Citrus Sinensis ID: 030453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MKNMILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEALYKRKYGNDQYDNLRDVM
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccEEEEEccccEEEEEEccEEEEEEEcEEEEccEEEEEEEcccccccccEEEEEEEEEEEEEEEEEEcccccEEEEEEcEEEEEccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccEEEEEccccEEEEEEcccEEEEEEcEEEEccEEEEEEEcccEccEcEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEccccHHHccccccccccccccccccccccHHHHHHHHHccccccccHcccc
Coil and Loop (DISEMBL)
MKNMILPVLLLSFLTLSISNVNSKQESIYEILKEhglpmgllpkgidefsidgtgNFEVFLEQACNAKfeselhydrnvsgtlsygqmgslsgisaqELFLwfpvkgirvdipssgliyfdvGVVRKQFslslfetprdcmavrsynddvlngeLSAEALYKRKYGNDQYDNLRDVM
Flexible Loop (DISEMBL)
MKNMILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEalykrkygndqydnlrdvm
Low Complexity Region (SEG)
MKNMIlpvlllsfltlsisNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEALYKRKYGNDQYDNLRDVM
Disordered region (IsUnstruct)
***MILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEALYKRKY************
Disordered Region (DISOPRED)
**NMILPVLLLSFLTL*************EILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCM******************************NLR**M
Disordered Region (DISEMBL)
MKNMILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEALYKRKYGNDQYDNLRDVM
Disordered Region (DISPRO)
*KNMILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEAL*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKNMILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEALYKRKYGNDQYDNLRDVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9M015	170	Uncharacterized protein A	no	no	0.661	0.688	0.264	1e-05

>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 25  QESIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFE--SELHYDRNVSG 81
           Q+ + E+LKE+ LP+G+ P     +  D  T    V +   C   ++  S L +   V+G
Sbjct: 51  QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTG 110

Query: 82  TLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCM 141
            L  G++  + GI  + + +W  V  I  D   +  +YF  G ++K  S   +E  R+ +
Sbjct: 111 HLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYEVQRNGL 165

Query: 142 AVRSY 146
            V  +
Sbjct: 166 RVDKF 170

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
224129380	165	predicted protein [Populus trichocarpa]	0.915	0.981	0.689	3e-58
224069670	181	predicted protein [Populus trichocarpa]	0.881	0.861	0.686	3e-57
255572654	186	conserved hypothetical protein [Ricinus	0.813	0.774	0.737	2e-56
225470256	178	PREDICTED: uncharacterized protein LOC10	0.836	0.831	0.713	5e-53
147798671	228	hypothetical protein VITISV_016695 [Viti	0.661	0.513	0.829	9e-52
297833536	243	hypothetical protein ARALYDRAFT_478064 [	0.796	0.580	0.647	3e-48
62867582	220	hypothetical protein [Nicotiana tabacum]	0.768	0.618	0.666	4e-48
6041854	160	unknown protein [Arabidopsis thaliana]	0.796	0.881	0.635	6e-48
18397959	169	uncharacterized protein [Arabidopsis tha	0.796	0.834	0.635	7e-48
297833538	168	hypothetical protein ARALYDRAFT_478066 [	0.728	0.767	0.692	4e-47

>gi|224129380|ref|XP_002320572.1| predicted protein [Populus trichocarpa] gi|222861345|gb|EEE98887.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/164 (68%), Positives = 135/164 (82%), Gaps = 2/164 (1%)

Query: 1   MKNMILPVLLLSFLTLSISNVNS-KQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEV 59
           MK M+  +  LSFL +S+  V S K +SIY++LK HGLPMGLLP G+ EF+ID TG FEV
Sbjct: 1   MKKMLRLICFLSFLLISVPTVCSDKNQSIYDVLKAHGLPMGLLPTGVKEFNIDETGRFEV 60

Query: 60  FLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIY 119
            L+QACNAKFESELHYD NV+G+LS+GQ+G+LSGISAQELFLWFPVKGIRVD+PSSGLIY
Sbjct: 61  HLDQACNAKFESELHYDMNVTGSLSFGQIGALSGISAQELFLWFPVKGIRVDVPSSGLIY 120

Query: 120 FDVGVVRKQFSLSLFETPRDCMAVRSYN-DDVLNGELSAEALYK 162
           FDVGVV KQFSLSLFE PRDC+AVR    + V +G+  A+A+ K
Sbjct: 121 FDVGVVFKQFSLSLFEMPRDCVAVRDEEIEAVRHGKFIADAVAK 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069670|ref|XP_002303019.1| predicted protein [Populus trichocarpa] gi|222844745|gb|EEE82292.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 114/166 (68%), Positives = 135/166 (81%), Gaps = 10/166 (6%)

Query: 4   MILPVLLLSFLTLSISNVNSKQE-SIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLE 62
           M+  +  LSFL +SI+ V S QE SIY++LK HGLP+GLLPKG+ EF ID TG FEV L+
Sbjct: 1   MLRLICYLSFLVISITTVYSDQEKSIYDVLKAHGLPIGLLPKGVKEFKIDETGRFEVHLD 60

Query: 63  QACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDV 122
           QACNAKFESELHYD NV+G+LSYGQ+G+LSGIS+QELFLWFPVKGIRVD+PSSGLIYFDV
Sbjct: 61  QACNAKFESELHYDMNVTGSLSYGQIGALSGISSQELFLWFPVKGIRVDVPSSGLIYFDV 120

Query: 123 GVVRKQFSLSLFETPRDCMAVRSYNDDVLNGELSAEALYKRKYGND 168
           GVV KQFSLSLFE PRDC+AVR  N++++       AL  RK+  D
Sbjct: 121 GVVFKQFSLSLFEMPRDCVAVR--NEEIV-------ALRHRKFIAD 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572654|ref|XP_002527260.1| conserved hypothetical protein [Ricinus communis] gi|223533353|gb|EEF35104.1| conserved hypothetical protein [Ricinus communis]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 125/145 (86%), Gaps = 1/145 (0%)

Query: 27  SIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYG 86
           S Y++LK+HGLPMGLLPKG+ +F I+ TG FEV L+QACNAKFESELHYD NVSGTLSYG
Sbjct: 30  SFYDVLKDHGLPMGLLPKGVKDFKINETGAFEVHLDQACNAKFESELHYDMNVSGTLSYG 89

Query: 87  QMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSY 146
           Q+G+LSGISAQELFLWFPVKGIRVD+PSSGLIYFDVGVV KQFSLSLFETPRDC AVR  
Sbjct: 90  QIGALSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVSKQFSLSLFETPRDCTAVRDG 149

Query: 147 N-DDVLNGELSAEALYKRKYGNDQY 170
             +D+ +G+L A+A+ K + G  +Y
Sbjct: 150 QFEDIQHGKLIADAVSKSQNGELRY 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470256|ref|XP_002264070.1| PREDICTED: uncharacterized protein LOC100241410 [Vitis vinifera]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/150 (71%), Positives = 121/150 (80%), Gaps = 2/150 (1%)

Query: 28  IYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQ 87
           IYE+L+ HGLPMGLLPKG+ +F ID  G FEV+L+QACNAKFESELHYDRNVSG+LSYGQ
Sbjct: 31  IYEVLRSHGLPMGLLPKGVTDFIIDDNGRFEVYLDQACNAKFESELHYDRNVSGSLSYGQ 90

Query: 88  MGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRSYN 147
           +G LSGISAQELFLWFPVKGIRVD+PSSGLIYFDVGVV KQFSLSLFETP +C AVR   
Sbjct: 91  IGELSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVFKQFSLSLFETPPNCKAVR--G 148

Query: 148 DDVLNGELSAEALYKRKYGNDQYDNLRDVM 177
           D+       A    K +Y  DQ D +RDV+
Sbjct: 149 DERPEESNFANLSGKLQYRFDQEDLVRDVL 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798671|emb|CAN74376.1| hypothetical protein VITISV_016695 [Vitis vinifera]

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 107/117 (91%)

Query: 28  IYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYGQ 87
           IYE+L+ HGLPMGLLPKG+ +F ID  G FEV+L+QACNAKFESELHYDRNVSG+LSYGQ
Sbjct: 31  IYEVLRSHGLPMGLLPKGVTDFIIDDNGRFEVYLDQACNAKFESELHYDRNVSGSLSYGQ 90

Query: 88  MGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVR 144
           +G LSGISAQELFLWFPVKGIRVD+PSSGLIYFDVGVV KQFSLSLFETP +C AVR
Sbjct: 91  IGELSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVFKQFSLSLFETPPNCKAVR 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833536|ref|XP_002884650.1| hypothetical protein ARALYDRAFT_478064 [Arabidopsis lyrata subsp. lyrata] gi|297330490|gb|EFH60909.1| hypothetical protein ARALYDRAFT_478064 [Arabidopsis lyrata subsp. lyrata]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 5   ILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDG-TGNFEVFLEQ 63
           I  + LL F+  +  +++++ ESI EIL  +GLP+G+ PKG+  FS++G TG F V+L Q
Sbjct: 4   IAQIALLCFVLAARISISAENESIDEILLANGLPLGIFPKGVKGFSVNGETGRFSVYLNQ 63

Query: 64  ACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVG 123
           +C AK+E+ELHYD  VSGT+ Y Q+G LSGISAQELFLWFPVKGIRVD+PSSGLI+FDVG
Sbjct: 64  SCQAKYETELHYDEIVSGTIGYAQIGDLSGISAQELFLWFPVKGIRVDVPSSGLIFFDVG 123

Query: 124 VVRKQFSLSLFETPRDCMAVRS 145
           V+RKQ+SLSLFETPRDC+AVRS
Sbjct: 124 VLRKQYSLSLFETPRDCVAVRS 145

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62867582|emb|CAI84656.1| hypothetical protein [Nicotiana tabacum]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/141 (66%), Positives = 111/141 (78%), Gaps = 5/141 (3%)

Query: 4   MILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQ 63
           M L +L   F  LS     + + SIYE+L+ HGLP GLLPKG+  F++D +G F V L+Q
Sbjct: 1   MFLLLLCSIFAVLS-----TAESSIYEVLESHGLPRGLLPKGVKNFTLDNSGKFVVHLDQ 55

Query: 64  ACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVG 123
           ACNAKFE+E HYDRNVSGT+SYGQ+ +LSGI AQ+LFLWFPVK IRVDIPSSGLIYF+VG
Sbjct: 56  ACNAKFENEFHYDRNVSGTISYGQIHALSGIEAQDLFLWFPVKDIRVDIPSSGLIYFNVG 115

Query: 124 VVRKQFSLSLFETPRDCMAVR 144
           VV KQFSLS FETPRDC  V+
Sbjct: 116 VVSKQFSLSSFETPRDCTVVQ 136

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6041854|gb|AAF02163.1|AC009853_23 unknown protein [Arabidopsis thaliana]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 116/148 (78%), Gaps = 7/148 (4%)

Query: 4   MILPVLLLSFLTL------SISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSID-GTGN 56
           M+L ++ ++FL L      SIS   S+ E+IYEIL  +GLP G+ PKG+ EF+ D  TG 
Sbjct: 1   MMLRIVQIAFLCLVLVAGISISTAISETETIYEILLANGLPSGIFPKGVREFTFDVETGR 60

Query: 57  FEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSG 116
           F V+L QAC AK+E+E+HYD N++GT+   Q+  LSGISAQELFLWFPVKGIRVD+PSSG
Sbjct: 61  FSVYLNQACEAKYETEIHYDANITGTIGSAQISDLSGISAQELFLWFPVKGIRVDVPSSG 120

Query: 117 LIYFDVGVVRKQFSLSLFETPRDCMAVR 144
           LIYFDVGVVRKQ+SLSLFETPRDC+ VR
Sbjct: 121 LIYFDVGVVRKQYSLSLFETPRDCVPVR 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397959|ref|NP_566308.1| uncharacterized protein [Arabidopsis thaliana] gi|15081622|gb|AAK82466.1| AT3g07470/F21O3_18 [Arabidopsis thaliana] gi|27363316|gb|AAO11577.1| At3g07470/F21O3_18 [Arabidopsis thaliana] gi|332641026|gb|AEE74547.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 116/148 (78%), Gaps = 7/148 (4%)

Query: 4   MILPVLLLSFLTL------SISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSID-GTGN 56
           M+L ++ ++FL L      SIS   S+ E+IYEIL  +GLP G+ PKG+ EF+ D  TG 
Sbjct: 1   MMLRIVQIAFLCLVLVAGISISTAISETETIYEILLANGLPSGIFPKGVREFTFDVETGR 60

Query: 57  FEVFLEQACNAKFESELHYDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSG 116
           F V+L QAC AK+E+E+HYD N++GT+   Q+  LSGISAQELFLWFPVKGIRVD+PSSG
Sbjct: 61  FSVYLNQACEAKYETEIHYDANITGTIGSAQISDLSGISAQELFLWFPVKGIRVDVPSSG 120

Query: 117 LIYFDVGVVRKQFSLSLFETPRDCMAVR 144
           LIYFDVGVVRKQ+SLSLFETPRDC+ VR
Sbjct: 121 LIYFDVGVVRKQYSLSLFETPRDCVPVR 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833538|ref|XP_002884651.1| hypothetical protein ARALYDRAFT_478066 [Arabidopsis lyrata subsp. lyrata] gi|297330491|gb|EFH60910.1| hypothetical protein ARALYDRAFT_478066 [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 16  LSISNVNSKQESIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFESELH 74
           +SIS+  S+ ESIYEIL  +GLP G+ PKG+ EF+ D  TG F V+L Q+C AK+E+ELH
Sbjct: 18  ISISSAISETESIYEILTANGLPSGIFPKGVREFNFDVETGRFSVYLNQSCEAKYETELH 77

Query: 75  YDRNVSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLF 134
           YD N++GT+   Q+  LSGISAQELFLWFPVKGIRVD+PSSGLIYFDVGVVRKQ+SLSLF
Sbjct: 78  YDANITGTIGSSQISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLF 137

Query: 135 ETPRDCMAVR 144
           ETPRDC+ VR
Sbjct: 138 ETPRDCVPVR 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2079601	169	AT3G07470 [Arabidopsis thalian	0.689	0.721	0.699	6.4e-44
TAIR|locus:2079701	271	AT3G07460 "AT3G07460" [Arabido	0.700	0.457	0.68	4e-42
TAIR|locus:2171297	195	AT5G16380 "AT5G16380" [Arabido	0.672	0.610	0.6	2.2e-34
TAIR|locus:505006197	156	AT1G61667 "AT1G61667" [Arabido	0.666	0.756	0.495	2.8e-27
TAIR|locus:2172094	161	AT5G54530 "AT5G54530" [Arabido	0.644	0.708	0.482	1.5e-26
TAIR|locus:2147610	181	AT5G19860 "AT5G19860" [Arabido	0.644	0.629	0.385	2.1e-22
TAIR|locus:505006187	175	AT1G55265 [Arabidopsis thalian	0.644	0.651	0.387	1.5e-19
TAIR|locus:2133254	154	AT4G02360 "AT4G02360" [Arabido	0.661	0.759	0.303	4.9e-14
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.604	0.644	0.289	1.3e-11
TAIR|locus:2133264	167	AT4G02370 "AT4G02370" [Arabido	0.638	0.676	0.291	1.7e-11

TAIR|locus:2079601 AT3G07470 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 86/123 (69%), Positives = 103/123 (83%)

Query:    23 SKQESIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFESELHYDRNVSG 81
             S+ E+IYEIL  +GLP G+ PKG+ EF+ D  TG F V+L QAC AK+E+E+HYD N++G
Sbjct:    26 SETETIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYETEIHYDANITG 85

Query:    82 TLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCM 141
             T+   Q+  LSGISAQELFLWFPVKGIRVD+PSSGLIYFDVGVVRKQ+SLSLFETPRDC+
Sbjct:    86 TIGSAQISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLFETPRDCV 145

Query:   142 AVR 144
              VR
Sbjct:   146 PVR 148

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2079701 AT3G07460 "AT3G07460" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 85/125 (68%), Positives = 104/125 (83%)

Query:    21 VNSKQESIYEILKEHGLPMGLLPKGIDEFSIDG-TGNFEVFLEQACNAKFESELHYDRNV 79
             V ++ ESI EIL  +GLP+GL PKG+  F+++G TG F V+L Q+C AK+E+ELHYD  V
Sbjct:    23 VIAENESIDEILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYETELHYDEIV 82

Query:    80 SGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRD 139
             SGT+ Y Q+  LSGISAQELFLW  VKGIRVD+PSSGLI+FDVGV+RKQ+SLSLFETPRD
Sbjct:    83 SGTIGYAQIRDLSGISAQELFLWLQVKGIRVDVPSSGLIFFDVGVLRKQYSLSLFETPRD 142

Query:   140 CMAVR 144
             C+AVR
Sbjct:   143 CVAVR 147

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2171297 AT5G16380 "AT5G16380" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 72/120 (60%), Positives = 90/120 (75%)

Query:    27 SIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFESELHYDRNVSGTLSY 85
             S Y+ L+E  LP G++PKG+  FSID  TG F V L   C+AKFE++ H+D N+SG LS 
Sbjct:    30 SFYDYLRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFENQFHFDYNISGVLSD 89

Query:    86 GQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVRS 145
             G++G+LSG++ +ELFLWF VKGI VD  SSGLI+FDVGV  KQ SLSLFE+PRDC A  S
Sbjct:    90 GRIGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQLSLSLFESPRDCTAAES 149

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006197 AT1G61667 "AT1G61667" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 59/119 (49%), Positives = 79/119 (66%)

Query:    23 SKQESIYEILKEHGLPMGLLPKGIDEFSIDG-TGNFEVFLEQACNAKFESELHYDRNVSG 81
             S Q SI  +L+  GLP GL P  ++ +S+D  TG  EV L+  C A+FE+ +++DR +  
Sbjct:    17 SSQSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRVIKA 76

Query:    82 TLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDC 140
              LSYG +  L G++ +ELFLW PVKGI V+ PSSGL+ FD+GV  KQ S SLFE P  C
Sbjct:    77 NLSYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPPVC 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2172094 AT5G54530 "AT5G54530" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 55/114 (48%), Positives = 77/114 (67%)

Query:    27 SIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYG 86
             +++++L+  GLP GLLP+ +D + +   G  EVFL   C AKFE+ +H++  V G LSYG
Sbjct:    28 TVHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETNVHFEAVVRGNLSYG 87

Query:    87 QMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDC 140
              +  + G+S +ELFLW  VK I V+ P+SG+I FD+GV  KQ SLSLFE P  C
Sbjct:    88 SLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPPKC 141

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2147610 AT5G19860 "AT5G19860" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 44/114 (38%), Positives = 70/114 (61%)

Query:    27 SIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESELHYDRNVSGTLSYG 86
             ++YE+L ++GLP GLLP  + +F++   G F V L  +C  +F+  +HYD+ +SG + YG
Sbjct:    35 TVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNSCEIEFDYLVHYDKTISGRIGYG 94

Query:    87 QMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDC 140
              +  L GI  ++ F+W  V  I+VD+P S  IYF VG + K+  +  F+T   C
Sbjct:    95 SITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSC 148

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006187 AT1G55265 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/116 (38%), Positives = 66/116 (56%)

Query:    26 ESIYEILKEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQACNAKFESEL-HYDRNVSGTLS 84
             + I+++L  +G P GLLP  +  ++I   G+F V L  +C  KF  +L  Y +N++G LS
Sbjct:    52 DDIHDLLPRYGFPKGLLPNNVKSYTISDDGDFTVDLISSCYVKFSDQLVFYGKNIAGKLS 111

Query:    85 YGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDC 140
             YG +  + GI A+E FLW P+  +  D PSS  + F VG V K    S+FE    C
Sbjct:   112 YGSVKDVRGIQAKEAFLWLPITAMESD-PSSATVVFSVGFVSKTLPASMFENVPSC 166

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2133254 AT4G02360 "AT4G02360" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 37/122 (30%), Positives = 66/122 (54%)

Query:    21 VNSKQESIYEILKEHGLPMGLLPKGIDEFSIDG-TGNFEVFLEQACNAKFES-ELHYDRN 78
             V+ ++ + Y+ +K + LP G+LPKG+ ++ ++  TGNF+V+    C    +S +L Y   
Sbjct:    22 VSGQKPTAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTIQSYQLKYKST 81

Query:    79 VSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPR 138
             +SG +S G + +L G+S + LF W  +  + +D      + F VG+    F  + FE   
Sbjct:    82 ISGVISPGHVKNLKGVSVKVLFFWVNIAEVSLD---GADLDFSVGIASASFPAANFEESP 138

Query:   139 DC 140
              C
Sbjct:   139 QC 140

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/114 (28%), Positives = 62/114 (54%)

Query:    29 YEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFES--ELHYDRNVSGTLSY 85
             Y +L+ +  P+G+LPKG+  + +D  TG F  +  ++C+   +   +L Y   +SG +S 
Sbjct:    33 YTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDYKSTISGYISE 92

Query:    86 GQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLF-ETPR 138
              ++  L+G+  + LFLW  +  + V I +   + F VG+    F +  F E+P+
Sbjct:    93 NKITKLTGVKVKVLFLWLNI--VEV-IRNGDELEFSVGITSANFEIDEFYESPQ 143

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2133264 AT4G02370 "AT4G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 35/120 (29%), Positives = 64/120 (53%)

Query:    23 SKQESIYEILKEHGLPMGLLPKGIDEFSIDGT-GNFEVFLEQAC--NAKFESELHYDRNV 79
             S   + Y +L+ +  P+G+LPKG+  + +D T G F  +   +C  N     +L+Y   +
Sbjct:    27 SDTPTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNLVGSYQLNYKSTI 86

Query:    80 SGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLF-ETPR 138
             SG +S  ++  L+G+  + LFLW  +  + V I +   + F VG+    F++  F E+P+
Sbjct:    87 SGYISENKLKKLTGVKVKVLFLWLNI--VEV-IRNGDEMEFSVGITSANFAIQEFLESPQ 143

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00141254 hypothetical protein (165 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	5e-42

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score =  136 bits (344), Expect = 5e-42
 Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 4/110 (3%)

Query: 27  SIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFES-ELHYDRNVSGTLS 84
           + YE+L+E+GLP+GLLPKG+ E+++D  TG F V+L   C   FE   + YD  V+G +S
Sbjct: 1   TAYELLEEYGLPVGLLPKGVTEYTLDETTGKFWVYLNGTCEFTFEGYSVRYDPTVTGYIS 60

Query: 85  YGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLF 134
            G++  L G+  + LFLW P+  I VD      + F VGV+ K F    F
Sbjct: 61  KGRLSGLEGVKVKVLFLWVPIVEISVD--DGDKLTFSVGVLSKSFPADAF 108

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	100.0

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=2.2e-44  Score=275.72  Aligned_cols=108  Identities=42%  Similarity=0.823  Sum_probs=81.9

Q ss_pred             cHHHHHHhcCCCCCCCCCCceeEEecCc-ceEEEEEcCeEEEEEe-ceEEeeeeeeeeecccccccccceeEEEEeecce
Q 030453           27 SIYEILKEHGLPMGLLPKGIDEFSIDGT-GNFEVFLEQACNAKFE-SELHYDRNVSGTLSYGQMGSLSGISAQELFLWFP  104 (177)
Q Consensus        27 tayelL~~~GLP~GLLP~~V~~y~l~~t-G~f~V~l~~~C~~~f~-~~v~Y~~~ItG~i~~G~I~~L~GVk~K~lflWv~  104 (177)
                      ||||+|++||||+||||++|++|++|++ |+|||+|+++|+|+|+ ++|+|+++|||+|++|+|++|+||++|++|+|++
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~~   80 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKELFLWVP   80 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEES
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEEEEEEee
Confidence            7999999999999999999999999986 9999999999999997 4999999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCCeEEEEEceeeeeeccccccCC
Q 030453          105 VKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETP  137 (177)
Q Consensus       105 V~eI~vd~~~~g~I~F~vg~isksFP~s~F~~~  137 (177)
                      |+||.+   ++++|+|++|.++++||+++|++|
T Consensus        81 v~~i~~---~~~~i~F~~g~~s~sfp~~~F~~s  110 (110)
T PF04398_consen   81 VTEISV---DGDKIYFKVGGISKSFPVSAFEES  110 (110)
T ss_dssp             ---BEE----SSSEE-TTSSSS----TTTTSS-
T ss_pred             EEEEEE---cCCEEEEEEeeEeccCCHHHhccC
Confidence            999999   489999999999999999999985

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
1ydu_A	170	Solution Nmr Structure Of At5g01610, An Arabidopsis		5e-06

>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis Thaliana Protein Containing Duf538 Domain Length = 170

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 25  QESIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFE--SELHYDRNVSG 81
           Q+ + E+LKE+ LP+G+ P     +  D  T    V +   C   ++  S L +   V+G
Sbjct: 51  QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTG 110
Query: 82  TLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCM 141
            L  G++  + GI  + + +W  V  I  D   +  +YF  G ++K  S   +   R+ +
Sbjct: 111 HLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYGVQRNGL 165
Query: 142 AVRSY 146
            V  +
Sbjct: 166 RVDKF 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	1e-42

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score =  139 bits (351), Expect = 1e-42
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 22  NSKQESIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFE--SELHYDRN 78
              Q+ + E+LKE+ LP+G+ P     +  D  T    V +   C   ++  S L +   
Sbjct: 48  GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTT 107

Query: 79  VSGTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPR 138
           V+G L  G++  + GI  + + +W  V  I  D   +  +YF  G+  K  S   +   R
Sbjct: 108 VTGHLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAGMK-KSRSRDAYGVQR 162

Query: 139 DCMAVRSY 146
           + + V  +
Sbjct: 163 NGLRVDKF 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	100.0

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=100.00  E-value=1e-42  Score=283.12  Aligned_cols=118  Identities=26%  Similarity=0.582  Sum_probs=111.2

Q ss_pred             CCccccHHHHHHhcCCCCCCCCCCceeEEecC-cceEEEEEcCeEEEEEe--ceEEeeeeeeeeecccccccccceeEEE
Q 030453           22 NSKQESIYEILKEHGLPMGLLPKGIDEFSIDG-TGNFEVFLEQACNAKFE--SELHYDRNVSGTLSYGQMGSLSGISAQE   98 (177)
Q Consensus        22 ~~~~~tayelL~~~GLP~GLLP~~V~~y~l~~-tG~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~G~I~~L~GVk~K~   98 (177)
                      +.+++|+||+|++||||+||||++|++|++|+ ||+|||+|+++|+|+|+  ++|+|+++|||+|++|+|++|+||++|+
T Consensus        48 g~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~  127 (170)
T 1ydu_A           48 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKV  127 (170)
T ss_dssp             TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEES
T ss_pred             ccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEE
Confidence            34688999999999999999999999999997 59999999999999995  6999999999999999999999999999


Q ss_pred             EeecceeeEEEEcCCCCCeEEEEEceeeeeeccccccCCCcccccc
Q 030453           99 LFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVR  144 (177)
Q Consensus        99 lflWv~V~eI~vd~~~~g~I~F~vg~isksFP~s~F~~~p~C~~~~  144 (177)
                      | +|++|++|.|   ++++|+|++|+ +++||+++|+.+|+|....
T Consensus       128 L-lWv~V~eI~v---~~~kI~F~vGi-~ksfp~saFe~~~~c~~~~  168 (170)
T 1ydu_A          128 M-IWVKVTSIST---DASKVYFTAGM-KKSRSRDAYGVQRNGLRVD  168 (170)
T ss_dssp             S-SEESCCCBEE---CSSSEECTTSS-SSCCCHHHHSSCCCCCCTT
T ss_pred             E-EEeeEEEEEE---eCCEEEEEEcC-cccccHHHhcCCcCCcccC
Confidence            9 9999999999   47899999995 8999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	1e-42

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  138 bits (349), Expect = 1e-42
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 24  KQESIYEILKEHGLPMGLLPKGIDEFSID-GTGNFEVFLEQACNAKFE--SELHYDRNVS 80
            Q+ + E+LKE+ LP+G+ P     +  D  T    V +   C   ++  S L +   V+
Sbjct: 49  MQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVT 108

Query: 81  GTLSYGQMGSLSGISAQELFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDC 140
           G L  G++  + GI  + + +W  V  I  D   +  +YF  G ++K  S   +   R+ 
Sbjct: 109 GHLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYGVQRNG 163

Query: 141 MAVRSY 146
           + V  +
Sbjct: 164 LRVDKF 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	100.0

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-41  Score=274.32  Aligned_cols=114  Identities=26%  Similarity=0.604  Sum_probs=106.8

Q ss_pred             ccccHHHHHHhcCCCCCCCCCCceeEEecCc-ceEEEEEcCeEEEEEe--ceEEeeeeeeeeecccccccccceeEEEEe
Q 030453           24 KQESIYEILKEHGLPMGLLPKGIDEFSIDGT-GNFEVFLEQACNAKFE--SELHYDRNVSGTLSYGQMGSLSGISAQELF  100 (177)
Q Consensus        24 ~~~tayelL~~~GLP~GLLP~~V~~y~l~~t-G~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~G~I~~L~GVk~K~lf  100 (177)
                      .+++++|||++||||+||||++|++|++|++ |+|||+|+++|+|+|+  |+|+|+++|||+|++|+|++|+||++| +|
T Consensus        49 ~~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~TG~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvK-lf  127 (169)
T d1ydua1          49 MQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-VM  127 (169)
T ss_dssp             TTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE-SS
T ss_pred             CCCCHHHHHHhcCCCCccCCCCceEEEEECCCcEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEE-EE
Confidence            4789999999999999999999999999985 9999999999999995  799999999999999999999999999 78


Q ss_pred             ecceeeEEEEcCCCCCeEEEEEceeeeeeccccccCCCcccc
Q 030453          101 LWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMA  142 (177)
Q Consensus       101 lWv~V~eI~vd~~~~g~I~F~vg~isksFP~s~F~~~p~C~~  142 (177)
                      +|++|+||.+|   +++|+|++| ++|+||+++|+.+++|..
T Consensus       128 lWv~V~eI~vd---~~kI~F~vG-I~KsfP~daFE~prdg~~  165 (169)
T d1ydua1         128 IWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYGVQRNGLR  165 (169)
T ss_dssp             SEESCCCBEEC---SSSEECTTS-SSSCCCHHHHSSCCCCCC
T ss_pred             EEEEEEEEEEc---CCeEEEEec-ccccCCHHHccCCcccee
Confidence            99999999997   789999999 699999999988766654