Citrus Sinensis ID: 030484

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MMKMKTRMRMKMMRKTKMKPMGHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccEEcccEEEEEEEEcccEEEEEEccEEEEcccccEEEEEcccEEcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHccccccccccccccHHHHHcccccHHHHHHHHHHccccccccEEEEEEEccccEEEEEcccccEccccccEEEEEcccEHHcHHHHHHHHHHHHHccccccccccccccccHHHcHHHcccccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MMKMKTRMRMKMMRktkmkpmghrdgeaggrskqsrSEKKSRKAMLKLgmkpipgvsrvtvkkskNILFviskpdvfkspttdtyVIFGEAKIEDLSSQLQTQAAEqfkapdlshvvskpessamaqddeevdetgvepkdIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Flexible Loop (DISEMBL)
MMKMKTRMRMKMmrktkmkpmghrdgeaggrskqsrseKKSRKAmlklgmkpipgvsrvtvkksknilfviskpdvfksptTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPessamaqddeevdetgvepKDIELVMTQAGVSRAKAVKalkaadgdiVSAIMELTN
Low Complexity Region (SEG)
mmkmktrmrmkmmrktkmkPMGHRDGEAGGrskqsrsekksrkAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Disordered region (IsUnstruct)
******************************************************GVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKI******************************************************************L******I*********
Disordered Region (DISOPRED)
***********************************************LGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAK**********************************************PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT*
Disordered Region (DISEMBL)
**********KMMRK****************************AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFK***************************VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Disordered Region (DISPRO)
**************************************KKSRK*MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQ***************************TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMKMKTRMRMKMMRKTKMKPMGHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9M612	205	Nascent polypeptide-assoc	N/A	no	0.869	0.746	0.839	1e-68
Q9LHG9	203	Nascent polypeptide-assoc	yes	no	0.863	0.748	0.889	2e-63
Q6ICZ8	204	Nascent polypeptide-assoc	no	no	0.869	0.75	0.819	3e-60
Q94JX9	217	Nascent polypeptide-assoc	no	no	0.835	0.677	0.705	9e-53
Q9SZY1	212	Nascent polypeptide-assoc	no	no	0.818	0.679	0.733	6e-51
Q8LGC6	209	Nascent polypeptide-assoc	no	no	0.823	0.693	0.695	9e-50
Q8AWF2	215	Nascent polypeptide-assoc	yes	no	0.857	0.702	0.632	4e-44
Q8JIU7	215	Nascent polypeptide-assoc	yes	no	0.857	0.702	0.619	9e-43
Q9BZK3	213	Putative nascent polypept	yes	no	0.852	0.704	0.587	1e-42
Q60817	215	Nascent polypeptide-assoc	yes	no	0.857	0.702	0.619	2e-42

>sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1

 Score =  258 bits (660), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 141/156 (90%), Gaps = 3/156 (1%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           G + GE  G+SKQSRSEKK RKAMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPT
Sbjct: 52  GEQGGE--GKSKQSRSEKKCRKAMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPT 109

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDE-EVDETGVEPK 140
           +DTY+ FGEAKIEDLSSQLQTQAAEQFKAP+LSHV  KPESS  AQ+DE EVD+TGVEPK
Sbjct: 110 SDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPESSTAAQEDEDEVDDTGVEPK 169

Query: 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           DIELVMTQAGVSR KAVKALKAADGDIVSAIM+LT 
Sbjct: 170 DIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLTT 205

May promote appropriate targeting of ribosome-nascent polypeptide complexes.
Pinus taeda (taxid: 3352)

>sp|Q9LHG9|NACA1_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/154 (88%), Positives = 144/154 (93%), Gaps = 2/154 (1%)

Query: 25  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
           DGEAGG+SKQSRSEKKSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DT
Sbjct: 50  DGEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDT 109

Query: 85  YVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMA--QDDEEVDETGVEPKDI 142
           YVIFGEAKIEDLSSQ+Q+QAAEQFKAPDLS+V+SK ESS+ A  QDDEEVDE GVEPKDI
Sbjct: 110 YVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDI 169

Query: 143 ELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           ELVMTQAGVSR  AVKALKAADGDIVSAIMELT 
Sbjct: 170 ELVMTQAGVSRPNAVKALKAADGDIVSAIMELTT 203

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ICZ8|NACA3_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1

 Score =  230 bits (587), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 143/161 (88%), Gaps = 8/161 (4%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           GH DGEAGGRSKQSRSEKKSRKAMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP 
Sbjct: 44  GH-DGEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPA 102

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPE-------SSAMAQDDEEVDE 134
           +DTYVIFGEAKIEDLSSQLQ+QAAEQFKAP+LS+V+S+ E       ++    DDEEVDE
Sbjct: 103 SDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDE 162

Query: 135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
            GVEPKDIELVMTQAGVS+ +AVKALK A+GDIVSAIMELT
Sbjct: 163 EGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2

 Score =  206 bits (523), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 128/153 (83%), Gaps = 6/153 (3%)

Query: 30  GRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFG 89
           G SKQSRSEKKSRKAMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP ++TYVIFG
Sbjct: 65  GSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFG 124

Query: 90  EAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDE------EVDETGVEPKDIE 143
           EAKIEDLSSQLQTQAA+QF+ P++     + E+S    + +      E+DETGVE +DI+
Sbjct: 125 EAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDID 184

Query: 144 LVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           LVMTQAGVSR+KAVKALK+ DGDIVSAIMELT 
Sbjct: 185 LVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY1|NACA4_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1

 Score =  199 bits (507), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 110/150 (73%), Positives = 131/150 (87%), Gaps = 6/150 (4%)

Query: 32  SKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 91
           SKQSRSEKKSRKAMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP ++TYVIFGEA
Sbjct: 62  SKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEA 121

Query: 92  KIEDLSSQLQTQAAEQFKAPDLSHVVSK---PESSAMAQ---DDEEVDETGVEPKDIELV 145
           KI+D+SSQLQ QAA++FK PD++ ++      E++ +AQ   DDE+VDETGVE KDI+LV
Sbjct: 122 KIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLV 181

Query: 146 MTQAGVSRAKAVKALKAADGDIVSAIMELT 175
           MTQAGVSR KAVKALK ++GDIVSAIMELT
Sbjct: 182 MTQAGVSRPKAVKALKESNGDIVSAIMELT 211

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGC6|NACA5_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2

 Score =  196 bits (497), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 130/151 (86%), Gaps = 6/151 (3%)

Query: 31  RSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGE 90
            +KQSRSEKKSRKA+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP  +TYVIFGE
Sbjct: 58  NAKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGE 117

Query: 91  AKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSA-MA-----QDDEEVDETGVEPKDIEL 144
           AK++DLSSQLQTQAA++FK PD++ ++    S A MA     +D+++VD+TGVE +DI+L
Sbjct: 118 AKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDL 177

Query: 145 VMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
           VMTQAGVS+AKAV ALKA DGDIVSAIMELT
Sbjct: 178 VMTQAGVSKAKAVSALKANDGDIVSAIMELT 208

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1

 Score =  177 bits (448), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 124/155 (80%), Gaps = 4/155 (2%)

Query: 25  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 85  YVIFGEAKIEDLSSQLQTQAAEQFKAP--DLSHVVSKPESSAM--AQDDEEVDETGVEPK 140
           Y++FGEAKIEDLS Q Q  AAE+FK P   +S+V    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
           DIELVM+QA VSRAKAV+ALK  + DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Oreochromis niloticus (taxid: 8128)

>sp|Q8JIU7|NACA_DANRE Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 123/155 (79%), Gaps = 4/155 (2%)

Query: 25  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 85  YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAM--AQDDEEVDETGVEPK 140
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
           DIELVM+QA VSRAKAV+ALK  + DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Danio rerio (taxid: 7955)

>sp|Q9BZK3|NACP1_HUMAN Putative nascent polypeptide-associated complex subunit alpha-like protein OS=Homo sapiens GN=NACAP1 PE=5 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 121/155 (78%), Gaps = 5/155 (3%)

Query: 25  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
           D E   ++KQ RSEKK+RKA  KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 59  DEEPVSKAKQRRSEKKARKARFKLGLQQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 118

Query: 85  YVIFGEAKIEDLSSQLQTQAAEQFKAPD--LSHVVSKPESSAMAQ--DDEEVDETGVEPK 140
           Y++FGEAKIEDLS + Q  AAE+FK     +S++    ++  + +  +DEEVDETGVE K
Sbjct: 119 YMVFGEAKIEDLSQEAQLAAAEKFKVQGEAVSNIQENTQTPTVQEGSEDEEVDETGVEIK 178

Query: 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
           DIELV++QA V  AKAV+ALK ++ DIV+AIMELT
Sbjct: 179 DIELVLSQANVWGAKAVRALKNSN-DIVNAIMELT 212

Homo sapiens (taxid: 9606)

>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 122/155 (78%), Gaps = 4/155 (2%)

Query: 25  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
           D E   ++KQSRSEKK+RKAM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DT
Sbjct: 60  DEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDT 119

Query: 85  YVIFGEAKIEDLSSQLQTQAAEQFK--APDLSHVVSKPESSAM--AQDDEEVDETGVEPK 140
           Y++FGEAKIEDLS Q Q  AAE+FK     +S++    ++  +    ++EEVDETGVE K
Sbjct: 120 YIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 179

Query: 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
           DIELVM+QA VSRAKAV+ALK    DIV+AIMELT
Sbjct: 180 DIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214

Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmic reticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blocks their interaction with the signal recognition particle (SRP), which normally targets nascent secretory peptides to the ER. Also reduces the inherent affinity of ribosomes for protein translocation sites in the ER membrane (M sites) (By similarity). Isoform 1 and isoform 2 appear to bind DNA and play roles in transcription. Isoform 1 may function as a specific coactivator for JUN, acting to stabilize the interaction of JUN homodimers with promoter elements.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
118482608	205	unknown [Populus trichocarpa]	0.880	0.756	0.935	2e-78
118481688	204	unknown [Populus trichocarpa]	0.880	0.759	0.922	6e-77
225470846	202	PREDICTED: nascent polypeptide-associate	0.880	0.767	0.916	2e-76
449529584	200	PREDICTED: nascent polypeptide-associate	0.869	0.765	0.890	4e-73
449453139	200	PREDICTED: nascent polypeptide-associate	0.869	0.765	0.890	4e-73
449453141	200	PREDICTED: nascent polypeptide-associate	0.869	0.765	0.890	6e-73
170773910	199	nascent polypeptide associated complex a	0.857	0.758	0.900	6e-73
351722347	203	uncharacterized protein LOC100500056 [Gl	0.863	0.748	0.888	4e-71
356571874	202	PREDICTED: nascent polypeptide-associate	0.863	0.752	0.875	6e-70
359481448	202	PREDICTED: nascent polypeptide-associate	0.869	0.757	0.858	2e-69

>gi|118482608|gb|ABK93224.1| unknown [Populus trichocarpa]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 145/155 (93%), Positives = 152/155 (98%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           G +DG+ GGRSKQSRSEKKSRKAMLKLGMK IPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 51  GQQDGDVGGRSKQSRSEKKSRKAMLKLGMKTIPGVSRVTVKKSKNILFVISKPDVFKSPT 110

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKD 141
           +DTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHV+SKPE+SA+AQDDEEVDETGVEPKD
Sbjct: 111 SDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVISKPETSAIAQDDEEVDETGVEPKD 170

Query: 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           IELVMTQAGVSR+KAVKALKAADGDIVSAIMELTN
Sbjct: 171 IELVMTQAGVSRSKAVKALKAADGDIVSAIMELTN 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481688|gb|ABK92784.1| unknown [Populus trichocarpa]

 Score =  291 bits (746), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/155 (92%), Positives = 151/155 (97%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           G +DG+A GRSKQSRSEKKSRKAMLKLGMK IPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 50  GQQDGDASGRSKQSRSEKKSRKAMLKLGMKTIPGVSRVTVKKSKNILFVISKPDVFKSPT 109

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKD 141
           +DTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHV+SKPE+SA+AQDDEEVDETGVEPKD
Sbjct: 110 SDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVISKPETSAVAQDDEEVDETGVEPKD 169

Query: 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           IELVMTQAGVSR+KAVKALKAADGDIVSAIM+LT 
Sbjct: 170 IELVMTQAGVSRSKAVKALKAADGDIVSAIMDLTT 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470846|ref|XP_002266597.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like [Vitis vinifera] gi|298205090|emb|CBI40611.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/155 (91%), Positives = 152/155 (98%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           G + G+A GRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 48  GEQGGDASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 107

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKD 141
           +DTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLS+V++KPE+S+MAQDDE+VDETGVEPKD
Sbjct: 108 SDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSNVIAKPEASSMAQDDEDVDETGVEPKD 167

Query: 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           IELVMTQAGVSR+KAVKALKAADGDIVSAIMELTN
Sbjct: 168 IELVMTQAGVSRSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529584|ref|XP_004171778.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/155 (89%), Positives = 146/155 (94%), Gaps = 2/155 (1%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           GH  GEA GRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 48  GH--GEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKD 141
           +DTY++FGEAKIEDLSSQLQTQAAEQFKAP+LS++ SKPE S + QDDEEVDETGVEPKD
Sbjct: 106 SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKD 165

Query: 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           IELVMTQAGVSR KAVKALKA +GDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453139|ref|XP_004144316.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/155 (89%), Positives = 146/155 (94%), Gaps = 2/155 (1%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           GH  GEA GRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 48  GH--GEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKD 141
           +DTY++FGEAKIEDLSSQLQTQAAEQFKAP+LS++ SKPE S + QDDEEVDETGVEPKD
Sbjct: 106 SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVVQDDEEVDETGVEPKD 165

Query: 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           IELVMTQAGVSR KAVKALKA +GDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPKAVKALKATEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453141|ref|XP_004144317.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus] gi|449529586|ref|XP_004171779.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Cucumis sativus]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 138/155 (89%), Positives = 147/155 (94%), Gaps = 2/155 (1%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           GH  GEA GRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT
Sbjct: 48  GH--GEASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 105

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKD 141
           +DTY++FGEAKIEDLSSQLQTQAAEQFKAP+LS++ SKPE S +AQDDE VDETGVEPKD
Sbjct: 106 SDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNLSNLTSKPEPSTVAQDDEVVDETGVEPKD 165

Query: 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           IELVMTQAGVSR +AVKALKAA+GDIVSAIMELTN
Sbjct: 166 IELVMTQAGVSRPRAVKALKAAEGDIVSAIMELTN 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170773910|gb|ACB32231.1| nascent polypeptide associated complex alpha [Solanum chacoense]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 136/151 (90%), Positives = 146/151 (96%)

Query: 26  GEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTY 85
           G+  GRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSP +DTY
Sbjct: 49  GDGSGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPNSDTY 108

Query: 86  VIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELV 145
           VIFGEAKIEDLSSQLQ+QAAEQFKAP+LS+V+SKPE S +AQDDE+VDETGVEPKDIELV
Sbjct: 109 VIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISKPEPSTVAQDDEDVDETGVEPKDIELV 168

Query: 146 MTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           MTQAGVSRAKAVKAL+AADGDIVSAIME+TN
Sbjct: 169 MTQAGVSRAKAVKALRAADGDIVSAIMEITN 199

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722347|ref|NP_001236217.1| uncharacterized protein LOC100500056 [Glycine max] gi|255628877|gb|ACU14783.1| unknown [Glycine max]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/152 (88%), Positives = 146/152 (96%)

Query: 25  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
           +G+A GRSKQ+RSEKKSRKAMLKLGMKP+ GVSRVTVKKSKNILFVISKPDVFKSPT+DT
Sbjct: 52  EGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDT 111

Query: 85  YVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIEL 144
           Y+IFGEAKIEDLSSQLQTQAAEQFKAP+LS+V SKPESSA+AQDDEEVDE GV+PKDIEL
Sbjct: 112 YIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNVGSKPESSAVAQDDEEVDEAGVDPKDIEL 171

Query: 145 VMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           VMTQAGVSR KAVKALKAA GDIV+AIMELTN
Sbjct: 172 VMTQAGVSRPKAVKALKAAGGDIVAAIMELTN 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571874|ref|XP_003554096.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like [Glycine max]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/152 (87%), Positives = 145/152 (95%)

Query: 25  DGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
           +G+A GRSKQ+RSEKKSRKAMLKLGMKP+ GVSRVTVKKSKNILFVISKPDVFKSPT++T
Sbjct: 51  EGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSET 110

Query: 85  YVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIEL 144
           Y+IFGEAKIEDLSSQLQTQAAEQFKAP+LS+V  KPESSA+AQDDEEVDE GV+PKDIEL
Sbjct: 111 YIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNVGLKPESSAVAQDDEEVDEAGVDPKDIEL 170

Query: 145 VMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           VMTQAGVSR KAVKALKAA GDIV+AIMELTN
Sbjct: 171 VMTQAGVSRPKAVKALKAASGDIVAAIMELTN 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481448|ref|XP_003632619.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein-like isoform 2 [Vitis vinifera]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/155 (85%), Positives = 144/155 (92%), Gaps = 2/155 (1%)

Query: 22  GHRDGEAGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
           G  DG   GRSKQSRSEKKSRKAMLKLGMK IPGVSRVT+KKSKNILFVISKPDVFKSPT
Sbjct: 50  GQDDG--SGRSKQSRSEKKSRKAMLKLGMKTIPGVSRVTIKKSKNILFVISKPDVFKSPT 107

Query: 82  TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKD 141
           +DTYVIFGEAKIEDLSSQLQTQAAEQFKAP++    ++PE++A+ QDDEEVDETGVEPKD
Sbjct: 108 SDTYVIFGEAKIEDLSSQLQTQAAEQFKAPNVHPAAAQPETAAVVQDDEEVDETGVEPKD 167

Query: 142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           I+LVMTQAGVSR+KAVKALKAADGDIVSAIMELTN
Sbjct: 168 IDLVMTQAGVSRSKAVKALKAADGDIVSAIMELTN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2092462	203	AT3G12390 [Arabidopsis thalian	0.857	0.743	0.816	1.4e-57
TAIR|locus:2159093	204	NACA3 "AT5G13850" [Arabidopsis	0.869	0.75	0.751	3.4e-54
TAIR|locus:2114703	217	NACA2 "AT3G49470" [Arabidopsis	0.75	0.608	0.702	7.9e-46
TAIR|locus:2127681	212	AT4G10480 "AT4G10480" [Arabido	0.75	0.622	0.702	1.6e-45
TAIR|locus:2206975	209	NACA5 "AT1G33040" [Arabidopsis	0.857	0.722	0.613	6.4e-44
FB|FBgn0086904	217	Nacalpha "Nascent polypeptide	0.744	0.603	0.632	7e-38
UNIPROTKB|Q5E9A1	215	NACA "Nascent polypeptide-asso	0.75	0.613	0.617	7e-38
UNIPROTKB|Q13765	215	NACA "Nascent polypeptide-asso	0.75	0.613	0.617	7e-38
MGI|MGI:106095	215	Naca "nascent polypeptide-asso	0.75	0.613	0.617	7e-38
UNIPROTKB|H9KYU8	192	NACA2 "Uncharacterized protein	0.744	0.682	0.607	1e-36

TAIR|locus:2092462 AT3G12390 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 125/153 (81%), Positives = 131/153 (85%)

Query:    25 DGEAGGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDT 84
             DGEAGG             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP +DT
Sbjct:    50 DGEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDT 109

Query:    85 YVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESS--AMAQDDEEVDETGVEPKDI 142
             YVIFGEAKIEDLSSQ+Q+QAAEQFKAPDLS+V+SK ESS  A+ QDDEEVDE GVEPKDI
Sbjct:   110 YVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDI 169

Query:   143 ELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
             ELVMTQAGVSR  AVKALKAADGDIVSAIMELT
Sbjct:   170 ELVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2159093 NACA3 "AT5G13850" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 121/161 (75%), Positives = 132/161 (81%)

Query:    22 GHRDGEAGGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPT 81
             GH DGEAGG             AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP 
Sbjct:    44 GH-DGEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPA 102

Query:    82 TDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMA-------QDDEEVDE 134
             +DTYVIFGEAKIEDLSSQLQ+QAAEQFKAP+LS+V+S+ E+S+ A        DDEEVDE
Sbjct:   103 SDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDE 162

Query:   135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
              GVEPKDIELVMTQAGVS+ +AVKALK A+GDIVSAIMELT
Sbjct:   163 EGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2114703 NACA2 "AT3G49470" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 97/138 (70%), Positives = 118/138 (85%)

Query:    44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 103
             AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP ++TYVIFGEAKIEDLSSQLQTQ
Sbjct:    79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQ 138

Query:   104 AAEQFKAPDLSHVVSKPESSA------MAQDDEEVDETGVEPKDIELVMTQAGVSRAKAV 157
             AA+QF+ P++     + E+S       + +D+EE+DETGVE +DI+LVMTQAGVSR+KAV
Sbjct:   139 AAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAV 198

Query:   158 KALKAADGDIVSAIMELT 175
             KALK+ DGDIVSAIMELT
Sbjct:   199 KALKSHDGDIVSAIMELT 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2127681 AT4G10480 "AT4G10480" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 97/138 (70%), Positives = 117/138 (84%)

Query:    44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 103
             AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP ++TYVIFGEAKI+D+SSQLQ Q
Sbjct:    74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQ 133

Query:   104 AAEQFKAPDLSHVVSKPESSAMA------QDDEEVDETGVEPKDIELVMTQAGVSRAKAV 157
             AA++FK PD++ ++   + S  A      +DDE+VDETGVE KDI+LVMTQAGVSR KAV
Sbjct:   134 AAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAV 193

Query:   158 KALKAADGDIVSAIMELT 175
             KALK ++GDIVSAIMELT
Sbjct:   194 KALKESNGDIVSAIMELT 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2206975 NACA5 "AT1G33040" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/158 (61%), Positives = 122/158 (77%)

Query:    25 DGEAGGXXXXXXXXXXXXX-AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTD 83
             +GE G               A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP  +
Sbjct:    51 EGEGGNENAKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAE 110

Query:    84 TYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSA-MA-----QDDEEVDETGV 137
             TYVIFGEAK++DLSSQLQTQAA++FK PD++ ++    S A MA     +D+++VD+TGV
Sbjct:   111 TYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGV 170

Query:   138 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 175
             E +DI+LVMTQAGVS+AKAV ALKA DGDIVSAIMELT
Sbjct:   171 EARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0086904 Nacalpha "Nascent polypeptide associated complex protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 86/136 (63%), Positives = 109/136 (80%)

Query:    45 MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQA 104
             MLKLG+K I GV+RVT++KSKNILFVI+ PDV+K+P +DTY++FGEAKIEDLS Q Q  A
Sbjct:    80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAA 139

Query:   105 AEQFKAPDLSHV---VSKPESSA-MAQDDEE-VDETGVEPKDIELVMTQAGVSRAKAVKA 159
             AE+FKAP+ +     V    S A +A++DEE VD+TGV+ KDIELV+TQA  +RAKA+KA
Sbjct:   140 AEKFKAPEAAGAADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKA 199

Query:   160 LKAADGDIVSAIMELT 175
             LK  + DIV+AIMELT
Sbjct:   200 LKNNNNDIVNAIMELT 215

GO:0048477 "oogenesis" evidence=IMP

GO:0005854 "nascent polypeptide-associated complex" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5E9A1 NACA "Nascent polypeptide-associated complex subunit alpha" [Bos taurus (taxid:9913)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 103
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   104 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 159
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   160 LKAADGDIVSAIMELT 175
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0005634 "nucleus" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q13765 NACA "Nascent polypeptide-associated complex subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 103
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   104 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 159
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   160 LKAADGDIVSAIMELT 175
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005854 "nascent polypeptide-associated complex" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003231 "cardiac ventricle development" evidence=ISS

GO:0010664 "negative regulation of striated muscle cell apoptotic process" evidence=ISS

GO:0043403 "skeletal muscle tissue regeneration" evidence=ISS

GO:0048633 "positive regulation of skeletal muscle tissue growth" evidence=ISS

GO:0048742 "regulation of skeletal muscle fiber development" evidence=ISS

GO:0061384 "heart trabecula morphogenesis" evidence=ISS

GO:1901227 "negative regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:1901228 "positive regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

MGI|MGI:106095 Naca "nascent polypeptide-associated complex alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/136 (61%), Positives = 108/136 (79%)

Query:    44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 103
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   104 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 159
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   139 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 198

Query:   160 LKAADGDIVSAIMELT 175
             LK    DIV+AIMELT
Sbjct:   199 LKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IDA

UNIPROTKB|H9KYU8 NACA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 82/135 (60%), Positives = 106/135 (78%)

Query:    44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQ 103
             AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q  
Sbjct:    56 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 115

Query:   104 AAEQFKAPD--LSHVVSKPESSAMAQD--DEEVDETGVEPKDIELVMTQAGVSRAKAVKA 159
             AAE+FK     +S++    ++  + ++  +EEVDETGVE KDIELVM+QA VSRAKAV+A
Sbjct:   116 AAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRA 175

Query:   160 LKAADGDIVSAIMEL 174
             LK    DIV+AIM L
Sbjct:   176 LKNNSNDIVNAIMAL 190

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8JIU7	NACA_DANRE	No assigned EC number	0.6193	0.8579	0.7023	yes	no
Q9LHG9	NACA1_ARATH	No assigned EC number	0.8896	0.8636	0.7487	yes	no
Q94518	NACA_DROME	No assigned EC number	0.6133	0.8238	0.6682	yes	no
Q9BZK3	NACP1_HUMAN	No assigned EC number	0.5870	0.8522	0.7042	yes	no
Q13765	NACA_HUMAN	No assigned EC number	0.6193	0.8579	0.7023	yes	no
Q8AWF2	NACA_ORENI	No assigned EC number	0.6322	0.8579	0.7023	yes	no
Q9M612	NACA_PINTA	No assigned EC number	0.8397	0.8693	0.7463	N/A	no
A2R4V1	NACA_ASPNC	No assigned EC number	0.5031	0.8068	0.7029	yes	no
Q68F90	NACA_XENTR	No assigned EC number	0.6193	0.8579	0.7056	yes	no
Q60817	NACA_MOUSE	No assigned EC number	0.6193	0.8579	0.7023	yes	no
Q5E9A1	NACA_BOVIN	No assigned EC number	0.6193	0.8579	0.7023	yes	no
Q86S66	NACA_CAEEL	No assigned EC number	0.5460	0.8409	0.7512	yes	no
Q54U07	NACA_DICDI	No assigned EC number	0.3725	0.8125	0.8937	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam01849	50	pfam01849, NAC, NAC domain	2e-17
COG1308	122	COG1308, EGD2, Transcription factor homologous to	2e-14
PRK06369	115	PRK06369, nac, nascent polypeptide-associated comp	1e-09
TIGR00264	116	TIGR00264, TIGR00264, alpha-NAC-related protein	0.001
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	0.001

>gnl|CDD|202009 pfam01849, NAC, NAC domain

 Score = 71.4 bits (176), Expect = 2e-17
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 47 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIED 95
          KLG+KPI GV  VT++K    + V + P V KSP ++TYV+FGEAK +D
Sbjct: 2  KLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPGSNTYVVFGEAKEKD 50

Length = 50

>gnl|CDD|224227 COG1308, EGD2, Transcription factor homologous to NACalpha-BTF3 [Transcription]

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 32/141 (22%)

Query: 39  KKSRKAMLKLG--MKPIPGVSRVTVKKSKNILFVISKPDVF--KSPTTDTYVIFGEAKIE 94
           +K +K M ++G  ++ + GV RV +K       VI  P V   K+    TY I G+   +
Sbjct: 9   RKLKKLMKQMGIDVEELDGVERVIIKLKDTEY-VIENPQVTVMKAMGQKTYQISGDPSAK 67

Query: 95  DLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRA 154
           +                     V KPE       ++ VDE+ +  +DI+LVM QAGVSR 
Sbjct: 68  E--------------------AVKKPE-------EKTVDESDISEEDIKLVMEQAGVSRE 100

Query: 155 KAVKALKAADGDIVSAIMELT 175
           +A+KAL+ A GD+  AIM+LT
Sbjct: 101 EAIKALEEAGGDLAEAIMKLT 121

Length = 122

>gnl|CDD|235786 PRK06369, nac, nascent polypeptide-associated complex protein; Reviewed

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 130 EEVDETGVEPK--DIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN 176
           E+  E  VE    DIELV  Q GVS  +A KAL+ A+GD+  AI++L++
Sbjct: 66  EKEAEKEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS 114

Length = 115

>gnl|CDD|232898 TIGR00264, TIGR00264, alpha-NAC-related protein

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174
           DIELVM Q  VS+ +A +AL+   GD+  AIM+L
Sbjct: 81  DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator [Unknown function, General]. Length = 116

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 34.7 bits (81), Expect = 0.001
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174
           ++ + I+ +    G SR +A KAL+A +G++  A+  L
Sbjct: 1   IDEELIKQLREM-GFSREEAKKALRATNGNVERAVEYL 37

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG2239	209	consensus Transcription factor containing NAC and	100.0
PRK06369	115	nac nascent polypeptide-associated complex protein	100.0
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	99.97
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	99.97
PF01849	58	NAC: NAC domain; InterPro: IPR002715 Nascent polyp	99.83
KOG2240	162	consensus RNA polymerase II general transcription	98.48
KOG3450	119	consensus Huntingtin interacting protein HYPK [Gen	97.81
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.72
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.95
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.45
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	95.4
COG4008	153	Predicted metal-binding transcription factor [Tran	91.58
COG2103	298	Predicted sugar phosphate isomerase [General funct	86.18
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	84.21
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	80.56

>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]

Probab=100.00  E-value=3.7e-48  Score=320.05  Aligned_cols=149  Identities=67%  Similarity=0.930  Sum_probs=133.0

Q ss_pred             CCCCCcCChhHHHHHHHHHHcCCcccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhhHHHHHHHHh
Q 030484           28 AGGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQ  107 (176)
Q Consensus        28 ~~~~~~~sr~eKK~rk~LkKLGlk~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~~~~~~a~e~  107 (176)
                      +..++++||+|||.|++|.||||++|+||+||+|++.+|++|+|++|+||++|+++||+|||+++.+|+++|++.+++++
T Consensus        56 ~~~~akqsrsekKark~m~KLGlk~v~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYiiFGeakiedls~q~q~~aae~  135 (209)
T KOG2239|consen   56 PVAKAKQSRSEKKARKAMLKLGLKQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIIFGEAKIEDLSQQAQMQAAER  135 (209)
T ss_pred             chhhhhcchHHHHHHHHHHhcCCccccceeEEEEEecccEEEEecCCceeccCCCceEEEecccccchhHHHHHHHHHHh
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccCCCC-----ccccccCccccccCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 030484          108 FKAPDLSHVVSKPE-----SSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  176 (176)
Q Consensus       108 ~~~~~~~~~~~~~~-----~~~~~~~~eevd~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~~  176 (176)
                      |..+..+.......     +..+++++++||++|++++||+|||.|+||||++||+||++|+||||||||+||.
T Consensus       136 fk~~~~~~~~~~~~~~~~~~~~ee~dEeeVD~tgve~kDIeLVmsQanvSR~kAVkALk~~~~DiVnAIM~LT~  209 (209)
T KOG2239|consen  136 FKVPQEAPGLIQEDTSATPPAQEESDEEEVDETGVEAKDIELVMSQANVSRAKAVKALKNNNNDIVNAIMELTK  209 (209)
T ss_pred             ccCCccccccccccccCCCccccccchhccCcccCchhhHHHHHHHhhhhHHHHHHHHHhccchHHHHHHHhhC
Confidence            98776543332211     1122345667999999999999999999999999999999999999999999984

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=100.00  E-value=4.2e-37  Score=236.49  Aligned_cols=105  Identities=31%  Similarity=0.519  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHcCCc--ccCCceEEEEEecCeEEEEecCCeEE--ecCCCCeEEEeccceecchhhHHHHHHHHhccCCC
Q 030484           37 SEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDVF--KSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD  112 (176)
Q Consensus        37 ~eKK~rk~LkKLGlk--~I~gV~rV~I~k~~~~~fvI~~PeV~--k~~gs~tyvVfGe~k~~d~~~~~~~~a~e~~~~~~  112 (176)
                      ++|++|+||+||||+  +| ||+||+|++++ ..|+|++|+||  +++|++||||||++++++++++             
T Consensus         6 nprk~rkmmkkmGik~e~i-~v~~V~Ir~~~-~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~-------------   70 (115)
T PRK06369          6 NPRKMKQMMKQMGIDVEEL-DVEEVIIRLKD-KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAE-------------   70 (115)
T ss_pred             CHHHHHHHHHHcCCcchhc-CeEEEEEEeCC-EEEEEcCCeEEEEecCCCcEEEEEeccEEeecccc-------------
Confidence            579999999999999  99 99999999987 89999999998  7999999999999999876432             


Q ss_pred             CCcccCCCCccccccCccccccCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 030484          113 LSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  176 (176)
Q Consensus       113 ~~~~~~~~~~~~~~~~~eevd~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~~  176 (176)
                                          .+.+|+++||+|||+||||||++|++||+++||||++|||.|+.
T Consensus        71 --------------------~~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         71 --------------------KEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             --------------------ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence                                13589999999999999999999999999999999999999973

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=99.97  E-value=8.4e-32  Score=208.42  Aligned_cols=111  Identities=40%  Similarity=0.641  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHcC--CcccCCceEEEEEecCeEEEEecCCeEE--ecCCCCeEEEeccceecchhhHHHHHHHHhccCCCC
Q 030484           38 EKKSRKAMLKLG--MKPIPGVSRVTVKKSKNILFVISKPDVF--KSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDL  113 (176)
Q Consensus        38 eKK~rk~LkKLG--lk~I~gV~rV~I~k~~~~~fvI~~PeV~--k~~gs~tyvVfGe~k~~d~~~~~~~~a~e~~~~~~~  113 (176)
                      =++++++|++||  +++++||+||+|+..++. |+|++|.||  +++|+.+|+|.|.+....                  
T Consensus         8 pr~l~k~mkqmGi~~eeld~v~~V~i~~kd~e-~vi~~P~V~~~~~~g~~~yqi~g~~~~~~------------------   68 (122)
T COG1308           8 PRKLKKLMKQMGIDVEELDGVERVIIKLKDTE-YVIENPQVTVMKAMGQKTYQISGDPSAKE------------------   68 (122)
T ss_pred             HHHHHHHHHHhCCCceeccCceEEEEEcCCce-EEeeCCcEEeehhcchhHHHHhcchhhhc------------------
Confidence            478889999999  558999999999998775 899999997  578999999999753100                  


Q ss_pred             CcccCCCCccccccCccccccCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 030484          114 SHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  176 (176)
Q Consensus       114 ~~~~~~~~~~~~~~~~eevd~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~~  176 (176)
                               ....+++..+++..|+++||+|||+||||||++||+||++++||||+|||+|+.
T Consensus        69 ---------~~~~~ee~~~d~~~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~~  122 (122)
T COG1308          69 ---------AVKKPEEKTVDESDISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLTE  122 (122)
T ss_pred             ---------ccccchhcccccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhcC
Confidence                     000112334667789999999999999999999999999999999999999974

>TIGR00264 alpha-NAC-related protein

Probab=99.97  E-value=5.7e-31  Score=202.56  Aligned_cols=103  Identities=33%  Similarity=0.506  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHcCCc--ccCCceEEEEEecCeEEEEecCCeE--EecCCCCeEEEeccceecchhhHHHHHHHHhccCCC
Q 030484           37 SEKKSRKAMLKLGMK--PIPGVSRVTVKKSKNILFVISKPDV--FKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD  112 (176)
Q Consensus        37 ~eKK~rk~LkKLGlk--~I~gV~rV~I~k~~~~~fvI~~PeV--~k~~gs~tyvVfGe~k~~d~~~~~~~~a~e~~~~~~  112 (176)
                      .=|++|+||++|||+  +++ |.+|+|+++++ .++|++|+|  |+++|+.||||||++++++...              
T Consensus        10 ~~~~mkkmMk~MGi~~~eid-V~~ViIk~~~k-~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~~~--------------   73 (116)
T TIGR00264        10 MLKQMQKMMKQMGMEMEDLD-VEEVIIVFDDE-EWIFENPKVQVMDILGVKTYQITGKPKKEKVEE--------------   73 (116)
T ss_pred             cHHHHHHHHHHcCCCccccc-cEEEEEEeCCc-eEEEecCeeEEEecCCcEEEEEecccEEeeccc--------------
Confidence            345999999999999  465 99999999754 447888888  7899999999999998753210              


Q ss_pred             CCcccCCCCccccccCccccccCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 030484          113 LSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  176 (176)
Q Consensus       113 ~~~~~~~~~~~~~~~~~eevd~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~~  176 (176)
                                           +.+|+++||+|||+||||||++|++||+++|||||+|||.|+.
T Consensus        74 ---------------------~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~~  116 (116)
T TIGR00264        74 ---------------------EEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLEE  116 (116)
T ss_pred             ---------------------ccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence                                 1259999999999999999999999999999999999999973

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation

Probab=99.83  E-value=4.4e-21  Score=130.83  Aligned_cols=58  Identities=52%  Similarity=0.886  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHcCCcccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecc
Q 030484           38 EKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIED   95 (176)
Q Consensus        38 eKK~rk~LkKLGlk~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d   95 (176)
                      |||+|++|+||||++|+||+||+|++.++.+|+|++|+||+++|++||+|||+++++|
T Consensus         1 ekk~~~~l~klgl~~i~~i~eV~i~~~dg~~~~~~~P~V~~~~~~~tyvV~G~~~~~~   58 (58)
T PF01849_consen    1 EKKLQKMLKKLGLKEIPGIEEVTIRKDDGTVFVFNNPEVQKSPGSNTYVVFGEAEEED   58 (58)
T ss_dssp             -------GHHCT-EEETTEEEEEEEETTTEEEEEESEEEEEETTCCEEEEESEEEEEE
T ss_pred             CHHHHHHHHHcCCcccCCcEEEEEEECCceEEEEcCCeEEEcCCCCEEEEEeeeEEcC
Confidence            6999999999999999999999999999899999999999999999999999998864

The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.

>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]

Probab=98.48  E-value=8.6e-08  Score=78.00  Aligned_cols=64  Identities=28%  Similarity=0.512  Sum_probs=59.8

Q ss_pred             ChhHHHHHHHHHHcCCcccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhh
Q 030484           35 SRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS   98 (176)
Q Consensus        35 sr~eKK~rk~LkKLGlk~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~   98 (176)
                      +.++||++.-|++|++..|+||.+|.|++.++.+++|++|.|..+...|||.|+|.++.+.++.
T Consensus        38 ~~ddkKlqs~lkkl~v~~i~~i~evn~~k~~g~Vihf~~~~vqasl~~nTf~ItG~~~~k~l~E  101 (162)
T KOG2240|consen   38 TADDKKLQSSLKKLGVNNIPGIEEVNMFKNDGTVIHFNNPKVQASLAANTFTITGHAETKQLTE  101 (162)
T ss_pred             CcccchhhhhhhhhccccccchhHhhhccccceeEecCCccccccccCCeEEEecCCcccchhh
Confidence            6679999999999999999999999999999999999999999999999999999999886544

>KOG3450 consensus Huntingtin interacting protein HYPK [General function prediction only]

Probab=97.81  E-value=1.3e-05  Score=61.68  Aligned_cols=43  Identities=33%  Similarity=0.573  Sum_probs=40.0

Q ss_pred             cCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhcC
Q 030484          134 ETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELTN  176 (176)
Q Consensus       134 ~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~~  176 (176)
                      ...|..+||+|||...-+++..|.+-|++++||+|.|+-.|++
T Consensus        76 kV~IkkeDlelImnELei~k~~aer~LrE~~Gdvv~Alral~s  118 (119)
T KOG3450|consen   76 KVTIKKEDLELIMNELEISKAAAERSLREHMGDVVEALRALTS  118 (119)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence            3578999999999999999999999999999999999998864

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.72  E-value=4.1e-05  Score=47.35  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=32.1

Q ss_pred             CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      ++++.|+.+++. |+|++.|++||+.++||+-.|+--|
T Consensus         1 i~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    1 IDEEKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             SHHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            467889999999 9999999999999999999998644

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=95.95  E-value=0.012  Score=37.44  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=27.9

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      +.|.-.|+=|||+++.|+..|..+++||-.||=
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~   34 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVN   34 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHH
Confidence            467888999999999999999999999988874

>cd00194 UBA Ubiquitin Associated domain

Probab=95.45  E-value=0.029  Score=34.13  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=26.6

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       141 DIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .|+.+++ .|.+++.++.||+.++||+-.|+--|
T Consensus         4 ~v~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L   36 (38)
T cd00194           4 KLEQLLE-MGFSREEARKALRATNNNVERAVEWL   36 (38)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            4444444 69999999999999999999887544

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=95.40  E-value=0.03  Score=33.93  Aligned_cols=33  Identities=39%  Similarity=0.609  Sum_probs=25.8

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          141 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       141 DIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .|..++ ..|.+++.|+.||+.++||+-.|+--|
T Consensus         4 ~v~~L~-~mGf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        4 KIDQLL-EMGFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            344444 349999999999999999998886443

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>COG4008 Predicted metal-binding transcription factor [Transcription]

Probab=91.58  E-value=0.28  Score=39.32  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             ccCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          133 DETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       133 d~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      +...++.+.++++..-. ||.++|++||.+++ |+..|.-
T Consensus       109 ~~s~~~~e~v~v~a~a~-v~~eeAr~aleeag-Dl~~A~k  146 (153)
T COG4008         109 GHSEPPVEEVEVLADAF-VTPEEAREALEEAG-DLRTAMK  146 (153)
T ss_pred             ccCCCcHHHHHHHHHhc-CCHHHHHHHHHHcC-CHHHHHH
Confidence            34456778888887655 99999999999995 9999853

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=86.18  E-value=1  Score=40.14  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=33.8

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .+-+--+..||+-|||+|++|..+|++++|++=-||+-+
T Consensus       231 KL~dRa~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~  269 (298)
T COG2103         231 KLRDRAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVML  269 (298)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHH
Confidence            455778899999999999999999999999997777643

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=84.21  E-value=1.4  Score=38.67  Aligned_cols=38  Identities=39%  Similarity=0.583  Sum_probs=30.9

Q ss_pred             CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      +-.-=+.+|++-+|||+++|.++|.+++|++=-||+-+
T Consensus       234 l~~ra~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~  271 (299)
T PRK05441        234 LVDRAVRIVMEATGVSREEAEAALEAADGSVKLAIVMI  271 (299)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHH
Confidence            34556778999999999999999999999997777643

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=80.56  E-value=3.7  Score=25.63  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             cHHHHHHHh-CCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          141 DIELVMTQA-GVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       141 DIeLVmeQa-gvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .|+-+.+-. +++++....+|+.++||+-.||-.|
T Consensus         4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~L   38 (42)
T PF02845_consen    4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDAL   38 (42)
T ss_dssp             HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            445555554 7788888888888888886665443

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
3mcb_A	54	Crystal Structure Of Nac Domains Of Human Nascent P		5e-19
3lkx_B	54	Human Nac Dimerization Domain Length = 54		2e-18
3mce_A	61	Crystal Structure Of The Nac Domain Of Alpha Subuni		8e-18

>pdb|3MCB|A Chain A, Crystal Structure Of Nac Domains Of Human Nascent Polypeptide- Associated Complex (Nac) Length = 54

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 50/54 (92%)
Query: 44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 97
          AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 1  AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>pdb|3LKX|B Chain B, Human Nac Dimerization Domain Length = 54

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 48/53 (90%)
Query: 49  GMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQ 101
           G++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS Q Q
Sbjct: 2   GLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQ 54

>pdb|3MCE|A Chain A, Crystal Structure Of The Nac Domain Of Alpha Subunit Of Nascent Polypeptide-Associated Complex(Nac) Length = 61

Iteration: 1
 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 48/51 (94%)
Query: 47 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 97
          KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 10 KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	7e-27
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	3e-26
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	1e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B Length = 54

 Score = 95.6 bits (238), Expect = 7e-27
 Identities = 39/54 (72%), Positives = 50/54 (92%)

Query: 44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 97
          AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 1  AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens} Length = 61

 Score = 93.7 bits (233), Expect = 3e-26
 Identities = 37/53 (69%), Positives = 48/53 (90%)

Query: 45 MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 97
            KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP +DTY++FGEAKIEDLS
Sbjct: 8  FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Length = 102

 Score = 88.5 bits (219), Expect = 1e-23
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 36/136 (26%)

Query: 41  SRKAMLKLGMKPIPGVSRVTVK-KSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQ 99
           S    + + MK + GV  V +K K K I+    K +V +     TY + G+A+   L ++
Sbjct: 2   SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAE 61

Query: 100 LQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKA 159
           ++                                   +   DIELVM Q G SR  A +A
Sbjct: 62  ME-----------------------------------IPEDDIELVMNQTGASREDATRA 86

Query: 160 LKAADGDIVSAIMELT 175
           L+   GD+  AIM L+
Sbjct: 87  LQETGGDLAEAIMRLS 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 34/164 (20%)

Query: 23  HRDGEAGGRSKQSRSEKK----SRKAMLK-LGMKPIPGVSRVTVKKSKNILFVISKPDVF 77
           H D E G   +     K        A +     K +  + + ++   + I  +I   D  
Sbjct: 6   HMDFETG---EHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKD-- 59

Query: 78  KSPTTDTYVIFGEAKIEDLSSQLQTQAAEQF----KAPDLSHVVS--KPESSAMAQDDEE 131
               + T  +F            Q +  ++F       +   ++S  K E    +     
Sbjct: 60  --AVSGTLRLF------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 132 -VDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 174
            +++      D + V  +  VSR +    L+        A++EL
Sbjct: 112 YIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLR-------QALLEL 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	100.0
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	99.86
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	99.85
3mcb_B	58	Transcription factor BTF3; beta-barrel like struct	99.28
3lkx_A	66	Transcription factor BTF3; beta-barrel, chaperone;	99.25
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	98.6
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	98.3
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.17
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	95.29
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	94.93
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	94.34
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	94.04
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	93.98
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	93.43
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	93.31
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	93.23
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	92.91
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	92.87
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	92.78
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	92.69
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	92.68
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	91.47
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	91.43
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	91.28
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	91.08
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	91.06
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	90.84
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	89.63
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	89.06
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	88.69
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	88.05
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	87.69
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	87.66
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	87.12
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	86.42
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	85.79
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	85.4
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	85.24
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	84.71
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	84.11
2dna_A	67	Unnamed protein product; ubiquitin associated doma	81.99
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	81.64
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	80.45

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=100.00  E-value=4.6e-36  Score=225.49  Aligned_cols=97  Identities=37%  Similarity=0.561  Sum_probs=81.6

Q ss_pred             HHHHHcCC--cccCCceEEEEEecCeEEEEecCCeEEe--cCCCCeEEEeccceecchhhHHHHHHHHhccCCCCCcccC
Q 030484           43 KAMLKLGM--KPIPGVSRVTVKKSKNILFVISKPDVFK--SPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVS  118 (176)
Q Consensus        43 k~LkKLGl--k~I~gV~rV~I~k~~~~~fvI~~PeV~k--~~gs~tyvVfGe~k~~d~~~~~~~~a~e~~~~~~~~~~~~  118 (176)
                      ++|+||||  ++|+||+||+|++++ .+|+|++|+||+  ++|++||+|||+++.+++.                     
T Consensus         2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~---------------------   59 (102)
T 1tr8_A            2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE---------------------   59 (102)
T ss_dssp             --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred             chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence            67999999  799999999999998 899999999995  8999999999999987640                     


Q ss_pred             CCCccccccCccccccCCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 030484          119 KPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT  175 (176)
Q Consensus       119 ~~~~~~~~~~~eevd~~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~  175 (176)
                                    .+.+++++||+|||+|+||||++|++||++|+||||+|||.||
T Consensus        60 --------------~e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt  102 (102)
T 1tr8_A           60 --------------AEMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS  102 (102)
T ss_dssp             --------------EECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred             --------------ccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence                          1168999999999999999999999999999999999999996

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}

Probab=99.86  E-value=9.1e-23  Score=140.52  Aligned_cols=57  Identities=65%  Similarity=1.092  Sum_probs=50.7

Q ss_pred             HHHHHHcCCcccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhh
Q 030484           42 RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS   98 (176)
Q Consensus        42 rk~LkKLGlk~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~   98 (176)
                      |++|+||||++|+||+||+|+++++.+|+|++|+||++++++||+|||+++.+|+++
T Consensus         5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q   61 (61)
T 3mce_A            5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ   61 (61)
T ss_dssp             SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred             HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence            467999999999999999999999999999999999999999999999999999864

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B

Probab=99.85  E-value=4.9e-22  Score=133.94  Aligned_cols=54  Identities=72%  Similarity=1.188  Sum_probs=51.6

Q ss_pred             HHHHcCCcccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchh
Q 030484           44 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS   97 (176)
Q Consensus        44 ~LkKLGlk~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~   97 (176)
                      +|+||||++|+||+||+|+++++.+|+|++|+||++++++||+|||+++.+|++
T Consensus         1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~   54 (54)
T 3mcb_A            1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS   54 (54)
T ss_dssp             CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred             CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence            478999999999999999999999999999999999999999999999999863

>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}

Probab=99.28  E-value=6.7e-12  Score=85.47  Aligned_cols=48  Identities=23%  Similarity=0.429  Sum_probs=45.1

Q ss_pred             cccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhh
Q 030484           51 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS   98 (176)
Q Consensus        51 k~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~   98 (176)
                      ..|+||+||+|++.++++|+|++|.|+.++.+|||+|+|.++++++++
T Consensus         2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e   49 (58)
T 3mcb_B            2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE   49 (58)
T ss_dssp             CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred             cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence            478999999999999999999999999999999999999999998754

>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}

Probab=99.25  E-value=1.4e-11  Score=85.87  Aligned_cols=48  Identities=23%  Similarity=0.429  Sum_probs=44.1

Q ss_pred             cccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccceecchhh
Q 030484           51 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS   98 (176)
Q Consensus        51 k~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~k~~d~~~   98 (176)
                      ..|+||+||+|++.++++|+|++|.|+.++.+|||+|+|.++++++++
T Consensus         2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e   49 (66)
T 3lkx_A            2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE   49 (66)
T ss_dssp             EECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred             cccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence            578999999999999999999999999999999999999999998754

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.60  E-value=2.7e-08  Score=74.72  Aligned_cols=37  Identities=24%  Similarity=0.391  Sum_probs=35.1

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT  175 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L~  175 (176)
                      ++||++||++||||+++|+.||.+++|||..||..|-
T Consensus        40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll   76 (104)
T 1wj7_A           40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL   76 (104)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            6799999999999999999999999999999999873

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=98.30  E-value=7.4e-07  Score=61.55  Aligned_cols=40  Identities=25%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             CCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       135 ~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      ..|+.++|+.+.++||++..++++||.+++|||..||..|
T Consensus         6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L   45 (64)
T 2cp9_A            6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL   45 (64)
T ss_dssp             SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            3588999999999999999999999999999999999877

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.17  E-value=0.00043  Score=41.96  Aligned_cols=35  Identities=31%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      ++.|..+++. |.|++.|++||+.++||+-.|+--|
T Consensus         5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L   39 (40)
T 1z96_A            5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4578889987 9999999999999999998887544

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=95.29  E-value=0.011  Score=36.60  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          138 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       138 ~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      +++.|+.+++ -|.+|+.|++||+.++||+=.|+-
T Consensus         4 ~e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~   37 (43)
T 2g3q_A            4 KSLAVEELSG-MGFTEEEAHNALEKCNWDLEAATN   37 (43)
T ss_dssp             HHHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred             CHHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHH
Confidence            3556777765 699999999999999999977654

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.93  E-value=0.028  Score=37.95  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  173 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~  173 (176)
                      +++++.|+.+++ .|.+|+.|++||+.++||+=.|+--
T Consensus         7 ~~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~   43 (63)
T 1wji_A            7 GVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNV   43 (63)
T ss_dssp             SSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            357778887775 7999999999999999999766543

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.34  E-value=0.05  Score=36.39  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=29.9

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      .++++.|..+++ .|.+|+.|++||+.++||+=.|+-
T Consensus         7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e   42 (63)
T 2dak_A            7 GPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD   42 (63)
T ss_dssp             CCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            356778887776 799999999999999999766653

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=94.04  E-value=0.063  Score=37.44  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      ..++.|..+++ .|.+|+.|++||+.++||+=.|+=-|
T Consensus        28 ~~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~L   64 (73)
T 1vg5_A           28 ASEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEIL   64 (73)
T ss_dssp             CCHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             ccHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            35678888876 69999999999999999997776443

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.98  E-value=0.041  Score=37.67  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=27.1

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  171 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai  171 (176)
                      ++.|+.|+ -.|.|++.|++||+.++|||-.|+
T Consensus        20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa   51 (63)
T 1wgn_A           20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQIL   51 (63)
T ss_dssp             HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence            45677777 468999999999999999997774

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.43  E-value=0.11  Score=35.03  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=28.5

Q ss_pred             CCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484          137 VEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  171 (176)
Q Consensus       137 ~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai  171 (176)
                      ++++.|..+++ .|.+++.|++||+.++| |+=.|+
T Consensus        18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~   52 (64)
T 2cpw_A           18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC   52 (64)
T ss_dssp             SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence            45677887776 79999999999999998 986664

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.31  E-value=0.098  Score=37.40  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      .++++.|..+++ .|.+|+.|++||+.++||+=.|+=
T Consensus        27 ~~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e   62 (83)
T 1veg_A           27 SPSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAAQ   62 (83)
T ss_dssp             CCCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            457788988875 699999999999999999866653

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=93.23  E-value=0.11  Score=35.99  Aligned_cols=37  Identities=30%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  173 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~  173 (176)
                      .++++.|..++ .-|.+|+.|++||+.++||+=.|+=-
T Consensus        27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave~   63 (73)
T 1wiv_A           27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATDW   63 (73)
T ss_dssp             SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            46778888777 47999999999999999999777543

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.91  E-value=0.14  Score=36.40  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  171 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai  171 (176)
                      .++++.|..+++ .|.+++.|++||+.++||+=.|+
T Consensus        27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~   61 (83)
T 2dai_A           27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM   61 (83)
T ss_dssp             SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence            467888888886 89999999999999999986664

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.87  E-value=0.14  Score=34.49  Aligned_cols=35  Identities=31%  Similarity=0.469  Sum_probs=29.5

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHc-CCcHHHHH
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAA-DGDIVSAI  171 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~-~GDiv~Ai  171 (176)
                      .++++.|.-+++ .|.+|+.|++||+.+ +||+=.|+
T Consensus         7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~   42 (64)
T 1whc_A            7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM   42 (64)
T ss_dssp             CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence            567788888875 899999999999999 69986664

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.78  E-value=0.12  Score=32.36  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=28.5

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI  171 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai  171 (176)
                      .++++.|..+++ .|.+++.|++||+.+ ||+=.|+
T Consensus         7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~   40 (47)
T 2ekk_A            7 GVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQAT   40 (47)
T ss_dssp             SSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHH
Confidence            567888888887 799999999999999 5875554

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.69  E-value=0.093  Score=33.48  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=26.8

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  173 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~  173 (176)
                      ++.|..++ ..|.+|+.|++||+.++||+=.|+=-
T Consensus         9 ~~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e~   42 (49)
T 1ify_A            9 ETMLTEIM-SMGYERERVVAALRASYNNPHRAVEY   42 (49)
T ss_dssp             HHHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            44565555 45999999999999999999777543

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.68  E-value=0.17  Score=33.52  Aligned_cols=31  Identities=35%  Similarity=0.383  Sum_probs=25.6

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSA  170 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~GDiv~A  170 (176)
                      +.-|+..|+ .|.||+.|++||.-++|||--|
T Consensus        10 e~~I~~L~~-lGF~r~~ai~AL~~a~nnve~A   40 (53)
T 2d9s_A           10 SSEIERLMS-QGYSYQDIQKALVIAHNNIEMA   40 (53)
T ss_dssp             HHHHHHHHH-HTCCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHhcCCHHHH
Confidence            345888876 4999999999999999999444

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.47  E-value=0.21  Score=34.54  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=28.5

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  171 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai  171 (176)
                      .++++-|..+++ .|.+|+.|++||+.++| |+=.|+
T Consensus         7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~   42 (74)
T 2dag_A            7 GLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM   42 (74)
T ss_dssp             SSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence            356777777776 79999999999999997 776554

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=91.43  E-value=0.32  Score=32.77  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=29.1

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  171 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai  171 (176)
                      ..+++.|.-+++ -|.+|+.|++||..++| |+=.|+
T Consensus         7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~   42 (64)
T 2crn_A            7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL   42 (64)
T ss_dssp             CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence            457778888877 89999999999999987 876654

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=91.28  E-value=0.23  Score=32.02  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=28.7

Q ss_pred             cccHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484          139 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       139 eeDIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L  174 (176)
                      ++.|..+++ -|. +|+.+++||+.++||+=.||--|
T Consensus        13 ~~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L   48 (52)
T 2jy5_A           13 QQQLEQLSA-MGFLNREANLQALIATGGDINAAIERL   48 (52)
T ss_dssp             HHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            456776664 588 99999999999999998887554

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=91.08  E-value=0.22  Score=32.20  Aligned_cols=33  Identities=36%  Similarity=0.520  Sum_probs=26.4

Q ss_pred             cHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484          141 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       141 DIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .|..+++ .|. +|+.|++||+.++||+=.||--|
T Consensus        14 ~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L   47 (53)
T 2knz_A           14 QLEQLNS-MGFINREANLQALIATGGDINAAIERL   47 (53)
T ss_dssp             HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            4655553 588 99999999999999998886544

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=91.06  E-value=0.23  Score=30.50  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=29.1

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      +-|.--++-|||+.+.|+..|..+++|+-.||-
T Consensus         7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~   39 (46)
T 1v92_A            7 DALREFVAVTGAEEDRARFFLESAGWDLQIALA   39 (46)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHH
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence            357777888999999999999999999988874

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=90.84  E-value=0.2  Score=33.03  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSA  170 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~A  170 (176)
                      +-|+-.|+ .|.||+.|++||.-++|||--|
T Consensus        13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A   42 (52)
T 2ooa_A           13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA   42 (52)
T ss_dssp             HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence            67877775 5999999999999999998443

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=89.63  E-value=0.41  Score=30.20  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=25.6

Q ss_pred             ccHHHHHHHhCCC-HHHHHHHHHHcCCcHHHHHhhh
Q 030484          140 KDIELVMTQAGVS-RAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       140 eDIeLVmeQagvS-r~kAikALke~~GDiv~Ai~~L  174 (176)
                      +-|.-++ .-|.+ |..+++||+.++||+=.||--|
T Consensus         9 ~~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L   43 (46)
T 2bwb_A            9 HQLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL   43 (46)
T ss_dssp             HHHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            3454444 45875 7788999999999998887654

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=89.06  E-value=0.31  Score=31.83  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             cccHHHHHHHhCCCHHH-HHHHHHHcCCcHHHHHhhh
Q 030484          139 PKDIELVMTQAGVSRAK-AVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       139 eeDIeLVmeQagvSr~k-AikALke~~GDiv~Ai~~L  174 (176)
                      ++.|..++ ..|.+++. +++||+.++|||=.||-.|
T Consensus        10 ~~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L   45 (54)
T 2dah_A           10 QVQLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL   45 (54)
T ss_dssp             HHHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            34565555 45897655 6999999999998887554

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=88.69  E-value=0.47  Score=35.29  Aligned_cols=37  Identities=19%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .+++-|.-+++ .|++|+.|++||+.++||+-.|+=-|
T Consensus        77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L  113 (126)
T 2lbc_A           77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI  113 (126)
T ss_dssp             CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            56777887776 79999999999999999997775433

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=88.05  E-value=0.55  Score=31.14  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=26.0

Q ss_pred             ccHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484          140 KDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       140 eDIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L  174 (176)
                      +-|.-++ .-|. +|+.+++||+.++||+=.||-.|
T Consensus        19 ~qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L   53 (58)
T 1wr1_B           19 HQLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL   53 (58)
T ss_dssp             HHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            3565555 3587 48888999999999998887554

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=87.69  E-value=0.47  Score=33.78  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=28.4

Q ss_pred             CCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          137 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       137 ~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      ++++-|..+++ .|.+|+.|++||+.++||+=.|+=
T Consensus        20 ~n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~e   54 (85)
T 2dkl_A           20 IMSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMS   54 (85)
T ss_dssp             HHHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            34566776665 799999999999999999977763

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.66  E-value=0.57  Score=31.12  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  173 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~  173 (176)
                      ++-|.-.+.-|||+++.|+..|..+++|+-.||-.
T Consensus        16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~   50 (62)
T 2dal_A           16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTM   50 (62)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            35688888999999999999999999999888743

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=87.12  E-value=0.61  Score=29.98  Aligned_cols=30  Identities=40%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSA  170 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~A  170 (176)
                      +.|...|++ |.||+.|++||--+++||-.|
T Consensus         6 ~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A   35 (46)
T 2oo9_A            6 SEIENLMSQ-GYSYQDIQKALVIAQNNIEMA   35 (46)
T ss_dssp             HHHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence            456666654 999999999999999999655

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=86.42  E-value=0.52  Score=31.45  Aligned_cols=32  Identities=38%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHH
Q 030484          138 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSA  170 (176)
Q Consensus       138 ~eeDIeLVmeQagvSr~kAikALke~~GDiv~A  170 (176)
                      +++-|.-.|++ |.||+.|++||.-++|||--|
T Consensus         7 ~e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~A   38 (56)
T 2juj_A            7 LSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMA   38 (56)
T ss_dssp             HHHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHH
T ss_pred             ChHHHHHHHHc-CCCHHHHHHHHHHhcccHHHH
Confidence            34577777764 999999999999999998544

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=85.79  E-value=1  Score=31.80  Aligned_cols=36  Identities=14%  Similarity=0.180  Sum_probs=29.4

Q ss_pred             CCCCcccHHHHHHHhCCCHHHHHHHHHHcC-CcHHHHH
Q 030484          135 TGVEPKDIELVMTQAGVSRAKAVKALKAAD-GDIVSAI  171 (176)
Q Consensus       135 ~~~~eeDIeLVmeQagvSr~kAikALke~~-GDiv~Ai  171 (176)
                      ..++++-|..+++ .|.+|+.|++||+.++ ||+=.|+
T Consensus        26 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~   62 (84)
T 1vek_A           26 PVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM   62 (84)
T ss_dssp             CCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred             CCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence            3567888888886 7999999999999985 6986664

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=85.40  E-value=0.64  Score=34.84  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=22.6

Q ss_pred             hCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          149 AGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       149 agvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .|.+++.|++||+.++||+=.|+=-|
T Consensus        86 MGF~~~~a~~AL~~~~nd~erAlewL  111 (118)
T 4ae4_A           86 MGFELKDIKEVLLLHNNDQDNALEDL  111 (118)
T ss_dssp             TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            49999999999999999998886433

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=85.24  E-value=0.97  Score=31.45  Aligned_cols=35  Identities=37%  Similarity=0.527  Sum_probs=27.5

Q ss_pred             cccHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484          139 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       139 eeDIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L  174 (176)
                      ++-|.-+++ .|. .|+.+++||+.++||+=.||-.|
T Consensus        30 e~qi~qL~e-MGF~dr~~~~~AL~~t~Gnve~Ave~L   65 (74)
T 1vej_A           30 QQELEELKA-LGFANRDANLQALVATDGDIHAAIEML   65 (74)
T ss_dssp             HHHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            456766664 587 68999999999999998887554

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=84.71  E-value=1  Score=29.00  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             cccHHHHHHHh-CCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          139 PKDIELVMTQA-GVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       139 eeDIeLVmeQa-gvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      +++++++.+=. .|++..++.+|+.++||+=.||-.|
T Consensus         5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L   41 (49)
T 1otr_A            5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL   41 (49)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            57888888885 9999999999999999997776443

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.11  E-value=1.2  Score=30.11  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIME  173 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~  173 (176)
                      +-|.--++-|||+++.|+..|..+++|+-.||-.
T Consensus        19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~   52 (66)
T 2dzl_A           19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALST   52 (66)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            3488888999999999999999999999888753

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=81.99  E-value=1.2  Score=30.60  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=23.9

Q ss_pred             cHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484          141 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       141 DIeLVmeQagv-Sr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .|.-+.+ .|. .|+..++||+.++|||-.||-.|
T Consensus        22 ql~qL~~-MGF~d~~an~~AL~at~Gnve~Ave~L   55 (67)
T 2dna_A           22 EMECLQA-MGFVNYNANLQALIATDGDTNAAIYKL   55 (67)
T ss_dssp             HHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHH-cCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            4555443 464 56666999999999998887554

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=81.64  E-value=1.4  Score=27.88  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             ccHHHHHHHhCCCH-HHHHHHHHHcCCcHHHHHhh
Q 030484          140 KDIELVMTQAGVSR-AKAVKALKAADGDIVSAIME  173 (176)
Q Consensus       140 eDIeLVmeQagvSr-~kAikALke~~GDiv~Ai~~  173 (176)
                      +-|.--.+=||++- ++|+.-|..+|.||-.|+-.
T Consensus         7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~   41 (45)
T 3e21_A            7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING   41 (45)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence            44555667789996 99999999999999999754

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=80.45  E-value=1.1  Score=29.58  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=22.5

Q ss_pred             CC-CHHHHHHHHHHcCCcHHHHHhhh
Q 030484          150 GV-SRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       150 gv-Sr~kAikALke~~GDiv~Ai~~L  174 (176)
                      |. .++.-++||+.++|||=.||..|
T Consensus        20 GF~D~~~N~~aL~~~~gnv~~aI~~L   45 (54)
T 2cp8_A           20 GFCDRQLNLRLLKKHNYNILQVVTEL   45 (54)
T ss_dssp             TCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            54 99999999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	96.25
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	94.75
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	94.67
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	94.66
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	94.63
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	94.57
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	94.44
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	94.02
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	93.45
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	92.8
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	92.69
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	90.97
d1eeja2	60	Disulfide bond isomerase, DsbC, N-terminal domain	88.09
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	87.03
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	86.97
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	86.53

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.003  Score=40.53  Aligned_cols=39  Identities=26%  Similarity=0.343  Sum_probs=36.1

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      .|+.++|+-+=++||++--+..+||.+++||+-.||--|
T Consensus         2 ~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~L   40 (54)
T d1efub3           2 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENM   40 (54)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            478899999999999999999999999999999998655

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.75  E-value=0.02  Score=36.24  Aligned_cols=35  Identities=23%  Similarity=0.180  Sum_probs=30.5

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      +.|+-.=++||++--+..+||.+++|||-.||--|
T Consensus         4 elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~L   38 (52)
T d1aipc1           4 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            46677778999999999999999999999997544

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.018  Score=40.35  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      +-|+.||+=||||.++|+=||-+++||+-.||=-|
T Consensus        34 ~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~l   68 (91)
T d1wj7a1          34 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL   68 (91)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHH
Confidence            56889999999999999999999999997776433

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=94.66  E-value=0.013  Score=35.75  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             hCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          149 AGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       149 agvSr~kAikALke~~GDiv~Ai~  172 (176)
                      -|.|+++|++||+++++|+-.|.=
T Consensus        14 MGF~e~~A~~AL~k~~wnleaAtN   37 (43)
T d2g3qa1          14 MGFTEEEAHNALEKCNWDLEAATN   37 (43)
T ss_dssp             TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            499999999999999999977753

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.63  E-value=0.02  Score=38.19  Aligned_cols=37  Identities=30%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             CCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       135 ~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      ..++++-|..+++ -|.||+.|++||+.++|++=.|+=
T Consensus        26 ~~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~   62 (73)
T d1wiva_          26 SDIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATD   62 (73)
T ss_dssp             CSSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            3467788888885 899999999999999999876653

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.008  Score=36.17  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=25.6

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          142 IELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       142 IeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      |.-+++ .|.||+.|++||+.++|++-.|+=-|
T Consensus         8 i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~L   39 (41)
T d1oqya1           8 LTEIMS-MGYERERVVAALRASYNNPHRAVEYL   39 (41)
T ss_dssp             HHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred             HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            444443 79999999999999999998886443

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.44  E-value=0.013  Score=37.60  Aligned_cols=37  Identities=24%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 030484          138 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL  174 (176)
Q Consensus       138 ~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~~L  174 (176)
                      +.+.|+-+=++||++--+..+||.+++||+-.||--|
T Consensus         4 s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~L   40 (56)
T d1xb2b1           4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL   40 (56)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            3456777778999999999999999999999998655

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.029  Score=36.24  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=30.7

Q ss_pred             CCCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          135 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       135 ~~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      .+++++.|.-+++ -|.||+.|++||+.++||+-.|+=
T Consensus         6 ~~~d~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~   42 (63)
T d1wjia_           6 SGVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALN   42 (63)
T ss_dssp             CSSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CccCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence            4577788877664 599999999999999999977764

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.45  E-value=0.044  Score=33.38  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=29.3

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          140 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       140 eDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      +-|.-.++=||||++.|+.-|..+++||=.||-
T Consensus         7 ~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~   39 (46)
T d1v92a_           7 DALREFVAVTGAEEDRARFFLESAGWDLQIALA   39 (46)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHH
Confidence            356777889999999999999999999988874

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.80  E-value=0.066  Score=34.64  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=29.2

Q ss_pred             CCCCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484          135 TGVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  171 (176)
Q Consensus       135 ~~~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai  171 (176)
                      .+++++-|.-++ .-|.|++.|++||+.++| |+=.|+
T Consensus         6 s~~d~~~l~~L~-~MGF~~~~a~~AL~~t~n~~~e~A~   42 (64)
T d1whca_           6 SGAELTALESLI-EMGFPRGRAEKALALTGNQGIEAAM   42 (64)
T ss_dssp             CCCCCCHHHHHH-TTTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CccCHHHHHHHH-HcCCCHHHHHHHHHHhCCCCHHHHH
Confidence            456777787777 489999999999999977 776664

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.69  E-value=0.059  Score=35.74  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=29.9

Q ss_pred             CCCcccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          136 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       136 ~~~eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      .++++.|+-++ ..|.+|+.|++||+.++|||=.||=
T Consensus        27 ~~~ee~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~~   62 (73)
T d1vg5a_          27 AASEEQIQKLV-AMGFDRTQVEVALAAADDDLTVAVE   62 (73)
T ss_dssp             CCCHHHHHHHH-TTTCCHHHHHHHHHHHTSCHHHHHH
T ss_pred             CcCHHHHHHHH-HhCCCHHHHHHHHHHhCCCHHHHHH
Confidence            45788888866 4799999999999999999876653

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.17  Score=31.39  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=27.3

Q ss_pred             CCcccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484          137 VEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  171 (176)
Q Consensus       137 ~~eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai  171 (176)
                      .++..|..+++ -|.|++.|++||+.++| ||=.|+
T Consensus        11 ~~~~~l~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~   45 (51)
T d2cpwa1          11 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC   45 (51)
T ss_dssp             SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHHCCCCHHHHH
Confidence            45667887775 89999999999999877 875554

>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: DsbC/DsbG N-terminal domain-like
family: DsbC/DsbG N-terminal domain-like
domain: Disulfide bond isomerase, DsbC, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.09  E-value=0.75  Score=28.99  Aligned_cols=44  Identities=18%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHcCCc-------ccCCceEEEEEecCeEEEEecCCeEEecCCCCeEEEeccc
Q 030484           37 SEKKSRKAMLKLGMK-------PIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA   91 (176)
Q Consensus        37 ~eKK~rk~LkKLGlk-------~I~gV~rV~I~k~~~~~fvI~~PeV~k~~gs~tyvVfGe~   91 (176)
                      +|..+++.|.++|++       +++|.-+|++  +++ +|       |-+. ...|+|.|+.
T Consensus         1 dea~i~~~L~~~~~~v~sV~~spi~GlyeV~~--~~~-i~-------Yvs~-dG~y~i~G~l   51 (60)
T d1eeja2           1 DDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG-VL-------YITD-DGKHIIQGPM   51 (60)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE-EE-------EEET-TSCEEEESCE
T ss_pred             CHHHHHHHHHhcCCceeEEecCCCCCeEEEEE--CCE-EE-------EEcC-CCCEEEEeEE
Confidence            366788999999988       6899988876  344 33       4333 3357777754

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.03  E-value=0.24  Score=31.77  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=25.5

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHh
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM  172 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~GDiv~Ai~  172 (176)
                      ++-|+.++ .-|.+|+.|++||+.++||+=.|+-
T Consensus        20 e~~v~~L~-~MGF~~~~a~~AL~~~~~n~e~A~~   52 (63)
T d1wgna_          20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQILD   52 (63)
T ss_dssp             HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHH
Confidence            44455554 4699999999999999999766653

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=0.45  Score=29.20  Aligned_cols=32  Identities=28%  Similarity=0.357  Sum_probs=24.0

Q ss_pred             cccHHHHHHHhCCCHHHHHHHHHHcCC-cHHHHH
Q 030484          139 PKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI  171 (176)
Q Consensus       139 eeDIeLVmeQagvSr~kAikALke~~G-Div~Ai  171 (176)
                      ++-|..++ .-|.|++.|++||+.++| ++=.|+
T Consensus         3 p~~v~~L~-~MGF~~~~a~~Al~~t~n~~ve~A~   35 (51)
T d2crna1           3 PSLLEPLL-AMGFPVHTALKALAATGRKTAEEAL   35 (51)
T ss_dssp             CSSHHHHH-HTSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHHCCCCHHHHH
Confidence            44555555 579999999999999854 876664

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.53  E-value=0.24  Score=29.26  Aligned_cols=28  Identities=29%  Similarity=0.413  Sum_probs=23.5

Q ss_pred             HHHhCCCHHHHHHHHHHcCCcHHHHHhh
Q 030484          146 MTQAGVSRAKAVKALKAADGDIVSAIME  173 (176)
Q Consensus       146 meQagvSr~kAikALke~~GDiv~Ai~~  173 (176)
                      +.++||+.+-+++||+.+++--++|-++
T Consensus         9 l~~aG~D~~m~iral~qt~~rsieaaie   36 (41)
T d2cosa1           9 LVNAGCDQEMAGRALKQTGSRSIEAALE   36 (41)
T ss_dssp             HHHHHCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHhCcccHHHHHH
Confidence            4589999999999999998877776554