = 117/163 (71%)

Query:    16 LNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVK 75
             L G+ DNYGGV V + EPM  + F   L++S+ +W  Q  KG+W+KL   L NL+ PA  
Sbjct:    11 LQGVPDNYGGVKVNLTEPMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAKA 70

Query:    76 EGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGK-REVLVVQENSGRFRG 134
             EGF  HHAE  Y ML  WI    +TLPANASHR+GVGAFV+N K +EVLVVQE  G F+G
Sbjct:    71 EGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKG 130

Query:   135 TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
             TG+WK PTGVV EGE+I   A+REV+EET I T+FVEVLAFR+
Sbjct:   131 TGVWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRE 173

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0051707 "response to other organism" evidence=IEP

GO:0035529 "NADH pyrophosphatase activity" evidence=IDA

GO:0080151 "positive regulation of salicylic acid mediated signaling pathway" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2171544 NUDT8 "nudix hydrolase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 93/163 (57%), Positives = 120/163 (73%)

Query:    16 LNGINDNYGGVVVQMNE-PMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAV 74
             L+  +D YGGV+V   + P +P  FAS+L++S+S WR++ KKGVW+KLP+E + LV  A+
Sbjct:    96 LDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAI 155

Query:    75 KEGFWFHHAEPNYLMLVYWIPGGA-NTLPANASHRVGVGAFVMNGKREVLVVQENSGRFR 133
             KEGF +HHAE  Y+ML YWIP    + LPANASH+VGVG FV+N  +EVLVVQE      
Sbjct:   156 KEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPS 215

Query:   134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176
              TG+WK PTG ++E E+I   AVREVKEET +DTEF EV+AFR
Sbjct:   216 ITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFR 258

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2058364 NUDT5 "nudix hydrolase homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 90/164 (54%), Positives = 116/164 (70%)

Query:    16 LNGINDNYGGVVVQMNEPMDPQL--FASLLKSSISHWRQQAKKGVWIKLPIELANLVEPA 73
             L+G  D +GG VV + E     +  F S L  S+  W+ Q KKG+WIKLP EL++LV+ A
Sbjct:    30 LDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLVDTA 89

Query:    74 VKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFR 133
             +K+GF +HHAE  Y+ML +W+P   +TLP NASHR+G+GAFV+N   E+LVVQENSG F+
Sbjct:    90 IKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYFK 149

Query:   134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
                +WK PTG + EGE I   AVREVKEET ID EFVEVL+F +
Sbjct:   150 DKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFME 193

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2058349 AT2G04440 "AT2G04440" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 71/137 (51%), Positives = 92/137 (67%)

Query:    16 LNGINDNYGGVVVQMNE--PMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPA 73
             L G  D YG V V + E  PM+ + F + L  S   W+ Q KKG+WIKLP EL++LV+ A
Sbjct:    11 LIGKEDRYGRVEVNLMEVEPMNAEDFNAKLDVSFKAWKDQGKKGIWIKLPCELSSLVDIA 70

Query:    74 VKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFR 133
             +K+GF +HHAE  Y +L  WI    NT+PANASHR+G+GA V+N  REVL VQE  G F+
Sbjct:    71 MKKGFTYHHAENEYAVLSSWISDLPNTIPANASHRIGIGALVLNKNREVLAVQEIDGVFK 130

Query:   134 GTGIWKFPTGVVDEGED 150
              TG+WK PTGV+ E  +
Sbjct:   131 DTGLWKLPTGVIQENRE 147

GO:0003824 "catalytic activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

DICTYBASE|DDB_G0281219 DDB_G0281219 "Nucleoside diphosphate-linked moiety X motif 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 67/170 (39%), Positives = 95/170 (55%)

Query:    16 LNGINDNYGGVVVQ--MNEPMDP-----QLFASLLKSSISHWRQQAKKGVWIKLPIELAN 68
             L GI D + G++V+     P          F  ++K+S+  W +  ++G+WI++P   + 
Sbjct:   112 LAGIPDIFDGIIVKDTTQYPKGSGEDSVSKFKEIIKNSLQFWTENKRRGIWIEIPETNSI 171

Query:    69 LVEPAVKEGFWFHHAEPNYLMLVYWIP-GGANTLPANASHRVGVGAFVMNGKREVLVVQE 127
             L+   V+ GF FHH + NY+ML  W+P G  N LP   SH +G G  V+N + E+L++ E
Sbjct:   172 LIPTLVENGFSFHHCQSNYIMLTKWLPIGEPNKLPHYTSHFIGCGGVVINDRNEILLITE 231

Query:   128 NSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
                  +    WK P G  D GEDIC  AVREV EET I TEFV +L  RQ
Sbjct:   232 KQRPDK----WKIPGGANDPGEDICETAVREVWEETGIRTEFVSILGLRQ 277

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RQN4 NUDT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 66/165 (40%), Positives = 98/165 (59%)

Query:    16 LNGINDNYGGVVVQMN--EPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPA 73
             L G  D +GGV V+++  + +D   F   L+++I  WR + +  VW+ +PI  +  + PA
Sbjct:    47 LRGELDRFGGVSVKLDALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPA 106

Query:    74 VKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGV-GAFVMNGKREVLVVQENSGRF 132
                GF FHHAE +   L  W+  G + LP  A+H+VGV GA      +++LVVQ+   R 
Sbjct:   107 ASLGFCFHHAESDSSTLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQD---RN 163

Query:   133 RGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
             +   +WKFP G+ + GEDI   AVREV EET I +EF+ +L+ RQ
Sbjct:   164 KLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQ 208

GO:0016787 "hydrolase activity" evidence=IEA

RGD|621356 Nudt6 "nudix (nucleoside diphosphate linked moiety X)-type motif 6" [Rattus norvegicus (taxid:10116)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 66/168 (39%), Positives = 97/168 (57%)

Query:    16 LNGINDNYGGVVVQMNEP-----MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
             L G  D +GG+ V ++       +D   F  LL+++I  WR + +   W+ +PI  ++ +
Sbjct:    43 LQGELDRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFI 102

Query:    71 EPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENS 129
              PA   GF FHHAEP+   L  W+  G + LP  A+H+VGV   V +   R+VLVVQ+  
Sbjct:   103 APAASLGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQD-- 160

Query:   130 GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
              R +   +WKFP G+ + GEDI   AVREV EET + +EF  +L+ RQ
Sbjct:   161 -RNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQ 207

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:2387618 Nudt6 "nudix (nucleoside diphosphate linked moiety X)-type motif 6" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 66/168 (39%), Positives = 96/168 (57%)

Query:    16 LNGINDNYGGVVVQMNEP-----MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
             L G  D +GGV V ++       +D   F  LL+++I  WR   +   W+ +PI  ++ +
Sbjct:    43 LQGELDRFGGVSVHLSRHHTLHGLDAAAFRRLLQAAIQQWRSDGRIAAWLHIPILQSHFI 102

Query:    71 EPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENS 129
              PA   GF FHHA+P+   L  W+  G + LP  A+H+VGV   V +   R+VLVVQ+  
Sbjct:   103 APAASLGFCFHHAKPHSSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQD-- 160

Query:   130 GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
              R +   +WKFP G+ + GEDI   AVREV EET + +EF  +L+ RQ
Sbjct:   161 -RNKLKNMWKFPGGLSEPGEDIADTAVREVFEETGVKSEFRSLLSIRQ 207

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1NLN3 F1NLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 67/163 (41%), Positives = 94/163 (57%)

Query:    21 DNYGGVVVQMNEPMDPQ-----LFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVK 75
             D YGG  V++ E   P+      F   L++S++ W+Q+ +  VW+ +PI  + L   A  
Sbjct:    35 DKYGGGNVELAELRRPRRRERAAFGRWLRASVAQWQQEGRVAVWLHVPIFQSGLAAVAAS 94

Query:    76 EGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGV-GAFVMNGKREVLVVQENSGRFRG 134
             +GF FHHAE     L  W+  G + LPA ASH++GV GA +     +VLVVQ+ +    G
Sbjct:    95 QGFAFHHAESGSATLTRWLGEGPSRLPAFASHQLGVAGAVLDENSGKVLVVQDRNKTVNG 154

Query:   135 TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
                WKFP G+ + GEDI   AVREV EET I +EF  +L+ RQ
Sbjct:   155 ---WKFPGGLSNPGEDIGDTAVREVFEETGIKSEFKSILSIRQ 194

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94B74	NUDT2_ARATH	3, ., 6, ., 1, ., 2, 2	0.6519	1.0	0.6366	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.921
3rd Layer	3.6.1.13	0.914
3rd Layer	3.6.1.22	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0024004802 hypothetical protein (241 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	7e-34
pfam00293	133	pfam00293, NUDIX, NUDIX domain	1e-15
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	6e-14
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-12
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	2e-12
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	3e-11
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	1e-10
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	3e-10
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	6e-10
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	8e-10
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	1e-08
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	4e-08
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	5e-08
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-07
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	1e-07
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	2e-07
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	6e-07
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	7e-07
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	7e-07
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	1e-06
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	2e-06
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	3e-06
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	3e-06
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	5e-06
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	8e-06
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	1e-05
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	2e-05
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	3e-05
PLN02325	144	PLN02325, PLN02325, nudix hydrolase	6e-05
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	1e-04
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	1e-04
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	3e-04
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	4e-04
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	4e-04
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	5e-04
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	5e-04
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	6e-04
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	6e-04
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	0.002
PRK11762	185	PRK11762, nudE, adenosine nucleotide hydrolase Nud	0.003
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	0.003
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	0.003
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	0.003
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	0.003
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	0.004
cd04688	126	cd04688, Nudix_Hydrolase_29, Members of the Nudix	0.004

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  116 bits (292), Expect = 7e-34
 Identities = 43/71 (60%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           H VGVG  V+N K EVLVVQE   R +    WK P G+VD GEDI   AVREV EET ID
Sbjct: 1   HTVGVGGLVLNEKNEVLVVQE---RNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGID 57

Query: 167 TEFVEVLAFRQ 177
           TEFV V+ FR 
Sbjct: 58  TEFVSVVGFRH 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            R  VG  ++N   EVL+V+  S      G+W+ P G V+ GE    AAVRE++EET + 
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRR-SRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLR 59

Query: 167 TEFVEVLAF 175
              + +L  
Sbjct: 60  VLLLLLLGV 68

Length = 133

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 64.9 bits (159), Expect = 6e-14
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           +R  VG  + N   +V V +    R    G W+FP G +DEGED   AA+RE++EET +D
Sbjct: 2   YRPNVGVVLFNEDGKVFVGR----RIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLD 57

Query: 167 TEFVEVLA 174
            + VE++A
Sbjct: 58  PDSVEIIA 65

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           V VGA +++    VL+V+         G+W+ P G V+ GE +  AA+REV+EET +D
Sbjct: 1   VAVGAVILDEDGRVLLVRR---ADSPGGLWELPGGGVEPGETLEEAAIREVREETGLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           +R  VG  ++N + +V   +    R      W+FP G +D GE    A  RE+ EE  + 
Sbjct: 7   YRPNVGIILLNRQGQVFWGR----RIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLR 62

Query: 167 TEFVEVLA 174
            E VE+LA
Sbjct: 63  PEDVEILA 70

Length = 156

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
             GV A V + +  VL++     R    G+W  P G V+ GE     AVREV+EET +D 
Sbjct: 2   LPGVTAVVRDDEGRVLLI-----RRSDNGLWALPGGAVEPGESPADTAVREVREETGLDV 56

Query: 168 E 168
           E
Sbjct: 57  E 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGT---GIWKFPTGVVDEGEDICVAAVREVKEETS 164
           RVGVG FV+N K +VL+     G+ +G+   G W  P G ++ GE     A REV EET 
Sbjct: 2   RVGVGVFVLNPKGKVLL-----GKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETG 56

Query: 165 IDTEFVEVLAF 175
           +  E V+ L  
Sbjct: 57  LHIENVQFLTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170
           V A ++N + EVL++QE     RG   W  P G ++ GE I  A  REVKEET +D E  
Sbjct: 3   VAAVILNNQGEVLLIQEAKRSCRGK--WYLPAGRMEPGETIEEAVKREVKEETGLDCEPT 60

Query: 171 EVLA 174
            +L+
Sbjct: 61  TLLS 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 108 RVGVGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164
            +  G  V  G     EVL++            W  P G ++ GE    AAVREV+EET 
Sbjct: 1   VLAAGGVVFRGSDGGIEVLLI-----HRPRGDDWSLPKGKLEPGETPPEAAVREVEEETG 55

Query: 165 IDTEFVEVL 173
           I  E  + L
Sbjct: 56  IRAEVGDPL 64

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
            V VGA ++   R +LV + N     G G W  P G V+ GE +  AA RE+KEET +  
Sbjct: 10  LVAVGALIVRNGRILLVRRANEP---GAGYWALPGGFVEIGETLEEAARRELKEETGLRV 66

Query: 168 EFVEVLA 174
             +E+LA
Sbjct: 67  RVLELLA 73

Length = 145

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGT----GIWKFPTGVVDEGEDICVAAVREVKEETS 164
           V VGA V  G R VL+V+      R      G+W FP G V+ GE +  AA+RE+ EET 
Sbjct: 1   VAVGAVVFRGGR-VLLVR------RANPPDAGLWSFPGGKVELGETLEQAALRELLEETG 53

Query: 165 IDTEFVEVLA 174
           ++ E   +L 
Sbjct: 54  LEAEVGRLLT 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
           N + E L++Q + G       W FP G V+ GED   AA+RE +EET I  E + ++  
Sbjct: 14  NNEIEYLLLQASYGH------WDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLG 66

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           V V A +    + +L+V+E S      G+W  P G  D G       V+EVKEET +D +
Sbjct: 3   VDVRAAIFKDGK-ILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVK 56

Query: 169 FVEVLAFR 176
             ++ A  
Sbjct: 57  VRKLAAVD 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 110 GVGAFVMNGKREVLVVQENSGRFR-GTG--IWKFPTGVVDEGEDICVAAVREVKEET 163
            V     +   +V++V++    +R   G  + + P G++D GED   AA RE++EET
Sbjct: 4   AVAVLPYDDDGKVVLVRQ----YRPPVGGWLLELPAGLIDPGEDPEEAARRELEEET 56

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE 171
           GA ++N + +VL+VQE  G  +G  +W  P+G V++GE    AAVRE  EET +    V+
Sbjct: 17  GAVILNERNDVLLVQEKGGPKKG--LWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVK 74

Query: 172 VL 173
            L
Sbjct: 75  FL 76

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           +G  A V +    VL+V     R      W  P G ++ GE    AA RE+ EE  I   
Sbjct: 1   LGARAVVTDADGRVLLV-----RHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLA 55

Query: 169 FVEVL 173
            V  L
Sbjct: 56  VVAEL 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 112 GAFVMNGKRE-VLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           GA ++N   + VL+V+     ++    W FP G +++ ED    A+REV EET  D
Sbjct: 5   GAIILNEDLDKVLLVKG----WKSKS-WSFPKGKINKDEDDHDCAIREVYEETGFD 55

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           VG G  ++N + EVL+ Q+ S     TG W  P G ++ GE +   A RE+KEET ++ E
Sbjct: 8   VGAGVILLNEQGEVLL-QKRSD----TGDWGLPGGAMELGESLEETARRELKEETGLEVE 62

Query: 169 FVEVL 173
            +E+L
Sbjct: 63  ELELL 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           RVG GA ++    ++L+V+       G   W  P G VD  E +  A VRE++EET +  
Sbjct: 2   RVGCGAAILRDDGKLLLVKRLRAPEAGH--WGIPGGKVDWMEAVEDAVVREIEEETGLSI 59

Query: 168 EFVEVLA 174
               +L 
Sbjct: 60  HSTRLLC 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170
           V A +++    +L+ Q  +G+  G G+W+FP G V+ GE    A VRE++EE  I+ E  
Sbjct: 4   VAAIIIDDDGRILIAQRPAGKHLG-GLWEFPGGKVEPGETPEQALVRELREELGIEVEVG 62

Query: 171 EVLA 174
           E+LA
Sbjct: 63  ELLA 66

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           VG  ++N   E+LVV+    R  G G    P G VD GE    A +RE++EET +   
Sbjct: 4   VGVLILNEDGELLVVRR--AREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVT 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           A ++     VL+V     R RGT ++  P G ++ GE    A +RE+ EE  +D
Sbjct: 5   ALILVRDGRVLLV-----RKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLD 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDI-CVAAVREVKEETSI 165
                     +G  EVL+ Q    R    G+W+ P G V+ GE++   AA RE++EET +
Sbjct: 11  DVAVAVLVGRDGPGEVLLAQ----RRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66

Query: 166 D 166
            
Sbjct: 67  R 67

Length = 161

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
           V V A ++     +L+++ +       G W+ P G V+EGE    A  REV EET +
Sbjct: 2   VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
            G  A +    + +L++Q+N G + G   W  P G ++ GE    A  REV EET +  E
Sbjct: 1   FGAYAVIPRDGK-LLLIQKNGGPYEGR--WDLPGGGIEPGESPEEALHREVLEETGLTVE 57

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/26 (61%), Positives = 18/26 (69%)

Query: 138 WKFPTGVVDEGEDICVAAVREVKEET 163
           W+FP G V+ GE I  AA REV EET
Sbjct: 23  WEFPGGHVEPGETIEEAARREVWEET 48

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           V V A V    R +LV +E  G       +  P G ++ GE +  AAVRE  EET    E
Sbjct: 1   VTVAAVVERDGRFLLVEEETDGGLV----FNQPAGHLEPGESLIEAAVRETLEETGWHVE 56

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
           +VL++    G   G G W  P G V+ GE     A+RE+KEET +
Sbjct: 13  KVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGL 55

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEETS 164
           RV V  F++ G   +L      GR R   G   +  P G ++ GE     A REVKEET 
Sbjct: 9   RVAVVVFLLKGNSVLL------GRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETG 62

Query: 165 IDTEFVEVL 173
           ++ E +E+L
Sbjct: 63  LEIEKIELL 71

Length = 144

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 136 GIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
             W+  TG ++EGE     A+REVKEET ID 
Sbjct: 31  DFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62

Length = 148

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 134 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176
           G G    P G ++ GE    A  RE+ EET +  +  ++  F 
Sbjct: 27  GRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           +++Q  +      G W  P G +++GED   AAVRE +EE  + 
Sbjct: 13  VLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVT 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 111 VGAFVMN-GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 169
             AFV+N  + +VL+        R  G W  P G +D  E +  AA+RE++EET I+   
Sbjct: 5   ASAFVVNPDRGKVLLT-----HHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLG 59

Query: 170 VEVLAFRQ 177
           +  L+   
Sbjct: 60  LRPLSVLV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           V +G   VL+V+  +    G G+W  P G +++ E +  A +RE++EET + 
Sbjct: 211 VQSG--HVLLVRRRA--EPGKGLWALPGGFLEQDETLLDACLRELREETGLK 258

Length = 340

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 108 RVGVGAFVMNGKR-EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           R+ V A V+      +L+ +   G+ +G G+W+FP G V+ GE +  A  RE++EE  I+
Sbjct: 4   RIHVAAGVIRDADGRILLARRPEGKHQG-GLWEFPGGKVEPGETVEQALARELQEELGIE 62

Length = 312

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
           V A ++ G + +L+  +  G +      KFP G V++GED     +RE++EET
Sbjct: 3   VRAIILQGDKILLLYTKRYGDY------KFPGGGVEKGEDHIEGLIRELQEET 49

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 120 REVLVVQENSG------RFR-GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
           R  +V+  + G      R + G   + FP G ++EGE    AA RE  EE  +D    E+
Sbjct: 2   RASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI 61

Query: 173 LA 174
             
Sbjct: 62  FL 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173
            VL+++  S ++ G   W+  TG +++GE    AA REV EET +D E + +L
Sbjct: 16  RVLLLRR-SDKYAG--FWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLL 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           ++ VG  + N   E+ + +  +      G W+FP G ++ GE    A +RE++EE  I  
Sbjct: 5   QIAVG-IIRNPNNEIFITRRAADAHMA-GKWEFPGGKIEAGETPEQALIRELQEEVGITV 62

Query: 168 EFVEVL 173
           +   + 
Sbjct: 63  QHATLF 68

Length = 129

>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 140 FPTGVVDEGEDICVAAVREVKEE 162
           FP G++D GE    AA RE+KEE
Sbjct: 78  FPKGLIDPGETPLEAANRELKEE 100

Length = 185

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           V VGA +      +L+V+  + ++RG   W  P G V+ GE +  A  RE +EET + 
Sbjct: 3   VTVGALIYAPDGRILLVR--TTKWRGL--WGVPGGKVEWGETLEEALKREFREETGLK 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
             VL+V+++  R      W  P G ++ GE    AA RE++EET + 
Sbjct: 11  GRVLLVRKSGSR------WALPGGKIEPGETPLQAARRELQEETGLQ 51

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 140 FPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVL 173
           FP G VD G ED    A+RE +EE  +  + VEVL
Sbjct: 36  FPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVL 70

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 108 RVGVGAFVM-NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           R    A ++ N K  ++   ++ G +     +  P G  + GE +  AA RE KEE  ID
Sbjct: 1   RNSAKAVIIKNDKILLIKHHDDGGVW-----YILPGGGQEPGETLEDAAHRECKEEIGID 55

Query: 167 TEFVEVLAFRQ 177
            E   +L  R+
Sbjct: 56  VEIGPLLFVRE 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEE 162
              G+ EVL+V       R TG W  P G  ++ E    AA RE  EE
Sbjct: 10  ETGGEVEVLLVTS-----RRTGRWIVPKGGPEKDESPAEAAAREAWEE 52

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240044 cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 138 WKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175
           ++ P G ++ GE    A +RE KEE  +  E   +L  
Sbjct: 25  YRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGV 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	100.0
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.69
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.69
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.67
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.66
PLN02325	144	nudix hydrolase	99.65
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.64
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.64
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.62
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.62
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.61
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.61
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.61
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.61
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.61
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.61
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.6
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.6
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.6
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.6
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.59
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.58
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.58
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.57
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.57
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.56
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.56
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.56
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.56
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.55
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.55
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.55
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.54
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.54
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.54
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.54
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.54
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.53
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.53
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.53
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.52
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.52
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.52
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.52
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.51
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.51
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.51
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.5
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.49
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.49
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.48
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.47
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.47
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.47
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.46
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.46
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.46
PLN03143	291	nudix hydrolase; Provisional	99.45
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.43
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.42
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.42
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.41
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.41
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.4
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.38
PRK10707	190	putative NUDIX hydrolase; Provisional	99.38
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.38
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.37
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.37
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.36
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.35
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.33
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.33
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.33
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.33
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.28
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.21
PRK08999	312	hypothetical protein; Provisional	99.21
PLN02709	222	nudix hydrolase	99.17
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.15
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.15
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.06
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.98
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.87
PLN02552	247	isopentenyl-diphosphate delta-isomerase	98.85
PLN02791	770	Nudix hydrolase homolog	98.8
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.55
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.42
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.1
KOG4195	275	consensus Transient receptor potential-related cha	97.99
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.65
PLN02839	372	nudix hydrolase	97.64
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	97.48
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	96.08
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	96.04
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	95.2
PRK10880	350	adenine DNA glycosylase; Provisional	94.27
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	94.24
COG4112	203	Predicted phosphoesterase (MutT family) [General f	91.29
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	90.95
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	90.72
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	88.31
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	84.38

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-34  Score=237.63  Aligned_cols=165  Identities=62%  Similarity=1.003  Sum_probs=158.8

Q ss_pred             ccceeccccCCCCEEEec-CCCCChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEE
Q 030412           13 NKFLNGINDNYGGVVVQM-NEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLV   91 (177)
Q Consensus        13 ~~~~~~~~d~~~gv~v~~-~~~~~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~   91 (177)
                      ...+.+..|+||||.++. ..+.|...|.+.|++|+++|+.+|+.++|+++|...+++++.+++.||.|||+..+|.+++
T Consensus        19 ~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~   98 (295)
T KOG0648|consen   19 SSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLT   98 (295)
T ss_pred             hhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceeee
Confidence            467799999999999999 6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCCCCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412           92 YWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus        92 ~~l~~~~~~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      .|++..+.++|.++.|.++++++|+|.+++||+++.+.+.....|.|++|+|.|+++|++-++|+||++||||++.++.+
T Consensus        99 ~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~e  178 (295)
T KOG0648|consen   99 SWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVE  178 (295)
T ss_pred             eeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhh
Confidence            99999999999999999999999999989999999987777778999999999999999999999999999999999999


Q ss_pred             EEEEeC
Q 030412          172 VLAFRQ  177 (177)
Q Consensus       172 ~l~~r~  177 (177)
                      ++++||
T Consensus       179 Vla~r~  184 (295)
T KOG0648|consen  179 VLAFRR  184 (295)
T ss_pred             HHHHHh
Confidence            999886

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.69  E-value=1.3e-16  Score=120.59  Aligned_cols=67  Identities=22%  Similarity=0.334  Sum_probs=57.9

Q ss_pred             ceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce--eEEE
Q 030412          106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV--EVLA  174 (177)
Q Consensus       106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~--~~l~  174 (177)
                      ++.++|+++|++.++++||+||...+.  +|.|.||||++++||++++||+||++||||+++...  ++++
T Consensus        10 ~p~v~v~~vI~~~~g~vLl~~R~~~p~--~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~   78 (144)
T cd03430          10 TPLVSIDLIVENEDGQYLLGKRTNRPA--QGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLG   78 (144)
T ss_pred             CCeEEEEEEEEeCCCeEEEEEccCCCC--CCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEE
Confidence            346789999999989999999987553  689999999999999999999999999999988655  5544

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.9e-16  Score=115.99  Aligned_cols=66  Identities=33%  Similarity=0.526  Sum_probs=58.0

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +++|++++++.++++||++|.+.+  ..+.|.+|||++++||++.+||+||++||||+++....+++.
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~   67 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCV   67 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEE
Confidence            468899999998999999997654  358999999999999999999999999999999877776654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=2.5e-16  Score=115.70  Aligned_cols=67  Identities=63%  Similarity=0.925  Sum_probs=58.4

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR  176 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~r  176 (177)
                      |.++|++++++.++++||++++..   ..+.|.+|||++++||++.+||+||++||||++......+++.
T Consensus         1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~   67 (127)
T cd04670           1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFR   67 (127)
T ss_pred             CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEE
Confidence            467899999999899999988754   2589999999999999999999999999999998877766643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.66  E-value=3e-16  Score=119.04  Aligned_cols=70  Identities=34%  Similarity=0.543  Sum_probs=59.9

Q ss_pred             CcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Q 030412          104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR  176 (177)
Q Consensus       104 ~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~r  176 (177)
                      +..+.++|++++...+ ++||+||...|.  .|.|.||||+++.||++++||.||++||||+++...+++++-
T Consensus         6 ~~~p~~~v~~~i~~~~-~iLLvrR~~~p~--~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~   75 (145)
T COG1051           6 YRTPLVAVGALIVRNG-RILLVRRANEPG--AGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVF   75 (145)
T ss_pred             CCCcceeeeEEEEeCC-EEEEEEecCCCC--CCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Confidence            3455667877776654 999999998875  589999999999999999999999999999998888888763

>PLN02325 nudix hydrolase

Probab=99.65  E-value=9.2e-16  Score=116.02  Aligned_cols=70  Identities=34%  Similarity=0.534  Sum_probs=60.1

Q ss_pred             CCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          103 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       103 ~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .++++.+++++++++. +++||+||...+  +.|.|.+|||++++||++.+||+||++||||+++....++++
T Consensus         4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~   73 (144)
T PLN02325          4 GEPIPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTV   73 (144)
T ss_pred             CCCCCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEE
Confidence            3456778888888875 799999987654  358999999999999999999999999999999988887765

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.64  E-value=9.6e-16  Score=115.43  Aligned_cols=67  Identities=39%  Similarity=0.626  Sum_probs=57.1

Q ss_pred             ceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ....++++++++.++++||++++.++  ..+.|+||||++++||++++||+||++||||+++.....++
T Consensus        11 ~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~   77 (142)
T cd04700          11 VEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLG   77 (142)
T ss_pred             eeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEE
Confidence            44568888899988899999887654  36899999999999999999999999999999987666543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.64  E-value=1.1e-15  Score=117.71  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=53.0

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      +.++|+++|.+.+++|||+||...+  ..|.|+||||++++||++++||+||++||||+++.
T Consensus        16 ~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~   75 (159)
T PRK15434         16 PLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLP   75 (159)
T ss_pred             ceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence            3468888888888999999998654  36899999999999999999999999999999864

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.62  E-value=1.3e-15  Score=114.99  Aligned_cols=57  Identities=37%  Similarity=0.534  Sum_probs=51.3

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT  167 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~  167 (177)
                      +.++|++++++.++++||+||...    ++.|++|||++|+||++.+||+||++||||+++
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~~----~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~   62 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRADD----PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV   62 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecCC----CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence            457889899998899999988642    478999999999999999999999999999987

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=2.3e-15  Score=110.69  Aligned_cols=65  Identities=43%  Similarity=0.701  Sum_probs=57.2

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ++++++++++.++++||++|...+  ..+.|.+|||++++||++.+||.||++||||+++....+++
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~   66 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLT   66 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEE
Confidence            468899999998999999998654  36899999999999999999999999999999987766654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.61  E-value=1.9e-15  Score=114.14  Aligned_cols=63  Identities=43%  Similarity=0.704  Sum_probs=55.5

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +.++++++++.++++||++|...+    +.|.+|||.+++||++.+||+||++||||+++....+++
T Consensus         3 ~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~   65 (147)
T cd03671           3 RPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIA   65 (147)
T ss_pred             CceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEE
Confidence            468888999988999999998654    689999999999999999999999999999987666554

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=3.5e-15  Score=109.89  Aligned_cols=64  Identities=41%  Similarity=0.606  Sum_probs=55.3

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .+++++++.++++||++|.+.+.  ++.|.+|||++++||++.+||+||++||||+++....++++
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~   65 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRSC--RGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSV   65 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCCCC--CCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEE
Confidence            36677888889999999986553  58999999999999999999999999999999877776654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.61  E-value=1.8e-15  Score=110.31  Aligned_cols=62  Identities=34%  Similarity=0.496  Sum_probs=53.8

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ++.++++++ +++||+++...+  .++.|.+|||++++||++.+||+||++||||+++....+++
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~   63 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLG   63 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeee
Confidence            567777776 899999998765  36899999999999999999999999999999887666554

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=3.5e-15  Score=108.62  Aligned_cols=61  Identities=25%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      |+++++++ +++||+||...+...+|.|.||||++++||++.+||+||++||||+++.....
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~   63 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY   63 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceE
Confidence            44455554 89999998766543579999999999999999999999999999998644433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=2.5e-15  Score=110.17  Aligned_cols=63  Identities=30%  Similarity=0.480  Sum_probs=53.8

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .++|++++++.++++||+|+..    ..|.|.+|||++++||++.+||+||++||||+++....++.
T Consensus         2 ~~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~   64 (125)
T cd04696           2 LVTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAM   64 (125)
T ss_pred             ccEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEE
Confidence            3578888999889999998753    24899999999999999999999999999999887666544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=3.3e-15  Score=109.88  Aligned_cols=63  Identities=33%  Similarity=0.508  Sum_probs=54.6

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +|.+++++.++++||++|...+.  .+.|.+|||++++||++.+||.||++||||+++....+++
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~~--~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~   65 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREPG--KGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLF   65 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCCC--CCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEE
Confidence            57778888889999999976653  5899999999999999999999999999999887665543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=3.1e-15  Score=109.53  Aligned_cols=62  Identities=27%  Similarity=0.441  Sum_probs=52.7

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +++++++.++++||++|....   .+.|.||||++++||++.+||+||++||||+++....+++.
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~   64 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKPG---KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLI   64 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecCC---CCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEE
Confidence            566778877899999987543   47899999999999999999999999999999876665543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=5e-15  Score=109.54  Aligned_cols=73  Identities=23%  Similarity=0.342  Sum_probs=58.8

Q ss_pred             CCCCCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          100 TLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       100 ~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ....|.++.+.+++++++. +++||++|...+  ..|.|.+|||++++||++++||+||++||||+++....++++
T Consensus         5 ~~~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~   77 (130)
T cd04511           5 GYIHYQNPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAV   77 (130)
T ss_pred             ccccCCCCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEE
Confidence            3344556667777777765 799999997655  358999999999999999999999999999998866655553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.60  E-value=4.6e-15  Score=108.40  Aligned_cols=67  Identities=34%  Similarity=0.579  Sum_probs=58.4

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +.+|++++++.++++||++|.+.+....+.|.+|||.+++||++.+||+||+.||||++......++
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~   68 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLG   68 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccce
Confidence            4688999999988999999998764456999999999999999999999999999999985555444

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.60  E-value=3e-15  Score=112.10  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      .+.+.+++.++++||+||.......+|.|++|||++++||++.+||+||++||||+++.
T Consensus         5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   63 (141)
T PRK15472          5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL   63 (141)
T ss_pred             eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence            34445555578999999876543346999999999999999999999999999998764

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.59  E-value=5.1e-15  Score=109.93  Aligned_cols=65  Identities=29%  Similarity=0.415  Sum_probs=55.8

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ..+|++++++.++++||+++.+.+. .++.|.+|||++++||++.+||+||++||||+.+.....+
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~   66 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKL   66 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEE
Confidence            3578889999999999998876654 3579999999999999999999999999999998655444

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=6.5e-15  Score=108.34  Aligned_cols=63  Identities=38%  Similarity=0.641  Sum_probs=54.3

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +.+++++++++.++++||++|..     .+.|.||||++++||++.+||+||++||||+++....+++
T Consensus         6 ~~~~~~~~v~~~~~~vLL~~r~~-----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~   68 (132)
T cd04677           6 ILVGAGVILLNEQGEVLLQKRSD-----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLG   68 (132)
T ss_pred             cccceEEEEEeCCCCEEEEEecC-----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEE
Confidence            45678888888889999998874     2689999999999999999999999999999987766554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=5.4e-15  Score=108.03  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=48.2

Q ss_pred             EEEEEEcCCceEEEEEeecC-CCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          111 VGAFVMNGKREVLVVQENSG-RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~-~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      |+++++..++++||++|... ..+.+|.|.||||+++.||++++||+||++||||+++..
T Consensus         3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~   62 (122)
T cd04682           3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPE   62 (122)
T ss_pred             eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccc
Confidence            33344444599999999765 233469999999999999999999999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=7.3e-15  Score=106.41  Aligned_cols=63  Identities=41%  Similarity=0.703  Sum_probs=52.3

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +++++++++. +++||++|.+.+  ..+.|.+|||++++||++.+||.||++||||+++.....++
T Consensus         1 ~~v~~ii~~~-~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~   63 (122)
T cd04673           1 VAVGAVVFRG-GRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLT   63 (122)
T ss_pred             CcEEEEEEEC-CEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEE
Confidence            3567777765 789999987654  35899999999999999999999999999999976555544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=7.9e-15  Score=107.07  Aligned_cols=64  Identities=30%  Similarity=0.474  Sum_probs=54.9

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      ++++++|.+.++++||+||...+.+.+|.|++|||++++||++.+||+||++||||+++....+
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~   65 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR   65 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee
Confidence            3677777887789999999877654568999999999999999999999999999998765554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=1.3e-14  Score=105.29  Aligned_cols=57  Identities=32%  Similarity=0.584  Sum_probs=48.5

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      +|.+++++ ++++||+||...+. .++.|.+|||++++||++.+||+||++||||+.+.
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~   58 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD   58 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence            45655655 58999999876554 36899999999999999999999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=9.6e-15  Score=105.61  Aligned_cols=61  Identities=34%  Similarity=0.523  Sum_probs=52.5

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc-ceeEEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE-FVEVLAF  175 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~-~~~~l~~  175 (177)
                      ++.+++++.++++||++|+..     +.|.+|||++++||++++||+||++||||+.+. ...+++.
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~   63 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGV   63 (120)
T ss_pred             ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEE
Confidence            577788898899999998743     389999999999999999999999999999987 6665543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=1.1e-14  Score=107.29  Aligned_cols=64  Identities=30%  Similarity=0.377  Sum_probs=54.5

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ++.+++++.++++||++|...+.+.+|.|++ |||++++||++.+||+||++||||+++.....+
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~   66 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPL   66 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEe
Confidence            4667888999999999988766555799999 699999999999999999999999988654433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=1.3e-14  Score=108.51  Aligned_cols=58  Identities=34%  Similarity=0.519  Sum_probs=49.7

Q ss_pred             EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      .+++++++.+ +++||++|+.     .+.|.+|||++++||++.+||+||++||||+++.....
T Consensus         4 ~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~   62 (138)
T cd03674           4 TASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP   62 (138)
T ss_pred             EEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee
Confidence            5677888877 8999999864     37899999999999999999999999999998654433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=2e-14  Score=105.18  Aligned_cols=62  Identities=35%  Similarity=0.601  Sum_probs=53.4

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .++|.++++++ +++||+++++     .+.|.+|||++++||++.+||+||++||||+.+....++++
T Consensus         2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~   63 (123)
T cd04672           2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAV   63 (123)
T ss_pred             cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEE
Confidence            46788888876 7999998874     47899999999999999999999999999998866666654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=2.6e-14  Score=105.12  Aligned_cols=62  Identities=27%  Similarity=0.389  Sum_probs=50.9

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .++.+++++ ++++||++|....   .+.|.+|||++++||++++||+||++||||+.+...+++.
T Consensus         2 ~~a~~iv~~-~~~vLl~~r~~~~---~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~   63 (128)
T cd04687           2 NSAKAVIIK-NDKILLIKHHDDG---GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLF   63 (128)
T ss_pred             cEEEEEEEE-CCEEEEEEEEcCC---CCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEE
Confidence            356767776 5799999986532   4789999999999999999999999999999987655443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=2.3e-14  Score=103.54  Aligned_cols=59  Identities=29%  Similarity=0.505  Sum_probs=49.5

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc--eeEEE
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLA  174 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~l~  174 (177)
                      +++++++.++++||++++.     .+.|.||||++++||++++||+||++||||+....  ...++
T Consensus         3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~   63 (118)
T cd04690           3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLG   63 (118)
T ss_pred             EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEE
Confidence            4556777778999998863     47899999999999999999999999999998766  55443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.54  E-value=4.8e-14  Score=116.20  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEEEEEEcCCceE
Q 030412           43 LKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREV  122 (177)
Q Consensus        43 l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~~v~~~~~~v  122 (177)
                      ....+..|+...+     .||.+...+...           ..+....+     ..+....|+.+..+|.++|. .++++
T Consensus        88 ~a~~l~~w~~~~~-----fC~~CG~~~~~~-----------~~~~~~~C-----~~c~~~~yp~~~paViv~V~-~~~~i  145 (256)
T PRK00241         88 RAVQLAEFYRSHR-----FCGYCGHPMHPS-----------KTEWAMLC-----PHCRERYYPRIAPCIIVAVR-RGDEI  145 (256)
T ss_pred             HHHHHHHHhhcCc-----cccccCCCCeec-----------CCceeEEC-----CCCCCEECCCCCCEEEEEEE-eCCEE
Confidence            4555778888865     677666655431           12222211     33455555556666665554 45899


Q ss_pred             EEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       123 Ll~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ||+++++.+   .|.|.+|||++++||++++||+||++||||+++....+++
T Consensus       146 LL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~  194 (256)
T PRK00241        146 LLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVG  194 (256)
T ss_pred             EEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEE
Confidence            999987654   5899999999999999999999999999999988777664

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.54  E-value=2.4e-14  Score=106.13  Aligned_cols=61  Identities=31%  Similarity=0.542  Sum_probs=50.9

Q ss_pred             EEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       112 ~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .+++.+. +++||++|..++  ..+.|.+|||++++||++.+||+||++||||+++....+++.
T Consensus         5 ~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~   65 (137)
T cd03427           5 LCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGI   65 (137)
T ss_pred             EEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEE
Confidence            3344444 899999998765  368999999999999999999999999999998877666543

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=2.9e-14  Score=103.62  Aligned_cols=60  Identities=38%  Similarity=0.694  Sum_probs=52.3

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      .++.+++++.++++||++|..     .+.|.||||++++||++.+||+||++||||+++....++
T Consensus         3 ~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~   62 (129)
T cd04676           3 PGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLV   62 (129)
T ss_pred             ceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEE
Confidence            467778888889999999874     278999999999999999999999999999988766554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.54  E-value=1.1e-14  Score=106.51  Aligned_cols=61  Identities=39%  Similarity=0.631  Sum_probs=51.3

Q ss_pred             eEEEEEEEcCC---ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .++++++++.+   ++|||+++++.     +.|.||||++++||++.+||.||++||||+++.....++
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~   65 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLG   65 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEE
Confidence            35777777764   89999998742     689999999999999999999999999999887665443

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=2e-14  Score=105.62  Aligned_cols=59  Identities=34%  Similarity=0.544  Sum_probs=50.5

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      .|.+++++.+++|||+||.......+|.|++| ||++++||++ +||+||++||||+++..
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~   61 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDF   61 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcCh
Confidence            46677888889999999876554446899998 8999999999 99999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.53  E-value=4e-14  Score=108.42  Aligned_cols=64  Identities=34%  Similarity=0.485  Sum_probs=56.1

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ++.++++++++.++++||+||...    ++.|.+|||++++||++.+||.||++||||+++....+++
T Consensus         7 ~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~   70 (156)
T PRK00714          7 YRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILA   70 (156)
T ss_pred             CCCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEE
Confidence            456899999999999999998742    4789999999999999999999999999999887666555

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.53  E-value=1.9e-14  Score=106.83  Aligned_cols=62  Identities=27%  Similarity=0.454  Sum_probs=52.8

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +|.+.+.+.++++||++|+..+   .+.|.+|||++++||++++||.||++||||+++.....++
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~~---~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~   63 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRFP---PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVG   63 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCCC---CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEe
Confidence            4555667777899999987643   5899999999999999999999999999999987776654

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.53  E-value=3.6e-14  Score=108.62  Aligned_cols=66  Identities=33%  Similarity=0.427  Sum_probs=53.4

Q ss_pred             EEEEEEEcCC--ceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          110 GVGAFVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       110 ~v~~~v~~~~--~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +|.+++.+.+  +++||+||.......+|.|+||||++++| |++.+||+||++||||+++....+++.
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~   72 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGR   72 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEE
Confidence            4455555543  68999999876533468999999999999 999999999999999999877666553

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.52  E-value=3.7e-14  Score=104.88  Aligned_cols=61  Identities=34%  Similarity=0.467  Sum_probs=50.1

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +|++++. .++++||++|.+.   +.+.|.+|||++++||++.+||.||++||||+++....+++
T Consensus         2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~   62 (134)
T cd03675           2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLG   62 (134)
T ss_pred             eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEE
Confidence            4555544 4579999998765   35899999999999999999999999999999886655544

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.52  E-value=2.4e-14  Score=108.52  Aligned_cols=55  Identities=36%  Similarity=0.563  Sum_probs=47.6

Q ss_pred             EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      .+++++++.+ +++||+|+..     .+.|+||||++++||++.+||+||++||||+++..
T Consensus         3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~   58 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISK   58 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEecC-----CCCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence            5777888865 6999999863     24899999999999999999999999999998654

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=3.9e-14  Score=104.21  Aligned_cols=62  Identities=32%  Similarity=0.447  Sum_probs=52.4

Q ss_pred             EEEEEEEcC--CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~--~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .|.+++++.  ++++||+||...   .++.|.+|||++++||++.+||+||++||||+.+.....+.
T Consensus         3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~   66 (129)
T cd04664           3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLD   66 (129)
T ss_pred             EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEe
Confidence            466677776  899999999875   35899999999999999999999999999999875554443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.52  E-value=8e-14  Score=101.59  Aligned_cols=62  Identities=24%  Similarity=0.482  Sum_probs=51.7

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      .+++++.+.++++||+||+..+.+ .|.|+||||++++||++.+||.||+.||||+++.....
T Consensus         6 ~~~~ii~~~~~~vll~rR~~~~~~-~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~   67 (129)
T PRK10776          6 IAVGIIRNPNNEIFITRRAADAHM-AGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATL   67 (129)
T ss_pred             EEEEEEECCCCEEEEEEecCCCCC-CCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceE
Confidence            344556677889999999877654 49999999999999999999999999999998654443

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=5.6e-14  Score=102.85  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=49.9

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +.|.+++++ ++++||++++.     .+.|.+|||++++||++.+||+||++||||+++....+++
T Consensus         2 ~~~~~vi~~-~~~vLlv~~~~-----~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~   61 (125)
T cd04689           2 LRARAIVRA-GNKVLLARVIG-----QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLG   61 (125)
T ss_pred             eEEEEEEEe-CCEEEEEEecC-----CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEE
Confidence            356666664 67999998863     3689999999999999999999999999999887666654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.51  E-value=8.1e-14  Score=103.06  Aligned_cols=62  Identities=29%  Similarity=0.496  Sum_probs=50.7

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      +++++++.++++||+||+....+ .|.|.||||.+++||++.+||+||++||||+++....++
T Consensus         6 ~~~~ii~~~~~vLL~~R~~~~~~-~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~   67 (135)
T PRK10546          6 VVAAIIERDGKILLAQRPAHSDQ-AGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYV   67 (135)
T ss_pred             EEEEEEecCCEEEEEEccCCCCC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeE
Confidence            34445566789999999776554 599999999999999999999999999999987655433

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.51  E-value=9.6e-14  Score=109.03  Aligned_cols=64  Identities=27%  Similarity=0.334  Sum_probs=55.0

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +|+++.++.++++||+++.+.+. +...|+||||.+|+||++++||+||++||||+++..+..++
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~~~-~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~  112 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAAGT-ERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLK  112 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecCCC-CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEE
Confidence            46666677788999999877664 56889999999999999999999999999999998877665

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=1.2e-13  Score=104.58  Aligned_cols=61  Identities=28%  Similarity=0.464  Sum_probs=53.2

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      +++++++++.++++||++|...+...+|.|.+|||++++||++.+||+||++||||+.+..
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~   62 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDP   62 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccc
Confidence            4677788899999999999865533469999999999999999999999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.49  E-value=1e-13  Score=102.91  Aligned_cols=58  Identities=33%  Similarity=0.594  Sum_probs=47.5

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc-cceeEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVL  173 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~-~~~~~l  173 (177)
                      +|.++++++ ++|||+++++     .+.|.||||.+++||++.+||+||++||||+.+ .....+
T Consensus         2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l   60 (131)
T cd04686           2 AVRAIILQG-DKILLLYTKR-----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKF   60 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEcC-----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEE
Confidence            466677764 7999999874     257999999999999999999999999999986 334333

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.49  E-value=1.1e-13  Score=101.38  Aligned_cols=59  Identities=25%  Similarity=0.424  Sum_probs=48.7

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .|.++++++ +++||+++..     .+.|.+|||++++||++.+||+||++||||+++....+++
T Consensus         3 ~v~~vi~~~-~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~   61 (126)
T cd04688           3 RAAAIIIHN-GKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLG   61 (126)
T ss_pred             EEEEEEEEC-CEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeE
Confidence            455566654 4999998764     4789999999999999999999999999999887666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.48  E-value=1.1e-13  Score=104.06  Aligned_cols=59  Identities=20%  Similarity=0.416  Sum_probs=50.3

Q ss_pred             EEEEEEEcCC---ceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          110 GVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       110 ~v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      +|.+++++.+   +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+.
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~   66 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVS   66 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCC
Confidence            4667888876   899999987654445799999 5999999999999999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00586 mutt mutator mutT protein

Probab=99.47  E-value=3e-13  Score=98.77  Aligned_cols=62  Identities=27%  Similarity=0.432  Sum_probs=52.1

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      .+++++++.++++|+++|...+.+ .|.|+||||.+++||++.++++||+.||||+++.....
T Consensus         6 ~~~~ii~~~~~~vLl~~R~~~~~~-~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~   67 (128)
T TIGR00586         6 IAVGIIRNENGEIIITRRADGHMF-AKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF   67 (128)
T ss_pred             EEEEEEECCCCEEEEEEEeCCCCC-CCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE
Confidence            445556677789999999877765 49999999999999999999999999999998765443

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.47  E-value=1.5e-13  Score=107.60  Aligned_cols=62  Identities=26%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeE-EeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      .++.++++++++++||++|.....+.+|.| .+|||++++||++.+||+|||+||||+.+...
T Consensus        38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~  100 (180)
T PRK15393         38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF  100 (180)
T ss_pred             EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc
Confidence            356667889889999998876554445677 47999999999999999999999999986543

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.47  E-value=1e-13  Score=106.84  Aligned_cols=65  Identities=23%  Similarity=0.408  Sum_probs=55.3

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      ..+|++++++.++++||.+|.......+|.|.+| ||++++||++++||+||++||||+.+....+
T Consensus        30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~   95 (165)
T cd02885          30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLEL   95 (165)
T ss_pred             eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhh
Confidence            4467778889999999999987654457999996 8999999999999999999999998865544

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.46  E-value=1.8e-13  Score=98.46  Aligned_cols=54  Identities=30%  Similarity=0.453  Sum_probs=45.6

Q ss_pred             EEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       114 ~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ++...++++||++|..      +.|.+|||++++||++.+||.||++||||++......+
T Consensus         5 ~i~~~~~~vLlv~r~~------~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~   58 (112)
T cd04667           5 VICRRGGRVLLVRKSG------SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYL   58 (112)
T ss_pred             EEEecCCEEEEEEcCC------CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEE
Confidence            3444568999999862      78999999999999999999999999999987665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.46  E-value=2.1e-13  Score=100.37  Aligned_cols=59  Identities=32%  Similarity=0.437  Sum_probs=47.8

Q ss_pred             EEEEEEcC---CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce-eEEE
Q 030412          111 VGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV-EVLA  174 (177)
Q Consensus       111 v~~~v~~~---~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~l~  174 (177)
                      +++++++.   .+++||+++++     .+.|.+|||++++||++.+||+||++||||++.... .+++
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~   65 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRR-----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLG   65 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecC-----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEE
Confidence            45555553   36899998864     278999999999999999999999999999987655 5554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.46  E-value=1.9e-13  Score=116.90  Aligned_cols=61  Identities=31%  Similarity=0.553  Sum_probs=51.4

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      ..++++++++. +++|||++|...+  +.|.|.+|||++++||++++||+||++||||+++...
T Consensus       202 ~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~  262 (340)
T PRK05379        202 TFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEP  262 (340)
T ss_pred             cceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccc
Confidence            34677776665 5799999998765  3689999999999999999999999999999986543

>PLN03143 nudix hydrolase; Provisional

Probab=99.45  E-value=1.5e-12  Score=108.88  Aligned_cols=161  Identities=20%  Similarity=0.258  Sum_probs=95.4

Q ss_pred             ccccCccccccceeccccCCCCEEEecCCCCChHHHHHHHHHHH-HHHHHcCcceEEEecCcccccchhHHHhcceeeee
Q 030412            4 SVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSI-SHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHH   82 (177)
Q Consensus         4 ~~~~~~~~~~~~~~~~~d~~~gv~v~~~~~~~~~~f~~~l~~~~-~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~   82 (177)
                      +++++++.....|.-....-..|.|.....++.++|++.+...+ +.|-+.-....=+. ......+-.+.++ +..+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~-~vd~fg   99 (291)
T PLN03143         22 SSSSSSSPLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGIL-AYGSMSLKQVLIQ-GVDMFG   99 (291)
T ss_pred             ccCCCCCCceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccc-cCCCceeEEEEEE-EEeccc
Confidence            34455556667776665556778898877788889987776664 78866533211000 0011112222222 122223


Q ss_pred             cCCcEEEEEee---ecCCCCCCCCCcc-eeeEEEEEEE-cCCce--EEEEEeecCCCCCCCeEEeceEEeCC-CCCHHHH
Q 030412           83 AEPNYLMLVYW---IPGGANTLPANAS-HRVGVGAFVM-NGKRE--VLVVQENSGRFRGTGIWKFPTGVVDE-GEDICVA  154 (177)
Q Consensus        83 ~~~~~~~l~~~---l~~~~~~~p~~~~-~~~~v~~~v~-~~~~~--vLl~~r~~~~~~~~~~w~lPgG~ve~-gE~~~~a  154 (177)
                      ..-+|+.+..-   ++++. ..+.... +..+|+++++ +.+++  ++|+++.+.+. +...|+||||.+|+ +|++.+|
T Consensus       100 ~~~gflkv~~d~~~l~~G~-~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~edp~~a  177 (291)
T PLN03143        100 KRIGFLKFKADIIDKETGQ-KVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGDFVGT  177 (291)
T ss_pred             CceeEEEEEEEEEECCCCC-EeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCCHHHH
Confidence            34455544432   23332 3343322 2234554444 44444  88888887665 45799999999997 4899999


Q ss_pred             HHHHHHHHhCCccc
Q 030412          155 AVREVKEETSIDTE  168 (177)
Q Consensus       155 a~REl~EEtGl~~~  168 (177)
                      |+||++||||+...
T Consensus       178 A~REL~EETG~~~~  191 (291)
T PLN03143        178 AVREVEEETGIKLK  191 (291)
T ss_pred             HHHHHHHHHCCccc
Confidence            99999999999764

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.43  E-value=8.2e-13  Score=98.68  Aligned_cols=58  Identities=29%  Similarity=0.442  Sum_probs=50.6

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT  167 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~  167 (177)
                      ++.+++++.++++||+++........+.|.+|||++++||++.+||.||++||||+.+
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~   59 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV   59 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence            5778899999999999887643223589999999999999999999999999999987

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.42  E-value=1.8e-13  Score=100.51  Aligned_cols=57  Identities=40%  Similarity=0.627  Sum_probs=47.4

Q ss_pred             EEEEEEEcCCc---eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          110 GVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       110 ~v~~~v~~~~~---~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      ++++++++.++   ++||+|++.      +.|.+|||++++||++.+||+||++||||+++.....
T Consensus         4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~   63 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI   63 (130)
T ss_pred             EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh
Confidence            56666666433   799998873      6899999999999999999999999999998776554

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.42  E-value=7.3e-13  Score=95.30  Aligned_cols=62  Identities=37%  Similarity=0.670  Sum_probs=51.4

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      +.+++.+.++++||++|+..+. .+|.|.||||+++++|++.++|.||+.||||++......+
T Consensus         4 ~~~~i~~~~~~~Ll~~r~~~~~-~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~   65 (124)
T cd03425           4 VAAIIIDDDGRILIAQRPAGKH-LGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELL   65 (124)
T ss_pred             EEEEEECCCCEEEEEEeCCCCC-CCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceE
Confidence            4445567779999999987764 4699999999999999999999999999999987654433

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=5e-13  Score=98.93  Aligned_cols=50  Identities=34%  Similarity=0.470  Sum_probs=44.2

Q ss_pred             cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       117 ~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      +.++++||++|...   ..|.|.+|||++++||++.+||+||++||||+++..
T Consensus        11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   60 (131)
T cd04695          11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPE   60 (131)
T ss_pred             CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccc
Confidence            46789999999865   258999999999999999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.41  E-value=4.2e-13  Score=105.66  Aligned_cols=67  Identities=18%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             eeeEEEEEEEcC-CceEEEEEeecCCCC----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          107 HRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       107 ~~~~v~~~v~~~-~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      +..+|++++++. ++++||+++.+.+..    +...|+||||.+++||++++||+||++||||+++..+..+
T Consensus        43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~  114 (185)
T TIGR00052        43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKL  114 (185)
T ss_pred             cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEE
Confidence            344677777765 579999998776542    4578999999999999999999999999999998766544

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.40  E-value=6.9e-13  Score=104.09  Aligned_cols=62  Identities=18%  Similarity=0.385  Sum_probs=52.0

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      ..++++++++.+++|||+||..+...-+|.|.+| ||++++||++++||+||++||||+++..
T Consensus        34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~   96 (184)
T PRK03759         34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITD   96 (184)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence            3467778889899999999865443346889986 8999999999999999999999998753

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.38  E-value=1.5e-12  Score=108.45  Aligned_cols=110  Identities=18%  Similarity=0.187  Sum_probs=74.1

Q ss_pred             HHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEEEEEEcCCce-E
Q 030412           44 KSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKRE-V  122 (177)
Q Consensus        44 ~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~~v~~~~~~-v  122 (177)
                      ..++..|...=+     .||.+-+...|.....+-.+.   +.+..        .+ ...|++....|..++++.+++ .
T Consensus       140 ars~l~W~skyk-----FCp~CG~~tkp~e~g~k~~Cs---~~~C~--------~~-n~~yPr~dPvVIm~li~~d~~~~  202 (345)
T KOG3084|consen  140 ARSLLDWVSKYK-----FCPGCGSPTKPEEAGTKLQCS---DETCP--------SC-NVIYPRTDPVVIMLLIDHDGKHA  202 (345)
T ss_pred             HHHHHHHHHHhc-----cCcccCCCcccccCCccceee---cccCC--------cC-CeeccCCCCeEEEEEEcCCCCEe
Confidence            456678887633     788888888775554333322   11111        01 222334444566677776664 5


Q ss_pred             EEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       123 Ll~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ||.|.++.+   +|+|..++|++|+||++++||+||++||||++++.+.++
T Consensus       203 LL~R~~r~~---~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~  250 (345)
T KOG3084|consen  203 LLGRQKRYP---PGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV  250 (345)
T ss_pred             eeecccCCC---CchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeee
Confidence            555544443   589999999999999999999999999999999988754

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.38  E-value=1.8e-12  Score=102.56  Aligned_cols=65  Identities=26%  Similarity=0.363  Sum_probs=50.7

Q ss_pred             EEEEEEE--cCCceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVM--NGKREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~--~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +++++.+  +.++.+|++||........|.|+||||.+|++ |++++||+||++||||++...+..++
T Consensus        32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg   99 (190)
T PRK10707         32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIG   99 (190)
T ss_pred             eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEE
Confidence            4444444  34568999998765544568999999999985 68999999999999999987776554

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.38  E-value=2e-12  Score=92.18  Aligned_cols=58  Identities=38%  Similarity=0.732  Sum_probs=50.4

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      ++++++++.++++||++|...   ..|.|.+|||+++.||++.++|+||+.||+|+.....
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~   59 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL   59 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee
Confidence            567777888789999999865   2589999999999999999999999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.37  E-value=2.9e-12  Score=94.02  Aligned_cols=58  Identities=33%  Similarity=0.491  Sum_probs=47.4

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      |.+++++ ++++||++++      .+.|++|||++++||++++||+||++||||+.+.....++.
T Consensus         3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~   60 (118)
T cd04665           3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGY   60 (118)
T ss_pred             EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEE
Confidence            4444454 4789998876      25799999999999999999999999999999877666553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.37  E-value=4.1e-12  Score=93.30  Aligned_cols=55  Identities=29%  Similarity=0.425  Sum_probs=42.9

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      +++++...+ .+||++|...+  ..+.|.||||++++||++.+||.||+.||||+++.
T Consensus         7 av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674           7 VVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAVD   61 (118)
T ss_pred             EEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence            333443444 46666666544  36899999999999999999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.36  E-value=1e-12  Score=97.73  Aligned_cols=47  Identities=32%  Similarity=0.496  Sum_probs=41.3

Q ss_pred             CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       119 ~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      ++++||+|++.+.   .|.|.||||.+++||++.+||+||++||||+.+.
T Consensus        12 ~~~~Llvk~~~~~---~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~   58 (132)
T cd04661          12 DTLVLLVQQKVGS---QNHWILPQGKREEGETLRQTAERTLKELCGNNLK   58 (132)
T ss_pred             CcEEEEEEeecCC---CCeeECCcccccCCCCHHHHHHHHHHHhhCCCce
Confidence            4689999987532   4899999999999999999999999999999755

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.35  E-value=3.7e-12  Score=97.77  Aligned_cols=59  Identities=27%  Similarity=0.261  Sum_probs=47.8

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ..|++++... +++||+++..      ..|++|||++++||++.+||+||++||||+.+..+..++
T Consensus        25 ~~V~ii~~~~-~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg   83 (156)
T TIGR02705        25 NHVLVIPRYK-DQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIG   83 (156)
T ss_pred             CEEEEEEEEC-CEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEE
Confidence            4555555554 4888887762      359999999999999999999999999999988777665

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.33  E-value=3.4e-12  Score=97.88  Aligned_cols=60  Identities=23%  Similarity=0.385  Sum_probs=50.9

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      .+++++|++.++++||+||..+....+|.|++| ||+++.||  .+||+||++||||++....
T Consensus        28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~   88 (158)
T TIGR02150        28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDV   88 (158)
T ss_pred             EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCcccc
Confidence            456678889999999999877654457999997 79999999  4999999999999987654

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.33  E-value=7.1e-12  Score=103.51  Aligned_cols=116  Identities=19%  Similarity=0.209  Sum_probs=83.9

Q ss_pred             CChHHHHHH-HHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEE
Q 030412           34 MDPQLFASL-LKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVG  112 (177)
Q Consensus        34 ~~~~~f~~~-l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~  112 (177)
                      .+.+.|... -..++..|....+     .|+.+-...           .....++.+.+     ..+....|+....+|.
T Consensus        90 ~~~~~~~~~~~a~~l~~w~~~~R-----FCg~CG~~~-----------~~~~~g~~~~C-----~~cg~~~fPR~dP~vI  148 (279)
T COG2816          90 LDEGLFGLAARAVQLLEWYRSHR-----FCGRCGTKT-----------YPREGGWARVC-----PKCGHEHFPRIDPCVI  148 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhCc-----CCCCCCCcC-----------ccccCceeeeC-----CCCCCccCCCCCCeEE
Confidence            455555433 3445788888765     555444433           34445566654     3456666676677777


Q ss_pred             EEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       113 ~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +++.+.+. +||.++.++.   +|++.+-+|+||+|||+++|+.||++||+|+++..+++++
T Consensus       149 v~v~~~~~-ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~  206 (279)
T COG2816         149 VAVIRGDE-ILLARHPRHF---PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVG  206 (279)
T ss_pred             EEEecCCc-eeecCCCCCC---CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEe
Confidence            66666544 8888887765   5999999999999999999999999999999999988765

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.33  E-value=5.6e-12  Score=100.57  Aligned_cols=66  Identities=17%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             eeEEEEEEEcC-CceEEEEEeecCCCC----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          108 RVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       108 ~~~v~~~v~~~-~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ..+|+++.++. ++++||+++.+.+..    ++-.|++|+|.+|+||++++||+|||.||||+.+.....+
T Consensus        49 ~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l  119 (202)
T PRK10729         49 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPV  119 (202)
T ss_pred             CCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEE
Confidence            34676777775 479999888777652    1358999999999999999999999999999998766544

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.33  E-value=7.2e-12  Score=92.89  Aligned_cols=58  Identities=36%  Similarity=0.568  Sum_probs=44.4

Q ss_pred             EEEEEEc---CCceEEEEEeecCC--CCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          111 VGAFVMN---GKREVLVVQENSGR--FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       111 v~~~v~~---~~~~vLl~~r~~~~--~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      +++++++   ...+|||+++....  ....+.|++|||+++.||++.+||+||++||||+++.
T Consensus         3 ~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           3 AGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            4555554   23479999864320  0135899999999999999999999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.28  E-value=1.8e-11  Score=95.51  Aligned_cols=62  Identities=16%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             eeEEEEEEEcCC--ceEEEEEeecCCCCCCCeE-EeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          108 RVGVGAFVMNGK--REVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       108 ~~~v~~~v~~~~--~~vLl~~r~~~~~~~~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      .+.+.+++.|.+  +++++.||.......+|.| .+|+|++++||++.+||+||++||||++...
T Consensus        34 ~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~   98 (180)
T cd03676          34 GVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDL   98 (180)
T ss_pred             EEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHH
Confidence            334445666765  8999999988776678999 4999999999999999999999999998764

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.21  E-value=5.2e-11  Score=94.27  Aligned_cols=66  Identities=20%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             eeeEEEEEEEcC-CceEEEEEeecCCCC-----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          107 HRVGVGAFVMNG-KREVLVVQENSGRFR-----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       107 ~~~~v~~~v~~~-~~~vLl~~r~~~~~~-----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      +..+|++++++. +++++|+++.+.+.+     +.-.|++|+|.+|+| ++++||+||+.||||+.+..+..+
T Consensus        44 ~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l  115 (191)
T PRK15009         44 RGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKL  115 (191)
T ss_pred             ECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEe
Confidence            334677777775 679999998887752     457899999999976 699999999999999998766554

>PRK08999 hypothetical protein; Provisional

Probab=99.21  E-value=5.3e-11  Score=100.12  Aligned_cols=61  Identities=26%  Similarity=0.565  Sum_probs=50.8

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      .+++++++.++++||+||.....+ .|.|+||||.+++||++.+||.||++||||+.+....
T Consensus         7 ~~~~vi~~~~~~vLL~kR~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~   67 (312)
T PRK08999          7 VAAGVIRDADGRILLARRPEGKHQ-GGLWEFPGGKVEPGETVEQALARELQEELGIEVTAAR   67 (312)
T ss_pred             EEEEEEECCCCeEEEEEecCCCCC-CCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecce
Confidence            344456677789999999776654 5999999999999999999999999999999865443

>PLN02709 nudix hydrolase

Probab=99.17  E-value=9e-11  Score=94.68  Aligned_cols=55  Identities=27%  Similarity=0.410  Sum_probs=47.7

Q ss_pred             ceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          120 REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ..+||.+|.......+|.|.||||++|++ +++.+||+||+.||+|+.....++++
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg  106 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIIS  106 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEee
Confidence            48999999877544679999999999997 57999999999999999988777765

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.15  E-value=8e-11  Score=87.37  Aligned_cols=51  Identities=27%  Similarity=0.401  Sum_probs=40.2

Q ss_pred             EEEEEEcCCc--eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412          111 VGAFVMNGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT  167 (177)
Q Consensus       111 v~~~v~~~~~--~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~  167 (177)
                      |.+++.+.++  ++|+.+.+.      +.|+||||.+++||++.+||+||++||||+++
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHPL------AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcCC------CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            4445555443  666665542      45999999999999999999999999999986

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.15  E-value=1.4e-10  Score=84.27  Aligned_cols=45  Identities=40%  Similarity=0.736  Sum_probs=40.1

Q ss_pred             ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHH-HHHHHHHHHhCCccc
Q 030412          120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICV-AAVREVKEETSIDTE  168 (177)
Q Consensus       120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~-aa~REl~EEtGl~~~  168 (177)
                      +++|+.+++...    +.|.||||.+++||++.+ ||+||++||||++..
T Consensus        24 ~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          24 GEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             CEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence            788998888643    589999999999999888 999999999999887

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.06  E-value=2.1e-10  Score=90.46  Aligned_cols=42  Identities=31%  Similarity=0.571  Sum_probs=37.3

Q ss_pred             ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412          120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID  166 (177)
Q Consensus       120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~  166 (177)
                      -++|+++|+.     .|.|.||||++++||++.+||.||++||||+.
T Consensus        49 l~vLl~~r~~-----~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          49 LQFVAIKRPD-----SGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             eEEEEEEeCC-----CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            3788888863     47899999999999999999999999999764

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.98  E-value=1e-09  Score=82.22  Aligned_cols=61  Identities=26%  Similarity=0.408  Sum_probs=50.0

Q ss_pred             eeeEEEEEEEcCCc---eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412          107 HRVGVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       107 ~~~~v~~~v~~~~~---~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      .+..++++.+..++   +|||++-.+++    ..|-+|+|.+|++|+..+||+||..||.|+.-...+
T Consensus         8 ~r~vagCi~~r~~~~~ieVLlvsSs~~~----~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~   71 (145)
T KOG2839|consen    8 FRLVAGCICYRSDKEKIEVLLVSSSKKP----HRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR   71 (145)
T ss_pred             cEEEEEeeeeeecCcceEEEEEecCCCC----CCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence            44566667765433   89999987643    579999999999999999999999999999876665

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.87  E-value=5.4e-09  Score=82.13  Aligned_cols=47  Identities=34%  Similarity=0.520  Sum_probs=40.6

Q ss_pred             CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412          119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID  166 (177)
Q Consensus       119 ~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~  166 (177)
                      +-.++|++.-+.|. +.-..+||+|.+|.||+++.||+|||+||||+.
T Consensus        87 ~~~ivL~kQfRpP~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~  133 (225)
T KOG3041|consen   87 KPYIVLVKQFRPPT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYK  133 (225)
T ss_pred             cEEEEEEEeecCCC-CcEEEEcccccccCCCchHHHHHHHHHHHhCcc
Confidence            34678887777665 567889999999999999999999999999997

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=98.85  E-value=9.8e-09  Score=84.26  Aligned_cols=60  Identities=25%  Similarity=0.308  Sum_probs=48.1

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCC-----------------HHHHHHHHHHHHhCCccc
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGED-----------------ICVAAVREVKEETSIDTE  168 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~-----------------~~~aa~REl~EEtGl~~~  168 (177)
                      .++.++|+|.++++||+||.......+|.|+.. +|++..||+                 ..+||+||++|||||++.
T Consensus        57 ra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~  134 (247)
T PLN02552         57 RAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAE  134 (247)
T ss_pred             EEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcc
Confidence            457778999999999999988777678999776 455554422                 678999999999999854

>PLN02791 Nudix hydrolase homolog

Probab=98.80  E-value=1.3e-08  Score=94.78  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=52.9

Q ss_pred             eEEEEEEEcC-CceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          109 VGVGAFVMNG-KREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       109 ~~v~~~v~~~-~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      .++.+++++. ++++||+||.......+|.|++ |||+++.||+..+||+||+.||+||.+.
T Consensus        33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~   94 (770)
T PLN02791         33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILP   94 (770)
T ss_pred             EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCC
Confidence            4577788886 6899999998877777899999 7999999999999999999999999754

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.55  E-value=3.7e-07  Score=65.13  Aligned_cols=50  Identities=22%  Similarity=0.366  Sum_probs=43.0

Q ss_pred             EEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhC
Q 030412          114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS  164 (177)
Q Consensus       114 ~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtG  164 (177)
                      +++..++++||.||+..+.++ |+|+||+|.++.+|+.+++..|++.+|.+
T Consensus         8 ~ii~~~~~~ll~kR~~~gl~~-glwefP~~~~~~~~~~~~~~~~~~~~~~~   57 (118)
T cd03431           8 VVIRNDGRVLLEKRPEKGLLA-GLWEFPSVEWEEEADGEEALLSALKKALR   57 (118)
T ss_pred             EEEecCCeEEEEECCCCCCCC-cceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence            344556899999999888875 99999999999999999999999988875

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.42  E-value=4e-07  Score=73.45  Aligned_cols=55  Identities=31%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             ceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          120 REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      -.|||.+|.+......|.-.||||.+|+. ++-..+|.||.+||.|++.....+++
T Consensus        58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g  113 (246)
T KOG3069|consen   58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLG  113 (246)
T ss_pred             eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhh
Confidence            47999999887776789999999999985 57778999999999999876655443

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.10  E-value=6.6e-06  Score=60.75  Aligned_cols=58  Identities=34%  Similarity=0.598  Sum_probs=42.9

Q ss_pred             EEEEEEEcC-Cc--eEEEEEeecCCCC---CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          110 GVGAFVMNG-KR--EVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       110 ~v~~~v~~~-~~--~vLl~~r~~~~~~---~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      +++++++.. .+  .|||+. +.+|.|   +.|.|.+|.|....||++..||+||..||+||.+.
T Consensus         5 SAGvLlYR~~aG~v~VLLvH-PGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd   68 (161)
T COG4119           5 SAGVLLYRARAGVVDVLLVH-PGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD   68 (161)
T ss_pred             cceeEEEEecCCCEEEEEec-CCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence            455555542 22  455543 445555   35899999999999999999999999999999763

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.99  E-value=5.4e-06  Score=66.45  Aligned_cols=38  Identities=37%  Similarity=0.691  Sum_probs=34.2

Q ss_pred             eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHh
Q 030412          121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET  163 (177)
Q Consensus       121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEt  163 (177)
                      +++.+||+.     .+.|.+|||.+|+||.+-.+++||+.||.
T Consensus       140 e~vavkr~d-----~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  140 EFVAVKRPD-----NGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             EEEEEecCC-----CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            677888874     58999999999999999999999999985

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.65  E-value=4.8e-05  Score=54.67  Aligned_cols=54  Identities=19%  Similarity=0.365  Sum_probs=34.7

Q ss_pred             EEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       113 ~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      +++++.++++||.||+..+.++ |+|+||.-..+...+ .+.+.+.+.+..|+.+.
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~-GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~   55 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLA-GLWEFPLIESDEEDD-EEELEEWLEEQLGLSIR   55 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTT-T-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEE
T ss_pred             EEEEEeCCEEEEEECCCCChhh-cCcccCEeCccCCCC-HHHHHHHHHHHcCCChh
Confidence            4678899999999999999886 999999988874333 55555566677777543

>PLN02839 nudix hydrolase

Probab=97.64  E-value=0.0013  Score=56.83  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             CChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEEE
Q 030412           34 MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGA  113 (177)
Q Consensus        34 ~~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~  113 (177)
                      .++++-.+.|+.-+..|++.+.=.=|      ..++.++....|      .+-+..+    ......+-...+..+-+.+
T Consensus       147 ~t~~~Rt~al~~v~~~lr~~g~~~gW------RnE~y~V~~~~~------~~~l~~i----ERaA~~lfGi~tyGVHlNG  210 (372)
T PLN02839        147 QKPEDRTRAVADVIKILGDKGIIPGI------RNELYPVKPSFN------APVFFSL----ERAAAPYFGIKGYGVHMNG  210 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCCCc------ccCccccccCCC------CcceEEE----eeccccccCceeEEEEEEE
Confidence            35778888898889999998752223      222333221100      1122222    1122222222233344444


Q ss_pred             EEEc-CCceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          114 FVMN-GKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       114 ~v~~-~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      ++.. .+.++.+.||.......+|+|+- .+|.+..||++.++++||..||.|+...
T Consensus       211 yv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~  267 (372)
T PLN02839        211 YVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKA  267 (372)
T ss_pred             EEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHH
Confidence            4433 34579999998777777899976 6899999999999999999999999754

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=97.48  E-value=0.00013  Score=56.65  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=51.6

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      .+..++++|.+|++||.||......-++.|.-- .|+--+||+..+|++|-+.+|+||+....
T Consensus        34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~   96 (185)
T COG1443          34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQY   96 (185)
T ss_pred             hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCccc
Confidence            456779999999999999976655557888763 57777999999999999999999987643

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=96.08  E-value=0.034  Score=43.89  Aligned_cols=41  Identities=29%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412          120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID  166 (177)
Q Consensus       120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~  166 (177)
                      -+|||.|..      ...|.||||...+||+..++..|.+.+-.|..
T Consensus        58 PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   58 PHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             EEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             cEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            479999864      35899999999999999999999999998875

...

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=96.04  E-value=0.00071  Score=57.30  Aligned_cols=54  Identities=33%  Similarity=0.550  Sum_probs=44.1

Q ss_pred             EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      ..++.++|+. .++||++...     ...|.||-|++..+|+-.++|+||+.||||.+..
T Consensus        84 v~ga~ild~~~sr~llv~g~q-----a~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   84 VRGAIILDEKRSRCLLVKGWQ-----ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             CchHhhhhhhhhhhheeecee-----cccccccCccccccchhhhcchhcccchhhcCHH
Confidence            5667788864 4678877653     2459999999999999999999999999998753

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=95.20  E-value=0.047  Score=42.49  Aligned_cols=45  Identities=24%  Similarity=0.401  Sum_probs=37.2

Q ss_pred             EEEcCC--ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhC
Q 030412          114 FVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS  164 (177)
Q Consensus       114 ~v~~~~--~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtG  164 (177)
                      +++.+.  -+|||.|-.      ...+++|||..++||+-.+.+.|-+.|-.|
T Consensus        76 livheH~lPHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   76 LIVHEHNLPHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             EEEeecCCCeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            444443  578888754      468999999999999999999999999999

>PRK10880 adenine DNA glycosylase; Provisional

Probab=94.27  E-value=0.075  Score=45.96  Aligned_cols=48  Identities=21%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID  166 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~  166 (177)
                      ..++++..++++||.||+..+.|+ |+|+||..  +..+     ..++..|+.|+.
T Consensus       233 ~~~~~~~~~~~~~l~~r~~~gl~~-gl~~fP~~--~~~~-----~~~~~~~~~~~~  280 (350)
T PRK10880        233 GYFLLLQHGDEVWLEQRPPSGLWG-GLFCFPQF--ADEE-----ELRQWLAQRGIA  280 (350)
T ss_pred             EEEEEEEECCEEEEEECCccChhh-ccccCCCC--cchh-----hHHHHHHhcCCc
Confidence            333455566899999999888885 99999963  2211     235555777764

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=94.24  E-value=0.042  Score=46.34  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=31.7

Q ss_pred             eEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          137 IWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       137 ~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      ..++.+|.+|...++.+-|..|+.||+|++++..++
T Consensus        80 tielc~g~idke~s~~eia~eev~eecgy~v~~d~l  115 (405)
T KOG4432|consen   80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPDDL  115 (405)
T ss_pred             eeeeeccccccccCHHHHhHHHHHHHhCCcCChhHc
Confidence            458889999999999999999999999999876543

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=91.29  E-value=0.76  Score=35.65  Aligned_cols=61  Identities=23%  Similarity=0.383  Sum_probs=38.5

Q ss_pred             EEEcCCceEEEEEeecCCCCC--CCeEEe-ceEEeCCCC---CHHHH----HHHHHHHHhCCc---ccceeEEEE
Q 030412          114 FVMNGKREVLVVQENSGRFRG--TGIWKF-PTGVVDEGE---DICVA----AVREVKEETSID---TEFVEVLAF  175 (177)
Q Consensus       114 ~v~~~~~~vLl~~r~~~~~~~--~~~w~l-PgG~ve~gE---~~~~a----a~REl~EEtGl~---~~~~~~l~~  175 (177)
                      ++.+. .+||+-.|-.+....  -+.+.+ -||++..++   +.++.    +.|||.||.++.   ...+..+||
T Consensus        67 vi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGl  140 (203)
T COG4112          67 VIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGL  140 (203)
T ss_pred             EEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeee
Confidence            34454 499998886443210  145666 489998654   33332    679999999996   445555554

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=90.95  E-value=0.56  Score=39.24  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=24.2

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEece
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPT  142 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPg  142 (177)
                      ..+++.+.++++|+.||+....++ |+|+||+
T Consensus       230 ~~~~~~~~~~~~~~~~r~~~~~~~-gl~~~p~  260 (275)
T TIGR01084       230 YFLVLQNYDGEVLLEQRPEKGLWG-GLYCFPQ  260 (275)
T ss_pred             EEEEEEeCCCeEEEEeCCCCchhh-ccccCCC
Confidence            333444667899999998887775 9999997

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=90.72  E-value=0.41  Score=40.54  Aligned_cols=34  Identities=26%  Similarity=0.112  Sum_probs=28.5

Q ss_pred             eEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          137 IWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       137 ~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      ..+|.+|.|+..-+..+-|.||..||+|+++...
T Consensus       285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~  318 (405)
T KOG4432|consen  285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPED  318 (405)
T ss_pred             eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHH
Confidence            4567788998878899999999999999987543

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.31  E-value=0.27  Score=39.25  Aligned_cols=61  Identities=28%  Similarity=0.445  Sum_probs=42.9

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEe---------ceEEeC-CCCCHHHHHHHHHHHHhCCcccce
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF---------PTGVVD-EGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l---------PgG~ve-~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      +..++++|.++++||.||......-++.|.-         |+..-+ .+.....||+|-|.-|.||..+.+
T Consensus        54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v  124 (225)
T KOG0142|consen   54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEV  124 (225)
T ss_pred             eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCcccc
Confidence            5677899999999999998765544555532         121111 123567899999999999987654

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=84.38  E-value=1.8  Score=35.74  Aligned_cols=43  Identities=21%  Similarity=0.404  Sum_probs=36.2

Q ss_pred             ceEEEEEeecCCCCCCCeEEeceEEe-CCCCCHHHHHHHHHHHHhCC
Q 030412          120 REVLVVQENSGRFRGTGIWKFPTGVV-DEGEDICVAAVREVKEETSI  165 (177)
Q Consensus       120 ~~vLl~~r~~~~~~~~~~w~lPgG~v-e~gE~~~~aa~REl~EEtGl  165 (177)
                      .-+||++++.+.   .+.|.||-+.. ++++++...|.|+|.+-.|=
T Consensus       139 ~LyLLV~~k~g~---~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge  182 (263)
T KOG4548|consen  139 KLYLLVKRKFGK---SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGE  182 (263)
T ss_pred             eEEEEEeeccCc---cceeeCCCcccCCccchHHHHHHHHHHHHhcc
Confidence            457888876554   47999999999 99999999999999988874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3fxt_A	113	Crystal Structure Of The N-Terminal Domain Of Human		3e-10
3h95_A	199	Crystal Structure Of The Nudix Domain Of Nudt6 Leng		4e-10
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		8e-06
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		2e-05
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		3e-05
1f3y_A	165	Solution Structure Of The Nudix Enzyme Diadenosine		4e-05
3hhj_A	158	Crystal Structure Of Mutator Mutt From Bartonella H		2e-04
3gg6_A	156	Crystal Structure Of The Nudix Domain Of Human Nudt		3e-04

>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6 Length = 113

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 16  LNGINDNYGGVVVQMN-----EPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 70
           L G  D +GG+ V++      + +D   F   L++++  WR + +  VW+ +PI  +  +
Sbjct: 25  LQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFI 84
Query: 71  EPAVKEGFWFHHAEPNYLMLVYWIPGG 97
            PA   GF FHHAE +   L  W+  G
Sbjct: 85  APAASLGFCFHHAESDSSTLTLWLREG 111

>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6 Length = 199

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 96  GGANTLPANASHRVGV-GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 154
           G  N    + SH+VGV GA      R++LVVQ+   R +   +WKFP G+ +  EDI   
Sbjct: 14  GTENLYFQSMSHQVGVAGAVFDESTRKILVVQD---RNKLKNMWKFPGGLSEPEEDIGDT 70
Query: 155 AVREVKEETSIDTEFVEVLAFRQ 177
           AVREV EET I +EF  VL+ RQ
Sbjct: 71  AVREVFEETGIKSEFRSVLSIRQ 93

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           +G G  V N KREVL++++        G W FP G  + GE +  AAVREV EET +  E
Sbjct: 3   LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
Query: 169 FV 170
            +
Sbjct: 57  VL 58

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           +G G  V N KREVL++++        G W FP G  + GE +  AAVREV E+T +  E
Sbjct: 3   LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56
Query: 169 FV 170
            +
Sbjct: 57  VL 58

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 110 GVGAFVMNGKREVLVVQENS--GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
             G  ++N + ++L+VQE    G     G+W  P+G V++GE+   AAVRE  EET +  
Sbjct: 15  AAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRV 74
Query: 168 EFVEVL 173
             V+ L
Sbjct: 75  RPVKFL 80

>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine Tetraphosphate Hydrolase From Lupinus Angustifolius L. Length = 165

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 95  PGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 154
           P G+   P    +R  VG  +MN  +++      + R      W+ P G +DEGED   A
Sbjct: 2   PLGSMDSPPEG-YRRNVGICLMNNDKKIFA----ASRLDIPDAWQMPQGGIDEGEDPRNA 56
Query: 155 AVREVKEETSIDTEFVEVLA 174
           A+RE++EET + +   EV+A
Sbjct: 57  AIRELREETGVTS--AEVIA 74

>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae Length = 158

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 97  GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 156
           G  ++P  +S  + V   +++    VL+ Q   G+    G+W+FP G V++GE    + +
Sbjct: 18  GPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGK-SLAGLWEFPGGKVEQGETPEASLI 76
Query: 157 REVKEETSIDTE 168
           RE++EE  +  +
Sbjct: 77  RELEEELGVHVQ 88

>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18 Length = 156

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 95  PGGANTLPANASHRVG--VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDIC 152
           P G    P      V   V A  ++ + EVL++QE     RG+  W  P G ++ GE I 
Sbjct: 5   PAGEPPAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGS--WYLPAGRMEPGETIV 62
Query: 153 VAAVREVKEETSIDTEFVEVLAFRQ 177
            A  REVKEE  +  E   +L+  +
Sbjct: 63  EALQREVKEEAGLHCEPETLLSVEE 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	3e-36
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	1e-29
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-18
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	3e-17
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	2e-16
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-16
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	9e-15
3grn_A	153	MUTT related protein; structural genomics, hydrola	4e-14
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	4e-14
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	5e-14
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	6e-14
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	1e-13
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	2e-13
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	3e-13
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	2e-12
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	4e-12
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	5e-12
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	7e-12
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	1e-11
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	2e-11
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	2e-11
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	4e-11
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	6e-11
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	1e-10
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	2e-10
3f13_A	163	Putative nudix hydrolase family member; structural	5e-10
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	9e-10
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	9e-10
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-09
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-09
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	5e-09
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	5e-09
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	6e-09
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	1e-08
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	3e-08
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	3e-08
3exq_A	161	Nudix family hydrolase; protein structure initiati	3e-08
2b06_A	155	MUTT/nudix family protein; structural genomics, P	3e-08
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	5e-08
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	5e-08
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	8e-08
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	8e-08
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	8e-08
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	1e-07
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	1e-07
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	2e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	2e-07
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	1e-06
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	2e-06
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	2e-06
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	3e-06
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	5e-06
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	6e-06
2fb1_A	226	Conserved hypothetical protein; structural genomic	9e-06
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	9e-06
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	2e-05
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-05
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	5e-05
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	1e-04
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	2e-04
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	2e-04
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	7e-04

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens} Length = 113

 Score =  120 bits (303), Expect = 3e-36
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 7   SSSATVNKFLNGINDNYGGVVVQMN-----EPMDPQLFASLLKSSISHWRQQAKKGVWIK 61
            +    +  L G  D +GG+ V++      + +D   F   L++++  WR + +  VW+ 
Sbjct: 16  ENLYFQSMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLH 75

Query: 62  LPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGG 97
           +PI  +  + PA   GF FHHAE +   L  W+  G
Sbjct: 76  IPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREG 111

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score =  106 bits (267), Expect = 1e-29
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 80  FHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWK 139
            HH   +   +     G  N    + SH+VGV   V +     ++V +   R +   +WK
Sbjct: 1   MHHHHHHSSGVDL---GTENLYFQSMSHQVGVAGAVFDESTRKILVVQ--DRNKLKNMWK 55

Query: 140 FPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
           FP G+ +  EDI   AVREV EET I +EF  VL+ RQ
Sbjct: 56  FPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQ 93

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 77.1 bits (190), Expect = 1e-18
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 100 TLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREV 159
            L  N  +   V A  ++ + EVL++QE     RG+  W  P G ++ GE I  A  REV
Sbjct: 14  RLRKNVCY--VVLAVFLSEQDEVLLIQEAKRECRGS--WYLPAGRMEPGETIVEALQREV 69

Query: 160 KEETSIDTEFVEVLAFRQ 177
           KEE  +  E   +L+  +
Sbjct: 70  KEEAGLHCEPETLLSVEE 87

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 73.7 bits (181), Expect = 3e-17
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 107 HRVGVGAFVMNGKREVLVVQENS--GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164
                G  ++N + ++L+VQE    G     G+W  P+G V++GE+   AAVRE  EET 
Sbjct: 12  ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETG 71

Query: 165 IDTEFVEVLA 174
           +    V+ L 
Sbjct: 72  LRVRPVKFLG 81

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
            V V   V    +  LVV+E      G  +W  P G ++  E +  AA RE+ EET I  
Sbjct: 5   HVTVACVVHAEGK-FLVVEE---TINGKALWNQPAGHLEADETLVEAAARELWEETGISA 60

Query: 168 EFVEVLAFRQ 177
           +    +   Q
Sbjct: 61  QPQHFIRMHQ 70

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 70.4 bits (173), Expect = 2e-16
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           +G G  V N KREVL++++  G       W FP G  + GE +  AAVREV EET +  E
Sbjct: 3   LGAGGVVFNAKREVLLLRDRMGF------WVFPKGHPEPGESLEEAAVREVWEETGVRAE 56

Query: 169 FVEVLA 174
            +  L 
Sbjct: 57  VLLPLY 62

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 67.1 bits (164), Expect = 9e-15
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           R  +   V N   E L++Q       G   W  P G V+ GED    A+R  +EE  I+ 
Sbjct: 17  RRCLIPKVDNNAIEFLLLQ----ASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEA 72

Query: 168 EFVEVLA 174
             + ++ 
Sbjct: 73  GQLTIIE 79

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 65.1 bits (159), Expect = 4e-14
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           + + V A + N K E L+++ +       G W  P G V+  E +     REV EET I 
Sbjct: 7   YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGIT 66

Query: 167 TEFVEVLA 174
               ++  
Sbjct: 67  MVPGDIAG 74

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
            V V A +    +  L+V+E             P G ++ GE I  A  REV EET    
Sbjct: 8   NVTVAAVIEQDDK-YLLVEEIPRGTAIK--LNQPAGHLEPGESIIQACSREVLEETGHSF 64

Query: 168 EFVEVLAFRQ 177
               +     
Sbjct: 65  LPEVLTGIYH 74

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 64.8 bits (158), Expect = 5e-14
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            R      V   +   +V+ +        G +  P G ++  E    A  REV EE  I 
Sbjct: 17  TRYAAYIIVSKPENNTMVLVQ-----APNGAYFLPGGEIEGTETKEEAIHREVLEELGIS 71

Query: 167 TEFVEVL 173
            E    L
Sbjct: 72  VEIGCYL 78

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           RVG GA ++   R +L+++       G   W  P G VD  E +  A  RE++EE  I  
Sbjct: 29  RVGCGAAIVRDGR-ILLIKRKRAPEAGC--WGLPGGKVDWLEPVERAVCREIEEELGIAL 85

Query: 168 EFVEVLA 174
           E   +L 
Sbjct: 86  ERATLLC 92

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           R  VG  + N + +V+       R  G   W+FP G ++ GE    A  RE+ EE  +  
Sbjct: 8   RPNVGIVICNRQGQVMW-----ARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSR 62

Query: 168 EFVEVLA 174
           + V +LA
Sbjct: 63  KDVRILA 69

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 111 VGAFVMNGKRE-VLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
            GA +++   +  ++V+     ++ +  W FP G +D+ E     A+REV EET  D  
Sbjct: 104 RGAIMLDMSMQQCVLVK----GWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS 158

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           +V + A V   ++ + V +++ G+      W  P G  D G      A +EV EET  + 
Sbjct: 68  KVDIRAVVFQNEKLLFVKEKSDGK------WALPGGWADVGYTPTEVAAKEVFEETGYEV 121

Query: 168 EFVEVLA 174
           +  ++LA
Sbjct: 122 DHFKLLA 128

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           R  VG  +MN  +++        R      W+ P G +DEGED   AA+RE++EET + +
Sbjct: 14  RRNVGICLMNNDKKIFAAS----RLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTS 69

Query: 168 EFVEVLA 174
              EV+A
Sbjct: 70  --AEVIA 74

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 59.5 bits (144), Expect = 7e-12
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
             V +   V N + E L+ +  +   +G   W  P G V + E +  A  R    E  + 
Sbjct: 17  PLVSLDFIVENSRGEFLLGKRTNRPAQGY--WFVPGGRVQKDETLEAAFERLTMAELGLR 74

Query: 167 TEFVE 171
                
Sbjct: 75  LPITA 79

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174
            GK E L++Q           W  P G VD GED   AA+RE KEE +I  E + +  
Sbjct: 15  AGKIEFLLLQ----ASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHE 68

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 60.6 bits (146), Expect = 2e-11
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 91  VYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGED 150
           + W     + +  + +      A       EV +V            W +P G +++ E 
Sbjct: 9   IVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRP-----KYDDWSWPKGKLEQNET 63

Query: 151 ICVAAVREVKEETSIDTEFVEVLA 174
              AAVRE+ EET    +    L 
Sbjct: 64  HRHAAVREIGEETGSPVKLGPYLC 87

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 16/74 (21%), Positives = 29/74 (39%)

Query: 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKE 161
            +NA  +  +   ++      L+ +    R    G W    G V+ GE I  A  RE++E
Sbjct: 21  QSNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIRE 80

Query: 162 ETSIDTEFVEVLAF 175
           E        ++  +
Sbjct: 81  ELGEQLILSDITPW 94

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            +V V   ++  ++ +LV      +      W  P G V+ GE +  A +RE++EET ++
Sbjct: 22  MQVRVTGILIEDEKVLLV-----KQKVANRDWSLPGGRVENGETLEEAMIREMREETGLE 76

Query: 167 TEFVEVLAF 175
            +  ++L  
Sbjct: 77  VKIKKLLYV 85

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 56.4 bits (136), Expect = 6e-11
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 111 VGAFVMN-GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            GA + N    ++L+VQ           W FP G + + E+     +REVKEE   D
Sbjct: 7   RGAAIFNENLSKILLVQGTES-----DSWSFPRGKISKDENDIDCCIREVKEEIGFD 58

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           +     ++   + VL+V+      +  G++ +P G V+  E    A  RE +EET I  E
Sbjct: 2   IVTSGVLVENGK-VLLVKH-----KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55

Query: 169 FVEVLAF 175
            +     
Sbjct: 56  PIGFTYG 62

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           ++   A +    + +LV + +       G+W  P G  D  + +    V+EVKEE  +D 
Sbjct: 70  KLDTRAAIFQEDKILLVQEND-------GLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDV 122

Query: 168 EFVEVLA 174
           E   V+A
Sbjct: 123 EAQRVVA 129

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 54.5 bits (131), Expect = 5e-10
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 7/67 (10%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
                 A +      ++            G +  P G  + GE    A +RE++EET + 
Sbjct: 15  LARRATAIIEMPDGVLVTASRG-------GRYNLPGGKANRGELRSQALIREIREETGLR 67

Query: 167 TEFVEVL 173
              +  L
Sbjct: 68  INSMLYL 74

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 54.3 bits (130), Expect = 9e-10
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKE 161
                 R     F    + EVL+V       R    W  P G ++  E+  VAAVREV E
Sbjct: 36  GDGYKKRAACLCFRSESEEEVLLVS----SSRHPDRWIVPGGGMEPEEEPSVAAVREVCE 91

Query: 162 ETSIDTEFVEVL 173
           E  +      ++
Sbjct: 92  EAGVKGTLGRLV 103

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 53.5 bits (129), Expect = 9e-10
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 103 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEE 162
            N    V   A ++   + +LV ++        G +    G +   E    A VREVKEE
Sbjct: 14  DNTVFGVRATALIVQNHK-LLVTKDK-------GKYYTIGGAIQVNESTEDAVVREVKEE 65

Query: 163 TSIDTEFVEVLA 174
             +  +  ++  
Sbjct: 66  LGVKAQAGQLAF 77

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 99  NTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVRE 158
                     + V  +  + KR VL++Q    R      W+  TG V+EGE    AA+RE
Sbjct: 2   KDKVYKRPVSILVVIYAQDTKR-VLMLQ----RRDDPDFWQSVTGSVEEGETAPQAAMRE 56

Query: 159 VKEETSIDTEFVEVL 173
           VKEE +ID    ++ 
Sbjct: 57  VKEEVTIDVVAEQLT 71

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 107 HRVGVGAF-VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
            +V V  F       +  V+           +W+F  G  ++ E I   A RE  EE ++
Sbjct: 6   FQVLVIPFIKTEANYQFGVLHRTDA-----DVWQFVAGGGEDEEAISETAKRESIEELNL 60

Query: 166 DTEFVEVLA 174
           D +      
Sbjct: 61  DVDVKMYSL 69

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 79  WFHHAEPNYLMLVYWIPGGAN-TLPANASHRVGVGAFVMNGKR-EVLVVQENSGRFRGTG 136
           +    E +  + +  +    +     N    +   AF +N +R + L++           
Sbjct: 15  FNEQEERDKELFLRCLNDFHDILTRDNTIAHLTSSAFAVNKERNKFLMIHH-----NIYN 69

Query: 137 IWKFPTGVVDEGEDICVAAVREVKEETSID 166
            W +  G  D  +D    A++E+KEET + 
Sbjct: 70  SWAWTGGHSDNEKDQLKVAIKELKEETGVK 99

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 96  GGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAA 155
           G         + R+     V+  +R VL+  +  G   G   W    G V EGE I   A
Sbjct: 13  GLVPRGSHMGASRLYTLVLVLQPQR-VLLGMKKRGFGAGR--WNGFGGKVQEGETIEDGA 69

Query: 156 VREVKEETSIDTE 168
            RE++EE+ +  +
Sbjct: 70  RRELQEESGLTVD 82

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 52.1 bits (125), Expect = 6e-09
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 110 GVGAFVMNGKREVLVVQENSGRFRG-----TGIWKFPTGVVDEGEDICVAAVREVKEETS 164
            V          +L+++ +     G      G W  P G VDE E    AA RE++EETS
Sbjct: 36  TVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS 95

Query: 165 IDTEFVEVLA 174
           +    +    
Sbjct: 96  LTDIPLIPFG 105

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 3/120 (2%)

Query: 59  WIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAF-VMN 117
              +      L        F       + +    ++                V    ++ 
Sbjct: 157 KQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRLWLKAPFKPNFVTVDALVI 216

Query: 118 GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ 177
               +L+VQ  +   +    W  P G ++  E I  A +RE+ EET+I+    ++   ++
Sbjct: 217 VNDHILMVQRKAHPGKDL--WALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKR 274

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 95  PGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 154
             G  ++P  +S  + V   +++    VL+ Q   G+    G+W+FP G V++GE    +
Sbjct: 16  TQGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLA-GLWEFPGGKVEQGETPEAS 74

Query: 155 AVREVKEETSIDT 167
            +RE++EE  +  
Sbjct: 75  LIRELEEELGVHV 87

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
           + +    V  F++   + +L         +         G ++  E    A +RE KEE 
Sbjct: 2   SLNRHFTVSVFIVCKDKVLLH------LHKKAKKMLPLGGHIEVNELPEEACIREAKEEA 55

Query: 164 SIDTEFVEVLAFR 176
            ++      +   
Sbjct: 56  GLNVTLYNPIDIN 68

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
             +     V + + + ++V++            FP G V+ GE    AA+REV EET + 
Sbjct: 9   VELVTMVMVTDPETQRVLVEDKVNVP-WKAGHSFPGGHVEVGEPCATAAIREVFEETGLR 67

Query: 167 TEFVEVLAFR 176
              +  + F 
Sbjct: 68  ---LSGVTFC 74

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
            +     + + + + +V+Q  +        + FP G V+  E    + +RE+ EET +  
Sbjct: 8   ILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTI 67

Query: 168 E 168
           +
Sbjct: 68  Q 68

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170
               + N   E+ + +  +         +FP G ++ GE    A VRE++EE  I  +  
Sbjct: 7   AVGIIRNENNEIFITRRAADAHMA-NKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 171 EVLAF 175
            +   
Sbjct: 66  SLFEK 70

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 2/125 (1%)

Query: 51  RQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVG 110
           R    +G       ++   +   ++                +          A  +    
Sbjct: 145 RGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFI 204

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170
               V+     VL+V+  +    G      P G + + E +    +RE+KEET +     
Sbjct: 205 TTDAVVVQAGHVLMVRRQAKPGLGL--IALPGGFIKQNETLVEGMLRELKEETRLKVPLP 262

Query: 171 EVLAF 175
            +   
Sbjct: 263 VLRGS 267

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           V VG       + +L   + +      G W  P G ++  E +   A RE  EE +   E
Sbjct: 41  VIVGCIPEWENKVLLC--KRAIAPY-RGKWTLPAGFMENNETLVQGAARETLEEANARVE 97

Query: 169 FVEVLA 174
             E+ A
Sbjct: 98  IRELYA 103

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKE 161
                H + V A  +    ++LV Q         G W+FP G ++ GE    A  RE+ E
Sbjct: 15  KIRKGHWIPVVAGFLRKDGKILVGQRPENNSLA-GQWEFPGGKIENGETPEEALARELNE 73

Query: 162 ETSIDTEFVEVLAF 175
           E  I+ E  E+   
Sbjct: 74  ELGIEAEVGELKLA 87

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 109 VGVGAFVMNGKRE--VLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
             V   + +G+    +++++    R         P G V+ GE +  AA RE++EET ++
Sbjct: 12  TDVIIRLWDGENFKGIVLIE----RKYPPVGLALPGGFVEVGERVEEAAAREMREETGLE 67

Query: 167 TEFVEVLA 174
               +++ 
Sbjct: 68  VRLHKLMG 75

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
             A +++    VL+ Q   G+    G+W+FP G ++ GE    A VRE+ EE  +DT 
Sbjct: 11  TAAALIDPDGRVLLAQRPPGKSLA-GLWEFPGGKLEPGETPEAALVRELAEELGVDTR 67

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 109 VGVGAFVM-----NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163
           + V   ++       + +VL++Q     FR +  W  P G V+  E    + +RE KEET
Sbjct: 40  LTVDMVLLCYNKEADQLKVLLIQRKGHPFRNS--WALPGGFVNRNESTEDSVLRETKEET 97

Query: 164 SIDTEFVEVLAFR 176
            +      +    
Sbjct: 98  GVVISQENIEQLH 110

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
               V++  + VL++Q+        G W  P G ++ GE I     RE  EET I  +
Sbjct: 7   TNCIVVDHDQ-VLLLQKPR-----RGWWVAPGGKMEAGESILETVKREYWEETGITVK 58

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 102 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKE 161
           P  +   + V A ++    ++L+ Q  +   +  G+W+F  G V+  E    A VRE++E
Sbjct: 2   PLGSMKMIEVVAAIIERDGKILLAQRPAQSDQA-GLWEFAGGKVEPDESQRQALVRELRE 60

Query: 162 ETSIDTEFVEVLAF 175
           E  I+    E +A 
Sbjct: 61  ELGIEATVGEYVAS 74

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPT-GVVDEGEDICVAAVREVKEETSI 165
            RV V AF+ N + ++ + + +  +            G V  GE    A  RE +EE ++
Sbjct: 34  VRV-VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV 92

Query: 166 DTEFVEVLAF 175
           + + +     
Sbjct: 93  EIDALSWRPL 102

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 106 SHRVGVGAFVMNGKREVLVVQENSGRFR-GTG--IWKFPTGVVDEGEDICVAAVREVKEE 162
           ++R  V    +     +L+ +     +  GT      F  G++D GE +  AA RE+KEE
Sbjct: 47  TNREAVMIVPIVDDHLILIRE-----YAVGTESYELGFSKGLIDPGESVYEAANRELKEE 101

Query: 163 T 163
            
Sbjct: 102 V 102

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGT-GIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            V      +  K   L VQ    +F  T   ++FP G V+EGE +  A  RE+ EE    
Sbjct: 7   EVVAAVIRLGEK--YLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYV 64

Query: 167 TEFVEVLAF 175
            E  E L  
Sbjct: 65  IEVGEKLLT 73

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 109 VGVGAFVMNG--KREVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEET 163
           V V   +        +++V++    FR   G    +FP G++D+GE    AA+RE++EET
Sbjct: 64  VAVIPVLQRTLHYECIVLVKQ----FRPPMGGYCIEFPAGLIDDGETPEAAALRELEEET 119

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPT-GVVDEGEDICVAAVREVKEETSI 165
           HR      V +G  ++LV +    +    G+      GVV   E +  +A RE +EE  I
Sbjct: 37  HRA-TYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI 95

Query: 166 -DTEFVEVLAFR 176
               F E   F 
Sbjct: 96  AGVPFAEHGQFY 107

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEET 163
               V    +  + E +++++    FR      I +   G V++GED+  AA RE+ EE 
Sbjct: 4   GPRAVFILPVTAQGEAVLIRQ----FRYPLRATITEIVAGGVEKGEDLGAAAARELLEEV 59

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 99  NTLPANASHRVGVGAFVM---NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAA 155
           N   +N +  +G+   +     G+  +L+++ N     G   W    G V + E +  AA
Sbjct: 4   NYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGE--WSLMGGFVQKDESVDDAA 61

Query: 156 VREVKEETSIDTEFVEVL 173
            R + E T ++  ++E +
Sbjct: 62  KRVLAELTGLENVYMEQV 79

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEET 163
           H+  V    +   R + V Q      R   G    + P G+++ GED   AA RE+ E+T
Sbjct: 33  HKPAVAVIALREGRMLFVRQ-----MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQT 87

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 107 HRVGVGAFV---MNGKREVLVVQENSGRFR-GTG--IWKFPTGVVDEGEDICVAAVREVK 160
               V A     +  +   L+V++    +R  TG  + + P G VDEGE    AA RE++
Sbjct: 37  RPGPVAASFVLPVTERGTALLVRQ----YRHPTGKFLLEVPAGKVDEGETPEAAARRELR 92

Query: 161 EET 163
           EE 
Sbjct: 93  EEV 95

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 140 FPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174
           FP G +D GE    AA+RE +EE ++D   V +L 
Sbjct: 68  FPGGSLDAGETPTQAALREAQEEVALDPAAVTLLG 102

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPT-GVVDEGEDICVAAVREVKEETSI 165
           H     +++ N K ++LV +    +    G+W     G    GE    A +R  + E  +
Sbjct: 32  HLA-FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90

Query: 166 DTEFVEVLAFR 176
           +    E +   
Sbjct: 91  EITPPESIYPD 101

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            R   G  +M+      ++Q  + + +  G W  P G+VD GE I     RE  EE    
Sbjct: 121 KRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNS 180

Query: 167 TE 168
            +
Sbjct: 181 LQ 182

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSIDTEFVEVLA 174
           + + +VL+VQ ++  F G   W  P G +DE   E +    +R++ E+T++   ++E L 
Sbjct: 34  DQQLKVLLVQRSNHPFLGL--WGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC 91

Query: 175 FR 176
             
Sbjct: 92  TV 93

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFR---GTGIWKFPTGVVD-EGEDICVAAVREVKEE 162
           H   V    M+    + +V     ++R   G  +W+ P G++D  GE   + A RE++EE
Sbjct: 42  HFGAVAIVAMDDNGNIPMV----YQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREE 97

Query: 163 TSIDTEFVEVLA 174
             +     +VL 
Sbjct: 98  VGLQASTWQVLV 109

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 133 RGTGIWKFPTGVVDEGEDICVAAV-REVKEETSIDTEFVEVL 173
           R  G   FP G VD  +      + RE++EE       VEV 
Sbjct: 63  RFDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVT 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	99.93
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.67
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.65
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.65
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.64
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.64
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.64
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.63
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.63
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.62
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.61
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.61
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.61
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.61
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.61
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.61
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.6
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.6
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.59
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.59
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.59
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.59
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.58
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.58
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.58
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.58
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.58
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.57
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.57
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.57
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.57
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.56
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.56
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.56
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.56
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.56
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.56
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.56
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.56
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.56
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.55
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.55
3f13_A	163	Putative nudix hydrolase family member; structural	99.55
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.54
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.54
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.54
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.53
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.53
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.53
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.53
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.53
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.52
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.51
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.51
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.51
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.5
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.5
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.49
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.48
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.47
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.46
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.45
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.45
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.44
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.43
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.38
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.31
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.29
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.23
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.23
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.19
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.16
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.14
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.08
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.05
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.97
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.82
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.61

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.3e-26  Score=165.37  Aligned_cols=86  Identities=31%  Similarity=0.717  Sum_probs=80.5

Q ss_pred             ccceeccccCCCCEEEec-----CCCCChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcE
Q 030412           13 NKFLNGINDNYGGVVVQM-----NEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNY   87 (177)
Q Consensus        13 ~~~~~~~~d~~~gv~v~~-----~~~~~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~   87 (177)
                      ..+|+|..|+||||+|+.     ..+.++++|.+.|+.||+.|+++++++|||++|+.+++++|++++.||.||||+++|
T Consensus        22 ~~~l~g~~DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi~~s~lIp~a~~~GF~fHHAe~dy  101 (113)
T 3fxt_A           22 SMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDS  101 (113)
T ss_dssp             CCCCCCEECTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGGGHHHHHHTTCEEEEEEBTE
T ss_pred             cccccCCccCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEcCHHHhhhHHHHHHcCceeecCCCCe
Confidence            578999999999999997     346899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeecCCC
Q 030412           88 LMLVYWIPGGA   98 (177)
Q Consensus        88 ~~l~~~l~~~~   98 (177)
                      +||++|||+++
T Consensus       102 lmL~~WLpe~p  112 (113)
T 3fxt_A          102 STLTLWLREGP  112 (113)
T ss_dssp             EEEEEECCC--
T ss_pred             EEEEEecCcCC
Confidence            99999999876

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.67  E-value=2.9e-16  Score=117.96  Aligned_cols=76  Identities=29%  Similarity=0.498  Sum_probs=59.6

Q ss_pred             CCCCCCCCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412           97 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus        97 ~~~~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ++..++....+.++|++++++ +++|||++|.+.+  ..+.|.||||.+++||++.+||+||++||||+++....+++.
T Consensus        18 ~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   93 (157)
T 4dyw_A           18 GPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRAP--EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV   93 (157)
T ss_dssp             --------CCCEEEEEEEEEE-TTEEEEEEECSSS--STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEE
T ss_pred             CCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCCC--CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence            455566666777888888888 6899999998765  368999999999999999999999999999999877776654

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.65  E-value=7.7e-16  Score=114.66  Aligned_cols=69  Identities=28%  Similarity=0.375  Sum_probs=58.9

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ..++|++++++.++++||++|........|.|.||||.+++||++.+||+||++||||+.+....+++.
T Consensus         7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   75 (153)
T 3grn_A            7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQ   75 (153)
T ss_dssp             EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEE
T ss_pred             eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEE
Confidence            456788888888899999999875223469999999999999999999999999999999887766654

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.65  E-value=2.9e-16  Score=115.66  Aligned_cols=60  Identities=32%  Similarity=0.632  Sum_probs=51.4

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .++++++|++ +++|||++|+      .|.|.||||++++||++.+||+||++||||+++....+++
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~   63 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIG   63 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECT------TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeC------CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeee
Confidence            4577777776 4899999875      3689999999999999999999999999999987766655

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.64  E-value=6.6e-16  Score=116.36  Aligned_cols=68  Identities=21%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ....+++++++.++++||++|.......+|.|.||||++++||++.+||+||++||||+++....++.
T Consensus        26 ~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~   93 (165)
T 3oga_A           26 RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITP   93 (165)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             ceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceee
Confidence            34455556667779999999875432235899999999999999999999999999999987666554

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.64  E-value=3.8e-16  Score=115.87  Aligned_cols=65  Identities=23%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ..+|++++++.++++||+++++.+. +.+.|+||||++++||++++||+||++||||+++.....+
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~r~~~-~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l   69 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQFRYPL-RATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPL   69 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEEETTT-TEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEEC
T ss_pred             CCEEEEEEEcCCCEEEEEEEEecCC-CCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEE
Confidence            4578888888889998887655443 3469999999999999999999999999999987655443

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.64  E-value=1e-15  Score=122.36  Aligned_cols=74  Identities=22%  Similarity=0.403  Sum_probs=62.9

Q ss_pred             CCCCCcceeeEEEEEEE---cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          100 TLPANASHRVGVGAFVM---NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       100 ~~p~~~~~~~~v~~~v~---~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ..+.+..+.++|+++|+   +.+++|||++|...+.  .|.|.+|||++++||++++||+||++||||+++...++++.
T Consensus         5 ~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~--~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~   81 (226)
T 2fb1_A            5 YYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPA--MGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGA   81 (226)
T ss_dssp             TTTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSS--TTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEE
T ss_pred             ccccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCC--CCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEE
Confidence            35566778888988888   5678999999987553  58999999999999999999999999999999987776654

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.63  E-value=6.2e-16  Score=115.76  Aligned_cols=75  Identities=27%  Similarity=0.547  Sum_probs=56.7

Q ss_pred             CCCCCCCCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412           97 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus        97 ~~~~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      ++.+.+........+++++++.++++||++|.....+ .|.|.||||++++||++.+||+||++||||+.+....+
T Consensus        18 gP~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~   92 (158)
T 3hhj_A           18 GPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSL-AGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNL   92 (158)
T ss_dssp             ---------CEEEEEEEEEBCTTSEEEEEECCCTTSC-CCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGC
T ss_pred             CCccCCCCCceEEEEEEEEEeCCCEEEEEEeCCCCCC-CCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceE
Confidence            4555555555666777788888899999999866553 58999999999999999999999999999998876543

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.63  E-value=6.3e-16  Score=120.68  Aligned_cols=75  Identities=44%  Similarity=0.655  Sum_probs=57.0

Q ss_pred             CCCCCCCcceeeEEEEEEEcC-CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412           98 ANTLPANASHRVGVGAFVMNG-KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus        98 ~~~~p~~~~~~~~v~~~v~~~-~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ....+.++.+.++|++++++. +++|||+||+..   ..|.|.||||++++||++.+||+||++||||+++....++++
T Consensus        16 ~~~~~~~~~~~v~v~~~v~~~~~~~vLL~~r~~~---~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~   91 (199)
T 3h95_A           16 ENLYFQSMSHQVGVAGAVFDESTRKILVVQDRNK---LKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI   91 (199)
T ss_dssp             ----------CCEEEEEEEETTTTEEEEEEESSS---STTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             cccccccCcccceEEEEEEeCCCCEEEEEEEcCC---CCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEE
Confidence            344556677888998888875 589999998753   258999999999999999999999999999999987777775

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=113.37  Aligned_cols=68  Identities=34%  Similarity=0.468  Sum_probs=58.1

Q ss_pred             ceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .....+++++++.++++||++|.+.+  ..|.|.||||++++||++.+||+||++||||+++....+++.
T Consensus        18 ~~~~~v~~~i~~~~~~vLl~~r~~~~--~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~   85 (156)
T 3gg6_A           18 NVCYVVLAVFLSEQDEVLLIQEAKRE--CRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSV   85 (156)
T ss_dssp             TCEEEEEEECBCTTSEEEEEECCCTT--STTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             ceEEEEEEEEEeCCCEEEEEEecCCC--CCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEE
Confidence            33456777778888999999998655  368999999999999999999999999999999888777764

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.61  E-value=1.9e-15  Score=110.91  Aligned_cols=63  Identities=32%  Similarity=0.506  Sum_probs=53.9

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      ...+++++++.++++||++|.....+ .|.|.||||.+++||++.+||+||++||||+.+....
T Consensus         8 ~~~~~~vi~~~~~~vLl~~r~~~~~~-~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~   70 (144)
T 3r03_A            8 LLVTAAALIDPDGRVLLAQRPPGKSL-AGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC   70 (144)
T ss_dssp             EEEEEEEEBCTTSCEEEEECCTTSSS-TTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGG
T ss_pred             eEEEEEEEEcCCCEEEEEEeCCCCCC-CCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccc
Confidence            34566677888899999999866553 5999999999999999999999999999999887653

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.61  E-value=3.3e-15  Score=109.33  Aligned_cols=68  Identities=19%  Similarity=0.337  Sum_probs=56.1

Q ss_pred             CcceeeEEEEEEEc--CCce--EEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          104 NASHRVGVGAFVMN--GKRE--VLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       104 ~~~~~~~v~~~v~~--~~~~--vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      |..+.+++++++++  .+++  +||++|+..+    +.|.||||++++||++.+||+||++||||+.+....+++.
T Consensus         5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~----~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   76 (139)
T 2yyh_A            5 VKTPLLATDVIIRLWDGENFKGIVLIERKYPP----VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGV   76 (139)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS----CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_pred             ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC----CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEE
Confidence            45566777777776  6777  9999987653    3499999999999999999999999999999877766654

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.61  E-value=2.6e-15  Score=112.39  Aligned_cols=54  Identities=33%  Similarity=0.554  Sum_probs=46.7

Q ss_pred             cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       117 ~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      |++.++||+||+.+    ++.|.||||++++||++.+||+||++||||+++....++.
T Consensus        21 n~~~e~LL~~r~~~----~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~   74 (155)
T 3u53_A           21 NNAIEFLLLQASDG----IHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIE   74 (155)
T ss_dssp             SCSEEEEEEEESSS----SCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CCCcEEEEEEecCC----CCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeee
Confidence            45679999999754    4789999999999999999999999999999987766543

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.61  E-value=4.7e-16  Score=116.05  Aligned_cols=59  Identities=24%  Similarity=0.319  Sum_probs=52.5

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT  167 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~  167 (177)
                      +.+++++++++.++++||++|...+  ..|.|.||||++++||++.+||+||++||||+.+
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~~--~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~   75 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL   75 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSS--STTSEECCEEECCTTCCHHHHHHHHHHHHHSSCC
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCCC--CCCEEECCccccCCCCCHHHHHHHHHHHHHCCCC
Confidence            4568888888888999999998754  2689999999999999999999999999999985

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.61  E-value=1.1e-15  Score=117.08  Aligned_cols=68  Identities=26%  Similarity=0.317  Sum_probs=57.1

Q ss_pred             ceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+..++++++++.++++||++|.+.+. +.+.|.||||++++||++.+||+||++||||+++.....++
T Consensus        39 ~~~~~v~v~i~~~~~~vLL~~r~~~~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~  106 (182)
T 2yvp_A           39 GPVAASFVLPVTERGTALLVRQYRHPT-GKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLP  106 (182)
T ss_dssp             SSCEEEEEEEBCTTSEEEEEEEEEGGG-TEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECC
T ss_pred             ecCCEEEEEEEcCCCEEEEEEeccCCC-CCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEE
Confidence            444578888888889999999876553 35899999999999999999999999999999887665543

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.61  E-value=2.4e-15  Score=111.09  Aligned_cols=66  Identities=30%  Similarity=0.416  Sum_probs=55.1

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+.+++++++.++++||++|...+.+ .|.|.||||++++||++.+||+||++||||+.+....+++
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~   86 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENNSL-AGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKL   86 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTSTT-TTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCCCC-CCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEE
Confidence            34555566677799999999876543 5999999999999999999999999999999887666554

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.60  E-value=3e-15  Score=109.88  Aligned_cols=66  Identities=32%  Similarity=0.352  Sum_probs=50.4

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCC-CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFR-GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ..+++++.+ ++++||++|...+.. ..|.|.||||.+++||++.+||+||++||||+.+....+++.
T Consensus         7 ~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   73 (140)
T 3gwy_A            7 EVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLT   73 (140)
T ss_dssp             EEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             EEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEE
Confidence            345556666 789999999876530 258999999999999999999999999999999887776654

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.60  E-value=3.1e-15  Score=115.83  Aligned_cols=71  Identities=28%  Similarity=0.342  Sum_probs=54.0

Q ss_pred             cceeeEEEEEEEcCCc--eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          105 ASHRVGVGAFVMNGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       105 ~~~~~~v~~~v~~~~~--~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +....++++++++.++  ++||++|........|.|.||||++++||++++||+||++||||+++....+++.
T Consensus        31 ~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~  103 (194)
T 1nqz_A           31 PHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGE  103 (194)
T ss_dssp             --CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred             CCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEE
Confidence            3445566666667777  8999998764222468999999999999999999999999999999887776653

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.59  E-value=5.1e-15  Score=110.23  Aligned_cols=68  Identities=34%  Similarity=0.554  Sum_probs=56.3

Q ss_pred             eeeEEEEEEEcCCceEEEEEeec---CCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENS---GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~---~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ...++++++++.++++||++|.+   .+. ..|.|.||||.+++||++.+||+||++||||+.+....+++.
T Consensus        12 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~~-~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~   82 (159)
T 1sjy_A           12 ELRAAGVVLLNERGDILLVQEKGIPGHPE-KAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGA   82 (159)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----C-CCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             EEEeEEEEEEeCCCCEEEEEecccCcCCC-CCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEE
Confidence            34577778888889999999985   222 358999999999999999999999999999999877666553

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.59  E-value=3.6e-15  Score=107.00  Aligned_cols=61  Identities=44%  Similarity=0.699  Sum_probs=53.7

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +++++++++.++++||++|+.      |.|.||||++++||++.+||+||++||||+.+....+++.
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~   63 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP   63 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT------SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC------CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeE
Confidence            578888999888999999863      6899999999999999999999999999999877666543

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.59  E-value=6.5e-15  Score=114.04  Aligned_cols=68  Identities=26%  Similarity=0.467  Sum_probs=57.0

Q ss_pred             cceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       105 ~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ..+.+++++++++ +++|||++|...+.  .+.|.||||++++||++++||+||++||||+++....++++
T Consensus        37 ~~~~~~v~~ii~~-~~~vLL~~r~~~~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~  104 (189)
T 3cng_A           37 QNPKVIVGCIPEW-ENKVLLCKRAIAPY--RGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAV  104 (189)
T ss_dssp             CCCEEEEEEEEEE-TTEEEEEEESSSSS--TTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             CCCceEEEEEEEe-CCEEEEEEccCCCC--CCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEE
Confidence            3455677777777 78999999987653  58999999999999999999999999999999876666554

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.58  E-value=4.6e-15  Score=116.55  Aligned_cols=66  Identities=32%  Similarity=0.515  Sum_probs=55.2

Q ss_pred             CcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       104 ~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      |.++.++++++|++ +++|||++|+.     .|.|.||||++++||++.+||+||++||||+++....++++
T Consensus        64 ~~~~~~~v~~vv~~-~~~vLLv~r~~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~  129 (205)
T 3q1p_A           64 YQTPKVDIRAVVFQ-NEKLLFVKEKS-----DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAI  129 (205)
T ss_dssp             SCCCEEEEEEEEEE-TTEEEEEEC--------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred             CCCCcceEEEEEEE-CCEEEEEEEcC-----CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEE
Confidence            44566788888887 68999999873     47899999999999999999999999999999887777664

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.58  E-value=2.6e-15  Score=112.57  Aligned_cols=60  Identities=22%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ..++++++++ ++++||++|+.     .|.|.||||++++||++.+||+||++||||+++....++
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~   65 (159)
T 3f6a_A            6 HFTVSVFIVC-KDKVLLHLHKK-----AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI   65 (159)
T ss_dssp             CEEEEEEEEE-TTEEEEEECSS-----SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCC
T ss_pred             eEEEEEEEEE-CCEEEEEEcCC-----CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccc
Confidence            3466767777 68999999874     478999999999999999999999999999988655444

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.58  E-value=3.5e-15  Score=112.46  Aligned_cols=68  Identities=28%  Similarity=0.273  Sum_probs=56.5

Q ss_pred             ceeeEEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          106 SHRVGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       106 ~~~~~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ...+.+.+++++.+ +++||++|...+ | .|.|+||||.+++||++.+||+||++||||+.+....+++.
T Consensus         8 ~~~~~v~~vi~~~~~~~vLL~~r~~~~-~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   76 (161)
T 3exq_A            8 PVELVTMVMVTDPETQRVLVEDKVNVP-W-KAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGT   76 (161)
T ss_dssp             CEEEEEEEEEBCTTTCCEEEECCCCCT-T-TCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEE
T ss_pred             CceEEEEEEEEeCCCCEEEEEEccCCC-C-CCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEE
Confidence            34567777777776 799999988544 3 36799999999999999999999999999999887776664

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.58  E-value=6.6e-15  Score=109.27  Aligned_cols=64  Identities=31%  Similarity=0.526  Sum_probs=52.5

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .++|++++ +.++++||++|...   +.+.|.||||++++||++.+||+||++||||+++....+++.
T Consensus         5 ~~~v~~ii-~~~~~vLl~~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   68 (153)
T 3shd_A            5 HVTVACVV-HAEGKFLVVEETIN---GKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRM   68 (153)
T ss_dssp             EEEEEEEE-EETTEEEEEEEEET---TEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_pred             ceEEEEEE-EeCCEEEEEEecCC---CCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence            44555444 45789999998732   357899999999999999999999999999999888777664

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.57  E-value=1e-14  Score=111.80  Aligned_cols=66  Identities=27%  Similarity=0.361  Sum_probs=54.2

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +.++++ ++++.++++||++|.+.+  ..|.|.||||++++||++.+||+||++||||+.+....+++.
T Consensus        24 ~~~~~~-~vi~~~~~vLL~~r~~~~--~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~   89 (176)
T 3q93_A           24 SRLYTL-VLVLQPQRVLLGMKKRGF--GAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQ   89 (176)
T ss_dssp             EEEEEE-EEEECSSEEEEEEECSST--TTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEE
T ss_pred             CcEEEE-EEEEeCCEEEEEEEcCCC--CCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEE
Confidence            444444 555667899999987654  368999999999999999999999999999999887776654

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.57  E-value=6.9e-15  Score=108.88  Aligned_cols=65  Identities=28%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .+++++++ +.++++||++|...+.  .+.|.||||++++||++.+||+||++||||+++....+++.
T Consensus         8 ~~~v~~ii-~~~~~vLl~~r~~~~~--~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   72 (153)
T 2b0v_A            8 NVTVAAVI-EQDDKYLLVEEIPRGT--AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGI   72 (153)
T ss_dssp             EEEEEEEC-EETTEEEEEEECSSSS--CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred             CEEEEEEE-eeCCEEEEEEEcCCCC--CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEE
Confidence            34455444 5578999999987653  58999999999999999999999999999999877766654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.57  E-value=9.3e-15  Score=106.48  Aligned_cols=63  Identities=30%  Similarity=0.475  Sum_probs=52.0

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +++++++.++++||++|...+.+ .|.|.||||.+++||++.+||+||++||||+.+....+++
T Consensus        11 ~~~~ii~~~~~vLl~~r~~~~~~-~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~   73 (140)
T 2rrk_A           11 VVAAIIERDGKILLAQRPAQSDQ-AGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVA   73 (140)
T ss_dssp             EEEEEEEETTEEEEEECCSSCSC-CCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEE
T ss_pred             EEEEEEEcCCEEEEEEcCCCCCC-CCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEE
Confidence            33344467789999999766553 5999999999999999999999999999999887666554

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.57  E-value=7.1e-15  Score=108.00  Aligned_cols=57  Identities=37%  Similarity=0.539  Sum_probs=50.4

Q ss_pred             eEEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          109 VGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       109 ~~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      +++++++++.+ +++||++|+..    +|.|.||||++++||++.+||+||++||||+.+..
T Consensus        10 ~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~   67 (150)
T 2o1c_A           10 VSILVVIYAQDTKRVLMLQRRDD----PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVA   67 (150)
T ss_dssp             EEEEEEEEETTTCEEEEEECSSS----TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHH
T ss_pred             eEEEEEEEeCCCCEEEEEEecCC----CCceECCccccCCCCCHHHHHHHHHHHHhCCCccc
Confidence            57888888864 89999998754    47999999999999999999999999999998765

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.56  E-value=2e-14  Score=109.04  Aligned_cols=64  Identities=30%  Similarity=0.451  Sum_probs=55.7

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ...++++++++.++++||++|..     .+.|.+|||++++||++.+||+||++||||+++....+++.
T Consensus         7 ~~~~v~~~i~~~~~~vLl~~r~~-----~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~   70 (164)
T 2kdv_A            7 YRPNVGIVICNRQGQVMWARRFG-----QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILAS   70 (164)
T ss_dssp             EEEEEEEEEECTTSEEEEEEETT-----CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred             CCcEEEEEEEccCCEEEEEEEcC-----CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEE
Confidence            45678888888889999998863     47899999999999999999999999999999887776654

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.56  E-value=5e-15  Score=116.43  Aligned_cols=67  Identities=27%  Similarity=0.532  Sum_probs=57.3

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeC-CCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVD-EGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve-~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +..+|++++++.++++||+++.+.+. +.+.|+||||+++ +||++.+||+||++||||+++.....++
T Consensus        42 ~~~av~v~i~~~~~~vLLvrr~r~~~-~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~  109 (207)
T 1mk1_A           42 HFGAVAIVAMDDNGNIPMVYQYRHTY-GRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLV  109 (207)
T ss_dssp             ECCEEEEEECCTTSEEEEEEEEETTT-TEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCEEEEEEeecCCC-CCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEE
Confidence            44578878888889999999887664 4589999999999 9999999999999999999987766554

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.56  E-value=4.8e-15  Score=112.50  Aligned_cols=65  Identities=26%  Similarity=0.419  Sum_probs=54.5

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +..+|++++++ ++++||+++.+.+. +++.|.||||++++||++++||+||++||||+ +.....++
T Consensus        33 ~~~~v~vii~~-~~~vLL~~~~r~~~-~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~   97 (170)
T 1v8y_A           33 HKPAVAVIALR-EGRMLFVRQMRPAV-GLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLF   97 (170)
T ss_dssp             ECCEEEEEEEE-TTEEEEEECCBTTT-TBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEE
T ss_pred             cCCeEEEEEEE-CCEEEEEEEEeCCC-CCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeE
Confidence            34578878888 89999999876653 46899999999999999999999999999999 76665554

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.56  E-value=9.8e-15  Score=117.72  Aligned_cols=71  Identities=28%  Similarity=0.535  Sum_probs=56.9

Q ss_pred             CCcceeeEEEEEEE---cCCceEEEEEeecCCCCCCCeEEeceEEeCC--CCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          103 ANASHRVGVGAFVM---NGKREVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       103 ~~~~~~~~v~~~v~---~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~--gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .+..+.++|+++|+   +.+++|||++|...+.  .|.|.||||++++  ||++.+||+||++||||+++....+++.
T Consensus        17 ~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~--~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~   92 (240)
T 3gz5_A           17 AFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCT   92 (240)
T ss_dssp             ----CEEEEEEEEEEEETTEEEEEEEECCSSSS--TTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred             ccCCCccEEEEEEEEEeCCCcEEEEEECcCCCC--CCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEE
Confidence            34456677877777   4557999999986553  5899999999999  9999999999999999999887776653

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.56  E-value=8.9e-15  Score=107.56  Aligned_cols=63  Identities=27%  Similarity=0.295  Sum_probs=53.0

Q ss_pred             ceeeEEEEEEEcC-CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          106 SHRVGVGAFVMNG-KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       106 ~~~~~v~~~v~~~-~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ....++++++++. ++++||++|+      .|.|.||||++++||++.+||+||++||||+.+....+++
T Consensus        16 ~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~   79 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQAP------NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLG   79 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEECT------TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             eeeeEEEEEEECCCCCeEEEEEcC------CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEE
Confidence            4455777777776 7899999974      3789999999999999999999999999999987766554

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.56  E-value=1.2e-14  Score=113.47  Aligned_cols=65  Identities=26%  Similarity=0.428  Sum_probs=53.3

Q ss_pred             eeeEEEEEEE--cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          107 HRVGVGAFVM--NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       107 ~~~~v~~~v~--~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ....++++++  +.+++|||++|.+.    ++.|.||||++++||++++||+||++||||+++....+++.
T Consensus        39 ~~~~~~~vi~~~~~~~~vLLv~r~~~----~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~  105 (194)
T 2fvv_A           39 YKKRAACLCFRSESEEEVLLVSSSRH----PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGI  105 (194)
T ss_dssp             CEEEEEEEEESSTTCCEEEEEECSSC----TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             ccccEEEEEEEECCCCEEEEEEEeCC----CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEE
Confidence            3455666665  35689999998753    37899999999999999999999999999999887776654

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.56  E-value=1.3e-14  Score=105.60  Aligned_cols=61  Identities=36%  Similarity=0.500  Sum_probs=50.0

Q ss_pred             eEEEEEEEcC---CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          109 VGVGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       109 ~~v~~~v~~~---~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      .++++++++.   ++++||++|+.    +++.|.||||++++||++.+||+||++||||+.+....++
T Consensus         4 ~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~   67 (138)
T 1ktg_A            4 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIH   67 (138)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             EEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEe
Confidence            4677777764   46899999873    3579999999999999999999999999999966555443

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.56  E-value=1.1e-14  Score=112.40  Aligned_cols=67  Identities=25%  Similarity=0.326  Sum_probs=52.8

Q ss_pred             eEEEEEEEc--C-----CceEEEEEeecC-----CCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          109 VGVGAFVMN--G-----KREVLVVQENSG-----RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       109 ~~v~~~v~~--~-----~~~vLl~~r~~~-----~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ++|+++|+.  .     +++|||++|...     .....|.|.||||++++||++.+||+||++||||+++....+++.
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~  106 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGV  106 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEE
Confidence            555555553  2     468999999431     111468999999999999999999999999999999888877764

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.56  E-value=1.4e-14  Score=110.54  Aligned_cols=66  Identities=23%  Similarity=0.203  Sum_probs=54.9

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .++++++++.++++||++|.......+|.|.| |||++++||++.+||+||++||||+.......++
T Consensus        38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  104 (180)
T 2fkb_A           38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHG  104 (180)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEE
T ss_pred             eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEE
Confidence            46777788888999998887654434689999 9999999999999999999999999876655443

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.55  E-value=9.7e-15  Score=109.05  Aligned_cols=58  Identities=34%  Similarity=0.605  Sum_probs=51.0

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      ...++++++++.++++||++|...    +|.|.+|||++++||++++||+||++||||+++.
T Consensus        13 ~~~~v~~~i~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   70 (165)
T 1f3y_A           13 YRRNVGICLMNNDKKIFAASRLDI----PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA   70 (165)
T ss_dssp             CCCEEEEEEECTTSCEEEEEETTE----EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSE
T ss_pred             eeeeEEEEEECCCCcEEEEecCCC----CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChh
Confidence            456778888898899999998742    3799999999999999999999999999999864

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.55  E-value=1.5e-14  Score=109.41  Aligned_cols=64  Identities=28%  Similarity=0.555  Sum_probs=53.8

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ..+.|++++++ ++++||++|..+    .|.|.||||.+++||++.+||+||++||||+++....++++
T Consensus        22 ~~~~v~~ii~~-~~~vLL~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   85 (171)
T 3id9_A           22 MQVRVTGILIE-DEKVLLVKQKVA----NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYV   85 (171)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECSST----TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             eEEEEEEEEEE-CCEEEEEEEECC----CCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEE
Confidence            34567767766 589999998763    58999999999999999999999999999999877666654

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.55  E-value=9.1e-15  Score=111.25  Aligned_cols=61  Identities=25%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+.+++++++.++++||++|+      .|.|.||||++++||++.+||+||++||||+++....+++
T Consensus        15 ~~~~~~~ii~~~~~vLL~~r~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~   75 (163)
T 3f13_A           15 LARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLF   75 (163)
T ss_dssp             CEEEEEEECEETTEEEEEECC---------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred             ceEEEEEEEEeCCEEEEEEEC------CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEE
Confidence            345565666777899999886      3789999999999999999999999999999988776654

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.54  E-value=1.6e-14  Score=111.61  Aligned_cols=62  Identities=19%  Similarity=0.311  Sum_probs=53.2

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      .++++++++.++++||++|.......+|.|.+ |||++++||++++||+||++||||+++...
T Consensus        33 ~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~   95 (190)
T 1hzt_A           33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPP   95 (190)
T ss_dssp             ECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCC
T ss_pred             EEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhh
Confidence            36777888888999999987544334689999 999999999999999999999999988765

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.54  E-value=2.2e-14  Score=106.07  Aligned_cols=57  Identities=23%  Similarity=0.363  Sum_probs=47.6

Q ss_pred             eEEEEEEE---cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          109 VGVGAFVM---NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       109 ~~v~~~v~---~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      .+|.++++   +.++++||++|..     .|.|.||||++++||++.+||+||++||||+++...
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~   65 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVK   65 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS-----SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCC
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC-----CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccc
Confidence            34544554   5668999999975     378999999999999999999999999999987653

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.54  E-value=7.6e-14  Score=114.56  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEEEEEEcCCc
Q 030412           41 SLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKR  120 (177)
Q Consensus        41 ~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~~v~~~~~  120 (177)
                      ..-...+..|....+     .||.+-..+...           ...+...+     ..+....|+....++.++ ++.++
T Consensus        94 ~~~a~~l~~w~~~~~-----fC~~CG~~~~~~-----------~~~~~~~C-----~~C~~~~yp~~~~~viv~-v~~~~  151 (269)
T 1vk6_A           94 AGRGVQLAEFYRSHK-----YCGYCGHEMYPS-----------KTEWAMLC-----SHCRERYYPQIAPCIIVA-IRRDD  151 (269)
T ss_dssp             HHHHHHHHHHHHTTS-----BCTTTCCBEEEC-----------SSSSCEEE-----SSSSCEECCCCEEEEEEE-EEETT
T ss_pred             HHHHHHHHhhhhcCC-----ccccCCCcCccC-----------CCceeeeC-----CCCCCEecCCCCcEEEEE-EEeCC
Confidence            345566788988865     677665554421           12222222     233444445555555544 44568


Q ss_pred             eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ++||++|+..+   .|.|.+|||++|+||++++||+||++||||+++....+++
T Consensus       152 ~vLL~rr~~~~---~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~  202 (269)
T 1vk6_A          152 SILLAQHTRHR---NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVT  202 (269)
T ss_dssp             EEEEEEETTTC---SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred             EEEEEEecCCC---CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEE
Confidence            99999998654   4899999999999999999999999999999988777665

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.53  E-value=6e-15  Score=110.51  Aligned_cols=57  Identities=28%  Similarity=0.448  Sum_probs=48.6

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      +.+++++++ ++++||++|+.     .|.|.||||++++||++.+||+||++||||+++....
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~-----~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~   58 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR-----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG   58 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT-----TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECC
T ss_pred             eEEEEEEEE-CCEEEEEEEcC-----CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceecc
Confidence            356667777 78999999864     4789999999999999999999999999999876543

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.53  E-value=5.4e-16  Score=127.41  Aligned_cols=91  Identities=24%  Similarity=0.347  Sum_probs=64.2

Q ss_pred             hHHHhcce---eeeecCCcEEEEEeeecCCCCCCCCC---cceeeEEEEEEEcC-CceEEEEEeecCCCCCCCeEEeceE
Q 030412           71 EPAVKEGF---WFHHAEPNYLMLVYWIPGGANTLPAN---ASHRVGVGAFVMNG-KREVLVVQENSGRFRGTGIWKFPTG  143 (177)
Q Consensus        71 ~~~~~~gf---~~~~~~~~~~~l~~~l~~~~~~~p~~---~~~~~~v~~~v~~~-~~~vLl~~r~~~~~~~~~~w~lPgG  143 (177)
                      |.+...+|   .||||.    ++..|.+.....++.+   ......+++++++. ++++||++|.+.    ++.|.+|||
T Consensus        62 p~~~~~~f~~~~f~~~~----~l~~~~~~~~~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~~----~g~W~lPgG  133 (271)
T 2a6t_A           62 PSLGLRVFSAKLFAHCP----LLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKA----SSGWGFPKG  133 (271)
T ss_dssp             CCCCHHHHHHHHHTTCH----HHHHC---CCHHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESST----TCCCBCSEE
T ss_pred             CcccHHHHHHHHhhhhh----hhhcccccchhHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeCC----CCeEECCcc
Confidence            34455566   788876    4455655443333322   22233567777776 489999998753    478999999


Q ss_pred             EeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          144 VVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       144 ~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      ++++||++++||+||++||||+++..
T Consensus       134 ~ve~gEs~~eAA~REl~EEtGl~~~~  159 (271)
T 2a6t_A          134 KIDKDESDVDCAIREVYEETGFDCSS  159 (271)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred             cCCCCcCHHHHHHHHHHHHhCCCcee
Confidence            99999999999999999999998764

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.53  E-value=1.6e-14  Score=113.09  Aligned_cols=64  Identities=23%  Similarity=0.308  Sum_probs=53.0

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+|++++++.+ ++||+++.+.+. +.+.|+||||.+|+||++++||+||++||||+++.....++
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~~~-~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~  113 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAVGT-ESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLK  113 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEETTT-TEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             CEEEEEEEECC-EEEEEEcccCCC-CCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEE
Confidence            36666667776 999998866553 45799999999999999999999999999999987766654

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.53  E-value=2.4e-14  Score=112.89  Aligned_cols=68  Identities=16%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             eeeEEEEEEEc-CCceEEEEEeecCCCC----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMN-GKREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~-~~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +..+|++++++ .++++||+++.+.+..    +.+.|+||||.+|+||++++||+||++||||+.+..+..++
T Consensus        56 ~~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~  128 (209)
T 1g0s_A           56 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVL  128 (209)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_pred             CCCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeE
Confidence            34577778888 5789999887655432    24789999999999999999999999999999987766554

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.53  E-value=2.1e-14  Score=112.87  Aligned_cols=66  Identities=32%  Similarity=0.557  Sum_probs=55.4

Q ss_pred             CCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          103 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       103 ~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .|.++.+.|.++|+++ ++|||++|+      .+.|.||||.+++||++.+||+||++||||+.+....+++.
T Consensus        65 ~y~~~~~~v~~vv~~~-~~vLLvrr~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~  130 (206)
T 3o8s_A           65 GYQTPKLDTRAAIFQE-DKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAI  130 (206)
T ss_dssp             ---CCEEEEEEEEEET-TEEEEEECT------TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             CCCCCCccEEEEEEEC-CEEEEEEec------CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE
Confidence            3556677888888875 899999987      37899999999999999999999999999999887776654

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.52  E-value=2.1e-14  Score=108.61  Aligned_cols=63  Identities=21%  Similarity=0.234  Sum_probs=53.2

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEE-eceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWK-FPTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      ..++++++++.++++||++|...+...+|.|+ +|||++++||++.+||+||++||||+++...
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~   97 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDAL   97 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCccccc
Confidence            45677778888899999998654433368999 9999999999999999999999999988764

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.51  E-value=6.4e-14  Score=108.96  Aligned_cols=55  Identities=29%  Similarity=0.523  Sum_probs=47.6

Q ss_pred             eeeEEEEEEEcCCc-eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412          107 HRVGVGAFVMNGKR-EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID  166 (177)
Q Consensus       107 ~~~~v~~~v~~~~~-~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~  166 (177)
                      ..+++++++++.++ ++||++++.     .|.|.||||++++||++.+||+||++||||++
T Consensus        44 ~h~~~~~vv~~~~~~~vLL~~r~~-----~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~   99 (197)
T 3fcm_A           44 AHLTSSAFAVNKERNKFLMIHHNI-----YNSWAWTGGHSDNEKDQLKVAIKELKEETGVK   99 (197)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEETT-----TTEEECEEEECTTCCBHHHHHHHHHHHHHCCS
T ss_pred             ccEEEEEEEEECCCCEEEEEEecC-----CCCEECCccccCCCCCHHHHHHHHHHHHHCCC
Confidence            34567777888665 999999873     47999999999999999999999999999997

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.51  E-value=5.6e-15  Score=106.08  Aligned_cols=59  Identities=24%  Similarity=0.425  Sum_probs=50.0

Q ss_pred             EEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412          113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus       113 ~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      +++++.++++||++|+.... ..|.|.||||++++||++.+||+||++||||+.+.....
T Consensus         9 ~ii~~~~~~vLl~~r~~~~~-~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~   67 (129)
T 1mut_A            9 GIIRNENNEIFITRRAADAH-MANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL   67 (129)
T ss_dssp             EECEETTTEEEEEECSSCCS-SSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECC
T ss_pred             EEEEecCCEEEEEEeCCCCC-CCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceE
Confidence            35567789999999987654 359999999999999999999999999999998765443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.51  E-value=2.1e-14  Score=106.79  Aligned_cols=66  Identities=18%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             ceeeEEEEEEEcCCce----EEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          106 SHRVGVGAFVMNGKRE----VLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       106 ~~~~~v~~~v~~~~~~----vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      ....++++++.+ +++    +|+++|...+ + .| |.||||++++||++.+||+||++||||+++....+++.
T Consensus         6 ~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~-~-~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   75 (155)
T 2b06_A            6 LTILTNICLIED-LETQRVVMQYRAPENNR-W-SG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGI   75 (155)
T ss_dssp             CEEEEEEEEEEE-TTTTEEEEEEEC------C-CE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEE
T ss_pred             CcEEEEEEEEEE-CCCCeEEEEEEECCCCC-C-CC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEE
Confidence            345667777776 444    8888887655 3 35 99999999999999999999999999999887776664

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.50  E-value=4.7e-14  Score=109.33  Aligned_cols=60  Identities=30%  Similarity=0.453  Sum_probs=49.9

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .+++++.+ +++|||++|+.     .|.|.+|||++++||++.+||+||++||||+.+....++++
T Consensus         6 v~~~vi~~-~~~vLL~~r~~-----~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   65 (188)
T 3fk9_A            6 VTNCIVVD-HDQVLLLQKPR-----RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGI   65 (188)
T ss_dssp             EEEEEEEE-TTEEEEEECTT-----TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEE
T ss_pred             EEEEEEEE-CCEEEEEEeCC-----CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEE
Confidence            34445554 68999999853     58999999999999999999999999999999887766554

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.50  E-value=5.3e-14  Score=104.57  Aligned_cols=59  Identities=25%  Similarity=0.347  Sum_probs=49.5

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+.+++++++ ++++||++|       .|.|.||||++++||++.+||+||++||||+++....+++
T Consensus        19 ~~~~~~ii~~-~~~vLl~~r-------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~   77 (154)
T 2pqv_A           19 GVRATALIVQ-NHKLLVTKD-------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAF   77 (154)
T ss_dssp             EEEEEECCEE-TTEEEEEEE-------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred             eEEEEEEEEE-CCEEEEEec-------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEE
Confidence            3566666665 689999998       2689999999999999999999999999999887666554

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.49  E-value=1.1e-13  Score=113.47  Aligned_cols=67  Identities=27%  Similarity=0.458  Sum_probs=55.0

Q ss_pred             CCCCCcceeeEEEEEEEc--C---CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          100 TLPANASHRVGVGAFVMN--G---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       100 ~~p~~~~~~~~v~~~v~~--~---~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      ..+.|..+.++|+++|+.  .   +++|||++|...+.  .|.|.||||++++||++++||+||++||||+++.
T Consensus        31 ~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~--~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~  102 (273)
T 2fml_A           31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPF--RNSWALPGGFVNRNESTEDSVLRETKEETGVVIS  102 (273)
T ss_dssp             CCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSS--TTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCC
T ss_pred             hcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCC--CCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCC
Confidence            344566777888887775  2   35899999987653  5899999999999999999999999999997654

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.48  E-value=3.1e-14  Score=104.80  Aligned_cols=55  Identities=33%  Similarity=0.534  Sum_probs=47.2

Q ss_pred             EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      .+++++++.+ +++||+++..     .|.|.||||++++||++.+||+||++||||+++..
T Consensus         6 ~~~~~i~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   61 (146)
T 2jvb_A            6 VRGAAIFNENLSKILLVQGTE-----SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD   61 (146)
T ss_dssp             CEEEEEBCTTSSEEEEECCSS-----SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS
T ss_pred             EEEEEEEeCCCCEEEEEEEcC-----CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH
Confidence            4566777765 8999998763     47899999999999999999999999999998753

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.47  E-value=4.6e-14  Score=112.53  Aligned_cols=80  Identities=18%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             ecCCCCCCCCCcceeeEEEEEEEc-CCceEEEEEeecCCCC------------------------------CCCeEEece
Q 030412           94 IPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENSGRFR------------------------------GTGIWKFPT  142 (177)
Q Consensus        94 l~~~~~~~p~~~~~~~~v~~~v~~-~~~~vLl~~r~~~~~~------------------------------~~~~w~lPg  142 (177)
                      .+++......+..+..+|++++++ .++++||+++.+.+..                              ..+.|+|||
T Consensus        22 ~~~G~~~~~e~v~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPg  101 (218)
T 3q91_A           22 SMNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCA  101 (218)
T ss_dssp             -------------CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEE
T ss_pred             CCCCCEEEEEEEEcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCc
Confidence            355544444444556688888888 4678999887653321                              147999999


Q ss_pred             EEeCC-CCCHHHHHHHHHHHHhCCcc--cceeEE
Q 030412          143 GVVDE-GEDICVAAVREVKEETSIDT--EFVEVL  173 (177)
Q Consensus       143 G~ve~-gE~~~~aa~REl~EEtGl~~--~~~~~l  173 (177)
                      |.+|+ ||++++||+||++||||+++  ..+..+
T Consensus       102 G~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l  135 (218)
T 3q91_A          102 GLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRV  135 (218)
T ss_dssp             EECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEE
T ss_pred             ceeCCCCCCHHHHHHHHHHHHhCCccccCceEEE
Confidence            99999 99999999999999999998  554443

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.46  E-value=9e-14  Score=108.02  Aligned_cols=65  Identities=20%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             eEEEEEEEcC-CceEEEEEeecCCC----C-CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNG-KREVLVVQENSGRF----R-GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~-~~~vLl~~r~~~~~----~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+|++++++. ++++||+++.+.+.    . +.+.|+||||+++ ||++++||+||++||||+++.....++
T Consensus        46 ~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~  116 (191)
T 3o6z_A           46 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLF  116 (191)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEE
T ss_pred             CEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEE
Confidence            4677777774 68999998876432    0 3579999999999 999999999999999999987766654

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.45  E-value=1.9e-13  Score=114.61  Aligned_cols=66  Identities=30%  Similarity=0.483  Sum_probs=54.7

Q ss_pred             CCCCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          101 LPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       101 ~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      ...|+...++++++++ .++++||++|+..+  +.|.|.||||++++||++++||+||++||||+++..
T Consensus       201 ~~~~~~~~~~v~~vv~-~~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~  266 (352)
T 2qjt_B          201 KAPFKPNFVTVDALVI-VNDHILMVQRKAHP--GKDLWALPGGFLECDETIAQAIIRELFEETNINLTH  266 (352)
T ss_dssp             SSSSCCEEEEEEEEEE-ETTEEEEEEESSSS--STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCH
T ss_pred             ccCCCCCceEEEEEEE-ECCEEEEEEEcCCC--CCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCccc
Confidence            3345556677777777 56899999998765  358999999999999999999999999999998763

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.45  E-value=1.8e-13  Score=114.04  Aligned_cols=63  Identities=27%  Similarity=0.460  Sum_probs=53.1

Q ss_pred             CcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       104 ~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      ++...++++++++ .++++||++|+..+  ..|.|.+|||++++||++++||+||++||||+++..
T Consensus       199 ~~~~~~~v~~vi~-~~~~vLL~~r~~~~--~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  261 (341)
T 2qjo_A          199 YAPTFITTDAVVV-QAGHVLMVRRQAKP--GLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPL  261 (341)
T ss_dssp             SCCCEEEEEEEEE-ETTEEEEEECCSSS--STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCH
T ss_pred             CCCCceEEEEEEE-eCCEEEEEEecCCC--CCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCcccc
Confidence            4445677777777 46899999998754  368999999999999999999999999999998763

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.44  E-value=2e-13  Score=107.64  Aligned_cols=64  Identities=28%  Similarity=0.408  Sum_probs=48.6

Q ss_pred             eEEEEEEEcC--CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          109 VGVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       109 ~~v~~~v~~~--~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      +++.+++.+.  ++++||+++.+.+. +.+.|+||||++|+||++++||+||++||||+++....++
T Consensus        64 v~v~~v~~~~~~~~~vlLv~q~R~~~-~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l  129 (212)
T 2dsc_A           64 VAVIPVLQRTLHYECIVLVKQFRPPM-GGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECS  129 (212)
T ss_dssp             EEEEEEEECTTSCCEEEEEEEEEGGG-TEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             EEEEEEEeCCCCCcEEEEEEeecCCC-CCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEe
Confidence            3344334443  35788888755543 3478999999999999999999999999999987765544

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.43  E-value=2.4e-13  Score=101.30  Aligned_cols=65  Identities=15%  Similarity=0.339  Sum_probs=51.2

Q ss_pred             eeeEEEEEEEcC---CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHH-HHHHHHHHHHhC-CcccceeE
Q 030412          107 HRVGVGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDIC-VAAVREVKEETS-IDTEFVEV  172 (177)
Q Consensus       107 ~~~~v~~~v~~~---~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~-~aa~REl~EEtG-l~~~~~~~  172 (177)
                      ....+++++.+.   ++++||+||.....+ .|.|+||||.+++||++. +||+||++|||| +.+.....
T Consensus        18 ~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~-~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~   87 (155)
T 1x51_A           18 EESSATCVLEQPGALGAQILLVQRPNSGLL-AGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRH   87 (155)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCSTT-CSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEE
T ss_pred             eEEEEEEEEEecCCCCCEEEEEECCCCCCC-CceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeee
Confidence            444555566654   589999998766554 489999999999999996 999999999999 87655443

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.38  E-value=2.3e-13  Score=108.07  Aligned_cols=66  Identities=23%  Similarity=0.322  Sum_probs=47.3

Q ss_pred             EEEEEEEcCCceEEEEEeecCCC--CCCCeEEe-ceEEeCCCCC------HHHHHHHHHHHHhCCcccceeEEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRF--RGTGIWKF-PTGVVDEGED------ICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~--~~~~~w~l-PgG~ve~gE~------~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .+..+++..++++|+++|..++.  .-.+.|.+ |||++++||+      +++||+||++||||+++....++++
T Consensus        69 ~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~  143 (211)
T 3e57_A           69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGL  143 (211)
T ss_dssp             EEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEE
Confidence            34445555679999999976541  01378999 9999999998      5999999999999998877777765

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.31  E-value=5.6e-12  Score=106.80  Aligned_cols=54  Identities=30%  Similarity=0.380  Sum_probs=46.6

Q ss_pred             cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       117 ~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +++.+|||++|+.     .+.|.||||++++||++++||+||++||||+++....+++.
T Consensus        35 ~~~~~vLLv~r~~-----~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~   88 (364)
T 3fjy_A           35 LDSIEVCIVHRPK-----YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCE   88 (364)
T ss_dssp             HTTEEEEEEEETT-----TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             CCceEEEEEEcCC-----CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccce
Confidence            3456899999853     48999999999999999999999999999999877776653

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.29  E-value=1.9e-12  Score=102.23  Aligned_cols=54  Identities=24%  Similarity=0.218  Sum_probs=45.7

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCC-CHHHHHHHHHHHHhCCcccce
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGE-DICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~  170 (177)
                      +.+++++.++++||++|.      .|.|+||||++++|| ++++||+||++||||+.+...
T Consensus        47 vv~~i~~~~~~vLl~~r~------~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~  101 (212)
T 1u20_A           47 KLFDRVPIRRVLLMMMRF------DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV  101 (212)
T ss_dssp             EETTTEECCEEEEEEEET------TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred             EEEEEEecCCEEEEEEeC------CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcccc
Confidence            444455777899998872      479999999999999 999999999999999987644

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.23  E-value=3e-11  Score=97.08  Aligned_cols=60  Identities=22%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCC------CC---HHHHHHHHHHHHhCCccc
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEG------ED---ICVAAVREVKEETSIDTE  168 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~g------E~---~~~aa~REl~EEtGl~~~  168 (177)
                      .++.+++++.++++||+||.......+|.|++| ||++++|      |+   +.+||+||++||||+.+.
T Consensus        60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~  129 (235)
T 2dho_A           60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLE  129 (235)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGG
T ss_pred             EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence            467777888889999999876654457999999 5999999      78   599999999999999864

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.23  E-value=9.4e-12  Score=106.04  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      ...+++++.+.++++||+||.....+ .|.|+||||.+++| ++++|+.||+.||||+++....
T Consensus       240 ~~~~~~vi~~~~g~vLL~rR~~~g~~-~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~  301 (369)
T 3fsp_A          240 VPLAVAVLADDEGRVLIRKRDSTGLL-ANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTE  301 (369)
T ss_dssp             EEEEEEEEECSSSEEEEEECCSSSTT-TTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECC
T ss_pred             EEEEEEEEEeCCCEEEEEECCCCCCc-CCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeec
Confidence            34455666778899999999876655 49999999999999 9999999999999999875544

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.19  E-value=3.4e-11  Score=97.48  Aligned_cols=60  Identities=20%  Similarity=0.197  Sum_probs=50.9

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEece-EEeCCC------CCH---HHHHHHHHHHHhCCccc
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPT-GVVDEG------EDI---CVAAVREVKEETSIDTE  168 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPg-G~ve~g------E~~---~~aa~REl~EEtGl~~~  168 (177)
                      .++.+++++.++++||+||.......+|.|++|+ |++++|      |++   .+||+||++||||+.+.
T Consensus        71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~  140 (246)
T 2pny_A           71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGE  140 (246)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTT
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence            4567778888899999998766544579999995 999999      886   99999999999999864

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.16  E-value=5.5e-11  Score=98.43  Aligned_cols=41  Identities=32%  Similarity=0.601  Sum_probs=37.9

Q ss_pred             eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412          121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID  166 (177)
Q Consensus       121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~  166 (177)
                      ++||++|..     .|.|.||||++++||++.+||+||++||||+.
T Consensus       140 ~vLl~~r~~-----~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~  180 (292)
T 1q33_A          140 QFVAIKRKD-----CGEWAIPGGMVDPGEKISATLKREFGEEALNS  180 (292)
T ss_dssp             EEEEEECTT-----TCSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred             EEEEEEecC-----CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence            699999874     37899999999999999999999999999987

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.14  E-value=4.4e-11  Score=96.15  Aligned_cols=61  Identities=30%  Similarity=0.347  Sum_probs=48.0

Q ss_pred             eeEEEEEEEcC--C--ceEEEEEeecCCCCCCCeEEeceEEeCCCCC--------------------HHHHHHHHHHHHh
Q 030412          108 RVGVGAFVMNG--K--REVLVVQENSGRFRGTGIWKFPTGVVDEGED--------------------ICVAAVREVKEET  163 (177)
Q Consensus       108 ~~~v~~~v~~~--~--~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~--------------------~~~aa~REl~EEt  163 (177)
                      +.++.+++++.  +  .+|||.||.......+|.|.||||.+|++|+                    +..||+||++|||
T Consensus         8 r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~   87 (232)
T 3qsj_A            8 RKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI   87 (232)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence            34555555543  3  3899999987664446999999999999987                    5899999999999


Q ss_pred             CCccc
Q 030412          164 SIDTE  168 (177)
Q Consensus       164 Gl~~~  168 (177)
                      |+.+.
T Consensus        88 Gl~l~   92 (232)
T 3qsj_A           88 GWLLA   92 (232)
T ss_dssp             SCCCS
T ss_pred             Cceec
Confidence            99754

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.08  E-value=8.3e-11  Score=93.46  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=36.7

Q ss_pred             eEEEEEeecCCCCCCCeEEeceEEeCCCC-CHHHHHHHHHHHHhCCccc
Q 030412          121 EVLVVQENSGRFRGTGIWKFPTGVVDEGE-DICVAAVREVKEETSIDTE  168 (177)
Q Consensus       121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~  168 (177)
                      ++|+..|.      .+.|+||||.+|+|| ++++||+||++||||+.+.
T Consensus        66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~  108 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAA  108 (217)
T ss_dssp             EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGG
T ss_pred             cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            56665554      378999999999999 9999999999999999876

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.05  E-value=1.6e-09  Score=90.03  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=78.5

Q ss_pred             CEEEecCCCCChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCC
Q 030412           25 GVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPAN  104 (177)
Q Consensus        25 gv~v~~~~~~~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~  104 (177)
                      +|++... ..+.++=.+.|+.-+..|++.+.-.=|      ..++.++....|      ......+    +..  ..+..
T Consensus        54 ~v~l~~~-~~~~~~rt~~~~~~~~~~~~~g~~~gw------r~E~~~V~~~~~------~~~~~~~----eR~--~~~~~  114 (300)
T 3dup_A           54 AVLLSAS-LRTPQSRTRAVADVVDRLADEGVVPAP------RGELYRVNQSWG------EPTLMLL----DRA--VVPTF  114 (300)
T ss_dssp             EEEECTT-CCSHHHHHHHHHHHHHHHHHTTSSCCC------CSCEEEECSSTT------SCCCEEE----EGG--GTGGG
T ss_pred             EEEEecC-CCCHHHHHHHHHHHHHHHHHcCCCCcc------ccccEEeecCCC------CeeeEEE----Ehh--hcccc
Confidence            4444332 356677788888889999998731112      122222221111      0111221    111  11112


Q ss_pred             cceeeEEEEEEEcCCc---eEEEEEeecCCCCCCCeEE-eceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412          105 ASHRVGVGAFVMNGKR---EVLVVQENSGRFRGTGIWK-FPTGVVDEGEDICVAAVREVKEETSIDTE  168 (177)
Q Consensus       105 ~~~~~~v~~~v~~~~~---~vLl~~r~~~~~~~~~~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~  168 (177)
                      .-...+|-+.+++.++   ++||.||.......+|+|+ +|+|++++||++.+||+||+.||+|+...
T Consensus       115 G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~  182 (300)
T 3dup_A          115 GVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEA  182 (300)
T ss_dssp             TCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHH
T ss_pred             ceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChh
Confidence            2223455555666555   8999999887777789995 89999999999999999999999999864

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.97  E-value=2.2e-09  Score=84.40  Aligned_cols=51  Identities=27%  Similarity=0.373  Sum_probs=41.5

Q ss_pred             eEEEEEEE-cCCc--eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCC
Q 030412          109 VGVGAFVM-NGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI  165 (177)
Q Consensus       109 ~~v~~~v~-~~~~--~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl  165 (177)
                      .+|.++++ +..+  +|||+|+.      .+.|.||||.+++||+.++|++||+.||+|+
T Consensus        59 ~sV~avil~~~~~~phVLLlq~~------~~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           59 RTVEGVLIVHEHRLPHVLLLQLG------TTFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE------TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             eEEEEEEEEcCCCCcEEEEEEcC------CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            44444444 4444  79999985      3689999999999999999999999999995

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.82  E-value=1.4e-09  Score=85.07  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             EEEEEeecCCCCCCCeEEeceEEeCCCC-CHHHHHHHHHHHHhCC-cccc
Q 030412          122 VLVVQENSGRFRGTGIWKFPTGVVDEGE-DICVAAVREVKEETSI-DTEF  169 (177)
Q Consensus       122 vLl~~r~~~~~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl-~~~~  169 (177)
                      +|++.|.      .|.|+||||+||+|| ++++|+.||+.||+|+ .+..
T Consensus        46 iLmQ~R~------~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~   89 (214)
T 3kvh_A           46 VLMQMRF------DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTE   89 (214)
T ss_dssp             EEEEEET------TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCG
T ss_pred             EEEeeee------CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeee
Confidence            4555554      489999999999999 9999999999999996 4443

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.61  E-value=4.9e-08  Score=81.80  Aligned_cols=57  Identities=12%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHh-CCcccceeEEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET-SIDTEFVEVLAF  175 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEt-Gl~~~~~~~l~~  175 (177)
                      .+.|++++. .+++|||+  .     ..| |.||||.++++++  ++|+||++||| |++++...++++
T Consensus       183 ~~~vgaii~-~~g~vLL~--~-----~~G-W~LPG~~~~~~~~--~~a~RE~~EEttGl~v~~~~L~~v  240 (321)
T 3rh7_A          183 EIRLGAVLE-QQGAVFLA--G-----NET-LSLPNCTVEGGDP--ARTLAAYLEQLTGLNVTIGFLYSV  240 (321)
T ss_dssp             CEEEEEEEE-SSSCEEEB--C-----SSE-EBCCEEEESSSCH--HHHHHHHHHHHHSSCEEEEEEEEE
T ss_pred             cceEEEEEE-ECCEEEEe--e-----CCC-ccCCcccCCCChh--HHHHHHHHHHhcCCEEeeceEEEE
Confidence            455665554 46899999  2     247 9999987665554  59999999997 999998888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	3e-12
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	2e-11
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	3e-11
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	8e-11
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	5e-10
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	2e-09
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	9e-09
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	1e-08
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-08
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-08
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-07
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-06
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	3e-06
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	3e-06
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	2e-05
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	2e-05
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	3e-05
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	3e-05
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	2e-04
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	0.001
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	0.002

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 58.5 bits (141), Expect = 3e-12
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
            +G G  V N KREVL++++  G       W FP G  + GE +  AAVREV EET +  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRMGF------WVFPKGHPEPGESLEEAAVREVWEETGVRA 55

Query: 168 EFVEVL 173
           E +  L
Sbjct: 56  EVLLPL 61

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 107 HRVGVGAFVMNGKREVLVVQE--NSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164
                G  ++N + ++L+VQE    G     G+W  P+G V++GE+   AAVRE  EET 
Sbjct: 11  ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETG 70

Query: 165 IDTEFVEVLA 174
           +    V+ L 
Sbjct: 71  LRVRPVKFLG 80

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 3e-11
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 105 ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164
            + R+     V+  +R VL+  +  G   G   W    G V EGE I   A RE++EE+ 
Sbjct: 2   GASRLYTLVLVLQPQR-VLLGMKKRGFGAGR--WNGFGGKVQEGETIEDGARRELQEESG 58

Query: 165 IDTEFVEVLA 174
           +  + +  + 
Sbjct: 59  LTVDALHKVG 68

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 55.2 bits (132), Expect = 8e-11
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            R      V   +   +V+ +        G +  P G ++  E    A  REV EE  I 
Sbjct: 16  TRYAAYIIVSKPENNTMVLVQ-----APNGAYFLPGGEIEGTETKEEAIHREVLEELGIS 70

Query: 167 TEFVEVLAF 175
            E    L  
Sbjct: 71  VEIGCYLGE 79

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 53.3 bits (127), Expect = 5e-10
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
           +R  VG  +MN  +++        R      W+ P G +DEGED   AA+RE++EET +
Sbjct: 13  YRRNVGICLMNNDKKIFAAS----RLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGV 67

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 51.3 bits (122), Expect = 2e-09
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 108 RVGV-GAFVMNGKRE-VLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
           R+ V GA +++   +  ++V+     ++ +  W FP G +D+ E     A+REV EET  
Sbjct: 1   RIPVRGAIMLDMSMQQCVLVK----GWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 56

Query: 166 DTEFVEVL 173
           D       
Sbjct: 57  DCSSRINP 64

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 9e-09
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
            R     F    + EVL+V       R    W  P G ++  E+  VAAVREV EE  + 
Sbjct: 12  KRAACLCFRSESEEEVLLVS----SSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVK 67

Query: 167 TEFVEVLA 174
                ++ 
Sbjct: 68  GTLGRLVG 75

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
            V +   V N + E L+ +  +   +G   W  P G V + E +  A  R    E  +  
Sbjct: 18  LVSLDFIVENSRGEFLLGKRTNRPAQGY--WFVPGGRVQKDETLEAAFERLTMAELGLRL 75

Query: 168 EFVEVLAF 175
                  +
Sbjct: 76  PITAGQFY 83

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 49.4 bits (117), Expect = 1e-08
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
            V V A +    +  L+V+E             P G ++ GE I  A  REV EET    
Sbjct: 3   NVTVAAVIEQDDK-YLLVEEIPRGTAIK--LNQPAGHLEPGESIIQACSREVLEETGHSF 59

Query: 168 EFVEVLAFRQ 177
               +     
Sbjct: 60  LPEVLTGIYH 69

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 1e-08
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167
           R  +   V N   E L++Q       G   W  P G V+ GED    A+R  +EE  I+ 
Sbjct: 17  RRCLIPKVDNNAIEFLLLQ----ASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEA 72

Query: 168 EFVEVL 173
             + ++
Sbjct: 73  GQLTII 78

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
           V  G  V NGK  VL+V+      +  G++ +P G V+  E    A  RE +EET I  E
Sbjct: 3   VTSGVLVENGK--VLLVKH-----KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55

Query: 169 FVEVLA 174
            +    
Sbjct: 56  PIGFTY 61

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174
           + + ++      +  G W  P G+VD GE I     RE  EE     +      
Sbjct: 140 QFVAIKR-----KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEK 188

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTG-IWKFPTGVVDEGEDICVAAVREVKEETSI 165
           H     +++ N K ++LV +    +    G       G    GE    A +R  + E  +
Sbjct: 2   HLA-FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 60

Query: 166 DTEFVE 171
           +    E
Sbjct: 61  EITPPE 66

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168
             + +VL++Q     FR +  W  P G V+  E    + +RE KEET +   
Sbjct: 51  ADQLKVLLIQRKGHPFRNS--WALPGGFVNRNESTEDSVLRETKEETGVVIS 100

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGED-ICVAAVREVKEETSIDTEFVEVLA 174
           +R +L++       R  G   FP G VD  +  +     RE++EE       VEV  
Sbjct: 42  RRVLLMMM------RFDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTE 92

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 29/63 (46%)

Query: 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172
             + + + + +V+Q  +        + FP G V+  E    + +RE+ EET +  +  ++
Sbjct: 13  CLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL 72

Query: 173 LAF 175
           +  
Sbjct: 73  VGI 75

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 99  NTLPANASHRVGVGAFVM---NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAA 155
           N   +N +  +G+   +     G+  +L+++ N     G   W    G V + E +  AA
Sbjct: 1   NYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGE--WSLMGGFVQKDESVDDAA 58

Query: 156 VREVKEETSIDTEFVEV 172
            R + E T ++  ++E 
Sbjct: 59  KRVLAELTGLENVYMEQ 75

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 90  LVYWIPGGANT-LPANASHRVGVG-AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDE 147
              W+ G   T L      R  V  A        VL+   +S      G   FP G +D 
Sbjct: 13  WALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDA 72

Query: 148 GEDICVAAVREVKEETSIDTEFVEVL 173
           GE    AA+RE +EE ++D   V +L
Sbjct: 73  GETPTQAALREAQEEVALDPAAVTLL 98

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170
           +   +      +L+ Q         G+     G V+ GE +  A  REV EE+ I  + +
Sbjct: 6   IIVAIRRDDS-ILLAQHTR---HRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNL 61

Query: 171 EVLA 174
             + 
Sbjct: 62  RYVT 65

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 165
           ++R  V    +     +L+ +   G    +    F  G++D GE +  AA RE+KEE   
Sbjct: 46  TNREAVMIVPIVDDHLILIREYAVGT--ESYELGFSKGLIDPGESVYEAANRELKEEVGF 103

Query: 166 DTE 168
              
Sbjct: 104 GAN 106

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166
           H+  V    +   R + V Q       G    + P G+++ GED   AA RE+ E+T + 
Sbjct: 23  HKPAVAVIALREGRMLFVRQMRPAV--GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80

Query: 167 TEFVEVLAF 175
            +   + ++
Sbjct: 81  GDLTYLFSY 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.72
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.7
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.69
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.68
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.67
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.66
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.65
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.62
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.61
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.61
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.6
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.58
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.57
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.56
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.56
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.55
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.55
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.55
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.55
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.54
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.53
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.53
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.49
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.44
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.36
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.31
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.12
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.11
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.08
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.72

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.72  E-value=1.7e-17  Score=124.71  Aligned_cols=62  Identities=34%  Similarity=0.551  Sum_probs=54.8

Q ss_pred             ceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412          106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      .++.+|+++|+|.+++|||++|...    +|.|.+|||.||+||++++||+||++||||+++....
T Consensus        12 ~yR~~Vg~vI~n~~~~vLL~kR~~~----~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~   73 (165)
T d1jkna_          12 GYRRNVGICLMNNDKKIFAASRLDI----PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI   73 (165)
T ss_dssp             SEEEEEEEEEECTTSCEEEEEESSS----TTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEE
T ss_pred             CccccEEEEEEeCCCEEEEEEEcCC----CCcccCccceEcCCCChhHHHHHHHHHhhcccccccc
Confidence            3567899999999999999999753    4789999999999999999999999999999876543

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=2.1e-17  Score=118.89  Aligned_cols=61  Identities=44%  Similarity=0.726  Sum_probs=54.3

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .++|+++|++.++++|+++++      .|.|.||||++++||++.+||+||++||||+++.....++
T Consensus         2 ~v~agavv~~~~~~vLl~~~~------~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~   62 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLY   62 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECT------TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred             EEEEEEEEEECCCEEEEEEcC------CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEe
Confidence            478999999999999999865      3689999999999999999999999999999987766554

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.69  E-value=5.8e-17  Score=119.99  Aligned_cols=73  Identities=22%  Similarity=0.401  Sum_probs=60.9

Q ss_pred             CCCcceeeEEEEEEEc---CCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Q 030412          102 PANASHRVGVGAFVMN---GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR  176 (177)
Q Consensus       102 p~~~~~~~~v~~~v~~---~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~r  176 (177)
                      ..++...++|+++|+.   .+.+|||++|+.++.  .|.|.||||++++||++++||+||++||||++.....+++..
T Consensus         4 ~~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~--~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~   79 (147)
T d2fb1a2           4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPA--MGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAF   79 (147)
T ss_dssp             TTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSS--TTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEE
T ss_pred             CCCCCcceEEEEEEEEEeCCcCEEEEEEccCCCC--CCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEe
Confidence            3455677888888863   334899999987764  589999999999999999999999999999998888877753

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.68  E-value=9.4e-17  Score=118.84  Aligned_cols=70  Identities=33%  Similarity=0.516  Sum_probs=57.7

Q ss_pred             ceeeEEEEEEEcCCceEEEEEeecCCCC--CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          106 SHRVGVGAFVMNGKREVLVVQENSGRFR--GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      .+..++++++++.++++||++|+..+..  ..|.|.||||++++||++.+||+||++||||+++....+++.
T Consensus        10 ~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~   81 (158)
T d1sjya_          10 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGA   81 (158)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             CceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEE
Confidence            3445777788888999999999764421  357899999999999999999999999999999888777654

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=8.3e-17  Score=119.62  Aligned_cols=60  Identities=23%  Similarity=0.307  Sum_probs=53.7

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      .++|+++|.+.+++|||++|+..+.  .|.|.+|||++++||++.+||+||++||||+++..
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~~~--~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~   77 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNRPA--QGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPI   77 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSSS--TTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCG
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCCCC--CCcEecccccccCCCcHHHHHHHHHHHHhCceEee
Confidence            5688888899999999999987663  58999999999999999999999999999998653

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.66  E-value=1.2e-16  Score=116.68  Aligned_cols=66  Identities=27%  Similarity=0.245  Sum_probs=54.9

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR  176 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~r  176 (177)
                      .++|++++ ..++++||++|...+.  .+.|.||||++++||++.+||+||++||||+++....++++.
T Consensus         3 ~v~va~ii-~~~~k~Llv~r~~~~~--~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~   68 (146)
T d2b0va1           3 NVTVAAVI-EQDDKYLLVEEIPRGT--AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIY   68 (146)
T ss_dssp             EEEEEEEC-EETTEEEEEEECSSSS--CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             eEEEEEEE-EeCCEEEEEEEecCCC--CCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEE
Confidence            35566554 4568999999987763  589999999999999999999999999999998877766653

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.65  E-value=3.3e-16  Score=121.67  Aligned_cols=73  Identities=26%  Similarity=0.444  Sum_probs=59.5

Q ss_pred             CCCCCCCcceeeEEEEEEE--cCC---ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412           98 ANTLPANASHRVGVGAFVM--NGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV  172 (177)
Q Consensus        98 ~~~~p~~~~~~~~v~~~v~--~~~---~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  172 (177)
                      ...++.|+++.++|+++|+  +.+   .+|||++|+..|.  .|.|.||||++++||++.+||+||++||||+.+....+
T Consensus        27 ~~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~--~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l  104 (202)
T d2fmla2          27 QQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPF--RNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENI  104 (202)
T ss_dssp             TSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSS--TTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred             cccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCC--CCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeeccee
Confidence            3456778888888887775  332   3799999987764  58999999999999999999999999999998765443

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.8e-16  Score=116.15  Aligned_cols=64  Identities=28%  Similarity=0.387  Sum_probs=52.5

Q ss_pred             eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ++.+.+ ++..+++|||++|++++  +.|.|.+|||++++||++.+||+||++||||+++....+++
T Consensus         5 r~~~~v-~i~~~~~vLL~~r~~~~--~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~   68 (156)
T d1irya_           5 RLYTLV-LVLQPQRVLLGMKKRGF--GAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG   68 (156)
T ss_dssp             EEEEEE-CEECSSEEEEEEESSSS--SBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEE
T ss_pred             EEEEEE-EEEECCEEEEEEecCCC--CCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEE
Confidence            444444 44567899999998765  36899999999999999999999999999999987666554

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=5.2e-16  Score=112.38  Aligned_cols=62  Identities=24%  Similarity=0.354  Sum_probs=51.0

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +|.+++ ..++++||+++++.+   .|.|.||||++++|||+++||+||++||||+++.....++.
T Consensus         5 aViv~i-~~~~~vLL~~~~~~~---~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~   66 (131)
T d1vk6a2           5 CIIVAI-RRDDSILLAQHTRHR---NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTS   66 (131)
T ss_dssp             EEEEEE-EETTEEEEEEETTTC---SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE
T ss_pred             EEEEEE-EeCCEEEEEEeccCC---CCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEE
Confidence            454444 445799999887644   47999999999999999999999999999999887776654

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.7e-16  Score=113.97  Aligned_cols=64  Identities=20%  Similarity=0.320  Sum_probs=55.6

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      +++++|+|+++++||+||.......+|.|.+ |||++++||++.+||+||++||||+++.....+
T Consensus         4 a~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~   68 (153)
T d1hzta_           4 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI   68 (153)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE
T ss_pred             EEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccce
Confidence            5778899999999999997655445799988 999999999999999999999999998766544

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.3e-16  Score=114.70  Aligned_cols=61  Identities=23%  Similarity=0.414  Sum_probs=51.9

Q ss_pred             EEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       112 ~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      ++++++.++++||+||...+.+ +|.|.||||++++||++.+||+||++||||+.+....++
T Consensus         8 v~ii~~~~~~vLl~~R~~~~~~-~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~   68 (129)
T d1puna_           8 VGIIRNENNEIFITRRAADAHM-ANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLF   68 (129)
T ss_dssp             EEECBCTTSCEEEBCCCSSCSC-TTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCS
T ss_pred             EEEEEECCCEEEEEEecCCCCC-CCcEECCcceecCCCchhHHHHHHHHHHhCCccccceee
Confidence            3456778899999999776653 699999999999999999999999999999988765443

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.58  E-value=2.1e-15  Score=111.73  Aligned_cols=66  Identities=17%  Similarity=0.280  Sum_probs=50.1

Q ss_pred             EEEEEEEc-CCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Q 030412          110 GVGAFVMN-GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR  176 (177)
Q Consensus       110 ~v~~~v~~-~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~r  176 (177)
                      ...+++++ .++++||++|..... ..+.|.||||++++||++.+||+||++||||+++....++++.
T Consensus        10 ~~~~~i~~~~~~~lLl~~R~~~~~-~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~   76 (155)
T d2b06a1          10 TNICLIEDLETQRVVMQYRAPENN-RWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIK   76 (155)
T ss_dssp             EEEEEEEETTTTEEEEEEEC------CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEE
T ss_pred             EEEEEEEECCCCEEEEEEECCCCC-CCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEE
Confidence            33444555 566888888865443 2377999999999999999999999999999998887776653

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.57  E-value=1.5e-15  Score=112.05  Aligned_cols=56  Identities=30%  Similarity=0.481  Sum_probs=48.0

Q ss_pred             EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      .+++++++.+ +++||+|+..+    .+.|.||||++++||++.+||+||++||||+++..
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~----~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~   60 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKA----SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS   60 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESST----TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred             EEEEEEEECCCCEEEEEEEeCC----CCCEECCcccccCCCCHHHHHHHHHHHHhCCCcee
Confidence            4577888865 68999998642    47899999999999999999999999999998753

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.56  E-value=3.9e-15  Score=114.25  Aligned_cols=65  Identities=31%  Similarity=0.389  Sum_probs=50.1

Q ss_pred             EEEEEEEc-CCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMN-GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~-~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +|.+++++ .+.+|||.+|..+....+|.|.||||++|+||++.+||+||++||||+.....++++
T Consensus        34 aVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg   99 (187)
T d1nqza_          34 AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLG   99 (187)
T ss_dssp             EEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             EEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEee
Confidence            44444443 455899999987754457999999999999999999999999999999988888776

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=6e-15  Score=110.11  Aligned_cols=66  Identities=23%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+|.++++|.++++||.||.......+|.|.+| ||++++||++++||+||++||||++......++
T Consensus        31 ~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~   97 (161)
T d2fkba1          31 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHG   97 (161)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEE
T ss_pred             eEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEE
Confidence            367778889999999999976655557999987 899999999999999999999999876554443

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=3.8e-15  Score=111.40  Aligned_cols=63  Identities=24%  Similarity=0.422  Sum_probs=51.8

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      .+|++++++ ++++||+++.+.+. +...|+||||.+|+||++++||+||++||||+.+....+.
T Consensus        25 ~aV~vl~~~-~~~vlLv~q~R~~~-~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~l~   87 (158)
T d1v8ya_          25 PAVAVIALR-EGRMLFVRQMRPAV-GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLF   87 (158)
T ss_dssp             CEEEEEEEE-TTEEEEEECCBTTT-TBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEE
T ss_pred             CEEEEEEEE-CCEEEEEEeeecCC-CCceEecchhhccccCCHHHHHHHHHHhhcCCcceeeeec
Confidence            467767766 57899998876665 4589999999999999999999999999999987544433

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3.4e-15  Score=115.96  Aligned_cols=67  Identities=27%  Similarity=0.532  Sum_probs=56.8

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeC-CCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVD-EGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve-~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +..+|+++++++++++||+++.+.+. +...|+||+|.+| +||++++||+||++||||+.+.....++
T Consensus        37 ~~~~V~vl~~~~~~~ilLvrq~R~~~-~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~  104 (202)
T d1mqea_          37 HFGAVAIVAMDDNGNIPMVYQYRHTY-GRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLV  104 (202)
T ss_dssp             ECCEEEEEECCTTSEEEEEEEEETTT-TEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEE
T ss_pred             cCCeEEEEEECCCCEEEEEEeccccc-CceEEeccccccccCCCCHHHHHHHHHhhccccccccceEee
Confidence            34577778889899999999877665 3468999999999 7999999999999999999988776665

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.55  E-value=3.9e-15  Score=108.71  Aligned_cols=63  Identities=25%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+.+++++|++.++.+||..++.     .|.|.||||++++||++.+||+||++||||+++....+++
T Consensus        16 ~r~~~~~vi~~~~~~~lll~~~~-----~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~   78 (147)
T d2azwa1          16 TRYAAYIIVSKPENNTMVLVQAP-----NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLG   78 (147)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT-----TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             CCCeEEEEEEECCCCEEEEEEcC-----CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEE
Confidence            34577778888766655555542     3689999999999999999999999999999887666554

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.55  E-value=1.5e-15  Score=110.89  Aligned_cols=54  Identities=30%  Similarity=0.479  Sum_probs=45.2

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV  170 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  170 (177)
                      ++++++. +++|||++|+.     .|.|.||||++++||++.+||+||++||||+++...
T Consensus         4 a~~vi~~-d~kvLl~~r~~-----~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~   57 (152)
T d1k2ea_           4 TSGVLVE-NGKVLLVKHKR-----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI   57 (152)
T ss_dssp             EEEECEE-TTEEEEEECTT-----TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEEcC-----CCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeee
Confidence            4444444 58999999863     478999999999999999999999999999986543

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.54  E-value=8.8e-15  Score=109.21  Aligned_cols=66  Identities=20%  Similarity=0.238  Sum_probs=52.4

Q ss_pred             eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+|+++++|++|++||.+|.......+|.|.+| ||++++||++.+||+||++||||+++.....+.
T Consensus        29 ~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~   95 (162)
T d2o5fa1          29 RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRP   95 (162)
T ss_dssp             EEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEE
T ss_pred             EEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEE
Confidence            467888999999999998865544457999887 999999999999999999999999987766544

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.9e-15  Score=106.20  Aligned_cols=64  Identities=27%  Similarity=0.443  Sum_probs=50.5

Q ss_pred             eeEEEEEEEc--CCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412          108 RVGVGAFVMN--GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF  175 (177)
Q Consensus       108 ~~~v~~~v~~--~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~  175 (177)
                      +..+++++++  .++.+||+++++.    ++.|.||||++++||++.+||+||++||||+.+....+++.
T Consensus        11 r~~a~~vv~~~~~~~~~lL~~~~~~----~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~   76 (135)
T d2fvva1          11 KKRAACLCFRSESEEEVLLVSSSRH----PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGI   76 (135)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSSC----TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             ceEEEEEEEEecCCCEEEEEEEeCC----CCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEE
Confidence            3456666665  4456777776653    47899999999999999999999999999999877766554

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.53  E-value=1.6e-14  Score=103.77  Aligned_cols=61  Identities=38%  Similarity=0.552  Sum_probs=49.1

Q ss_pred             EEEEEEEc---CCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMN---GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~---~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      ++++++++   .+.++||++|...    +|.|.+|||++++||++.+||+||++||||+++.....+.
T Consensus         4 aag~vv~~~~~~~~~~Ll~~r~~~----~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~   67 (137)
T d1ktga_           4 AAGLVIYRKLAGKIEFLLLQASYP----PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHE   67 (137)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESST----TCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             EEEEEEEEEcCCCEEEEEEEEcCC----CCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeee
Confidence            45555653   3447899988653    4799999999999999999999999999999987665543

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.2e-14  Score=109.89  Aligned_cols=63  Identities=24%  Similarity=0.315  Sum_probs=50.6

Q ss_pred             EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +|.++.. .++++||+++.+.+. +...|+||||.+|+||++++||+||++||||+.+.....++
T Consensus        50 ~v~vi~~-~~~~vlLvrq~R~~~-~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~  112 (186)
T d1vhza_          50 AVMIVPI-VDDHLILIREYAVGT-ESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLK  112 (186)
T ss_dssp             EEEEEEE-ETTEEEEEEEEETTT-TEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             EEEEEEc-cCCEEEEEEeeecCC-CceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecc
Confidence            3443333 467888888776665 45789999999999999999999999999999887776665

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-13  Score=100.71  Aligned_cols=61  Identities=30%  Similarity=0.523  Sum_probs=50.0

Q ss_pred             eEEEEEEE---------cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412          109 VGVGAFVM---------NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL  173 (177)
Q Consensus       109 ~~v~~~v~---------~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  173 (177)
                      .++|++++         +.+.++||+|+..+    .+.|.+|||++++||++.+||+||++||||+......++
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~----~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~   78 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASDG----IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTII   78 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESST----TCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEEC
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecCC----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeee
Confidence            34666666         35679999998763    367999999999999999999999999999987665443

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=8.4e-13  Score=102.78  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             eeeEEEEEEEcC-CceEEEEEeecCCCC----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          107 HRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       107 ~~~~v~~~v~~~-~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      +..+|++++++. +++++|+++.+.+..    +...|++|+|.+|+||++++||+|||.||||+++..+..++
T Consensus        56 ~~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~  128 (209)
T d1g0sa_          56 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVL  128 (209)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_pred             cCCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeecc
Confidence            345677777765 467888887665531    12379999999999999999999999999999998776654

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.31  E-value=9e-13  Score=94.45  Aligned_cols=59  Identities=20%  Similarity=0.366  Sum_probs=45.6

Q ss_pred             EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412          111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  171 (177)
                      +++++.+.++++|+.||+....++ |+|+||||.++++|+ .+++.||++||+|+++....
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~~~~-GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~   65 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTGLLA-NLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTE   65 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSSTTT-TCEECCEEECTTTCC-HHHHHHTTC----CEEEECS
T ss_pred             EEEEEEECCCEEEEEECCCCCCCC-CceecccccccCCCC-HHHHHHHhhhhcceEEEecc
Confidence            445667889999999998877764 999999999997777 78999999999999876543

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=5.7e-11  Score=90.77  Aligned_cols=65  Identities=20%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             eEEEEEEEc-CCceEEEEEeecCCC-----CCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412          109 VGVGAFVMN-GKREVLVVQENSGRF-----RGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA  174 (177)
Q Consensus       109 ~~v~~~v~~-~~~~vLl~~r~~~~~-----~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~  174 (177)
                      .+|++++++ .+++++|+++.+.+.     ...-.|++|||.+| ||++++||+||+.||||+.+..+..++
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg  114 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLF  114 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEE
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcc
Confidence            367777776 457888887765442     12357889999998 566899999999999999988777665

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.11  E-value=5.6e-11  Score=91.42  Aligned_cols=47  Identities=30%  Similarity=0.377  Sum_probs=38.5

Q ss_pred             CceEEEEEeecCCCCCCCeEEeceEEeCCCCC-HHHHHHHHHHHHhCCccccee
Q 030412          119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGED-ICVAAVREVKEETSIDTEFVE  171 (177)
Q Consensus       119 ~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~-~~~aa~REl~EEtGl~~~~~~  171 (177)
                      +..+|+++|.      .|.|.||||++++||+ +++||.||+.||||+.+....
T Consensus        42 ~~~vl~~~r~------~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~   89 (196)
T d1u20a1          42 RRVLLMMMRF------DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE   89 (196)
T ss_dssp             CEEEEEEEET------TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCC
T ss_pred             CcEEEEEEec------CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEE
Confidence            4567776653      4799999999999996 789999999999999876543

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.8e-11  Score=96.97  Aligned_cols=44  Identities=30%  Similarity=0.538  Sum_probs=39.6

Q ss_pred             eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412          121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF  169 (177)
Q Consensus       121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~  169 (177)
                      ++|+++|+.     .|.|.||||+||+||++.+||+||+.||||+.+..
T Consensus       140 qvLlIkR~d-----~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~  183 (292)
T d1q33a_         140 QFVAIKRKD-----CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQK  183 (292)
T ss_dssp             EEEEEECTT-----TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGS
T ss_pred             EEEEEEecC-----CCcEeCCcccCCCCCCHHHHHHHHHHHHhCccccc
Confidence            689999874     47899999999999999999999999999997654

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.5e-08  Score=72.70  Aligned_cols=56  Identities=16%  Similarity=0.271  Sum_probs=43.5

Q ss_pred             eEEEEEEEc---CCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCC
Q 030412          109 VGVGAFVMN---GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI  165 (177)
Q Consensus       109 ~~v~~~v~~---~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl  165 (177)
                      ..+.+++.+   .+++|||.||+..+.++ |+|+||+|.++.+|+..++|.||..+|.+.
T Consensus        13 ~~~~~vv~~~~~~~~~iLl~kR~~~g~l~-GlWefP~~~~~~~e~~~~~~~~~~~~e~~~   71 (142)
T d1x51a1          13 SSATCVLEQPGALGAQILLVQRPNSGLLA-GLWEFPSVTWEPSEQLQRKALLQELQRWAG   71 (142)
T ss_dssp             EEEEEEEEEECSSSEEEEEEECCCCSTTC-SCEECCEEECCSSHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEEEecCCCCCEEEEEECCCCCCCC-cceeeeEeeccCCcchhHHHHHHHHHHhcc
Confidence            344444544   36799999998887765 999999999999999998887776655553