Citrus Sinensis ID: 030558
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 175 | 2.2.26 [Sep-21-2011] | |||||||
| Q9H867 | 229 | Protein-lysine methyltran | no | no | 0.508 | 0.388 | 0.31 | 0.0008 | |
| P0CP44 | 299 | Putative nicotinamide N-m | no | no | 0.6 | 0.351 | 0.268 | 0.0008 | |
| P0CP45 | 299 | Putative nicotinamide N-m | N/A | no | 0.6 | 0.351 | 0.268 | 0.0008 |
| >sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHI 64
+ RR +ELGSGTGA+ + + + D+ +D +E++D + N N +T ++
Sbjct: 66 LSRRSVLELGSGTGAVGL-MAATLGADVVVTDL--EELQDLLKMNINMNKHLVTGSVQAK 122
Query: 65 KHSWG---DAFPIPNPDWDLILASDILLYVKQYSNLIKSL 101
WG + FP P PD+ IL +D + Y + L+K+L
Sbjct: 123 VLKWGEEIEGFPSP-PDF--ILMADCIYYEESLEPLLKTL 159
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P0CP44|NNT1_CRYNJ Putative nicotinamide N-methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NNT1 PE=3 SV=1 | Back alignment and function description |
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Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-- 65
+ R +ELG+G G +I A + + +DY+D+ + DN+ +N N I
Sbjct: 92 QSRHVLELGAGAGLPSIVCVLAGSSKVIVTDYSDEGLLDNLRFNVDVNLEGEEKERIAVD 151
Query: 66 -HSWGDAF-PI-----PNPDWDLILASDILLYVKQYSNLIKSLSVLL-----KSYKPKD 112
H WG + P+ +DL++ SD++ Q+ LIK++ L +SY P +
Sbjct: 152 GHVWGQSVDPLLGHLPKGQKYDLLILSDLVFNHSQHDALIKTVEATLTSSSTQSYDPSN 210
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Putative nicotinamide N-methyltransferase involved in rDNA silencing and in lifespan determination. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P0CP45|NNT1_CRYNB Putative nicotinamide N-methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NNT1 PE=3 SV=1 | Back alignment and function description |
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Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-- 65
+ R +ELG+G G +I A + + +DY+D+ + DN+ +N N I
Sbjct: 92 QSRHVLELGAGAGLPSIVCVLAGSSKVIVTDYSDEGLLDNLRFNVDVNLEGEEKERIAVD 151
Query: 66 -HSWGDAF-PI-----PNPDWDLILASDILLYVKQYSNLIKSLSVLL-----KSYKPKD 112
H WG + P+ +DL++ SD++ Q+ LIK++ L +SY P +
Sbjct: 152 GHVWGQSVDPLLGHLPKGQKYDLLILSDLVFNHSQHDALIKTVEATLTSSSTQSYDPSN 210
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Putative nicotinamide N-methyltransferase involved in rDNA silencing and in lifespan determination. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 175 | ||||||
| 297740209 | 262 | unnamed protein product [Vitis vinifera] | 1.0 | 0.667 | 0.75 | 2e-72 | |
| 255574371 | 245 | conserved hypothetical protein [Ricinus | 0.965 | 0.689 | 0.758 | 3e-69 | |
| 359482055 | 247 | PREDICTED: methyltransferase-like protei | 0.92 | 0.651 | 0.731 | 6e-69 | |
| 224090998 | 257 | predicted protein [Populus trichocarpa] | 0.982 | 0.669 | 0.712 | 9e-69 | |
| 18413626 | 241 | S-adenosyl-L-methionine-dependent methyl | 0.965 | 0.701 | 0.714 | 2e-67 | |
| 145334277 | 245 | S-adenosyl-L-methionine-dependent methyl | 0.988 | 0.706 | 0.72 | 6e-67 | |
| 186519142 | 239 | S-adenosyl-L-methionine-dependent methyl | 0.954 | 0.698 | 0.714 | 2e-66 | |
| 297810255 | 245 | hypothetical protein ARALYDRAFT_486928 [ | 0.988 | 0.706 | 0.708 | 3e-66 | |
| 357468321 | 269 | hypothetical protein MTR_4g012440 [Medic | 0.977 | 0.635 | 0.703 | 1e-64 | |
| 449461775 | 244 | PREDICTED: methyltransferase-like protei | 0.965 | 0.692 | 0.68 | 6e-64 |
| >gi|297740209|emb|CBI30391.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/176 (75%), Positives = 146/176 (82%), Gaps = 1/176 (0%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR WIE RR ELGSGTGALAIFLRK+ LDITTSDYNDQEIE+NIAYN NGITP
Sbjct: 70 VQHRSWIEGRRSFELGSGTGALAIFLRKSFQLDITTSDYNDQEIEENIAYNCRVNGITPI 129
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKHSWGD FPI +PDWDLI+ASDILLYVKQY NLIK+LS LLK YKPKD + +
Sbjct: 130 LPHIKHSWGDNFPIADPDWDLIIASDILLYVKQYPNLIKTLSFLLKFYKPKDDSAISIME 189
Query: 121 NE-QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKLR 175
NE + E EGLP PAFLMSWRRRIGKEDE++FFT C+NAGLEVKH+GSRV+CI R
Sbjct: 190 NEHKNETYEGLPQPAFLMSWRRRIGKEDESLFFTGCKNAGLEVKHMGSRVFCITPR 245
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574371|ref|XP_002528099.1| conserved hypothetical protein [Ricinus communis] gi|223532488|gb|EEF34278.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/174 (75%), Positives = 145/174 (83%), Gaps = 5/174 (2%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR IE RRCIELGSGTGALAIFLRK+ NLDITTSDYNDQEIE+NIA+N N ITPA
Sbjct: 72 VEHRLDIEGRRCIELGSGTGALAIFLRKSFNLDITTSDYNDQEIEENIAHNCRVNEITPA 131
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKHSWGD FP +PDWDL++ASDILLYVKQY NLIK+LS LLKSYKP + +
Sbjct: 132 LPHIKHSWGDTFPSADPDWDLVIASDILLYVKQYPNLIKTLSFLLKSYKPDKA----VAA 187
Query: 121 NEQGEGT-EGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIK 173
+EQ GT GLP PAFLMSWRRRIGKEDE+ FFT CE+AGLEVKHLGSRVYCIK
Sbjct: 188 SEQNGGTYMGLPRPAFLMSWRRRIGKEDESFFFTGCEDAGLEVKHLGSRVYCIK 241
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482055|ref|XP_002274825.2| PREDICTED: methyltransferase-like protein 21C-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 139/175 (79%), Gaps = 14/175 (8%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR WIE RR ELGSGTGALAIFLRK+ LDITTSDYNDQEIE+NIAYN NGITP
Sbjct: 70 VQHRSWIEGRRSFELGSGTGALAIFLRKSFQLDITTSDYNDQEIEENIAYNCRVNGITPI 129
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKHSWGD FPI +PDWDLI+ASDILLYVKQY NLIK+LS LLK YKPKD
Sbjct: 130 LPHIKHSWGDNFPIADPDWDLIIASDILLYVKQYPNLIKTLSFLLKFYKPKDDS------ 183
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKLR 175
GLP PAFLMSWRRRIGKEDE++FFT C+NAGLEVKH+GSRV+CI R
Sbjct: 184 --------GLPQPAFLMSWRRRIGKEDESLFFTGCKNAGLEVKHMGSRVFCITPR 230
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090998|ref|XP_002309139.1| predicted protein [Populus trichocarpa] gi|222855115|gb|EEE92662.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 146/174 (83%), Gaps = 2/174 (1%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ +R +E R CIELGSGTGALAIFLRK+ +LDITTSDYNDQEIE+NIA+N NG+TP
Sbjct: 69 VQNRPLVEGRHCIELGSGTGALAIFLRKSFHLDITTSDYNDQEIEENIAHNCRVNGVTPV 128
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHI+HSWGD FP +PDWDL++ASDILLYVKQY NLIK+LS LLKSYK K+ + G + +
Sbjct: 129 LPHIRHSWGDTFPAADPDWDLVIASDILLYVKQYPNLIKTLSFLLKSYKLKNDRAGSIME 188
Query: 121 NEQGEGTE--GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCI 172
NEQ GT GLP PAFLMSWRRRIGKEDE++FF CE+AGL+V+HLGSRVYCI
Sbjct: 189 NEQNGGTHNIGLPRPAFLMSWRRRIGKEDESLFFDGCESAGLQVEHLGSRVYCI 242
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18413626|ref|NP_568090.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] gi|21554308|gb|AAM63413.1| unknown [Arabidopsis thaliana] gi|92856600|gb|ABE77406.1| At5g01470 [Arabidopsis thaliana] gi|332002965|gb|AED90348.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/175 (71%), Positives = 141/175 (80%), Gaps = 6/175 (3%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N N I P+
Sbjct: 69 LQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHNCIANKIIPS 128
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP + +
Sbjct: 129 LPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPTN-----VVS 183
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKLR 175
+G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYCIKLR
Sbjct: 184 PAEGADTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYCIKLR 237
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145334277|ref|NP_001078520.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] gi|332002966|gb|AED90349.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 126/175 (72%), Positives = 140/175 (80%), Gaps = 2/175 (1%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N N I P+
Sbjct: 69 LQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHNCIANKIIPS 128
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP + V
Sbjct: 129 LPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPTNV-VSPAEG 187
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKLR 175
G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYCIKLR
Sbjct: 188 KLNGADTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYCIKLR 241
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186519142|ref|NP_001119149.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] gi|332002967|gb|AED90350.1| S-adenosyl-L-methionine-dependent methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/175 (71%), Positives = 139/175 (79%), Gaps = 8/175 (4%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N N I P+
Sbjct: 69 LQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHNCIANKIIPS 128
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP +
Sbjct: 129 LPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPTNVV------ 182
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKLR 175
E TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYCIKLR
Sbjct: 183 -SPAEDTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYCIKLR 235
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810255|ref|XP_002873011.1| hypothetical protein ARALYDRAFT_486928 [Arabidopsis lyrata subsp. lyrata] gi|297318848|gb|EFH49270.1| hypothetical protein ARALYDRAFT_486928 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/175 (70%), Positives = 141/175 (80%), Gaps = 2/175 (1%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR I+RRRC+E+GSGTGALAIFL+K +LDITTSDYNDQEIEDNI +N N I P+
Sbjct: 69 VQHRHLIQRRRCLEIGSGTGALAIFLKKEFDLDITTSDYNDQEIEDNIVHNCIANKIIPS 128
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK+YKP + V
Sbjct: 129 LPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKTYKPTNV-VSPAEC 187
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKLR 175
G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYCIKLR
Sbjct: 188 KLNGADTE-LPHPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYCIKLR 241
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468321|ref|XP_003604445.1| hypothetical protein MTR_4g012440 [Medicago truncatula] gi|355505500|gb|AES86642.1| hypothetical protein MTR_4g012440 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/172 (70%), Positives = 138/172 (80%), Gaps = 1/172 (0%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR IE RR IELGSGTGALAIFLRK+ NLDITTSDY+DQEI +NIA+N N + P
Sbjct: 74 VQHRSCIEGRRTIELGSGTGALAIFLRKSYNLDITTSDYDDQEIMENIAHNCGANDL-PV 132
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
+PHIKH+WGD FP +PDWDLI+ASDILLYVKQY NLI+++S LLKSYK D T
Sbjct: 133 IPHIKHTWGDKFPNSDPDWDLIIASDILLYVKQYPNLIQTISFLLKSYKHGDRTTVSPTG 192
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCI 172
N++ G LPWPAFLMSWRRRIGKEDE+IFF CENAGLEVKH+GSRVYCI
Sbjct: 193 NDETHGDVVLPWPAFLMSWRRRIGKEDESIFFNGCENAGLEVKHIGSRVYCI 244
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461775|ref|XP_004148617.1| PREDICTED: methyltransferase-like protein 21B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 248 bits (634), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 119/175 (68%), Positives = 139/175 (79%), Gaps = 6/175 (3%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ + WI+ RCIELGSGTG+LAIFLRK+ +LDITTSDY+DQEIE+NIAYN NGITPA
Sbjct: 71 VQNSSWIQGHRCIELGSGTGSLAIFLRKSFDLDITTSDYDDQEIEENIAYNCRVNGITPA 130
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPH+KH+WGD+FPI +PDWDL++ASDILLYVKQY NLIK+LS LLK K + + +
Sbjct: 131 LPHVKHTWGDSFPISDPDWDLVIASDILLYVKQYPNLIKTLSYLLKRNYSKTTSLSAIGN 190
Query: 121 NEQGEGTEGLPW--PAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIK 173
+E G P P FLMSWRRRIGKEDE +FF CENAGLEVKHLGSRVYCIK
Sbjct: 191 DEAA----GAPMAKPMFLMSWRRRIGKEDELLFFNGCENAGLEVKHLGSRVYCIK 241
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 175 | ||||||
| TAIR|locus:2179202 | 245 | AT5G01470 "AT5G01470" [Arabido | 0.988 | 0.706 | 0.72 | 2.9e-64 | |
| TAIR|locus:2078002 | 251 | AT3G50850 "AT3G50850" [Arabido | 0.52 | 0.362 | 0.31 | 4.8e-05 | |
| UNIPROTKB|Q9H867 | 229 | METTL21D "Protein-lysine methy | 0.52 | 0.397 | 0.295 | 9.6e-05 | |
| RGD|1306228 | 274 | Mettl21d "methyltransferase li | 0.531 | 0.339 | 0.297 | 0.00038 | |
| UNIPROTKB|Q58DC7 | 290 | METTL21E "Protein-lysine methy | 0.434 | 0.262 | 0.348 | 0.00059 | |
| MGI|MGI:2684917 | 228 | Mettl21d "methyltransferase li | 0.531 | 0.407 | 0.297 | 0.00062 |
| TAIR|locus:2179202 AT5G01470 "AT5G01470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 126/175 (72%), Positives = 140/175 (80%)
Query: 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA 60
+ HR IERRRC+E+GSGTGALAIFL+K NLDITTSDYNDQEIEDNI +N N I P+
Sbjct: 69 LQHRYLIERRRCLEIGSGTGALAIFLKKEFNLDITTSDYNDQEIEDNIVHNCIANKIIPS 128
Query: 61 LPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
LPHIKH+WGD FPI PDWDLI+ASDILLYVKQY NLIKSL+ LLK YKP + V
Sbjct: 129 LPHIKHTWGDEFPISEPDWDLIIASDILLYVKQYPNLIKSLTFLLKKYKPTNV-VSPAEG 187
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKLR 175
G TE LP P FLMSWRRRIGK+DE++FFT CE AGLEVKHLG+RVYCIKLR
Sbjct: 188 KLNGADTE-LPRPVFLMSWRRRIGKDDESLFFTGCEEAGLEVKHLGNRVYCIKLR 241
|
|
| TAIR|locus:2078002 AT3G50850 "AT3G50850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 13 IELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL----PHIKH-S 67
+ELGSGTG + I + ++T +D + + +N+ +N+ N A H+
Sbjct: 93 VELGSGTGIVGIAAAATLGANVTVTDLPN--VIENLKFNADANAQVVAKFGGKVHVASLR 150
Query: 68 WGDAFPIPN--PDWDLILASDILLYVKQYSNLIKSLSVLL 105
WG+ + + + DLILASD++ +V Y L+K+L LL
Sbjct: 151 WGEIDDVESLGQNVDLILASDVVYHVHLYEPLLKTLRFLL 190
|
|
| UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHI 64
+ RR +ELGSGTGA+ + + + D+ +D +E++D + N N +T ++
Sbjct: 66 LSRRSVLELGSGTGAVGL-MAATLGADVVVTDL--EELQDLLKMNINMNKHLVTGSVQAK 122
Query: 65 KHSWGDAFP-IPNPDWDLILASDILLYVKQYSNLIKSL 101
WG+ P+P D IL +D + Y + L+K+L
Sbjct: 123 VLKWGEEIEGFPSPP-DFILMADCIYYEESLEPLLKTL 159
|
|
| RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00038, P = 0.00038
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHI 64
+ RR +ELGSGTGA+ + + + D+ +D +E++D + N N +T ++
Sbjct: 112 LSRRSVLELGSGTGAVGL-MAATLGADVIVTDL--EELQDLLKMNINMNKHLVTGSVQAK 168
Query: 65 KHSWGDAFP-IPNPDWDLILASDILLYVKQYSNLIKSLSVL 104
WGD + +PD+ IL +D + Y + L+K+L L
Sbjct: 169 VLKWGDDIEDLMSPDY--ILMADCIYYEESLEPLLKTLKDL 207
|
|
| UNIPROTKB|Q58DC7 METTL21E "Protein-lysine methyltransferase METTL21E" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 106 (42.4 bits), Expect = 0.00059, P = 0.00059
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA--LPHIKH- 66
+ IE+G+GTG ++I + + +T +D E+ N+ YN + N T A LP +K
Sbjct: 118 KNVIEIGAGTGLVSI-VASLLGAHVTATDL--PELLGNLQYNISRNTKTKAKHLPQVKEL 174
Query: 67 SWGDA----FPIPNPDWDLILASDIL 88
SWG A FP + ++D ILA+D++
Sbjct: 175 SWGVALDKNFPRASINFDYILAADVV 200
|
|
| MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 104 (41.7 bits), Expect = 0.00062, P = 0.00062
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHI 64
+ RR +ELGSGTGA+ + + + D+ +D +E++D + N N +T ++
Sbjct: 66 LSRRSVLELGSGTGAVGL-MAATLGADVIVTDL--EELQDLLKMNIDMNKHLVTGSVQAK 122
Query: 65 KHSWG-DAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVL 104
WG D + +PD+ IL +D + Y + L+K+L L
Sbjct: 123 VLKWGEDIEDLMSPDY--ILMADCIYYEESLEPLLKTLKDL 161
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 175 175 0.00078 109 3 11 22 0.42 32
31 0.49 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 606 (64 KB)
Total size of DFA: 179 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.49u 0.10s 17.59t Elapsed: 00:00:01
Total cpu time: 17.49u 0.10s 17.59t Elapsed: 00:00:01
Start: Sat May 11 05:44:45 2013 End: Sat May 11 05:44:46 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 175 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 9e-09 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 1e-08 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 9e-04 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.001 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-09
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 38/156 (24%)
Query: 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQE--IEDNIAYNSTTNGITP-ALPH 63
+ELGSGTG + I + + +T +D + ++ NI N ++ +T L
Sbjct: 44 SGLNVLELGSGTGLVGIAVALLLPGASVTITDLEEAIELMKKNIELNGLSSKVTAKVL-- 101
Query: 64 IKHSWGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120
WG+ P DLILA+D + + L K+L L
Sbjct: 102 ---DWGEDLPDDVFDPHPVDLILAADCVYNEDSFPLLEKTL--------------NDLLG 144
Query: 121 NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 156
E L+++++R +E E FF E
Sbjct: 145 KE----------TVILVAYKKR--REAEKRFFKLLE 168
|
Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALP 62
H E + +R ++LG+G+G +AI +A ++ +D D +E I N+ NG++
Sbjct: 74 HPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADI-DPWLEQAIRLNAAANGVSILFT 132
Query: 63 HIKHSWGDAFPI-PNPDWDLILASDI 87
H I P +DL+LA D+
Sbjct: 133 HAD-------LIGSPPAFDLLLAGDL 151
|
Length = 218 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 9e-04
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIE---DNIAYNSTTNGITPALPHIK 65
+R ++LG+G+GA+AI L K + ++ D + + +N N L +
Sbjct: 112 KRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN--------GLVRVL 163
Query: 66 HSWGDAFPIPNPDWDLILA 84
D F +DLI++
Sbjct: 164 VVQSDLFEPLRGKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.001
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 13 IELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 71
+++G GTG L L +A+ L+ T D + +E + + + DA
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDV--LDA 58
Query: 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLK 106
+ +D+++AS++L ++ ++++L LLK
Sbjct: 59 IDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLK 93
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 175 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.86 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.85 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.85 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.84 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.83 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.83 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.82 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.82 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.82 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.81 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.8 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.8 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.79 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.78 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.78 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.78 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.77 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.77 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.77 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.76 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.75 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.75 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.74 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.73 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.73 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.73 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.72 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.72 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.71 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.71 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.7 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.7 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.7 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.7 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.69 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.69 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.69 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.69 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.69 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.69 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.68 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.68 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.68 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.67 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.67 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.67 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.67 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.67 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.66 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.66 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.66 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.65 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.65 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.65 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.65 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.65 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.64 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.64 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.63 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.63 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.63 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.63 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.62 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.62 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.62 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.61 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.6 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.59 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.59 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.59 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.58 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.58 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.58 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.57 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.57 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.57 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.56 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.55 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.55 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.55 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.54 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.54 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.54 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.53 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.52 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.51 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.51 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.5 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.5 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.5 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.5 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.49 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.49 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.47 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.47 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.45 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.45 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.45 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.44 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.44 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.44 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.42 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.42 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.41 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.41 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.41 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.39 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.38 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.37 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.36 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.36 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.36 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.35 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.35 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.35 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.34 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.34 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.34 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.34 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.33 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.33 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.33 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.32 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.32 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.32 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.32 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.3 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.28 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.28 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.27 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.27 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.27 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.24 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.24 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.23 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.23 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.22 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.22 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.22 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.22 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.2 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.19 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.17 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.17 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.17 | |
| PLN02476 | 278 | O-methyltransferase | 99.15 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.15 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.13 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.12 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.11 | |
| PLN02366 | 308 | spermidine synthase | 99.11 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.06 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.05 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.04 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.04 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.02 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.98 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.97 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.94 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.94 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.93 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.92 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.91 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.9 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.9 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.89 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.89 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.88 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.88 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.87 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.86 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.84 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.84 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.83 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.82 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 98.82 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.8 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.79 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.79 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.79 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.77 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.75 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.74 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.73 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.72 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.71 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.69 | |
| PLN02823 | 336 | spermine synthase | 98.66 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.64 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.63 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.62 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.58 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.58 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.56 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.55 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.54 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.54 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.48 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.47 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.47 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.47 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.47 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.46 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.46 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.45 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.43 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.41 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.4 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.4 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.38 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.37 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.36 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.36 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.33 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.29 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.23 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.23 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.2 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.17 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.15 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.14 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.13 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.12 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 98.03 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.96 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.89 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.87 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.86 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.81 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.78 | |
| PHA01634 | 156 | hypothetical protein | 97.77 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.77 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.76 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.76 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.75 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.75 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.73 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.73 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.73 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.7 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.67 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.65 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.61 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.58 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.56 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.53 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.39 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.38 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.37 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.31 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.29 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.26 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 97.2 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.14 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.05 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.01 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.98 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.86 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.78 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.76 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.7 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.67 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.66 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.57 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.56 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.55 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.54 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.52 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.51 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.45 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.35 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.34 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.32 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 96.28 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.27 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.21 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 96.17 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.01 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.91 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.88 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.76 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.7 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.64 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.6 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.6 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.58 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.54 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.53 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.37 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.26 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.23 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.13 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.06 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.96 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.93 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.89 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.76 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.65 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 94.62 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.61 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.53 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.53 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.51 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 94.42 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.38 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.37 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 94.35 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.11 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.0 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 93.9 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.64 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 93.63 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 93.58 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.5 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 93.15 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 93.09 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.06 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 92.99 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 92.85 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 92.76 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 92.7 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 92.56 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 92.39 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 92.34 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 92.32 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 92.32 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 92.29 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 92.24 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 92.23 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 92.19 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 92.18 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.86 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 91.75 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 91.66 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 91.66 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 91.64 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.62 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 91.56 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 91.55 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 91.37 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 91.32 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 91.31 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 91.28 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.17 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 91.14 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 91.04 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.82 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 90.64 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 90.53 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 90.52 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 90.46 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 90.39 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 90.36 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 90.34 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 90.25 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.09 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 90.02 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 90.0 | |
| PLN02494 | 477 | adenosylhomocysteinase | 89.95 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 89.87 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 89.55 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.35 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 89.28 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 89.11 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 89.07 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 88.97 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 88.66 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 88.27 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 88.22 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.96 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 87.85 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 87.83 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 87.75 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 87.24 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 87.14 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 86.99 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 86.94 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 86.79 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 86.76 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 86.7 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 86.26 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 85.93 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 85.91 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 85.59 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 85.25 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.04 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 85.01 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 84.87 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.74 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 84.62 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 84.61 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 84.43 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 84.39 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 84.15 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 83.97 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.88 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 83.87 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.73 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.58 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 83.17 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.0 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.87 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 82.87 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 82.76 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 82.58 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 82.4 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 82.12 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 82.12 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 82.04 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 81.93 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 81.92 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.89 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 81.88 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 81.85 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 81.75 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 81.74 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 81.23 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 81.14 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 81.14 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 81.07 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 81.02 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 80.77 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 80.22 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 80.21 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=139.85 Aligned_cols=149 Identities=18% Similarity=0.261 Sum_probs=104.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+|.+|||+|||||..++.+++.. ..+|+++|+|+.|| +.+++.....+... +..+ ...+..+|+++++||+|.++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv-~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFV-VGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEE-EechhhCCCCCCccCEEEeee
Confidence 78999999999999999998875 35799999999999 66666665544422 2222 223457889999999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC------------------CCCCCCCCc---eEeeeeccCCC
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------------------GTEGLPWPA---FLMSWRRRIGK 145 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~------------------~~~~~~~~~---~~~~~~~~~~~ 145 (175)
.+.+.. +...+|+|++|+|||||++++......... ..+....+. ++....+.+.
T Consensus 128 glrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p- 203 (238)
T COG2226 128 GLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP- 203 (238)
T ss_pred hhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC-
Confidence 996665 445999999999999998888743332211 111110110 1111122222
Q ss_pred cchhHHHHHHHHcCCeeEE
Q 030558 146 EDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 146 ~~~~~~~~~~~~~g~~~~~ 164 (175)
+.+++.+.++++||....
T Consensus 204 -~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 204 -DQEELKQMIEKAGFEEVR 221 (238)
T ss_pred -CHHHHHHHHHhcCceEEe
Confidence 258899999999998665
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-21 Score=144.50 Aligned_cols=159 Identities=15% Similarity=0.152 Sum_probs=105.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++. +.+|+|+|+++.++ +.++++.........+..+..+. +.+++.+++||+|++.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhh
Confidence 46789999999999999999875 88999999999998 66665544433212222222221 23445567999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCC-CCC-ceEeee-eccCCCcchhHHHHHHHHcCCe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGL-PWP-AFLMSW-RRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+++|..+ ...+++++.++|||||.+++.+....... ..... ..- .+.... ..+....+..++.++++++||+
T Consensus 207 vLeHv~d---~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 207 VIEHVAN---PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HHHhcCC---HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9966664 44999999999999999999854432100 00000 000 000000 0111122468999999999999
Q ss_pred eEEecceEEE
Q 030558 162 VKHLGSRVYC 171 (175)
Q Consensus 162 ~~~~~~~~~~ 171 (175)
+.++....|-
T Consensus 284 i~~~~G~~~~ 293 (322)
T PLN02396 284 VKEMAGFVYN 293 (322)
T ss_pred EEEEeeeEEc
Confidence 9999777764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=140.71 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=74.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+|.+|||+|||||.++..+++..+ .+|+++|+|+.|+ +.++++....+.. ++..+. .....+|+++++||+|+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~-~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQ-GDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE--BTTB--S-TT-EEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEE-cCHHHhcCCCCceeEEE
Confidence 45688999999999999999988653 5799999999999 7777666665542 233332 22356788899999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC-----------------CCCCCCCC---CceEeeeeccC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG-----------------EGTEGLPW---PAFLMSWRRRI 143 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~ 143 (175)
++..+.+.+ ++.++++|++|+|||||++++......+. ...+..+. ..++....+.+
T Consensus 122 ~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f 198 (233)
T PF01209_consen 122 CSFGLRNFP---DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRF 198 (233)
T ss_dssp EES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------
T ss_pred HHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccc
Confidence 999884444 56699999999999999999883333221 01111111 11222222223
Q ss_pred CCcchhHHHHHHHHcCCeeEEe
Q 030558 144 GKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.. .+++.++++++||+..+.
T Consensus 199 ~~--~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 199 PS--PEELKELLEEAGFKNVEY 218 (233)
T ss_dssp ----------------------
T ss_pred cc--cccccccccccccccccc
Confidence 22 588999999999985544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=141.11 Aligned_cols=156 Identities=11% Similarity=0.098 Sum_probs=106.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||||||+|.++..+++..+.+|+|+|+|+.|+ +.++++....+...++..+..+. ..+++.+++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 46789999999999999999987788999999999998 66666666555533344443333 23567788999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC---CCCCCCCCceE----ee-eeccCCCcchhHHHHHHHHc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLPWPAFL----MS-WRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~---~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~ 158 (175)
+++|.. +...++++++++|||||++++......... ..........+ .. +...+ .+..++.++++++
T Consensus 195 ~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~--~s~~~~~~~l~~a 269 (340)
T PLN02244 195 SGEHMP---DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAW--CSTSDYVKLAESL 269 (340)
T ss_pred chhccC---CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCC--CCHHHHHHHHHHC
Confidence 986655 455999999999999999999754332111 11100000000 00 01111 1358999999999
Q ss_pred CCeeEEecceE
Q 030558 159 GLEVKHLGSRV 169 (175)
Q Consensus 159 g~~~~~~~~~~ 169 (175)
||+..+..+..
T Consensus 270 Gf~~v~~~d~s 280 (340)
T PLN02244 270 GLQDIKTEDWS 280 (340)
T ss_pred CCCeeEeeeCc
Confidence 99987776543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=119.97 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=83.3
Q ss_pred CCCcEEEeCCCccHHHHHHHH-hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~-~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++++|||||||+|.++..+++ ..+.+|+++|+|+.++ +.++++........++..+..+. .......+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 578999999999999999988 3588999999999998 77777775555555566555544 22233345799999998
Q ss_pred -cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 -ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 -~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.+....++..++++++.+.|+|||++++.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4432333467789999999999999998875
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-20 Score=136.16 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=102.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|..+..+++. +.+|+++|+|+.|+ +.++++....+...++..+..+..+..+..+++||+|+++.+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4679999999999999999887 78999999999998 677777666555333344433333322345679999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCC----ceE----eeeeccCCCcchhHHHHHHHH
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWP----AFL----MSWRRRIGKEDETIFFTSCEN 157 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~ 157 (175)
+++.. ++..+++++.++|||||.+++..+...... ..+...+. ... ......+ ..+.+++.+++++
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~l~~~l~~ 197 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY-PLDPEQVYQWLEE 197 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC-CCCHHHHHHHHHH
Confidence 95554 345899999999999999988744432110 00000000 000 0000111 1245889999999
Q ss_pred cCCeeEEecc
Q 030558 158 AGLEVKHLGS 167 (175)
Q Consensus 158 ~g~~~~~~~~ 167 (175)
+||++++...
T Consensus 198 aGf~~~~~~g 207 (255)
T PRK11036 198 AGWQIMGKTG 207 (255)
T ss_pred CCCeEeeeee
Confidence 9999876543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-20 Score=136.60 Aligned_cols=155 Identities=11% Similarity=-0.030 Sum_probs=96.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++++|||+|||+|.++..++......|+|+|+|+.|+. .++...........+.....+.. .++. .++||+|++
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~-q~~~~~~~~~~~~~v~~~~~~ie-~lp~-~~~FD~V~s 194 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLC-QFEAVRKLLDNDKRAILEPLGIE-QLHE-LYAFDTVFS 194 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHHHHHhccCCCeEEEECCHH-HCCC-CCCcCEEEE
Confidence 45678999999999999999988874457999999999873 32211111111112222222222 2232 348999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..+++|..+ +..++++++++|+|||.+++.+............+... .......+...+...+.++++++||+..+
T Consensus 195 ~gvL~H~~d---p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r-y~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 195 MGVLYHRKS---PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR-YAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred cchhhccCC---HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH-HHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 999977654 44899999999999999998743322111111000000 00011111122468899999999999776
Q ss_pred ec
Q 030558 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 271 i~ 272 (314)
T TIGR00452 271 IL 272 (314)
T ss_pred EE
Confidence 54
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=136.22 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=96.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||||||+|.++..++..+...|+|+|+|+.++.+ .+...........+..+..+. +.+++ +++||+|++.
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q-~~a~~~~~~~~~~i~~~~~d~-e~lp~-~~~FD~V~s~ 196 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ-FEAVRKLLGNDQRAHLLPLGI-EQLPA-LKAFDTVFSM 196 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH-HHHHHHhcCCCCCeEEEeCCH-HHCCC-cCCcCEEEEC
Confidence 45789999999999999999988855569999999988732 221111111111233333322 23444 6789999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.+++|..+ +..+++++++.|+|||.+++..............+... +......+...+...+.++++++||+..++
T Consensus 197 ~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~-y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 197 GVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDR-YAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhH-HhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 99976654 45899999999999999988632211111000000000 001111111224689999999999997766
Q ss_pred c
Q 030558 166 G 166 (175)
Q Consensus 166 ~ 166 (175)
.
T Consensus 273 ~ 273 (322)
T PRK15068 273 V 273 (322)
T ss_pred E
Confidence 4
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=133.40 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=104.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+|.+|||+|||-|.++..+|+. |.+|+|+|+++.+| +.++.....++... ....... +++....++||+|++..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I-~~Ak~ha~e~gv~i--~y~~~~~-edl~~~~~~FDvV~cmE 132 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPI-EVAKLHALESGVNI--DYRQATV-EDLASAGGQFDVVTCME 132 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHH-HHHHHhhhhccccc--cchhhhH-HHHHhcCCCccEEEEhh
Confidence 58899999999999999999998 89999999999998 88887777777731 1111111 12222337999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
++.|.+ +...+++.+.+.+||||.+++++....... .++...+-.-...-.+.+-. ++++...+..++
T Consensus 133 VlEHv~---dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~ir--p~El~~~~~~~~ 207 (243)
T COG2227 133 VLEHVP---DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIK--PAELIRWLLGAN 207 (243)
T ss_pred HHHccC---CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcC--HHHHHHhcccCC
Confidence 995554 455899999999999999999865542211 01000000000000011111 477778888889
Q ss_pred CeeEEecceEEE
Q 030558 160 LEVKHLGSRVYC 171 (175)
Q Consensus 160 ~~~~~~~~~~~~ 171 (175)
+++.+.....|.
T Consensus 208 ~~~~~~~g~~y~ 219 (243)
T COG2227 208 LKIIDRKGLTYN 219 (243)
T ss_pred ceEEeecceEec
Confidence 999888777663
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-20 Score=135.02 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=102.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||||||+|..+..+++..+.+|+++|+|+.++ +.++.+... ...+..+..+.. ..++++++||+|++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~-~~~~~~~~FD~V~s 123 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDIL-KKDFPENTFDMIYS 123 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcc-cCCCCCCCeEEEEE
Confidence 3457889999999999999999876678999999999998 555544322 112233322222 34566789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEee-eeccCCCcchhHHHHHHHHcCCeeE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS-WRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
.++++|.. ..+...++++++++|||||.++++.+....... . ...+... ..+.+...+..++.++++++||++.
T Consensus 124 ~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 124 RDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCADKIEN-W---DEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred hhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccccccC-c---HHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 98875543 346679999999999999999997544322110 0 0000000 0111222346899999999999977
Q ss_pred Eecc
Q 030558 164 HLGS 167 (175)
Q Consensus 164 ~~~~ 167 (175)
...+
T Consensus 199 ~~~d 202 (263)
T PTZ00098 199 VAKD 202 (263)
T ss_pred eEEe
Confidence 7644
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=133.00 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=80.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhh--CCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|++|+ +.++++... .....++..+..+ ...+++++++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d-~~~lp~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGD-ATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEcc-cccCCCCCCCEeEE
Confidence 4678999999999999999887643 5899999999998 555433221 1111122333222 23467778899999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+++.++++.. ++..++++++|+|||||++++.....
T Consensus 150 ~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 150 TMGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEecccccCC---CHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 9999985544 45699999999999999998885443
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=112.87 Aligned_cols=95 Identities=19% Similarity=0.391 Sum_probs=73.0
Q ss_pred EEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccCcc
Q 030558 13 IELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVK 92 (175)
Q Consensus 13 LDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (175)
||+|||+|..+..+++..+.+|+++|++++++ +.+++....... .....+ ...+++++++||+|++..++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~~----~~~~~d-~~~l~~~~~sfD~v~~~~~~~~~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEGV----SFRQGD-AEDLPFPDNSFDVVFSNSVLHHL- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTSTE----EEEESB-TTSSSS-TT-EEEEEEESHGGGS-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccCc----hheeeh-HHhCccccccccccccccceeec-
Confidence 89999999999999887678899999999998 666665544333 233333 34568889999999999999655
Q ss_pred cchHHHHHHHHHHhhcCCCCceee
Q 030558 93 QYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 93 ~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++..++++++.|+|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 5677999999999999998875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-19 Score=128.70 Aligned_cols=155 Identities=13% Similarity=0.162 Sum_probs=112.4
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...+.+|.+|||||||.|.+++++|++.+.+|+|+++|+++. +.+++.+...++..++.....++. ...+.||-|
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~r----d~~e~fDrI 141 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYR----DFEEPFDRI 141 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEecccc----cccccccee
Confidence 345678999999999999999999999889999999999997 888888888888544444443333 223459999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeee-ccCCCcchhHHHHHHHHcCCe
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWR-RRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+|..++.|.. .+.....++.+.++|+|||.+++......+.... ..+.|+..+. +.....+.....+.++++||.
T Consensus 142 vSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~ 217 (283)
T COG2230 142 VSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASEAGFV 217 (283)
T ss_pred eehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcE
Confidence 9999985554 5668899999999999999988874433332211 2233333322 111122347777779999999
Q ss_pred eEEec
Q 030558 162 VKHLG 166 (175)
Q Consensus 162 ~~~~~ 166 (175)
+.+..
T Consensus 218 v~~~~ 222 (283)
T COG2230 218 VLDVE 222 (283)
T ss_pred EehHh
Confidence 87653
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=132.52 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=99.9
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...+.+|.+|||||||.|.+++.++++.+++|+|+.+|+++. +.+++.+...++...+.....++ ..+ +.+||.|
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~---~~~-~~~fD~I 131 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDY---RDL-PGKFDRI 131 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-G---GG----S-SEE
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeec---ccc-CCCCCEE
Confidence 346778999999999999999999998899999999999997 88888888877754444433333 222 2399999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCC-CCCCCceEeeee-ccCCCcchhHHHHHHHHcCC
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE-GLPWPAFLMSWR-RRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 160 (175)
++..++.|.. .++...+++++.+.|+|||++++............ ......|+..+. +.....+...+...++++||
T Consensus 132 vSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l 210 (273)
T PF02353_consen 132 VSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGL 210 (273)
T ss_dssp EEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-
T ss_pred EEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCE
Confidence 9999996554 46777999999999999999988733322211000 001112222221 11112235777788999999
Q ss_pred eeEEec
Q 030558 161 EVKHLG 166 (175)
Q Consensus 161 ~~~~~~ 166 (175)
++.++.
T Consensus 211 ~v~~~~ 216 (273)
T PF02353_consen 211 EVEDVE 216 (273)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988774
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=122.05 Aligned_cols=106 Identities=17% Similarity=0.348 Sum_probs=79.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|..+..+++. +.+|+|+|+|+.++ +.++++....+.. .+.....+.. ..++ +++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i-~~a~~~~~~~~~~-~v~~~~~d~~-~~~~-~~~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSI-ANLERIKAAENLD-NLHTAVVDLN-NLTF-DGEYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-cceEEecChh-hCCc-CCCcCEEEEe
Confidence 446789999999999999999987 78999999999998 6666666665551 2233333322 2223 4579999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++++. ..+++..+++++.++|+|||.+++.
T Consensus 103 ~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 103 VVLMFL-EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cchhhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 998444 3557789999999999999986554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-19 Score=139.19 Aligned_cols=150 Identities=12% Similarity=0.183 Sum_probs=101.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|..+..+++..+.+|+|+|+|+.++ +.++++... ...++..+..+.. ..++++++||+|++..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l-~~A~~~~~~--~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMI-SFALERAIG--RKCSVEFEVADCT-KKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHhhc--CCCceEEEEcCcc-cCCCCCCCEEEEEECC
Confidence 45789999999999999999887788999999999998 565555432 2122333333332 2345567999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
+++|..+ ...++++++++|+|||++++..+......... ....+.. ...+...+...+.++++++||++..+.
T Consensus 341 ~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~--~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 341 TILHIQD---KPALFRSFFKWLKPGGKVLISDYCRSPGTPSP--EFAEYIK--QRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred cccccCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH--HHHHHHH--hcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9966654 45999999999999999998855432211000 0000111 111222345889999999999987664
Q ss_pred c
Q 030558 167 S 167 (175)
Q Consensus 167 ~ 167 (175)
+
T Consensus 414 d 414 (475)
T PLN02336 414 D 414 (475)
T ss_pred c
Confidence 3
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-20 Score=125.03 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=93.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++. +.+|+++|+++.++. . . ......+.. .....++++||+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~-~---------~--~~~~~~~~~-~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIE-K---------R--NVVFDNFDA-QDPPFPDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHH-H---------T--TSEEEEEEC-HTHHCHSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHh-h---------h--hhhhhhhhh-hhhhccccchhhHhhH
Confidence 456899999999999999999776 779999999999973 3 1 111111111 1223456799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
++++|.. ++..+++++.++|||||.+++..+............+.. ...........+..++.++++++||++.+
T Consensus 86 ~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 86 DVLEHLP---DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRY-DRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SSGGGSS---HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCG-TCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHhhcc---cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCC-cCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9996665 566999999999999999999866542110000000000 00000001112358999999999999865
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=121.57 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=106.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC-------CcEEEEeCChHHHHHHHHHHHhhCCCCCCc-ceeeccCCCCCCCCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN-------LDITTSDYNDQEIEDNIAYNSTTNGITPAL-PHIKHSWGDAFPIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-------~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (175)
....+.++||++||||-.+..+.+... .+|+.+|+||.|| ...++......+...- .......++.+|+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 344679999999999999988877652 5799999999999 4444444334442221 111222356788999
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC--C---------------CCCC---CCCCceE
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG--E---------------GTEG---LPWPAFL 136 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~--~---------------~~~~---~~~~~~~ 136 (175)
++||...++..+.++.+++ ++++|++|+|||||+|++......+. . .++. .....++
T Consensus 176 ~s~D~yTiafGIRN~th~~---k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHIQ---KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred CcceeEEEecceecCCCHH---HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999997887655 99999999999999999874333221 0 1110 1111244
Q ss_pred eeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 137 MSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
....+++.. .++|..+.+++||....
T Consensus 253 veSI~rfp~--qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPP--QEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCC--HHHHHHHHHHcCCcccc
Confidence 444455555 68999999999998665
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=124.79 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=95.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|+ +.++.. +. ..+..+.. .+ ..+++||+|++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~----~~----~~~~~d~~-~~-~~~~~fD~v~~ 95 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER----GV----DARTGDVR-DW-KPKPDTDVVVS 95 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc----CC----cEEEcChh-hC-CCCCCceEEEE
Confidence 3467899999999999999998874 56899999999998 444321 12 23332322 22 23568999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-----CCCC--CCCCceEe--eeeccCCCcchhHHHHHH
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----GTEG--LPWPAFLM--SWRRRIGKEDETIFFTSC 155 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-----~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~ 155 (175)
+.++++.. ++..++++++++|||||.+++..+...... ..+. ..+..... .+.......+...+.+++
T Consensus 96 ~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 96 NAALQWVP---EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred ehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHH
Confidence 99995554 445999999999999999998754321111 0000 01111100 011111223468899999
Q ss_pred HHcCCeeEEec
Q 030558 156 ENAGLEVKHLG 166 (175)
Q Consensus 156 ~~~g~~~~~~~ 166 (175)
+++||++....
T Consensus 173 ~~aGf~v~~~~ 183 (255)
T PRK14103 173 TDAGCKVDAWE 183 (255)
T ss_pred HhCCCeEEEEe
Confidence 99999865443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-18 Score=123.92 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=97.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++|++|||||||+|..+..++.+++..|+|+|+++.-+ ...+...+..+.......+.+.+ +.++. .+.||+|++
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~-~QF~~i~~~lg~~~~~~~lplgv-E~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY-LQFEAIKHFLGQDPPVFELPLGV-EDLPN-LGAFDTVFS 188 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH-HHHHHHHHHhCCCccEEEcCcch-hhccc-cCCcCEEEE
Confidence 4578999999999999999999998677799999998653 22111111111111111111122 33444 679999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..++||-.++ ...|.++...|+|||.+++-+.-.........-+.. .+....+-|...+...+.++++++||.-.+
T Consensus 189 MGVLYHrr~P---l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~-rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 189 MGVLYHRRSP---LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPED-RYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred eeehhccCCH---HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCC-cccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 9999887654 499999999999999999874333222211110100 111122222233568999999999998555
Q ss_pred e
Q 030558 165 L 165 (175)
Q Consensus 165 ~ 165 (175)
+
T Consensus 265 ~ 265 (315)
T PF08003_consen 265 C 265 (315)
T ss_pred E
Confidence 4
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=120.66 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=98.9
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
++|||||||+|..+..+++.. +.+|+++|+|+.++ +.++.+....+...++..+..+.... +. .++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHH
Confidence 479999999999999998875 57899999999998 77777776666644444444443222 22 3589999999998
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
++.. +...+++++.++|+|||.+++......... .. .......+ ..+...+.+.++++||++.+..
T Consensus 78 ~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~-------~~~~~~~~-~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 78 HHIK---DKMDLFSNISRHLKDGGHLVLADFIANLLS-AI-------EHEETTSY-LVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HhCC---CHHHHHHHHHHHcCCCCEEEEEEcccccCc-cc-------cccccccc-cCCHHHHHHHHHHCCCeEEEeE
Confidence 5554 455999999999999999998743221100 00 00011111 1235788999999999987653
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=125.34 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=98.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++....+. .++.....+. ..+++.+++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~-~~v~~~~~d~-~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGY-TNVEFRLGEI-EALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCC-CCEEEEEcch-hhCCCCCCceeEE
Confidence 345789999999999999887777544 3699999999998 667766665554 2223322222 2345567799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+++.++++.. +...++++++++|||||++++......... ..+... ......... ...+..++.++++++||.
T Consensus 151 i~~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~e~~~~l~~aGf~ 224 (272)
T PRK11873 151 ISNCVINLSP---DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRND-AELYAGCVA--GALQEEEYLAMLAEAGFV 224 (272)
T ss_pred EEcCcccCCC---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHh-HHHHhcccc--CCCCHHHHHHHHHHCCCC
Confidence 9998885444 344899999999999999998732221111 000000 000100000 112357899999999998
Q ss_pred eEEe
Q 030558 162 VKHL 165 (175)
Q Consensus 162 ~~~~ 165 (175)
...+
T Consensus 225 ~v~i 228 (272)
T PRK11873 225 DITI 228 (272)
T ss_pred ceEE
Confidence 7665
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-18 Score=119.12 Aligned_cols=105 Identities=17% Similarity=0.301 Sum_probs=78.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++. +.+|+|+|+|+.++ +.++++...++.. +.....+. +..++ +++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~-~~~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDI-NAAAL-NEDYDFIFST 101 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccc-hhccc-cCCCCEEEEe
Confidence 345789999999999999999886 78999999999998 6666666555542 22222222 12222 3589999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++++ .+.++...+++++.+.|+|||.+++.
T Consensus 102 ~~~~~-~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVFMF-LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccccc-CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 88743 33456779999999999999986665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-18 Score=114.73 Aligned_cols=107 Identities=21% Similarity=0.369 Sum_probs=82.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i 82 (175)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|+ +.++......+.. ++..+..+..+ ++ +. +.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccccC-CCeeEE
Confidence 357899999999999999998543 67899999999998 7777776666663 45555555554 33 33 799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
++..++++.. ++..+++++.+.|+++|.+++..+.
T Consensus 78 ~~~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999984443 5559999999999999999887444
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=122.39 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=80.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++++|||+|||+|..+..+++.. +.+|+++|+++.++ +.++.+....+. .++..+..+.. ..++.+++||+|+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~-~~~~~~~~fD~V~ 119 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGL-HNVELVHGNAM-ELPFDDNSFDYVT 119 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCC-CceEEEEechh-cCCCCCCCccEEE
Confidence 3457899999999999999998764 45899999999998 677666655444 23333333322 2345667999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+..++.+. ++...+++++.++|+|||.+++...
T Consensus 120 ~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 120 IGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EecccccC---CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99887433 3455999999999999999987643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=113.68 Aligned_cols=135 Identities=20% Similarity=0.213 Sum_probs=97.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++...++. .+..+..++ .....++||+|+++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~---~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAV-KELRENAKLNNV--GLDVVMTDL---FKGVRGKFDVILFN 89 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccc---ccccCCcccEEEEC
Confidence 446788999999999999999887 45899999999998 777878776655 222333232 22334689999999
Q ss_pred CcccCcccc------------------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030558 86 DILLYVKQY------------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 86 ~~l~~~~~~------------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
..+++.... ..+..+++++.++|+|||++++..... ..
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~------------------------~~ 145 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL------------------------NG 145 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc------------------------CC
Confidence 776433211 124578999999999999888752211 11
Q ss_pred hhHHHHHHHHcCCeeEEecceEEE
Q 030558 148 ETIFFTSCENAGLEVKHLGSRVYC 171 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~~~ 171 (175)
...+.+.+++.||+++.+.+...+
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecC
Confidence 377889999999999888766554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-18 Score=123.31 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=98.8
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-Cc-ceeeccCCCCCCCCCCCccEEEeCC
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-AL-PHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
|++|||+|||.|.++..||+. |..|+|+|.++.|+ +.++......-... .+ ..+.+...+. +...+.||.|+++.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~~-E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTDV-EGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcch-hhcccccceeeeHH
Confidence 588999999999999999887 89999999999998 66555533322211 00 1122222221 22234599999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCC--CCCCCCC-CCCCceEee-ee-ccCCCcchhHHHHHHHHcCCe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE--QGEGTEG-LPWPAFLMS-WR-RRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~--~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~ 161 (175)
++ ++..+++.+++.+.+.|||+|++++++.... .....++ .+...-+.. .. .|-.-.++.+..+.++.++++
T Consensus 167 vl---eHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 167 VL---EHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred HH---HHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 99 5555677999999999999999999843321 1111111 000000000 00 111112357888889999999
Q ss_pred eEEecceEE
Q 030558 162 VKHLGSRVY 170 (175)
Q Consensus 162 ~~~~~~~~~ 170 (175)
+..+-+.+|
T Consensus 244 v~~v~G~~y 252 (282)
T KOG1270|consen 244 VNDVVGEVY 252 (282)
T ss_pred hhhhhcccc
Confidence 888866554
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=110.54 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=88.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|..++.+++.. +.+|+++|+|+.|+ +.++++.+.++.. .+..+..+..+ .+. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~-~i~~~~~d~~~-~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLK-NVTVVHGRAEE-FGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCC-CEEEEeccHhh-CCC-CCCccEEEEcc
Confidence 47899999999999999988743 67899999999998 7788888777762 23333333322 333 56899999975
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
. . ++..++++++++|+|||++++..... ....+....+..|+.+..+
T Consensus 121 ~----~---~~~~~l~~~~~~LkpGG~lv~~~~~~-------------------------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 V----A---SLSDLVELCLPLLKPGGRFLALKGRD-------------------------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred c----c---CHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------hHHHHHHHHHhcCceEeee
Confidence 2 2 34489999999999999888741110 1356777777778875554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=123.34 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=94.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||||||+|.++..+++.. +.+|+++|+|+.|+ +.++++.... ++..+..+. ..+++.+++||+|+++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~~----~i~~i~gD~-e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLK----ECKIIEGDA-EDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhcc----CCeEEeccH-HhCCCCCCceeEEEEcC
Confidence 46799999999999999888764 56899999999998 5555443322 223333222 23456678999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
++.++.+ ...++++++++|+|||++++......... .... . ..+......+++.++++++||+..++
T Consensus 187 ~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~---~------~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 187 SIEYWPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF---A------DVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhhhCCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh---h------hhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 9866554 34899999999999999887532211100 0000 0 00111123588999999999986655
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=113.10 Aligned_cols=109 Identities=27% Similarity=0.431 Sum_probs=73.6
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhCC--CCCCcceeeccCCCCC--C-CCC
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAF--P-IPN 76 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~-~~~ 76 (175)
++....+++|||||||+|..++.+++. .+.+|+++|.++ .+ +.++.|++.|+ ....+....++|++.. + ...
T Consensus 40 ~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 40 NPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp -GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHHS-
T ss_pred chhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCccccccccc
Confidence 356778999999999999999999887 477899999999 65 88899999887 4567778889998744 1 234
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++||+|++++++|.....+ .+++-+.+.++|+|.+++
T Consensus 118 ~~~D~IlasDv~Y~~~~~~---~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFE---PLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp SSBSEEEEES--S-GGGHH---HHHHHHHHHBTT-TTEEE
T ss_pred ccCCEEEEecccchHHHHH---HHHHHHHHHhCCCCEEEE
Confidence 6899999999997765544 777778888899986444
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=110.58 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=97.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
.+|.+|||||||.|.+...+.+..+...+|+|++++.+.++.+ +++ +.++.+..+.++ +++++||+|+++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~-----rGv----~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA-----RGV----SVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH-----cCC----CEEECCHHHhHhhCCCCCccEEehH
Confidence 4689999999999999999988778999999999987644433 234 566777766664 889999999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC--------CCCCCC----CCCceEeeeeccCCCcchhHHHH
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG--------EGTEGL----PWPAFLMSWRRRIGKEDETIFFT 153 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 153 (175)
+++.. ...+..+++|+.|+-+ ..+++.++.... .+.|+. +..++...-.+.. +.++|.+
T Consensus 83 qtLQ~---~~~P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~---Ti~DFe~ 153 (193)
T PF07021_consen 83 QTLQA---VRRPDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLC---TIKDFED 153 (193)
T ss_pred hHHHh---HhHHHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccc---cHHHHHH
Confidence 99944 4455699999998854 335553333211 022221 1112222222222 2599999
Q ss_pred HHHHcCCeeEEe
Q 030558 154 SCENAGLEVKHL 165 (175)
Q Consensus 154 ~~~~~g~~~~~~ 165 (175)
++++.|+++++-
T Consensus 154 lc~~~~i~I~~~ 165 (193)
T PF07021_consen 154 LCRELGIRIEER 165 (193)
T ss_pred HHHHCCCEEEEE
Confidence 999999987764
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-17 Score=120.33 Aligned_cols=104 Identities=16% Similarity=0.348 Sum_probs=79.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.++..+++. +.+|+|+|+|+.++ +.++++....+. .+.....+..+ ... +++||+|++..
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~-~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINS-ASI-QEEYDFILSTV 192 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhc-ccc-cCCccEEEEcc
Confidence 35679999999999999999886 78999999999998 677766666555 23333222221 222 67899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++++. +.+++..+++++.++|+|||.+++.
T Consensus 193 vl~~l-~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 193 VLMFL-NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhhhC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 88544 3567789999999999999986664
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-17 Score=112.91 Aligned_cols=107 Identities=15% Similarity=0.342 Sum_probs=78.4
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+++++||||||.|+.+++||+. |..|+++|+|+..+ +.+++.....++ .+.....+..+ ..+ ++.||+|++
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al-~~l~~~a~~~~l--~i~~~~~Dl~~-~~~-~~~yD~I~s 100 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVAL-EKLQRLAEEEGL--DIRTRVADLND-FDF-PEEYDFIVS 100 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHH-HHHHHHHHHTT---TEEEEE-BGCC-BS--TTTEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHhhcCc--eeEEEEecchh-ccc-cCCcCEEEE
Confidence 3456789999999999999999998 99999999999998 666666666666 23444444322 222 368999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
..++.+.. .+.+..+++.+.+.++|||.+++.+
T Consensus 101 t~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQ-RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 87774444 6778899999999999999888753
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=119.05 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=92.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||||.+++.+++.++.+|+|+|++|.++ +.++.|...|+...++... ........+||+|+++
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~-----~~~~~~~~~~dlvvAN 232 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS-----LSEDLVEGKFDLVVAN 232 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES-----CTSCTCCS-EEEEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE-----EecccccccCCEEEEC
Confidence 346889999999999999999998777899999999998 8999999999995533221 1222334899999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
=. .+.+..++..+.+.++|||.++++ .++. .....+.+.+++ ||++.+.
T Consensus 233 I~------~~vL~~l~~~~~~~l~~~G~lIlS----------------GIl~--------~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 233 IL------ADVLLELAPDIASLLKPGGYLILS----------------GILE--------EQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp S-------HHHHHHHHHHCHHHEEEEEEEEEE----------------EEEG--------GGHHHHHHHHHT-TEEEEEE
T ss_pred CC------HHHHHHHHHHHHHhhCCCCEEEEc----------------cccH--------HHHHHHHHHHHC-CCEEEEE
Confidence 33 234568888999999999988884 2222 123667777776 9986544
Q ss_pred ---cceEEEEe
Q 030558 166 ---GSRVYCIK 173 (175)
Q Consensus 166 ---~~~~~~i~ 173 (175)
+++.-++.
T Consensus 282 ~~~~~W~~l~~ 292 (295)
T PF06325_consen 282 REEGEWVALVF 292 (295)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 44444433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=117.33 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=80.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh---CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|..+..+++. .+.+|+++|+|+.|+ +.++++....+...++..+ .++....+.+.+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~---~~d~~~~~~~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVI---EGDIRDIAIENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEE---eCChhhCCCCCCCEEe
Confidence 36789999999999999888763 367899999999998 7777776655443333333 3333223334699999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
++.++++.. .++...++++++++|||||.+++..
T Consensus 131 ~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998885544 4567799999999999999999973
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=121.31 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=94.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++..+.+|+++|+|++++ +.++++.. +. . +.+...+.... +++||.|++.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~---v~~~~~D~~~l-~~~fD~Ivs~ 235 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--P---VEIRLQDYRDL-NGQFDRIVSV 235 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--e---EEEEECchhhc-CCCCCEEEEe
Confidence 457889999999999999999987788999999999998 66665543 22 1 22222232222 4689999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeee-ccCCCcchhHHHHHHHHcCCeeEE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWR-RRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
.++.+.. ..+...+++++.++|||||.+++.......... ....|...+. +.....+...+... .+.||++.+
T Consensus 236 ~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~----~~~~~i~~yifp~g~lps~~~i~~~-~~~~~~v~d 309 (383)
T PRK11705 236 GMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT----NVDPWINKYIFPNGCLPSVRQIAQA-SEGLFVMED 309 (383)
T ss_pred CchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC----CCCCCceeeecCCCcCCCHHHHHHH-HHCCcEEEE
Confidence 9885543 455679999999999999999987443322110 0112222221 11111124555554 446898877
Q ss_pred ec
Q 030558 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 310 ~~ 311 (383)
T PRK11705 310 WH 311 (383)
T ss_pred Ee
Confidence 64
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-18 Score=108.69 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=59.1
Q ss_pred EEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-CCCccEEEeCCcccC
Q 030558 13 IELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDILLY 90 (175)
Q Consensus 13 LDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~i~~~~~l~~ 90 (175)
||+|||+|.++..++... ..+|+++|+|+.|+ +.++++...... .....+.+...+..... .++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 799999999999887764 66799999999998 444444444332 12234444444443332 259999999999966
Q ss_pred cccchHHHHHHHHHHhhcCCCCce
Q 030558 91 VKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 91 ~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
. +++..+++++.+.|+|||.+
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 6 56669999999999999964
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=114.51 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=94.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.++..+++. +.+|+|+|+|+.|+ +.++++....+.... +.+..++..... ++||+|++.+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i-~~a~~~~~~~~~~~~---i~~~~~d~~~~~-~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMV-QMARNRAQGRDVAGN---VEFEVNDLLSLC-GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCCc---eEEEECChhhCC-CCcCEEEEhh
Confidence 45789999999999999999876 77999999999998 666666554443222 333333322222 7899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCC----CCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ----GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
++++.. .+.+..+++++.+.+++++.+.+....... ........... .......+..++.++++++||++
T Consensus 128 ~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 128 VLIHYP-ASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSR-----ATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred HHHhCC-HHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCccc-----ccceEEecHHHHHHHHHHcCcee
Confidence 985554 456778999999998876544443111000 00000000000 00001113589999999999998
Q ss_pred EEec
Q 030558 163 KHLG 166 (175)
Q Consensus 163 ~~~~ 166 (175)
....
T Consensus 202 ~~~~ 205 (219)
T TIGR02021 202 VREG 205 (219)
T ss_pred eeee
Confidence 8764
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-16 Score=108.73 Aligned_cols=100 Identities=21% Similarity=0.280 Sum_probs=73.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|.++..++... +.+|+++|+|+.|+ +.++++.+..+. .++..+..+..+ . ...++||+|++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~~-~~i~~i~~d~~~-~-~~~~~fD~I~s~ 116 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELGL-NNVEIVNGRAED-F-QHEEQFDVITSR 116 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhCC-CCeEEEecchhh-c-cccCCccEEEeh
Confidence 458899999999999999987754 46799999999997 677777766655 234444434332 2 235689999986
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. + . ++..+++.+.+.|+|||.+++.
T Consensus 117 ~-~---~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 117 A-L---A---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h-h---h---CHHHHHHHHHHhcCCCCEEEEE
Confidence 5 3 2 2337888899999999988773
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-16 Score=113.54 Aligned_cols=125 Identities=21% Similarity=0.285 Sum_probs=93.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC-CCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~i~~~ 85 (175)
.+|++|||+|||+|.+++.+++.++..|+|+|++|..+ +.++.|.+.|+... .+............ ++||+|+++
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~---~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVEL---LVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCch---hhhcccccchhhcccCcccEEEeh
Confidence 47899999999999999999998677799999999998 88888999988832 12222223333333 599999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
= + . ..+..+..++.+.++|||+++++ ..+. . -...+.+.+.++||++...
T Consensus 237 I-L---A--~vl~~La~~~~~~lkpgg~lIlS----------------GIl~-------~-q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 237 I-L---A--EVLVELAPDIKRLLKPGGRLILS----------------GILE-------D-QAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred h-h---H--HHHHHHHHHHHHHcCCCceEEEE----------------eehH-------h-HHHHHHHHHHhCCCeEeEE
Confidence 3 2 2 24558899999999999988884 1111 1 1367778888999987666
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=109.16 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=78.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++++|||+|||+|.+++.+++.... +|+++|+|+.++ +.+++|...++... +..+..++.+. ..+++||+|+++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n~~~n~~~~-v~~~~~d~~~~--~~~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRNAERNGLEN-VEVVQSDLFEA--LPDGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHHHHHTTCTT-EEEEESSTTTT--CCTTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHhcCccc-ccccccccccc--ccccceeEEEEcc
Confidence 6789999999999999999887533 599999999998 88999999988833 33333333332 2357999999998
Q ss_pred cccCccc--chHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~--~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++...+ ......++++..+.|+|||.+++.
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 7622221 124678999999999999988774
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-16 Score=112.55 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=89.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.+++.+++.+..+|+++|+|+.++ +.++++...++... .+.+..+ +.+||+|+++-
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~~~---~~~~~~~------~~~fD~Vvani 187 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGVEL---NVYLPQG------DLKADVIVANI 187 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCc---eEEEccC------CCCcCEEEEcC
Confidence 46899999999999999988776444599999999998 77788887766621 1111111 12799999864
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe-
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL- 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 165 (175)
.. +.+..+++++.++|+|||.++++... ......+.+.+++.||++...
T Consensus 188 ~~------~~~~~l~~~~~~~LkpgG~lilsgi~------------------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 188 LA------NPLLELAPDLARLLKPGGRLILSGIL------------------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred cH------HHHHHHHHHHHHhcCCCcEEEEEECc------------------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 32 23458899999999999988884111 112367888899999986554
Q ss_pred --cceEEEEe
Q 030558 166 --GSRVYCIK 173 (175)
Q Consensus 166 --~~~~~~i~ 173 (175)
+++..++.
T Consensus 238 ~~~~W~~~~~ 247 (250)
T PRK00517 238 ERGEWVALVG 247 (250)
T ss_pred EeCCEEEEEE
Confidence 44444443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=115.01 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=92.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|.++..+++.. +.+|+++|+|+.|+ +.++++.. .+..+..+.. .+ ...++||+|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~~------~~~~~~~d~~-~~-~~~~~fD~v~~ 99 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRLP------DCQFVEADIA-SW-QPPQALDLIFA 99 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhCC------CCeEEECchh-cc-CCCCCccEEEE
Confidence 3467899999999999999998865 57899999999998 55554421 1222222221 11 23458999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC-----CCC--CCCCceEeeee-ccCCCcchhHHHHHHH
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG-----TEG--LPWPAFLMSWR-RRIGKEDETIFFTSCE 156 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 156 (175)
+.++++.. +...+++++.++|+|||.+++..+....... ++. .++...+.... ......+...+.+.+.
T Consensus 100 ~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 100 NASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred ccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 99984443 4559999999999999999887543321110 000 11111111111 0111123567889999
Q ss_pred HcCCeeEE
Q 030558 157 NAGLEVKH 164 (175)
Q Consensus 157 ~~g~~~~~ 164 (175)
++|+.+..
T Consensus 177 ~~g~~v~~ 184 (258)
T PRK01683 177 PAACRVDI 184 (258)
T ss_pred hCCCceee
Confidence 99987543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=116.70 Aligned_cols=101 Identities=14% Similarity=0.235 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.|+ +.++.+... ...+..+. ..+++.+++||+|+++.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l-~~a~~~~~~------~~~~~~d~-~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPML-AQARQKDAA------DHYLAGDI-ESLPLATATFDLAWSNLA 112 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhCCC------CCEEEcCc-ccCcCCCCcEEEEEECch
Confidence 4678999999999999998775 78999999999998 555443221 12233333 335667789999999998
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+++.. ++..++.++.++|+|||.++++...
T Consensus 113 l~~~~---d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 113 VQWCG---NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred hhhcC---CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 84433 4559999999999999999987543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=113.37 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=99.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++.+....+. .+.....+..+......++||+|+++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEh
Confidence 346789999999999999999876 78899999999997 666665554433 22333333322222345789999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCC--CC-CC--CCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT--EG-LP--WPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
.++.+.. +...+++.+.+.|+|||++++........... +. .. ..........+....+..++.++++++||
T Consensus 122 ~~l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 122 EMLEHVP---DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hHhhccC---CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 8885444 45589999999999999998875432110000 00 00 00000000001111235789999999999
Q ss_pred eeEEecceEE
Q 030558 161 EVKHLGSRVY 170 (175)
Q Consensus 161 ~~~~~~~~~~ 170 (175)
++.+.....|
T Consensus 199 ~~v~~~~~~~ 208 (233)
T PRK05134 199 EVQDITGLHY 208 (233)
T ss_pred eEeeeeeEEe
Confidence 9887754433
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-16 Score=108.23 Aligned_cols=121 Identities=21% Similarity=0.181 Sum_probs=86.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+. .. +.+..++......++||+|++
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~-~~---i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGC-GN---IDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCC-CC---eEEEecCchhhcCcCCCEEEE
Confidence 3467899999999999999998865 46899999999998 777777776655 22 333333322222458999998
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
.... . .+..+++++.+.|+|||++++.... ..+..++.+.+++.||.
T Consensus 104 ~~~~---~---~~~~~l~~~~~~Lk~gG~lv~~~~~------------------------~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 104 GGSG---G---NLTAIIDWSLAHLHPGGRLVLTFIL------------------------LENLHSALAHLEKCGVS 150 (187)
T ss_pred CCCc---c---CHHHHHHHHHHhcCCCeEEEEEEec------------------------HhhHHHHHHHHHHCCCC
Confidence 7654 2 2347889999999999988773110 11246777888888975
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.4e-16 Score=112.06 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=100.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...++.+|||+|||+|.++..+++.. ..+|+++|+++.++ +.++++... ....+..+..+. ...++.+++||+|
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~~~~~~~d~-~~~~~~~~~~D~v 91 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPNVEFVRGDA-DGLPFPDGSFDAV 91 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCceEEEeccc-ccCCCCCCCceEE
Confidence 34567899999999999999998875 46899999999997 555554222 111222322222 2234556799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC--CCceEeeee-ccCCCcchhHHHHHHHHcC
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP--WPAFLMSWR-RRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 159 (175)
++..++.+.. +...+++++.++|+|||.+++..+............ ...+...+. ..........+.+.++++|
T Consensus 92 ~~~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 92 RSDRVLQHLE---DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAG 168 (241)
T ss_pred EEechhhccC---CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcC
Confidence 9999985554 455899999999999999988754321111000000 000000000 0111122467889999999
Q ss_pred CeeEEecceEEE
Q 030558 160 LEVKHLGSRVYC 171 (175)
Q Consensus 160 ~~~~~~~~~~~~ 171 (175)
|...++......
T Consensus 169 f~~~~~~~~~~~ 180 (241)
T PRK08317 169 LTDIEVEPYTLI 180 (241)
T ss_pred CCceeEEEEEEe
Confidence 987776555443
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.9e-17 Score=101.93 Aligned_cols=96 Identities=18% Similarity=0.312 Sum_probs=70.7
Q ss_pred EEEeCCCccHHHHHHHHhC--C--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 12 CIELGSGTGALAIFLRKAM--N--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~--~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
|||+|||+|..+..+++.. + .+++++|+|+.|+ +.+++.....+. .+..+..+..+ ++..+++||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEcCC
Confidence 7999999999999998875 3 7899999999999 666666655444 34444444432 4456779999999555
Q ss_pred -ccCcccchHHHHHHHHHHhhcCCCC
Q 030558 88 -LLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 88 -l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+.| .+.+++..+++++.++++|||
T Consensus 77 ~~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 644 667788999999999999997
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=111.35 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=88.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~~ 84 (175)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.++ +.++++...++. .++..+..+..+.++ +.+++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 46789999999999999998865 56799999999998 777777766554 233333333312222 55678999998
Q ss_pred CCcccCcccc-----hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030558 85 SDILLYVKQY-----SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 85 ~~~l~~~~~~-----~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
.....+.... .....+++++.++|+|||.+++..... .....+.+.+++.|
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~------------------------~~~~~~~~~~~~~g 173 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE------------------------GYAEYMLEVLSAEG 173 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH------------------------HHHHHHHHHHHhCc
Confidence 6543111100 013589999999999999888852211 01256677778888
Q ss_pred CeeE
Q 030558 160 LEVK 163 (175)
Q Consensus 160 ~~~~ 163 (175)
+.+.
T Consensus 174 ~~~~ 177 (202)
T PRK00121 174 GFLV 177 (202)
T ss_pred cccc
Confidence 7665
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.7e-16 Score=111.77 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
++.+|||+|||+|..+..+++... .+|+++|+++.++ +.++++....+....+..+..+..+ .+..+++||+|+++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~ 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIA 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEe
Confidence 568999999999999999988763 7899999999998 6776665543332333343333322 33446789999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.++.+.. +...+++++.+.|+|||.+++..
T Consensus 129 ~~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 129 FGLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 8884444 45599999999999999888763
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=112.61 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.|+ +.++++....+...++..+. ++........+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEee
Confidence 57889999999999999998753 57899999999998 67766655433322233333 3322223346899999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+.++.+.. .++...++++++++|+|||.+++..
T Consensus 129 ~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99985543 4567799999999999999999874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=100.22 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=75.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+.. .+..+..+.....+...++||+|++
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFI 94 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEE
Confidence 3456799999999999999998875 46899999999998 7777776665441 2222222221212233458999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.... ....++++++.+.|+|||.+++..
T Consensus 95 ~~~~------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSG------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcc------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 7543 233489999999999999988853
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=109.06 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=99.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+++++|+++.++ +.++++....+.. .+.....+..+......++||+|++..
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 45789999999999999988775 67899999999997 6666666554331 122222222212112246899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CC-----CC-CCCCceEeeeeccCCCcchhHHHHHHHHc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GT-----EG-LPWPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
++.+.. ++..+++++.+.|+|||.+++......... .. +. ...+.....+.+. .+..++.++++++
T Consensus 121 ~l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~ 194 (224)
T TIGR01983 121 VLEHVP---DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKF---IKPSELTSWLESA 194 (224)
T ss_pred HHHhCC---CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhc---CCHHHHHHHHHHc
Confidence 884444 455999999999999999887643221100 00 00 0000000001111 1347899999999
Q ss_pred CCeeEEecceEEE
Q 030558 159 GLEVKHLGSRVYC 171 (175)
Q Consensus 159 g~~~~~~~~~~~~ 171 (175)
||++.++....|.
T Consensus 195 G~~i~~~~~~~~~ 207 (224)
T TIGR01983 195 GLRVKDVKGLVYN 207 (224)
T ss_pred CCeeeeeeeEEee
Confidence 9999988776654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=113.56 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=77.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.+++.+++....+|+++|+++.++ +.++++...++....+... ..+..+..+++||+|+++.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~~~~~~~---~~~~~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVSDRLQVK---LIYLEQPIEGKADVIVANI 233 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCcceEEE---ecccccccCCCceEEEEec
Confidence 46789999999999999998876556899999999998 7888888887764322222 2222334456899999975
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. ..+..++.++.++|+|||.++++
T Consensus 234 ~~------~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 234 LA------EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred CH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 42 23458999999999999988874
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=110.28 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=74.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|..+..+++.. +.+++|+|+|+.|+ +.++.+.. .+.....+..+ ++.+++||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~------~~~~~~~d~~~--~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP------NINIIQGSLFD--PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC------CCcEEEeeccC--CCCCCCEEEEEEC
Confidence 467789999999999999998763 67899999999998 55554321 12223333222 5667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.+++|.. .+.+.+++++++++++ +.+++...
T Consensus 113 ~vL~hl~-p~~~~~~l~el~r~~~--~~v~i~e~ 143 (204)
T TIGR03587 113 GVLIHIN-PDNLPTAYRELYRCSN--RYILIAEY 143 (204)
T ss_pred ChhhhCC-HHHHHHHHHHHHhhcC--cEEEEEEe
Confidence 9997664 5678899999999873 55666543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=109.51 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=103.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (175)
..++|||||||+|.+++.+|++. ..+++++|+++.+. +.++++.+.+.+..++..++.+..+..+. ...+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 47899999999999999999985 48899999999997 88999999999988888887776554432 23379999999
Q ss_pred CcccCcccc---------------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhH
Q 030558 86 DILLYVKQY---------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 150 (175)
Q Consensus 86 ~~l~~~~~~---------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (175)
..+|-.... -++..+++...++|||||.++++.... ...+
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-------------------------rl~e 177 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-------------------------RLAE 177 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------------------HHHH
Confidence 887533322 236789999999999999988863221 1356
Q ss_pred HHHHHHHcCCeeEEe
Q 030558 151 FFTSCENAGLEVKHL 165 (175)
Q Consensus 151 ~~~~~~~~g~~~~~~ 165 (175)
+.+.|++.+|+..++
T Consensus 178 i~~~l~~~~~~~k~i 192 (248)
T COG4123 178 IIELLKSYNLEPKRI 192 (248)
T ss_pred HHHHHHhcCCCceEE
Confidence 777788878776654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=103.28 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=95.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCC-cceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|..+..++.. +.+|+++|+|+.++ +.++++...++.... +..+..++.+. +..++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEEC
Confidence 46789999999999999999887 88999999999998 777777776655221 33344433332 334489999998
Q ss_pred CcccCcc------------------cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030558 86 DILLYVK------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 86 ~~l~~~~------------------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
..++... ....+..+++++.++|+|||.+++..+.. ..
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~------------------------~~ 153 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL------------------------TG 153 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc------------------------CC
Confidence 7653211 01234578999999999999887753211 01
Q ss_pred hhHHHHHHHHcCCeeEEecceE
Q 030558 148 ETIFFTSCENAGLEVKHLGSRV 169 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~ 169 (175)
...+.+.++++||++....+..
T Consensus 154 ~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 154 EDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred HHHHHHHHHHCCCeeeeeeecc
Confidence 3678889999999877765443
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-16 Score=108.80 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=80.5
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l 88 (175)
..+||+|||||..-.++--..+..||++|+++.| ++.+.+....+.. .++....+..++.++ .+++++|+|++..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~m-ee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKM-EEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHH-HHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 3479999999999888753448899999999999 4777666666533 344434444555665 788999999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+... +..+.++++.|+|+|||++++.
T Consensus 156 CSve---~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 156 CSVE---DPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred eccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 5444 5569999999999999999987
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.2e-16 Score=111.15 Aligned_cols=90 Identities=14% Similarity=0.314 Sum_probs=69.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||||.++..+++..+.+|+|+|+|++|+ +.++.+. ..+.. ....+|+++++||+|+++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~-d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVG-SFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEe-chhhCCCCCCCEEEEEecCh
Confidence 4689999999999999999887557899999999998 4433221 11222 22456788899999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCC
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPK 111 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pg 111 (175)
+++.. ++.++++++.|+|||.
T Consensus 120 l~~~~---d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 120 LHASD---NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhccC---CHHHHHHHHHHHhcCc
Confidence 85544 4559999999999994
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=113.30 Aligned_cols=147 Identities=18% Similarity=0.091 Sum_probs=87.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.|+ +.++++....... .....+.+...+. +..+++||+|++.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~f~~~Dl-~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMV-AEAERRAKEALAALPPEVLPKFEANDL-ESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcccccccccceEEEEcch-hhcCCCcCEEEEcC
Confidence 5789999999999999999886 78999999999998 6666554432110 0011222222222 22357899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeecc-ccCCC-----CCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL-TKNEQ-----GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
+++|.++ +....+++.+.+. .++|. ++.. +.... ...+.+.... ...+.+ ..+.+++.++++++||
T Consensus 221 vL~H~p~-~~~~~ll~~l~~l-~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~----~~~r~y-~~s~eel~~lL~~AGf 292 (315)
T PLN02585 221 VLIHYPQ-DKADGMIAHLASL-AEKRL-IISFAPKTLYYDILKRIGELFPGPS----KATRAY-LHAEADVERALKKAGW 292 (315)
T ss_pred EEEecCH-HHHHHHHHHHHhh-cCCEE-EEEeCCcchHHHHHHHHHhhcCCCC----cCceee-eCCHHHHHHHHHHCCC
Confidence 9866543 3455677777754 55544 4432 21100 0011110000 000111 1246899999999999
Q ss_pred eeEEe
Q 030558 161 EVKHL 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
++...
T Consensus 293 ~v~~~ 297 (315)
T PLN02585 293 KVARR 297 (315)
T ss_pred EEEEE
Confidence 97755
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=119.75 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=79.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~i~~~ 85 (175)
.++++|||||||+|.++..+++. +.+|+|+|+++.+++.+.+. +.....+..+..+..+ ..++++++||+|++.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~----~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESI----NGHYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHH----hccCCceEEEEecccccccCCCCCCEEEEehh
Confidence 35679999999999999999887 67899999999998433221 1111233444444432 345667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.++++.. .+.+..+++++.++|+|||.+++..
T Consensus 111 ~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 111 WLLMYLS-DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9986654 4457799999999999999988864
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=116.06 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCC
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~ 86 (175)
+++|||+|||+|.+++.+++.. ..+|+++|+|+.++ +.+++|.+.++.. ....+.+.+.+... ..+.+||+|+++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSRLNVETNMPE-ALDRCEFMINNALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCcc-cCceEEEEEccccccCCCCCEEEEEECc
Confidence 4689999999999999998875 56899999999998 8888888777542 12234444444443 3345899999987
Q ss_pred cccCccc---chHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQ---YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~---~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ |... .....++++++.++|+|||.++++
T Consensus 307 Pf-h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 307 PF-HQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred Cc-ccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 76 3321 123458899999999999999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=112.90 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=98.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|.++..+++.. ..+++++|. +.++ +.++++....+...++..+..+..+ .++ +.+|+|++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~-~~~--~~~D~v~~ 221 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYK-ESY--PEADAVLF 221 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccC-CCC--CCCCEEEe
Confidence 3456899999999999999998875 567999998 6787 7777777777765444444443322 122 34799999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCc------eEeeeeccCCCcchhHHHHHHHHc
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA------FLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
+.+++++. .+....+++++++.|+|||++++......+........... +..... .....+++.++++++
T Consensus 222 ~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 222 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVL---GFKEQARYKEILESL 297 (306)
T ss_pred EhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccc---cCCCHHHHHHHHHHc
Confidence 98885443 45557899999999999999999843222111110000000 000011 111248999999999
Q ss_pred CCeeEE
Q 030558 159 GLEVKH 164 (175)
Q Consensus 159 g~~~~~ 164 (175)
||+..+
T Consensus 298 Gf~~v~ 303 (306)
T TIGR02716 298 GYKDVT 303 (306)
T ss_pred CCCeeE
Confidence 998554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=108.24 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=93.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+....+.... ++ .+..+++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~~~---~d-~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMV-EEARERAPEAGLAGNITFEV---GD-LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccCcEEEE---cC-chhccCCcCEEEEcc
Confidence 45789999999999999999887 67799999999998 66666655544322233332 33 344467899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
++.+++ .+.+..+++++.+.+++++.+.+ ........ ..+...++... ........+..++.+.++++||++.+
T Consensus 136 ~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 136 VLIHYP-QEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPS--RTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred hhhcCC-HHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCcc--CCCCccccCHHHHHHHHHHCCCceEe
Confidence 985544 45677889999887654442222 11110000 00000000000 00011112357899999999999887
Q ss_pred ecc
Q 030558 165 LGS 167 (175)
Q Consensus 165 ~~~ 167 (175)
+..
T Consensus 212 ~~~ 214 (230)
T PRK07580 212 TER 214 (230)
T ss_pred eee
Confidence 743
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=105.57 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=76.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++...++...++..+..+..+.++...+.||.|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 44578899999999999999988754 35799999999998 7788787776643333333333222222234689999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++.... ..+..+++++.+.|+|||++++
T Consensus 116 ~~~~~~------~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 116 FIGGGS------EKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EECCCc------ccHHHHHHHHHHHcCCCcEEEE
Confidence 985422 2345899999999999998876
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=107.25 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=91.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|+ +.++.+....+. ..... ..+.++..+++||+|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~~----~~~~~-~~~~l~~~~~~fD~V 133 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPGV----TFRQA-VSDELVAEGERFDVV 133 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCCC----eEEEE-ecccccccCCCccEE
Confidence 56789999999999998887531 34899999999998 555544333222 22221 123344456799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC------CCCCCCCCce-----EeeeeccCCCcchhHH
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAF-----LMSWRRRIGKEDETIF 151 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 151 (175)
+++.+++|.. .+++..+++++.++++ |.+++......... .........+ ..+..+.+. .+++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~---~~el 207 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYT---PAEL 207 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcC---HHHH
Confidence 9999996665 3456789999999998 44444321111000 0000000000 111122332 4888
Q ss_pred HHHHHHcCCeeEEecceEEE
Q 030558 152 FTSCENAGLEVKHLGSRVYC 171 (175)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~~~ 171 (175)
.+++++ ||++...-.-.|.
T Consensus 208 ~~ll~~-Gf~~~~~~~~~~~ 226 (232)
T PRK06202 208 AALAPQ-GWRVERQWPFRYL 226 (232)
T ss_pred HHHhhC-CCeEEeccceeeE
Confidence 999998 9998887544443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-16 Score=107.01 Aligned_cols=101 Identities=22% Similarity=0.326 Sum_probs=73.6
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
.++||+|||.|.++..|+.+ ..+++++|+|+..+ +.+++.... . ..+..+..+..+. .+.++||+|+.+.++|
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~-~~V~~~~~dvp~~--~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--L-PHVEWIQADVPEF--WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----SS-EEEEEEES-GG
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--C-CCeEEEECcCCCC--CCCCCeeEEEEehHhH
Confidence 57999999999999999887 67899999999998 555544432 2 2233333333222 3567999999999999
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 90 YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|..+.+++..++..+.+.|+|||.+++.
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9987788999999999999999999986
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-15 Score=106.06 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=77.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++....+|+++|+|+.++ +.++++...++. .+..+..++.+ ...+++||+|+++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a~~n~~~~~~--~~~~~~~d~~~--~~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSARLNALLAGV--DVDVRRGDWAR--AVEFRPFDVVVSN 108 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHhCC--eeEEEECchhh--hccCCCeeEEEEC
Confidence 345789999999999999999886334899999999998 777777776554 22333333322 1345689999998
Q ss_pred CcccCccc------------------chHHHHHHHHHHhhcCCCCceeecccc
Q 030558 86 DILLYVKQ------------------YSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 86 ~~l~~~~~------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..+..... ...+..+++++.+.|+|||++++....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 65321111 112457888999999999998886433
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=105.58 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=76.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
++.+|||+|||+|..+..+++... .+++++|+++.++ +.++.+.. ...++.....+.. ..++.+++||+|+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~-~~~~~~~~~D~i~~~ 113 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAE-ALPFEDNSFDAVTIA 113 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchh-cCCCCCCcEEEEEEe
Confidence 678999999999999999988765 4899999999987 55555443 1122333333332 233455789999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.++.+. +++..+++++.+.|+|||.+++...
T Consensus 114 ~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 114 FGLRNV---TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eeeCCc---ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 887333 3566999999999999999988643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=119.39 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=79.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i 82 (175)
..++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|+ +.++.+....+. .+..+..+.. .++ +.+++||+|
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~-dLp~~fedeSFDvV 491 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAI-NLSSSFEKESVDTI 491 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchH-hCccccCCCCEEEE
Confidence 4568899999999999998887754 67899999999998 666555443322 2222222222 233 567799999
Q ss_pred EeCCcccCcc----------cchHHHHHHHHHHhhcCCCCceeecc
Q 030558 83 LASDILLYVK----------QYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 83 ~~~~~l~~~~----------~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+++.+++++. ..+++.+++++++++|||||.+++..
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998874332 13567899999999999999999974
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=104.04 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-------CCCcceeeccCCCCCCC---CCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------TPALPHIKHSWGDAFPI---PNP 77 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~ 77 (175)
++.+|||+|||.|..++.||+. |.+|+|+|+|+.+++...+++...... ......+.+.+++.... ..+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 5679999999999999999987 999999999999984432221111000 00112334444444433 235
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.||.|+-..++.+. ..+...+.++.+.++|+|||+.++.
T Consensus 116 ~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 89999998887444 4667789999999999999975554
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=112.34 Aligned_cols=105 Identities=12% Similarity=0.181 Sum_probs=79.2
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.++|||+|||+|.++..+++.. ..+|+++|+|+.++ +.++.+...++... . +.+.+......++||+|+++..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~~nl~~n~l~~--~---~~~~D~~~~~~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSRATLAANGLEG--E---VFASNVFSDIKGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC--E---EEEcccccccCCCccEEEECCC
Confidence 4589999999999999998874 45899999999998 78888888776621 1 2223333334578999999988
Q ss_pred ccCcc--cchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 88 LLYVK--QYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 88 l~~~~--~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++... .......+++++.+.|+|||.++++..
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 63221 233557999999999999999988743
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-15 Score=104.80 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=76.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-------CCCcceeeccCCCCCCCC---CC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------TPALPHIKHSWGDAFPIP---NP 77 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~ 77 (175)
++.+|||+|||.|..+..||++ |.+|+|+|+|+.+++...+++...... ......+.+.++|..... .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 6689999999999999999987 999999999999984322221110000 000122344444544332 35
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.||.|+-..++.+. ..+.....++.+.++|+|||++++....
T Consensus 113 ~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 79999998877444 4666788999999999999987666443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-14 Score=100.93 Aligned_cols=140 Identities=8% Similarity=-0.015 Sum_probs=85.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCcc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD 80 (175)
....++.+|||+|||+|..+..+++..+ ..|+++|+++.|++ .+.++.... .++..+..+..+.. ....++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~-~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR-ELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH-HHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 3455788999999999999999988753 57999999999984 333333321 12233322222110 11134699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
+|++... .......+++++.++|||||.++++++... . .+.....++ .+...+.++++||
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~--~--------d~~~~~~~~-----~~~~~~~l~~aGF 203 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARS--I--------DVTKDPKEI-----FKEEIRKLEEGGF 203 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEeccc--c--------cCcCCHHHH-----HHHHHHHHHHcCC
Confidence 9986422 222334678999999999999999633210 0 000000011 1345688999999
Q ss_pred eeEEecc
Q 030558 161 EVKHLGS 167 (175)
Q Consensus 161 ~~~~~~~ 167 (175)
++.+..+
T Consensus 204 ~~i~~~~ 210 (226)
T PRK04266 204 EILEVVD 210 (226)
T ss_pred eEEEEEc
Confidence 9776633
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=101.21 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=87.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|.++..+++..+..++++|+++.++ +.++. .+. ..+..+..+.+ ++.+++||+|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~----~~~----~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVA----RGV----NVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHH----cCC----eEEEEEhhhcccccCCCCcCEEEEh
Confidence 35789999999999999999776677899999999987 44332 122 33333333323 3556799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--------CCCC--CCCC-ceE-eeeeccCCCcchhHHHH
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--------GTEG--LPWP-AFL-MSWRRRIGKEDETIFFT 153 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--------~~~~--~~~~-~~~-~~~~~~~~~~~~~~~~~ 153 (175)
.++++.. +...+++++.+.+++ .++..+...... ..+. ...+ .+. ....+.+ +..++.+
T Consensus 83 ~~l~~~~---d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~ 153 (194)
T TIGR02081 83 QTLQATR---NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFC---TIADFED 153 (194)
T ss_pred hHhHcCc---CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccC---cHHHHHH
Confidence 9995554 455889999887664 344322211000 0000 0000 011 0111112 3588999
Q ss_pred HHHHcCCeeEEe
Q 030558 154 SCENAGLEVKHL 165 (175)
Q Consensus 154 ~~~~~g~~~~~~ 165 (175)
+++++||++.+.
T Consensus 154 ll~~~Gf~v~~~ 165 (194)
T TIGR02081 154 LCGELNLRILDR 165 (194)
T ss_pred HHHHCCCEEEEE
Confidence 999999998775
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=103.16 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=73.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++.. +.+|+++|++++++ +.++++....+...++..+..+..+..+ ..++||+|+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii 147 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAII 147 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEE
Confidence 3467899999999999999988765 35899999999998 6777777766653223333333322222 346899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..++.+ . -+++.+.|+|||++++.
T Consensus 148 ~~~~~~~---~------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 148 VTAAAST---I------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred EccCcch---h------hHHHHHhcCcCcEEEEE
Confidence 9877622 2 24788999999998875
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-15 Score=97.40 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~~~ 87 (175)
|.+|||+|||+|.+++.+++....+++++|+++..+ +.++.+....+...++..+..+..+.. ...+++||+|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 568999999999999999888548899999999997 888888888776555555554443332 356789999999888
Q ss_pred ccCccc-----chHHHHHHHHHHhhcCCCCceeecc
Q 030558 88 LLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~-----~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+..... ......+++++.+.|+|||.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 632211 1134688999999999999888753
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=104.97 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=75.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+.+|||+|||+|.++..+++.. ..+++++|+++.++ +.++.... .++..+..+.. ..++.+++||+|++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~-~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAE-KLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchh-hCCCCCCceeEEEEhh
Confidence 45789999999999999998875 45689999999997 45443332 12233333332 3345667999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++++.. +...+++++.++|+|||.+++..+
T Consensus 107 ~l~~~~---~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 107 ALQWCD---DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhhcc---CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 984443 455999999999999999998743
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=103.23 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=76.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++...++..+..++.+. .++++||+|+++..
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 5789999999999999998865 56899999999998 88888888877643444444443222 33458999999743
Q ss_pred ccC-------------cc---------cchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLY-------------VK---------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~-------------~~---------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .+ .......+++++.+.|+|||++++.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 210 00 0112357788999999999988773
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-15 Score=102.60 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=80.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-CCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~i~ 83 (175)
.-...+|.|||||+|..+..++++. +..++|+|.|++|++++.++ . +...+..++.-... +..+|+++
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-l---------p~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-L---------PDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-C---------CCCceecccHhhcCCCCccchhh
Confidence 3345789999999999999998887 77899999999999544332 1 23344444444433 34799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG 124 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~ 124 (175)
++.++++.++.. .++..+...|.|||.+.+..+.....
T Consensus 98 aNAvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 98 ANAVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred hhhhhhhccccH---HHHHHHHHhhCCCceEEEECCCccCc
Confidence 999996666555 99999999999999999997776543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=101.33 Aligned_cols=106 Identities=9% Similarity=0.006 Sum_probs=70.6
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCC
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPD 78 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 78 (175)
...+.++.+|||+|||+|.++..++...+ ..|+++|+++.+++...+......+ +..+..+.... .....++
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~N----I~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPN----IVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCC----CEEEECCccChhhhhcccCC
Confidence 34566789999999999999999999864 4699999999875333332222222 23333332211 1223457
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|++.... .++...++.++.+.|||||.+++.
T Consensus 203 vDvV~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence 9999886542 233446667899999999998884
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=100.39 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=106.2
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCC------CCCCccEE
Q 030558 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPI------PNPDWDLI 82 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~fD~i 82 (175)
+|||||||||..+.++|+.+ ...-.-+|.++... ..+...+...+.....+.+.++..+. .+. ..++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 49999999999999999987 56678889988764 44444444444433335556666443 222 35589999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC----CCceEeeeeccCCCcchhHHHHHHHHc
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP----WPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
++.+++ |....+....+++.+.+.|+|||.+++- +.....+.+..+ +..++......++..|.+++.++++++
T Consensus 107 ~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~Y--GPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 107 FCINML-HISPWSAVEGLFAGAARLLKPGGLLFLY--GPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEe--CCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 999999 7777888899999999999999966654 433333222211 112333333455666778999999999
Q ss_pred CCeeEEecce
Q 030558 159 GLEVKHLGSR 168 (175)
Q Consensus 159 g~~~~~~~~~ 168 (175)
|++.++.-+|
T Consensus 184 GL~l~~~~~M 193 (204)
T PF06080_consen 184 GLELEEDIDM 193 (204)
T ss_pred CCccCccccc
Confidence 9987776443
|
The function of this family is unknown. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-15 Score=105.85 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=92.1
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l 88 (175)
+++||||||||..+..+... ..+++|+|+|.+|+.++..+ +.......- +....++ .....||+|.+.+++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK-----g~YD~L~~A--ea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK-----GLYDTLYVA--EAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred ceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc-----cchHHHHHH--HHHHHhhhccCCcccchhhhhHH
Confidence 68999999999999998665 88899999999998443222 221100000 0001122 345689999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEecc
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
-+....+ .++.-....|+|||.|.++.-..... ..|-.....++.. ........++..||++..+.+
T Consensus 199 ~YlG~Le---~~~~~aa~~L~~gGlfaFSvE~l~~~--------~~f~l~ps~RyAH-~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 199 PYLGALE---GLFAGAAGLLAPGGLFAFSVETLPDD--------GGFVLGPSQRYAH-SESYVRALLAASGLEVIAIED 265 (287)
T ss_pred Hhhcchh---hHHHHHHHhcCCCceEEEEecccCCC--------CCeecchhhhhcc-chHHHHHHHHhcCceEEEeec
Confidence 7766555 89999999999999999974333222 1122222223323 346677889999999888754
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=101.11 Aligned_cols=107 Identities=13% Similarity=0.229 Sum_probs=82.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.+.-|||||||+|..+..+... |...+|+|+|+.|++.+.++..+ . ..+..+.+..+|+.+++||-+|+..+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e-g------dlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE-G------DLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh-c------CeeeeecCCCCCCCCCccceEEEeee
Confidence 4677999999999999999776 77899999999999555554443 2 35678889999999999999998766
Q ss_pred ccCccc--------chHHHHHHHHHHhhcCCCCceeeccccCC
Q 030558 88 LLYVKQ--------YSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 88 l~~~~~--------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+..... ..-+..++..++.+|++|++.++..|..+
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 632111 12356678889999999999999866554
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=102.63 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=76.3
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++...++..+..++.+. .+.++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCC
Confidence 689999999999999998875 56899999999998 88888888777643444444443322 234589999997432
Q ss_pred c-------------Cccc---------chHHHHHHHHHHhhcCCCCceeec
Q 030558 89 L-------------YVKQ---------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 ~-------------~~~~---------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. +.+. ......+++++.+.|+|||.+++.
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 0010 122357889999999999988874
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-14 Score=100.29 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=103.0
Q ss_pred cEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCccEEEe
Q 030558 11 RCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWDLILA 84 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD~i~~ 84 (175)
+|||+|||.|.....+.+.- +..|++.|.||.++ +..+.+...... .+.....+... ..+...+++|+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e~--~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDES--RVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccchh--hhcccceeccchhccCCCCcCccceEEE
Confidence 79999999999998887753 24699999999997 666655544322 22222222221 22456779999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEee-eeccCCCc----chhHHHHHHHHcC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS-WRRRIGKE----DETIFFTSCENAG 159 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~g 159 (175)
..++ ..-..+.+..+++++.+++||||.+++-.|+..+....-+.+...+-.. |.|..+.. +.+.+.+++.++|
T Consensus 151 IFvL-SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 151 IFVL-SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEEE-eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcc
Confidence 9888 5556789999999999999999999998777665543333222222211 22222221 3578889999999
Q ss_pred CeeEEe
Q 030558 160 LEVKHL 165 (175)
Q Consensus 160 ~~~~~~ 165 (175)
|..+++
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 986655
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=106.99 Aligned_cols=112 Identities=20% Similarity=0.341 Sum_probs=74.5
Q ss_pred CCCcEEEeCCCccH----HHHHHHHhC------CCcEEEEeCChHHHHHHHHHHHhh----CCCC---------------
Q 030558 8 ERRRCIELGSGTGA----LAIFLRKAM------NLDITTSDYNDQEIEDNIAYNSTT----NGIT--------------- 58 (175)
Q Consensus 8 ~~~~vLDlGcG~G~----~~~~l~~~~------~~~v~~~D~s~~~l~~~~~~~~~~----~~~~--------------- 58 (175)
++.+|+|+|||+|. +++.+++.. ..+|+|+|+|+.|+ +.+++.... .+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL-EKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH-HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45789999999996 455555542 35799999999998 554433210 0000
Q ss_pred ---CC-cceeeccCCCCC--CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 59 ---PA-LPHIKHSWGDAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 59 ---~~-~~~~~~~~~~~~--~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.. -..+.+...+.. +.+.++||+|++.+++.|.. .+...++++++++.|+|||.+++...+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 00 012333333332 23467999999999985554 5677799999999999999999864433
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=104.63 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=77.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.+++.++.. +.+++|+|+++.|+ ..++.|....+... +.....+.. .++..+++||+|+++
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~~D~~-~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMV-AGARINLEHYGIED-FFVKRGDAT-KLPLSSESVDAIATD 255 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEecchh-cCCcccCCCCEEEEC
Confidence 446789999999999999887665 88999999999998 77777877766632 222222222 244456799999997
Q ss_pred CcccCcc-----cc-hHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVK-----QY-SNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~-----~~-~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+.... .. .....+++++.+.|+|||++++.
T Consensus 256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 5431100 01 22468999999999999988875
|
This family is found exclusively in the Archaea. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=105.41 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=72.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC----CccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP----DWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~fD~ 81 (175)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.|+ +.+.++.........+..+..+..+..+.... ...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 56889999999999999988876 57899999999999 55544444322212223333333332222222 2334
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++..++++ ...++...+++++++.|+|||.+++.
T Consensus 142 ~~~gs~~~~-~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGN-FTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccC-CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 545556644 44677889999999999999999875
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=100.58 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=73.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCcc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 80 (175)
...++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++....+. ..+.+..++... ...+.||
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~----~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGY----DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCC----CCeEEEECCcccCCCcCCCcC
Confidence 345789999999999999999888653 5899999999998 777777776655 234444444322 2346899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|++.... .. +.+.+.+.|+|||++++..
T Consensus 148 ~I~~~~~~---~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAG---PD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCc---cc------chHHHHHhhCCCcEEEEEE
Confidence 99987665 22 2246777899999988853
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=99.48 Aligned_cols=128 Identities=19% Similarity=0.315 Sum_probs=88.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||+|||+|.++..+++.. ..+++++|+++.++ +.++.+....+.. ++..+..+..+ .+.+++||+|+++..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~--~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-AVARKNAARLGLD-NVTFLQSDWFE--PLPGGKFDLIVSNPP 163 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhc--cCcCCceeEEEECCC
Confidence 4689999999999999998864 56899999999998 7777777776652 23333333322 234678999999765
Q ss_pred ccCccc-----------------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCC
Q 030558 88 LLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIG 144 (175)
Q Consensus 88 l~~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (175)
+..... ......+++++.++|+|||.+++...
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------------------- 218 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------------------- 218 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-------------------------
Confidence 421110 01124678999999999998877310
Q ss_pred CcchhHHHHHHHHcCCeeEEe
Q 030558 145 KEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 145 ~~~~~~~~~~~~~~g~~~~~~ 165 (175)
......+.+.++++||+...+
T Consensus 219 ~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 219 YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred ccHHHHHHHHHHhCCCCceEE
Confidence 011366788889999975444
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-14 Score=100.01 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=72.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++..+. +|+++|+++.++ +.++++....+. .++..+..+..+.. ...++||+|+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~-~~v~~~~~d~~~~~-~~~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGL-DNVIVIVGDGTQGW-EPLAPYDRIY 151 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCC-CCeEEEECCcccCC-cccCCCCEEE
Confidence 457889999999999999999887543 499999999998 788888877665 23333332322221 2245899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+.... . .+.+.+.+.|+|||++++..
T Consensus 152 ~~~~~---~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAG---P------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCc---c------cccHHHHHhcCcCcEEEEEE
Confidence 87654 2 23356788999999988864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=100.74 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=80.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+.+|||+|||.|.+++.+++.. ..+++.+|.|...+ +.+++|...|+.... .+..+.. ..+.. ++||.|++
T Consensus 156 ~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~--~v~~s~~-~~~v~-~kfd~Iis 230 (300)
T COG2813 156 PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT--EVWASNL-YEPVE-GKFDLIIS 230 (300)
T ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc--EEEEecc-ccccc-ccccEEEe
Confidence 3345599999999999999999975 46899999999998 899999999888321 1111111 11222 39999999
Q ss_pred CCcccCcccchH---HHHHHHHHHhhcCCCCceeeccc
Q 030558 85 SDILLYVKQYSN---LIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 85 ~~~l~~~~~~~~---~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+..+ |...... -.+++++..+.|++||.+.++..
T Consensus 231 NPPf-h~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 231 NPPF-HAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCc-cCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9997 4332221 24899999999999999988754
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-13 Score=97.49 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCC
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~ 86 (175)
+.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++. ..+..++.+..+ ...++||+|+++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 3589999999999999988764 56899999999998 788888876553 334434333222 1235799999987
Q ss_pred cccCccc-----------------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccC
Q 030558 87 ILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 143 (175)
Q Consensus 87 ~l~~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (175)
...-... .+-+..+++.+.+.|+|||++++.+..
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----------------------- 218 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----------------------- 218 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------------
Confidence 6421000 111357778888999999988874111
Q ss_pred CCcchhHHHHHHHHcCCeeEEecceE
Q 030558 144 GKEDETIFFTSCENAGLEVKHLGSRV 169 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (175)
....++.+.+++.||.........
T Consensus 219 --~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 219 --RQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred --chHHHHHHHHHHCCCCceeeEccc
Confidence 013667888888998755554433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=96.88 Aligned_cols=108 Identities=10% Similarity=0.037 Sum_probs=74.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~~ 84 (175)
.+.++||||||+|.++..+++.. ..+|+|+|+++.++ +.++++....+. .++..+..+..+..+ +.++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999998865 56899999999998 666666666555 233333333222111 33568999998
Q ss_pred CCcccCcccch------HHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQYS------NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~------~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+..- .|+... ....+++++.++|||||.+++.+
T Consensus 94 ~~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 7543 111110 01478999999999999998874
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=90.44 Aligned_cols=125 Identities=21% Similarity=0.242 Sum_probs=91.8
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CC-CCccE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PN-PDWDL 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~fD~ 81 (175)
...++.+++|+|||||+.++.++... ..+|+++|-+++++ +..++|.+..+. +++.+.-++.... .+ .+||.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~----~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGV----DNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCC----CcEEEEeccchHhhcCCCCCCE
Confidence 45678999999999999999998543 67899999999997 888999988775 4454444443332 11 27999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC-
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL- 160 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 160 (175)
|+....- .+..+++.+...|+|||++++.... .++.....+.+++.|+
T Consensus 106 iFIGGg~-------~i~~ile~~~~~l~~ggrlV~nait------------------------lE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIGGGG-------NIEEILEAAWERLKPGGRLVANAIT------------------------LETLAKALEALEQLGGR 154 (187)
T ss_pred EEECCCC-------CHHHHHHHHHHHcCcCCeEEEEeec------------------------HHHHHHHHHHHHHcCCc
Confidence 9987552 3449999999999999999984111 2234566777888888
Q ss_pred eeEEe
Q 030558 161 EVKHL 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
++..+
T Consensus 155 ei~~v 159 (187)
T COG2242 155 EIVQV 159 (187)
T ss_pred eEEEE
Confidence 55444
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=102.91 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.++ +.++++. ..+.....+. ..+++.+++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~-~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASS-HRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeec-ccCCCcCCceeEEE
Confidence 45779999999999999887753 24699999999998 5544331 1122233222 34567788999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+... + ..++++.|+|||||.+++..+..
T Consensus 157 ~~~~----~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 157 RIYA----P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EecC----C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 8533 1 34578999999999999875443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-13 Score=102.06 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=86.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++. ++..+..++.+......++||+|+++.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 45789999999999999988753 67899999999998 788888876554 344444444322111235799999987
Q ss_pred cccCccc-----------------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccC
Q 030558 87 ILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 143 (175)
Q Consensus 87 ~l~~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (175)
.. .... .+....+++++.+.|+|||.+++.+..
T Consensus 328 PY-I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------------------- 383 (423)
T PRK14966 328 PY-IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------------------- 383 (423)
T ss_pred CC-CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----------------------
Confidence 53 2110 012346777778899999976663111
Q ss_pred CCcchhHHHHHHHHcCCeeEE
Q 030558 144 GKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~~~~ 164 (175)
...+...+++++.||...+
T Consensus 384 --~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 384 --DQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred --cHHHHHHHHHHHCCCcEEE
Confidence 1136777888888886433
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=99.74 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCccHHH-HHHHH-hC-CCcEEEEeCChHHHHHHHHHHHhh-CCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALA-IFLRK-AM-NLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~-~~l~~-~~-~~~v~~~D~s~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
++++|+|||||.|-++ +.+++ .. +.+++++|+++.++ +.+++.... .++..++.+...+..+..+ ..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEE
Confidence 6789999999987554 44443 22 56799999999998 666666643 5554555665555444321 246899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+. ++.++ +.++..++++++.+.|+|||.+++..
T Consensus 201 ~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-ccccc-ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 55233 23456699999999999999888864
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=96.42 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=71.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+. .++..+..+..+.++.....+|.++.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEE
Confidence 3467899999999999999987653 57899999999998 788888776655 22333322222212222234566554
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. ...+..+++++.+.|+|||++++.
T Consensus 116 ~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 116 EG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred EC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 21 123458999999999999988885
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=97.13 Aligned_cols=147 Identities=14% Similarity=0.179 Sum_probs=95.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
...++||||+|.|..+..++.. -.+|++++.|+.|. ..+++ .+. ..+. .++....+.+||+|.|-++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr-~rL~~----kg~----~vl~---~~~w~~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMR-WRLSK----KGF----TVLD---IDDWQQTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHH-HHHHh----CCC----eEEe---hhhhhccCCceEEEeehhh
Confidence 4578999999999999999776 66799999999995 44432 223 1111 0112223458999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC-CCCC-CCC-CCCCCc-eEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN-EQGE-GTE-GLPWPA-FLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~-~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+ ..-..+..+++++++.|+|+|++++++.-. .... ..- ....|. .+......+.. -...|.+.++.+||+++
T Consensus 161 L---DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~-~v~~l~~v~~p~GF~v~ 236 (265)
T PF05219_consen 161 L---DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEE-QVSSLVNVFEPAGFEVE 236 (265)
T ss_pred h---hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHH-HHHHHHHHHHhcCCEEE
Confidence 9 444456699999999999999999983222 1111 111 011111 12111122222 23566688999999999
Q ss_pred EecceEEE
Q 030558 164 HLGSRVYC 171 (175)
Q Consensus 164 ~~~~~~~~ 171 (175)
..+.-.|+
T Consensus 237 ~~tr~PYL 244 (265)
T PF05219_consen 237 RWTRLPYL 244 (265)
T ss_pred EEeccCcc
Confidence 99877664
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=104.91 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.++.|...++...++..+..++.+. ...++||+|+++..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCC
Confidence 4689999999999999988764 67899999999998 88888887776644444444443322 23458999999654
Q ss_pred ccC--------------cc---------cchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLY--------------VK---------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~--------------~~---------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- .+ .......+++++.+.|+|||.+++.
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 211 00 0112355778888999999988773
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=95.95 Aligned_cols=126 Identities=18% Similarity=0.294 Sum_probs=85.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.++ +.++.+.. ......+..+..++.+. ..+++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l-~~a~~n~~-~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL-AVARRNAK-HGLGARVEFLQGDWFEP--LPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHH-hCCCCcEEEEEccccCc--CCCCceeEEEEC
Confidence 356789999999999999998875 47899999999998 77777766 22222334444443222 224689999997
Q ss_pred CcccCcc-----------------------cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeecc
Q 030558 86 DILLYVK-----------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 142 (175)
Q Consensus 86 ~~l~~~~-----------------------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (175)
..+.... .......+++++.+.|+|||.+++.+. +
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g----------------------~ 240 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG----------------------Y 240 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------c
Confidence 5431100 112345788888899999998877310 0
Q ss_pred CCCcchhHHHHHHHHcCCe
Q 030558 143 IGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~ 161 (175)
. ....+.+.+++.||.
T Consensus 241 ~---~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 241 D---QGEAVRALLAAAGFA 256 (275)
T ss_pred h---HHHHHHHHHHhCCCc
Confidence 1 125677888889986
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=98.21 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=70.1
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--CCCccEEEeCCc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~i~~~~~ 87 (175)
+.++|+|||+|..++.++.. ..+|+|+|+|+.|| +.+++....... .....+.-.+..++. +++.|+|++..+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~~~~~y~---~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKHPPVTYC---HTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcCCCcccc---cCCccccccccccccCCCcceeeehhhhh
Confidence 37999999999777777776 77899999999998 555443322211 111112222223333 789999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+ ||.+.+ +++++++|+||+.|-++.+
T Consensus 110 ~-HWFdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 V-HWFDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred H-HhhchH---HHHHHHHHHcCCCCCEEEE
Confidence 8 888777 9999999999988844433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=97.48 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=76.8
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++...++..+..++.+. +..++||+|+++...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCC
Confidence 689999999999999998875 46899999999998 88888888777643345555444332 233489999997332
Q ss_pred -------------cCccc---------chHHHHHHHHHHhhcCCCCceeec
Q 030558 89 -------------LYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 -------------~~~~~---------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+. ......+++++.+.|+|||.+++.
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11110 124567889999999999988774
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=94.29 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (175)
.+++|||+|||+|.+++.++++. +.+|+++|+|+.++ +.++++.. .+.+..++...+ .+.+||+|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~---------~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP---------EAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc---------CCEEEECchhhhcccCCCcEEEEc
Confidence 35789999999999999887764 57899999999998 55554421 122233333332 24589999999
Q ss_pred CcccCcccchH------------------HHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030558 86 DILLYVKQYSN------------------LIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 86 ~~l~~~~~~~~------------------~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
..+++.. ..+ +.+.+......|+|+|.+++. +.. .+.+. . ..+
T Consensus 134 PPF~~l~-~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss----------~~~y~----~---sl~ 194 (279)
T PHA03411 134 PPFGKIN-TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSG----------RPYYD----G---TMK 194 (279)
T ss_pred CCccccC-chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eec----------ccccc----c---cCC
Confidence 9875432 221 235556666778888865553 111 11111 1 224
Q ss_pred hhHHHHHHHHcCCeeE
Q 030558 148 ETIFFTSCENAGLEVK 163 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~ 163 (175)
.+++.++++++||...
T Consensus 195 ~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 195 SNKYLKWSKQTGLVTY 210 (279)
T ss_pred HHHHHHHHHhcCcEec
Confidence 5889999999999743
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=81.88 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=72.8
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC
Q 030558 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 90 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (175)
+++|+|||+|..+..+++....+++++|+++..+ ..+++....... ..+..+..+..+......++||+|++..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5899999999999998874477899999999887 555432222222 23334433333322224568999999998843
Q ss_pred cccchHHHHHHHHHHhhcCCCCceeec
Q 030558 91 VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 91 ~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .+....+++.+.+.++|+|.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 446669999999999999988774
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=93.53 Aligned_cols=99 Identities=10% Similarity=0.123 Sum_probs=67.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIPN 76 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 76 (175)
..++.+|||||||+|.++..+++..+ ..|+|+|+++ |. . . ..+..+..+..+.. ++.+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-~----------~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-P----------I-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-C----------C-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 35678999999999999999988753 5799999988 31 0 1 12233444433321 2446
Q ss_pred CCccEEEeCCcccCcccc--h------HHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQY--S------NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~--~------~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++||+|++..+.+..... + ....+++++.++|+|||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 789999997655332211 0 1247899999999999988884
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=92.79 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=71.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++. ..+|+++|+++.++ +.++++....+.. .+.+..++... . ..++||+|+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~-~~a~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQ-WEAKRRLKQLGLH----NVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHH-HHHHHHHHHCCCC----ceEEEECCcccCCCcCCCcCEEE
Confidence 446789999999999999988776 45899999999997 6777777665552 23333332221 1 236899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+...+ . .+.+.+.+.|+|||++++...
T Consensus 150 ~~~~~---~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAA---P------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCc---h------hhhHHHHHhcCCCcEEEEEEc
Confidence 98665 2 223567889999999888654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-13 Score=100.14 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=82.7
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccE
Q 030558 2 HHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
.|..+++++.|||+|||||.+++..|+.++.+|+|+|.|.-+ +.+......|+....+..+.....+ ..++.++.|+
T Consensus 54 ~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEd-i~LP~eKVDi 130 (346)
T KOG1499|consen 54 QNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVED-IELPVEKVDI 130 (346)
T ss_pred cchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEE-EecCccceeE
Confidence 466788999999999999999999999988889999998843 6677777788886555555444433 2444689999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
|++-++=|+......+..++-.-=+.|+|||.++=
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 99988765544333334455555579999995543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=90.70 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=79.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCCCccEE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~fD~i 82 (175)
...++.+|||||||+|..+..+++. ..+|+.+|..+... +.++++....+. .++...++|... + +...||.|
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~-~~A~~~L~~lg~----~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELA-EQARRNLETLGY----ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHH-HHHHHHHHHcCC----CceEEEECCcccCCCCCCCcCEE
Confidence 4567899999999999999999887 55999999999876 888888888777 446666666554 3 34689999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+.+... ...+ +.+.+.|+|||++++-+.
T Consensus 143 ~Vtaaa---~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAA---PEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeecc---CCCC------HHHHHhcccCCEEEEEEc
Confidence 998877 4444 457788999999988644
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=99.25 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i~~~ 85 (175)
.+..+||||||+|.++..+|+.. ...++|+|+++.++ +.+.++....++ .++..+..+.... ..++++++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 35689999999999999999875 56899999999998 666666666665 2233333332211 13567899999987
Q ss_pred CcccCcccch----HHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYS----NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~----~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... -|.... ....+++++.|+|+|||.+.+.
T Consensus 200 FPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 543 121111 1148899999999999999997
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=91.66 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=66.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 75 (175)
...++.+|||+|||+|.++..+++.. ..+|+++|+|+.+ .. ..+..+..+..+.. ...
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~----~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI----ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC----CCceEEEeeCCChhHHHHHHHHhC
Confidence 44678999999999999999887764 3469999999843 01 11233333332211 134
Q ss_pred CCCccEEEeCCccc--------CcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILL--------YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~--------~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++||+|++..+.. +....+.+..+++.+.++|+|||++++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 56899999854321 1111123468999999999999988884
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=95.19 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=73.6
Q ss_pred cEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030558 11 RCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
+|||+|||||..++.+++... .+|+|+|+|+.++ +.+++|...+++ .++..+..+|.+. ..++||+|++|...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~---~~~~fDlIVsNPPY- 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEP---LRGKFDLIVSNPPY- 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeecccc---cCCceeEEEeCCCC-
Confidence 799999999999999999863 4899999999998 899999999887 3333333333333 33489999998653
Q ss_pred Cccc-----------------------chHHHHHHHHHHhhcCCCCceee
Q 030558 90 YVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 90 ~~~~-----------------------~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-... .+....++.++.+.|+|||.+++
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 2221 11245677778888999886666
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-13 Score=109.42 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=80.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|.+++.+++.++.+|+++|+|+.++ +.+++|...++.. .++..+..+..+.+....++||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 46899999999999999999987555799999999998 8999999998874 344444444322222124689999996
Q ss_pred CcccCc--------ccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYV--------KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~--------~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+-. ....+...++..+.++|+|||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 543111 11224557888899999999988774
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=98.81 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=78.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~ 83 (175)
..+|.+|||+|||+|..+..+++... .+|+++|+++.++ +.++++....+.. +..+..+..+... ...++||.|+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEE
Confidence 34688999999999999999988753 5899999999998 7888888877662 2233322222112 2346899999
Q ss_pred eCCcccCc------------ccc-------hHHHHHHHHHHhhcCCCCceeecccc
Q 030558 84 ASDILLYV------------KQY-------SNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~------------~~~-------~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+....... ... ..+.+++..+.+.|+|||++++++..
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 64432110 001 12357899999999999999987543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=97.85 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=77.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCC---CCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP---IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~fD~ 81 (175)
..++++|||+|||+|.+++.++.....+|+++|+|+.++ +.+++|...+++. .++..+..+..+.+. ...++||+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 346889999999999999887766455899999999998 8889999998873 234444433322221 12458999
Q ss_pred EEeCCcccCcccch-------HHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYS-------NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~-------~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++.... +..... ....++....++|+|||.++..
T Consensus 297 VilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 297 IVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred EEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9987664 333221 2345556778999999977764
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-13 Score=89.69 Aligned_cols=138 Identities=20% Similarity=0.274 Sum_probs=95.1
Q ss_pred CCCccccCCCcEEEeCCC-ccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCC--CcceeeccC-CCCCCCC
Q 030558 1 MHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITP--ALPHIKHSW-GDAFPIP 75 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG-~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~ 75 (175)
++++....|++|||+|.| +|..++.+|... ...|+.+|-+...+ ++.++....|.... .+..+...+ +......
T Consensus 22 l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~e 100 (201)
T KOG3201|consen 22 LRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQE 100 (201)
T ss_pred HhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhcccccccceehhhHHHHhhhHHHHh
Confidence 356777789999999999 577777766543 56799999999997 77776666653321 222223332 2333334
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHH
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 155 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (175)
-.+||+|++++++|+.+..+ .+++.+.+.|+|.|.-.+. +.+|.. +...|.+.+
T Consensus 101 q~tFDiIlaADClFfdE~h~---sLvdtIk~lL~p~g~Al~f--------------------sPRRg~---sL~kF~de~ 154 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHHE---SLVDTIKSLLRPSGRALLF--------------------SPRRGQ---SLQKFLDEV 154 (201)
T ss_pred hCcccEEEeccchhHHHHHH---HHHHHHHHHhCcccceeEe--------------------cCcccc---hHHHHHHHH
Confidence 45899999999997777665 7778888889999964442 222222 348888888
Q ss_pred HHcCCeeEEe
Q 030558 156 ENAGLEVKHL 165 (175)
Q Consensus 156 ~~~g~~~~~~ 165 (175)
+..||.+...
T Consensus 155 ~~~gf~v~l~ 164 (201)
T KOG3201|consen 155 GTVGFTVCLE 164 (201)
T ss_pred HhceeEEEec
Confidence 9999877644
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=93.33 Aligned_cols=152 Identities=12% Similarity=0.098 Sum_probs=90.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeec-cCCCCCC---CCCCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKH-SWGDAFP---IPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~---~~~~~fD~ 81 (175)
.+.++||||||+|.+...++.. .+.+++|+|+++.++ +.+++|...+ ++..++..... +..+... ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQAL-ASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 4688999999999877766554 377899999999998 8999999998 67554444321 1111111 23568999
Q ss_pred EEeCCcccCcccchHHH---HHHHHH----------------HhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeecc
Q 030558 82 ILASDILLYVKQYSNLI---KSLSVL----------------LKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 142 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~---~~l~~l----------------~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (175)
|+|+..+| ....+... +-.+.+ .+++.+||.+.+......... .+ .....|.......
T Consensus 193 ivcNPPf~-~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~-~~-~~~~gwftsmv~k 269 (321)
T PRK11727 193 TLCNPPFH-ASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK-AF-AKQVLWFTSLVSK 269 (321)
T ss_pred EEeCCCCc-CcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH-HH-HhhCcEEEEEeec
Confidence 99999974 33222111 111122 233446776666533332221 11 1122344443333
Q ss_pred CCCcchhHHHHHHHHcCCeeEEe
Q 030558 143 IGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.. +.+.+.+.+++.|..-..+
T Consensus 270 k~--~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 270 KE--NLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred cC--CHHHHHHHHHHcCCceEEE
Confidence 32 3688999999999854443
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=97.86 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=77.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++....+.. .+..+..+..+..+...++||+|+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl 325 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKIL 325 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEE
Confidence 3467899999999999999998865 46899999999998 7888888877762 233333332222211236899999
Q ss_pred eCCcccCcc------c------ch-------HHHHHHHHHHhhcCCCCceeecccc
Q 030558 84 ASDILLYVK------Q------YS-------NLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~~------~------~~-------~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+........ + .. ....+++++.+.|||||++++++..
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 754321110 0 01 1246899999999999999876433
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.3e-12 Score=97.92 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=79.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+|.+|||+|||+|..+..++... +.+|+++|+++.++ +.++.+....+.. .+..+..+..+......++||.|+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence 3467899999999999999998865 46899999999998 7888888776662 222332222211113356899999
Q ss_pred eCCcccCc---ccc----------------hHHHHHHHHHHhhcCCCCceeeccccCC
Q 030558 84 ASDILLYV---KQY----------------SNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 84 ~~~~l~~~---~~~----------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+....... ... ..+.+++.++.+.|+|||.+++++....
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 73322111 100 1346789999999999999998865543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=89.16 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=74.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.+++.++.+...+|+++|+++..+ +.+++|.+.++.. ++..+..++.+.++....+||+|++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECC
Confidence 45789999999999999976566567899999999997 7888888877652 333333333222222234799999987
Q ss_pred cccCcccchHHHHHHHHHHh--hcCCCCceeecccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLTK 120 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~~~~ 120 (175)
.+ .....+ .+++.+.. .++|++.+++.+..
T Consensus 130 Py-~~g~~~---~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 130 PF-RKGLLE---ETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC-CCChHH---HHHHHHHHCCCcCCCcEEEEEecC
Confidence 74 333223 45555544 37888887776544
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.9e-12 Score=89.19 Aligned_cols=110 Identities=21% Similarity=0.233 Sum_probs=76.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-------CcceeeccCCCCCCCCC--
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-------ALPHIKHSWGDAFPIPN-- 76 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-- 76 (175)
..++.+||..|||.|.....||+. |.+|+|+|+|+..++...+++........ ....+.+..+|.+....
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 345679999999999999999987 88999999999988444343332111110 11233444556555332
Q ss_pred -CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 -PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 -~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++||+|+=..++ +....+...+..+.+.++|+|||++++.
T Consensus 114 ~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 114 VGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred cCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 379999998887 4445778889999999999999994443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-11 Score=80.94 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=84.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..+.|++|+|+|||||++++..+-.+...|+|+|++++++ +.++.|... ....+..+. . +.......||.+++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~--l~g~v~f~~---~-dv~~~~~~~dtvim 114 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEE--LLGDVEFVV---A-DVSDFRGKFDTVIM 114 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHh--hCCceEEEE---c-chhhcCCccceEEE
Confidence 4568899999999999999999887668899999999998 788878776 222333332 2 23334567899999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
+..+--+-...+ ..++..+.+..+ .+.+ .+ ... +.+...+..+..|+++..
T Consensus 115 NPPFG~~~rhaD-r~Fl~~Ale~s~----vVYs------------------iH----~a~--~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 115 NPPFGSQRRHAD-RPFLLKALEISD----VVYS------------------IH----KAG--SRDFVEKFAADLGGTVTH 165 (198)
T ss_pred CCCCccccccCC-HHHHHHHHHhhh----eEEE------------------ee----ccc--cHHHHHHHHHhcCCeEEE
Confidence 877633322222 345555554431 1111 11 000 235555667888888777
Q ss_pred ecceEEEE
Q 030558 165 LGSRVYCI 172 (175)
Q Consensus 165 ~~~~~~~i 172 (175)
...-.|+|
T Consensus 166 ~~~~~~~i 173 (198)
T COG2263 166 IERARFPI 173 (198)
T ss_pred EEEEEEec
Confidence 76655554
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.4e-12 Score=94.04 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=69.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++..+. .|+++|+++.++ +.++++....+. ..+..+..+..+. ....++||+|+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~-~nV~~i~gD~~~~-~~~~~~fD~Ii 154 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGI-ENVIFVCGDGYYG-VPEFAPYDVIF 154 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEeCChhhc-ccccCCccEEE
Confidence 446789999999999999999887543 599999999998 777777776665 2233332221111 12235799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...+ . .....+.+.|+|||++++.
T Consensus 155 ~~~g~---~------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 155 VTVGV---D------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ECCch---H------HhHHHHHHhcCCCCEEEEE
Confidence 87554 2 2224567889999998875
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-12 Score=91.35 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=76.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f 79 (175)
.++++|||+|||+|..++.++... +.+|+++|++++++ +.++.+....+...++..+..+..+.++ ...++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 467899999999999888887754 46899999999997 8888898888875444444333322221 124689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+.-.- .+.....+..+.+.++|||.+++-
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99987421 344558899999999999977763
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=92.84 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++++|||||||+|.++..+++.. +.+|+++|+++.++ +.++++........++..+..+..+.++...++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 46789999999999999987765 56899999999998 6766665443221222222222111122234689999974
Q ss_pred cccCcccch---HHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~---~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ .....+ ....+++++.+.|+|||++++.
T Consensus 144 ~~-~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GF-DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CC-CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 21 211111 1248999999999999999885
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-12 Score=88.49 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=75.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCC-CCCcc--------------------
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGI-TPALP-------------------- 62 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~-~~~~~-------------------- 62 (175)
++..++.+|||||.+|.+++.+|+.+++. |.|+||++..| +.+.++++...- ...+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhccccccccccccCCCccccccccccccccccc
Confidence 46678999999999999999999988655 99999999887 555555433211 00000
Q ss_pred -----------------eeeccCCCCCCCCCCCccEEEeCCcccCccc----chHHHHHHHHHHhhcCCCCceeec
Q 030558 63 -----------------HIKHSWGDAFPIPNPDWDLILASDILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 63 -----------------~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..+...+.+......||+|+|-.+. .|-+ .+-+..+++++++.|.|||.+++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiT-kWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSIT-KWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEee-eeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000011122345689999986553 3222 356899999999999999988884
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-12 Score=87.63 Aligned_cols=106 Identities=22% Similarity=0.347 Sum_probs=79.0
Q ss_pred CCCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030558 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
.+||+...|++|||+|+|+|..++..++.+...|++.|+.|... .++..|...|+.. +.+-..+... .+..||
T Consensus 72 ~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~-----i~~~~~d~~g-~~~~~D 144 (218)
T COG3897 72 DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS-----ILFTHADLIG-SPPAFD 144 (218)
T ss_pred hcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce-----eEEeeccccC-CCccee
Confidence 36899999999999999999999999999888899999998875 8889898888862 2222223333 667899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++++.+++|...... +++.-..++...|-.+++
T Consensus 145 l~LagDlfy~~~~a~---~l~~~~~~l~~~g~~vlv 177 (218)
T COG3897 145 LLLAGDLFYNHTEAD---RLIPWKDRLAEAGAAVLV 177 (218)
T ss_pred EEEeeceecCchHHH---HHHHHHHHHHhCCCEEEE
Confidence 999999996555333 777744444444443433
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=97.16 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=72.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|+ +.+++|...++. ..+..+..++.+.+ ++.+++||+|+
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al-~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMV-ERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHH-HHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 45789999999999999999887 57899999999998 788888887776 23444444443222 23456899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...- . .+...++.+.+ ++|++.+|++
T Consensus 373 ~dPPr---~---g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 373 LDPPR---A---GAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred ECcCC---c---ChHHHHHHHHh-cCCCeEEEEE
Confidence 86553 1 12255655555 6888877775
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-12 Score=88.74 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=86.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
...+.||.|||.|+.+..+......+|..+|+.+.-+ +.++........ .+..+ .... ++....+++||+|++-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~~--~v~~~~~~gL-Q~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDNP--RVGEFYCVGL-QDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGGC--CEEEEEES-G-GG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccCC--CcceEEecCH-hhccCCCCcEeEEEehH
Confidence 4578999999999999877665577899999999887 555544332111 11111 1111 23333456999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
++-|.. .+++..+|++....|+|+|.+++-..........+-...+.+ ..+...|.+++++||+++...
T Consensus 131 ~lghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSv---------TRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 131 CLGHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSV---------TRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp -GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEE---------EEEHHHHHHHHHHCT-EEEEE
T ss_pred hhccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCee---------ecCHHHHHHHHHHcCCEEEEe
Confidence 996655 678999999999999999977775333221111111111111 113488999999999997664
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=85.91 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=70.5
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc-
Q 030558 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL- 88 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l- 88 (175)
+|||||||+|.+...|++.. ....+|+|+|+.++ +.++...+..+....+.+.+.+..+. .+..++||+|+--..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999999999975 33499999999997 55555555555543355555444433 4566788888753322
Q ss_pred --cCccc--chHHHHHHHHHHhhcCCCCceeec
Q 030558 89 --LYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 --~~~~~--~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
--.++ ...+.-.+..+.+.|+|||+|+|+
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 11111 112234566777888999988886
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=102.30 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=76.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCC---------------CCcceeeccCCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT---------------PALPHIKHSWGDA 71 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 71 (175)
++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.++ +.+++|...++.. .++..+.-++.+.
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al-~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV-KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 46789999999999999998875 46899999999998 8888888876432 1233444444333
Q ss_pred CCCCCCCccEEEeCCcccCccc------------------------------------chHHHHHHHHHHhhcCCCCcee
Q 030558 72 FPIPNPDWDLILASDILLYVKQ------------------------------------YSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~------------------------------------~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
.+.....||+|+++-.. -... ..-..+++++..+.|+|||.++
T Consensus 197 ~~~~~~~fDlIVSNPPY-I~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQ-ILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred ccccCCceEEEEECCCc-CCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 32112369999997542 1000 0112567778888999999888
Q ss_pred ecccc
Q 030558 116 GHLTK 120 (175)
Q Consensus 116 ~~~~~ 120 (175)
+-+..
T Consensus 276 lEiG~ 280 (1082)
T PLN02672 276 FNMGG 280 (1082)
T ss_pred EEECc
Confidence 75433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=95.98 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=78.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CC--CCCCcc
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PI--PNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~fD 80 (175)
..+|.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++....+.. + .+....++.. +. ..++||
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~--~-~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLT--I-KAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCC--e-EEEEeccccccccccccccccC
Confidence 34678999999999999999988653 6899999999998 7788888877763 1 1222223322 21 356899
Q ss_pred EEEeCC------cccCcccc-------------hHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 81 LILASD------ILLYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 81 ~i~~~~------~l~~~~~~-------------~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.|++.. ++...++. ..+..++.++.+.|||||++++++...
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999632 22111110 124689999999999999999985554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-12 Score=92.02 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=72.1
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCCCc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNPDW 79 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~f 79 (175)
....+|.+|||||||+|..+..++...+. .|+++|+++..+ +.+++++...+. .++.+..++... . ....|
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~----~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGI----DNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTT----HSEEEEES-GGGTTGGG-SE
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhcc----CceeEEEcchhhccccCCCc
Confidence 34668999999999999999999887654 599999999887 777888887666 344444444322 1 24589
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
|.|+++... ...+ ..+.+.|++||++++-..
T Consensus 143 D~I~v~~a~---~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAV---PEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBB---SS--------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeecc---chHH------HHHHHhcCCCcEEEEEEc
Confidence 999999877 3333 457888999999988643
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=89.87 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=77.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i 82 (175)
.+|.+|||+|||+|..+..+++.. ...|+++|+++.++ +.++++....+.. .+.....+ ..+...+.||.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~----~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVL----NVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC----cEEEecCCHHHhhhhccCCCEE
Confidence 467899999999999999988865 34799999999998 7888888877662 22222222 222234569999
Q ss_pred EeCCcccC------ccc------c-------hHHHHHHHHHHhhcCCCCceeeccccCC
Q 030558 83 LASDILLY------VKQ------Y-------SNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 83 ~~~~~l~~------~~~------~-------~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
++...... .++ . ..+.++++.+.+.+||||++++++....
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 97433211 000 0 1235699999999999999988854443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=95.64 Aligned_cols=112 Identities=22% Similarity=0.187 Sum_probs=77.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i 82 (175)
..+|.+|||+|||+|..+..+++.. +.+|+++|+|+.++ +.++++....+. ..+.+..++.... .+++||+|
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~----~~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGI----TIIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCC----CeEEEEeCcccccccCCCCCEE
Confidence 3467899999999999998887754 35899999999998 777778777666 2233333332222 34589999
Q ss_pred EeCC------cccCcc------cch-------HHHHHHHHHHhhcCCCCceeeccccCC
Q 030558 83 LASD------ILLYVK------QYS-------NLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 83 ~~~~------~l~~~~------~~~-------~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
++-. ++...+ ... .+..++.++.+.|+|||++++.+....
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9621 111110 011 234689999999999999999865553
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=95.76 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=78.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCcc
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD 80 (175)
..+|.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++....+.. .+..+..+..+.. +...++||
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCC
Confidence 3467899999999999999998865 34799999999998 7888888887762 2233322222111 12346899
Q ss_pred EEEeCC------cccCcccc-------------hHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 81 LILASD------ILLYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 81 ~i~~~~------~l~~~~~~-------------~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.|++.. ++...++. ..+.+++.++.+.|||||++++++...
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999732 22111110 114688999999999999988774443
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=86.08 Aligned_cols=111 Identities=10% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC-----CC--CCCcceeeccCCCCCCCC-----
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-----GI--TPALPHIKHSWGDAFPIP----- 75 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~----- 75 (175)
++.+||..|||.|.....||.. |.+|+|+|+|+..++...+++.... +. ......+.+..+|.+...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 4689999999999999999887 8899999999999844333221100 00 001123444455555432
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.+.||+|+-..++... ..+...+..+.+.++|+|||.+++....
T Consensus 122 ~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 122 LPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2579999998887444 4677889999999999999988887543
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=88.85 Aligned_cols=143 Identities=11% Similarity=0.065 Sum_probs=80.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|||+|||||.++..+++.+..+|+|+|+++.|+...++.+.+.... ...++. ..|.+.. ..-..+|+++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~--~~~ni~~~~~~~~~-~d~~~~DvsfiS 150 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL--ERTNIRYVTPADIF-PDFATFDVSFIS 150 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe--ecCCcccCCHhHcC-CCceeeeEEEee
Confidence 578899999999999999999985667999999998874434433221000 111222 2332222 122367777665
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.. .++..+.+.|+| |.+++..-++.+...+.....+...-.-.+ ......+...+.+.||++..+
T Consensus 151 ~~-----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 LI-----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAI---ALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred hH-----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHH---HHHHHHHHHHHHcCCCeEeeE
Confidence 33 346678888899 766655322221111110111111000000 112367777788889987766
Q ss_pred cc
Q 030558 166 GS 167 (175)
Q Consensus 166 ~~ 167 (175)
..
T Consensus 216 ~~ 217 (228)
T TIGR00478 216 IF 217 (228)
T ss_pred EE
Confidence 43
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-11 Score=90.83 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=68.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.+++.+++. +.+|+|+|+++.++ +.++++...++. .++..+..+..+......+.||+|++...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av-~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAI-ACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHH-HHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 5689999999999999999886 68999999999998 788888888776 33344433332222212357999998754
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
- . .... .+++ +...++|++.+|++
T Consensus 250 r-~-G~~~---~~~~-~l~~~~~~~ivyvs 273 (315)
T PRK03522 250 R-R-GIGK---ELCD-YLSQMAPRFILYSS 273 (315)
T ss_pred C-C-CccH---HHHH-HHHHcCCCeEEEEE
Confidence 2 1 1111 3333 33446777766665
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=89.90 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCC---CCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAF---PIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~fD~i 82 (175)
++++||+||||+|..+..+++.. ..+|+++|+++.++ +.+++........ ..-+.+.+..+|.. +...++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 46899999999999999988864 46799999999998 6666655432110 01123333333332 2245689999
Q ss_pred EeCCcccCcccchH--HHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~--~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++...--..+ ... -..+++.+.+.|+|||.+++.
T Consensus 155 i~D~~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9853211111 111 247788999999999988875
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-11 Score=85.49 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=82.7
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc----CCCCCCCCCC
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS----WGDAFPIPNP 77 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 77 (175)
+....++..+||+|||+|..++.+++.. .+.|+|+|.|+.++ ..+..|.+...+...+..+... +-+..+..++
T Consensus 143 ~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 143 NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHH-HHHHHHHHHHhhcCceEEEecccccccccccccccC
Confidence 4456677789999999999999988865 56699999999987 7777777777776666666443 3344456678
Q ss_pred CccEEEeCCcccCcccc-----------------------hHHHHHHHHHHhhcCCCCceeeccc
Q 030558 78 DWDLILASDILLYVKQY-----------------------SNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~-----------------------~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++|+++++...-...+. ..+..++.-+.|.|+|||.+.+...
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99999998663222211 1234455567789999997777543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=84.14 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=80.0
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCcc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD 80 (175)
.++.+|++|+|.|.|+|.++.+|+...+ .+|+.+|+.++.. +.+.+|....++... +.+..+|... ...+.||
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~---v~~~~~Dv~~~~~~~~vD 165 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDR---VTLKLGDVREGIDEEDVD 165 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccc---eEEEeccccccccccccC
Confidence 4677899999999999999999987554 4799999999887 888888888766433 3333444333 2233899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.|+. +.+++..+++.+.+.|+|||.+++..+.
T Consensus 166 av~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 166 AVFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EEEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 9886 3445669999999999999988885443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=91.96 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=70.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-C-------CCcceeeccCC-----CCCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-T-------PALPHIKHSWG-----DAFPI 74 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-~-------~~~~~~~~~~~-----~~~~~ 74 (175)
++.+|||||||-|....-.....-..++|+|++...|+++..|..+.... . -....+..+.. +.++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999988777776665677999999999986555544221111 0 01111222111 11222
Q ss_pred CCCCccEEEeCCcccCcccchH-HHHHHHHHHhhcCCCCceeecccc
Q 030558 75 PNPDWDLILASDILLYVKQYSN-LIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~-~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
...+||+|-+-.++++....+. ...+|+.+...|+|||.|+.++++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2359999999888877766654 455999999999999999998433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=82.16 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=64.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i 82 (175)
.+.+|||+|||+|.+++.+++.. ..+|+++|+++.++ +.++++.. .+..+ +.+.... .+++||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~---~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWI---NADALTTEFDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEE---EcchhcccccCCccEE
Confidence 46799999999999999988752 45799999999997 66665532 12222 2332221 24689999
Q ss_pred EeCCcccCcc---------cchHHHHHHHHHHhhcCCCC
Q 030558 83 LASDILLYVK---------QYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 83 ~~~~~l~~~~---------~~~~~~~~l~~l~~~l~pgG 112 (175)
+++..++-.. .......+++...+++++|+
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 9998864211 01224568888888666665
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=84.79 Aligned_cols=137 Identities=14% Similarity=0.208 Sum_probs=92.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCC-CCCCCc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFP-IPNPDW 79 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~f 79 (175)
.++.+|++|||-|.|+|.++..+++..+ .+|+..|+.++.. +.+++|....++...+....-++.. .++ ..+..+
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 4677899999999999999999998664 4799999999987 8888899998885555555555532 221 224689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhc-CCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHc
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l-~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
|.|+. +.+++..++..+.+.| +|||++++..++.+ . .....+.+++.
T Consensus 115 DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------Q----------v~~~~~~L~~~ 162 (247)
T PF08704_consen 115 DAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------Q----------VQKTVEALREH 162 (247)
T ss_dssp EEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------H----------HHHHHHHHHHT
T ss_pred cEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------H----------HHHHHHHHHHC
Confidence 99876 2334448999999999 89998887533321 0 24556677888
Q ss_pred CCe---eEEecceEEEEe
Q 030558 159 GLE---VKHLGSRVYCIK 173 (175)
Q Consensus 159 g~~---~~~~~~~~~~i~ 173 (175)
||. +.++..|.|-+.
T Consensus 163 gf~~i~~~Evl~R~~~v~ 180 (247)
T PF08704_consen 163 GFTDIETVEVLLREWEVR 180 (247)
T ss_dssp TEEEEEEEEEEEEEEEEE
T ss_pred CCeeeEEEEEEeeEEEEE
Confidence 885 444555666554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-11 Score=87.14 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCCccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030558 1 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
|.+...++++.|||+|||+|.++.+.++.++.+|++++-|. |. +++++-+..|++..++..+.....+ ++ .+++.|
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA-qyA~~Lv~~N~~~~rItVI~GKiEd-ie-LPEk~D 245 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA-QYARKLVASNNLADRITVIPGKIED-IE-LPEKVD 245 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH-HHHHHHHhcCCccceEEEccCcccc-cc-Cchhcc
Confidence 34566788999999999999999999999888999999887 64 8888888888887777666555533 22 246889
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+||+-.+=|... .+.+.+..-...+.|+|.|..+=+
T Consensus 246 viISEPMG~mL~-NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 246 VIISEPMGYMLV-NERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EEEeccchhhhh-hHHHHHHHHHHHhhcCCCCcccCc
Confidence 999976653333 455555555677999999977665
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-11 Score=83.35 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=96.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD~i 82 (175)
.+|.+|||...|-|..++..+++++.+|+.++.++..+ +.++.|....++... .+..-.++.. .+.+.+||+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~--~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEI--AIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCcccccc--ccEEecccHHHHHhcCCccccceE
Confidence 36899999999999999999898666999999999998 676767666555322 3444445432 3678899999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
+--..=+.....---.++.+|++|+|+|||+++--+... .++..+.+.++...+.++++||++
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P-----------------g~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP-----------------GKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC-----------------CcccccCChhHHHHHHHHhcCcee
Confidence 863322111111112478899999999999877632221 112222333588889999999995
Q ss_pred EEecce
Q 030558 163 KHLGSR 168 (175)
Q Consensus 163 ~~~~~~ 168 (175)
...-.+
T Consensus 273 v~~~~~ 278 (287)
T COG2521 273 VKKVRE 278 (287)
T ss_pred eeeehh
Confidence 544333
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=80.71 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=65.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
+..++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++... . .++..+..+.. ..++.+.+||.|++
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~-~~~~~~~~~--~-~~v~ii~~D~~-~~~~~~~~~d~vi~ 83 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLA-PRLREKFAA--A-DNLTVIHGDAL-KFDLPKLQPYKVVG 83 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHH-HHHHHHhcc--C-CCEEEEECchh-cCCccccCCCEEEE
Confidence 3456789999999999999999887 78999999999997 666666532 1 12233322222 22334446999998
Q ss_pred CCcccCcccchHHHHHHHHHHhh--cCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKS--YKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~--l~pgG~~~~~ 117 (175)
+-.+ +.. . ..+.++.+. +.++|.+++.
T Consensus 84 n~Py-~~~-~----~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 84 NLPY-NIS-T----PILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCCc-ccH-H----HHHHHHHhcCCCcceEEEEEE
Confidence 7654 432 2 344444432 3366666554
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=86.17 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=79.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC----CcceeeccC-----CCCCCCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP----ALPHIKHSW-----GDAFPIPNP 77 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~ 77 (175)
.+++.++|||||-|...+-.-+.+-.+++++||++-.++++-++.....+... ...++..+. .+.+++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35778999999999988887777566899999999887555444333322211 122333332 123344555
Q ss_pred CccEEEeCCcccCccc-chHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 78 DWDLILASDILLYVKQ-YSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~-~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+||+|-+-.++++... .+....++..+.++|+|||.|+-++|+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 6999998777765444 4567789999999999999888876554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-11 Score=95.64 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCC---CCcceeeccCCCCC---CCCCCCcc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGIT---PALPHIKHSWGDAF---PIPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~fD 80 (175)
++++|||||||+|..+..+++... .+|+++|++++++ +.++++....... -.-+.+.+..+|.. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 568999999999999999888644 6899999999998 6666532211110 01123333333322 22346899
Q ss_pred EEEeCCcccCcccch--HHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|++...-...+... .-.++++.+.+.|+|||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 999963321101000 0136888999999999988874
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=86.91 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i~ 83 (175)
.+++||+||||+|..+..+++.. ..+|+++|+++.++ +.+++...........+.+.+..++... ...++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45799999999999998887765 46799999999997 6666554332110111222222233221 2246899999
Q ss_pred eCCcccCcccchH--HHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~--~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...- ....... ...+++.+.+.|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 86442 1111111 347889999999999988886
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-11 Score=82.63 Aligned_cols=108 Identities=11% Similarity=-0.006 Sum_probs=71.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-CCC-CccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-PNP-DWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~fD~i~ 83 (175)
.+++++||++||+|.+++.++++++.+|+++|.++.++ +.+++|...++...++..+..+..+.+. . ... .||+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 46899999999999999999998666899999999997 7888888887764334444333322221 1 122 366666
Q ss_pred eCCcccCcccchHHHHHHHHHHh--hcCCCCceeeccc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~~~ 119 (175)
.-..+ .... ...+++.+.. .++++|.+++...
T Consensus 127 ~DPPy-~~~~---~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 127 LDPPF-FNGA---LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ECcCC-CCCc---HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 65443 3222 2355554443 6888886666433
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=86.25 Aligned_cols=108 Identities=17% Similarity=0.098 Sum_probs=68.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh---CCCCCCcceeeccCCCCC---CCCCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHSWGDAF---PIPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~f 79 (175)
...++||+||||+|.....+++.. ..+|+++|+++.++ +.++..... +...-.-+.+.+..+|.. +...++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 356899999999999988887764 36899999999998 565532111 000001233344444332 2345689
Q ss_pred cEEEeCCcccCccc--ch--HHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQ--YS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~--~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|++... .... .. .-..+++.+.+.|+|||.+++.
T Consensus 228 DVIIvDl~--DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFP--DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCC--CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99998621 1100 00 1146889999999999987774
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-11 Score=81.63 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=55.8
Q ss_pred EEEeCChHHHHHHHHHHHhhCC--CCCCcceeeccCCCCCCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCC
Q 030558 35 TTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 35 ~~~D~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+|+|+|++|+ +.++++..... ...++..+..+. ..+++.+++||+|++..++.++. +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCe
Confidence 4899999999 55543333211 111233333322 35677788999999999885554 55699999999999999
Q ss_pred ceeecccc
Q 030558 113 SQVGHLTK 120 (175)
Q Consensus 113 ~~~~~~~~ 120 (175)
.+++....
T Consensus 76 ~l~i~d~~ 83 (160)
T PLN02232 76 RVSILDFN 83 (160)
T ss_pred EEEEEECC
Confidence 99887444
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=89.51 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=70.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.+++.++.. +.+|+++|+++.++ +.+++|...++.. ++..+..+..+......++||+|++..
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av-~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAI-ACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECC
Confidence 35678999999999999999876 68899999999998 8888888887762 333333333222221224699999876
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.- . . ....+++.+. .++|++.+|+.
T Consensus 309 Pr-~-G---~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 309 PR-R-G---IGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CC-C-C---CcHHHHHHHH-hcCCCeEEEEE
Confidence 53 1 1 1125555554 36888877775
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=84.54 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=77.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f 79 (175)
.+.++|||||+++|..++.++... +.+|+++|.+++.. +.++++.+..+...++..+..+..+.++ ...++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 467899999999999999998854 34699999999987 8888899888885444443332222221 123589
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+.-. +..+-...++.+.+.|+|||.+++-
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9998752 2445668899999999999987763
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=83.77 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=73.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
++.+.++|+|||+|+|.++..+++.. +.+++..|. |.++ +.++. ..++..+..+..+.+ +. +|+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~~---P~-~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDPL---PV-ADVYL 163 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTCC---SS-ESEEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhhh---cc-cccee
Confidence 34455789999999999999988865 678999999 4455 44443 234455554444222 23 99999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCC--Cceeecccc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPK--DSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pg--G~~~~~~~~ 120 (175)
..++++.|. .++-..+|+++++.|+|| |++++...-
T Consensus 164 l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 164 LRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred eehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 999995555 678899999999999999 999997433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-10 Score=80.40 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=80.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCCCC-CCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFP-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~fD~ 81 (175)
..+.++|||||.+.|..++.||.... .+++.+|+++++. +.++++.+..+...++..+. .+..+.+. ...++||+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 34678999999999999999988653 4699999999997 89999999988866555554 23333333 45689999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
|+.-. +..+-...++.+.+.|+|||.+++
T Consensus 136 iFIDa------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDA------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeC------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 99842 234445899999999999997777
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.9e-10 Score=87.34 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|.+++.+++. +.+|+++|+++.++ +.+++|...++. .++..+..+..+.+ ...+++||+|+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-EKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-HHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 34678999999999999999886 67899999999998 888888887776 23334433332211 12345799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...- . ... ..+++.+.+ ++|++.+|++
T Consensus 368 ~dPPr-~-G~~---~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 368 LDPPR-K-GCA---AEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ECcCC-C-CCC---HHHHHHHHh-cCCCEEEEEc
Confidence 75442 1 111 255665554 7888766664
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-09 Score=72.70 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=83.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 9 RRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
..-++|||||+|..+.++++..+ ..+.++|+||.++ +...+-...|.. .+..+.-+..+.+. .++.|+++.+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~--~~~~V~tdl~~~l~--~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRV--HIDVVRTDLLSGLR--NESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCC--ccceeehhHHhhhc--cCCccEEEECC
Confidence 56699999999999999988764 4489999999997 555545555444 23444444444443 38899988875
Q ss_pred cccCcccc-------------------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcc
Q 030558 87 ILLYVKQY-------------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 147 (175)
Q Consensus 87 ~l~~~~~~-------------------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (175)
.+ -..+. +-+++++..+-..|.|.|.+|+..-. .- .
T Consensus 119 PY-Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~---------------------~N---~ 173 (209)
T KOG3191|consen 119 PY-VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR---------------------AN---K 173 (209)
T ss_pred Cc-CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh---------------------hc---C
Confidence 52 11111 11345555666777888877774111 11 1
Q ss_pred hhHHHHHHHHcCCeeEEecce
Q 030558 148 ETIFFTSCENAGLEVKHLGSR 168 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~~~ 168 (175)
+++....++.-||.+....+|
T Consensus 174 p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred HHHHHHHHhhcccceeEEEEE
Confidence 366667788888776655444
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-10 Score=82.96 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=71.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~fD~ 81 (175)
.++++||+||||.|..+..+++... .+|+.+|+++.++ +.+++..........-+.+.+..+|.. . ...++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3578999999999999999988653 5799999999987 666665433211112234444445432 2 22568999
Q ss_pred EEeCCcccCcccch--HHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++-..- ...... --..+++.+.+.|+|||.++..
T Consensus 169 Ii~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9984321 111011 1236889999999999988764
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=79.95 Aligned_cols=152 Identities=12% Similarity=0.026 Sum_probs=95.8
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-CCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-WGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fD~i~~~~~ 87 (175)
...++||||+-|.+...+..+.-.+++.+|.|..|+ +.++. .+.+++ ....+. ..+.+++.++++|+|+++-.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~-~qdp~i----~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRD-AQDPSI----ETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhc-cCCCce----EEEEEecchhcccccccchhhhhhhhh
Confidence 457999999999999999887666799999999998 44432 222222 111121 23456788999999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecc------ccCCCCC--CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL------TKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
+++.-+.+ ..+.+....|||+|.|+.+. |+.+-.. .++. +...+.....+... ..+.-+++..||
T Consensus 147 lHW~NdLP---g~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelE-R~GGiSphiSPf~q---vrDiG~LL~rAG 219 (325)
T KOG2940|consen 147 LHWTNDLP---GSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELE-REGGISPHISPFTQ---VRDIGNLLTRAG 219 (325)
T ss_pred hhhhccCc---hHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHH-hccCCCCCcChhhh---hhhhhhHHhhcC
Confidence 84444444 89999999999999877762 2211111 1110 00000000001111 266778899999
Q ss_pred CeeEEecceEEEEe
Q 030558 160 LEVKHLGSRVYCIK 173 (175)
Q Consensus 160 ~~~~~~~~~~~~i~ 173 (175)
|....+...-+.|.
T Consensus 220 F~m~tvDtDEi~v~ 233 (325)
T KOG2940|consen 220 FSMLTVDTDEIVVG 233 (325)
T ss_pred cccceecccceeec
Confidence 98877766555543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-11 Score=81.88 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=72.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i~ 83 (175)
.+|+++||+-||||.+++++.++++.+|+.+|.++..+ ..+++|.+.-+...++..+..+....++ .....||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 68999999999999999999999788899999999987 8888888876663323333333211121 1356899999
Q ss_pred eCCcccCcccchHHHHHHHHHH--hhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~--~~l~pgG~~~~~~ 118 (175)
+-... ..... ...+++.+. ..|+++|.+++-+
T Consensus 120 lDPPY-~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 120 LDPPY-AKGLY--YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp E--ST-TSCHH--HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECCCc-ccchH--HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 97664 33321 347777777 6899999777754
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=83.72 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=80.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-CcceeeccCCCCC---CCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAF---PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~fD~ 81 (175)
..+|++|||+=|-||.+|+++|..++.+||.+|.|...+ +.+++|...|+... ++..+..+.-+.+ .-...+||+
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 345999999999999999999998566999999999998 99999999999832 2233332221111 123449999
Q ss_pred EEeCCcccC------cccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLY------VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~------~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+.-..-|- +....+...++..+.++|+|||.+++.
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 998433210 111234568888999999999988886
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-10 Score=80.39 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=75.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f 79 (175)
...++||||||++|..++.+|... +.+|+.+|++++.. +.++++....+...++..+..+..+.++ ...++|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 467899999999999999999865 56899999999987 8888888887774444444322222111 124589
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+.-.- ..+-...++.+.+.|+|||.+++-
T Consensus 123 D~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDAD------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccc------ccchhhHHHHHhhhccCCeEEEEc
Confidence 99998532 334457888899999999977773
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-10 Score=78.07 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=68.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|.+|+|+.||.|.+++.+|+.. +..|+++|++|..+ +.+++|.+.|.....+..+..+..+..+ .+.||.|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEEC
Confidence 468899999999999999999833 67799999999998 9999999999886655555555433333 6799999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCce
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
..- ... ..+..+.+++++||.+
T Consensus 177 lp~----~~~---~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 177 LPE----SSL---EFLDAALSLLKEGGII 198 (200)
T ss_dssp -TS----SGG---GGHHHHHHHEEEEEEE
T ss_pred ChH----HHH---HHHHHHHHHhcCCcEE
Confidence 442 112 6777888999998854
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=82.48 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+.+|||++||+|..++.++...+ .+|+++|+++.++ +.+++|...|+... ......+....+.. .+.||+|++. .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~lD-P 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDID-P 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEEC-C
Confidence 35899999999999999988654 4799999999998 88899998887731 11121111111111 3579999984 3
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. .... .++....+.++++|.++++.
T Consensus 134 ~---Gs~~---~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F---GSPA---PFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C---CCcH---HHHHHHHHHhcCCCEEEEEe
Confidence 2 2222 77788778889999999983
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.9e-10 Score=77.26 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++..|.|+|||.+.++..+.. ...|...|.-..- . ..+.-+. ...|.++++.|+++..-+
T Consensus 72 ~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~n-------------~----~Vtacdi-a~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAPN-------------P----RVTACDI-ANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-----EEEEESS-SS-------------T----TEEES-T-TS-S--TT-EEEEEEES-
T ss_pred CCEEEEECCCchHHHHHhccc--CceEEEeeccCCC-------------C----CEEEecC-ccCcCCCCceeEEEEEhh
Confidence 457899999999999966532 4679999983311 0 0111111 456778899999888766
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
| .- .++...+.|+.|+|||||.+.|+.... ++. +.+.|.+.+++.||++..-
T Consensus 132 L-MG---Tn~~~fi~EA~RvLK~~G~L~IAEV~S--------------------Rf~--~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 132 L-MG---TNWPDFIREANRVLKPGGILKIAEVKS--------------------RFE--NVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp ---S---S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------------G-S---HHHHHHHHHCTTEEEEEE
T ss_pred h-hC---CCcHHHHHHHHheeccCcEEEEEEecc--------------------cCc--CHHHHHHHHHHCCCeEEec
Confidence 6 22 356699999999999999888852211 111 3589999999999997764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=80.17 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=59.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++....+.. ..+.+..+|.+......||.|++
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li-~~l~~~~~~~~~~---~~v~ii~~Dal~~~~~~~d~Vva 107 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMV-AELKKRFQNSPLA---SKLEVIEGDALKTEFPYFDVCVA 107 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHH-HHHHHHHHhcCCC---CcEEEEECCHhhhcccccCEEEe
Confidence 3456789999999999999999887 77899999999998 7777766654432 23344444444444457899988
Q ss_pred CCcccCcc
Q 030558 85 SDILLYVK 92 (175)
Q Consensus 85 ~~~l~~~~ 92 (175)
+-.+ ++.
T Consensus 108 NlPY-~Is 114 (294)
T PTZ00338 108 NVPY-QIS 114 (294)
T ss_pred cCCc-ccC
Confidence 7553 444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-09 Score=78.66 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=55.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
+..++++|||+|||+|.++..+++. +.+|+++|+++.++ +.++.+... . +.+.+..++........||.|++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~-~~l~~~~~~--~----~~v~ii~~D~~~~~~~~~d~Vv~ 97 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLA-EFLRDDEIA--A----GNVEIIEGDALKVDLPEFNKVVS 97 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHhcc--C----CCEEEEEeccccCCchhceEEEE
Confidence 3456789999999999999999888 77899999999998 666655432 1 22333444444433346899999
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+-.+
T Consensus 98 NlPy 101 (258)
T PRK14896 98 NLPY 101 (258)
T ss_pred cCCc
Confidence 8774
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-09 Score=75.17 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=66.5
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCccEEEe
Q 030558 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDWDLILA 84 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~fD~i~~ 84 (175)
.+||||||.|.+.+.+|+.. ...++|+|+....+. .+.+.....++ .++.+-.++... ++++++|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~-~a~~~~~~~~l----~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVA-KALRKAEKRGL----KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHH-HHHHHHHHHTT----SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHH-HHHHHHHhhcc----cceEEEEccHHHHHhhcccCCchheEEE
Confidence 69999999999999998875 667999999999884 44444444444 344433333221 34678998887
Q ss_pred CCcccCcccch-----HHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~-----~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
...=-+.-... --...++.+.++|+|||.+.+.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 53321000000 12589999999999999998873
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=71.12 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=76.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC--CccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP--DWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~fD~i~ 83 (175)
.+.|+++||+=+|+|.++++++++++..++.+|.+...+ ..+++|.+.-++......+..+....++.... .||+|+
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-KILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 468999999999999999999999888899999999987 88888888777544444444333322222222 599999
Q ss_pred eCCcccCcccchHHHHHHHH--HHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSV--LLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~--l~~~l~pgG~~~~~ 117 (175)
.-..+ ... ..+....+.. -...|+|+|.+++-
T Consensus 120 lDPPy-~~~-l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 120 LDPPY-AKG-LLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred eCCCC-ccc-hhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 97764 422 2221233333 34679999977775
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-09 Score=82.66 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
+++.|+|+|||+|.++...++.. ..+|+|++.|+.++ ..+++....++....+..+.-+..+- . .+.+.|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v-~-lpekvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREV-E-LPEKVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTS-C-HSS-EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCC-C-CCCceeEE
Confidence 36789999999999998777764 36899999999876 56655556677766665555443322 1 13389999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCc
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~ 113 (175)
++-.+= ...+.+-+...+....|.|||+|.
T Consensus 263 VSElLG-sfg~nEl~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 263 VSELLG-SFGDNELSPECLDAADRFLKPDGI 292 (448)
T ss_dssp EE---B-TTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred EEeccC-CccccccCHHHHHHHHhhcCCCCE
Confidence 985442 334455566888888899999983
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-09 Score=76.61 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=86.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC----------------C----------
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT----------------P---------- 59 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~----------------~---------- 59 (175)
..+|.++||||||+-.....-|.....+|+..|+.+.-. +.+++.+...+.- .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 446789999999996665444444466799999999764 4444333322110 0
Q ss_pred -Ccc-eeeccCCCCCCCCC-----CCccEEEeCCcccCc-ccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC
Q 030558 60 -ALP-HIKHSWGDAFPIPN-----PDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 131 (175)
Q Consensus 60 -~~~-~~~~~~~~~~~~~~-----~~fD~i~~~~~l~~~-~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~ 131 (175)
.+. .+..++....+... .+||+|++..++... .+.+....+++++.++|||||.|++...-.
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~---------- 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG---------- 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS----------
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC----------
Confidence 011 11223333333322 359999998877432 245577899999999999999998862211
Q ss_pred CCceEeeeeccCC--CcchhHHHHHHHHcCCeeEEec
Q 030558 132 WPAFLMSWRRRIG--KEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 132 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
..++....+++. ..+++...+.++++||.+++..
T Consensus 203 -~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 203 -STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred -ceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 111111111111 1256888889999999988775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-10 Score=81.30 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=92.4
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
..++||+|+|.|..+..++.. -.+|++++.|..|. ..+++. +. ..+ ..+|.+ .+-+||+|.+-++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr-~rL~kk----~y----nVl~~~ew~~----t~~k~dli~clNl 178 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMR-DRLKKK----NY----NVLTEIEWLQ----TDVKLDLILCLNL 178 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHH-HHHhhc----CC----ceeeehhhhh----cCceeehHHHHHH
Confidence 588999999999999999775 56799999999995 444322 11 111 112211 1237999999888
Q ss_pred ccCcccchHHHHHHHHHHhhcCC-CCceeecc--ccC---CCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKP-KDSQVGHL--TKN---EQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~p-gG~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+-.+. +.-++++.+..++.| +|+++++. +.. +-...+...+...++..-.+.+.. ....|.++++++||.
T Consensus 179 LDRc~---~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee-~v~~~~e~lr~~g~~ 254 (288)
T KOG3987|consen 179 LDRCF---DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEE-EVARFMELLRNCGYR 254 (288)
T ss_pred HHhhc---ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHH-HHHHHHHHHHhcCch
Confidence 84343 444999999999999 89888872 111 111122222222233222233322 237889999999999
Q ss_pred eEEecceEEE
Q 030558 162 VKHLGSRVYC 171 (175)
Q Consensus 162 ~~~~~~~~~~ 171 (175)
++..+...|+
T Consensus 255 veawTrlPYL 264 (288)
T KOG3987|consen 255 VEAWTRLPYL 264 (288)
T ss_pred hhhhhcCCee
Confidence 9887666554
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=70.25 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=58.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++|++++|||||+|.++...+-.....|.|+|++|.++ +.+.+|...-.. ++..++-+..+ +.+..+.||.++.+
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEv--qidlLqcdild-le~~~g~fDtaviN 121 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEV--QIDLLQCDILD-LELKGGIFDTAVIN 121 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhh--hhheeeeeccc-hhccCCeEeeEEec
Confidence 468999999999999999766554356699999999998 888888877544 33443333322 23345789999998
Q ss_pred Ccc
Q 030558 86 DIL 88 (175)
Q Consensus 86 ~~l 88 (175)
..+
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 776
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.3e-09 Score=75.34 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=75.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC------CCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 78 (175)
.+.++|||||+++|..++.++... +.+|+.+|+++... +.++.+....+...++..+..+..+.++- ..++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 356899999999999999998754 45799999999886 78888888888755444443332222221 1368
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
||+|+.-.- ...-...++.+.+.|+|||.+++
T Consensus 157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 999988422 33445788888999999997766
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-09 Score=84.89 Aligned_cols=102 Identities=17% Similarity=0.318 Sum_probs=68.2
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH-HHHHHHHHhhCCCCCCcceeeccC-CCCCCCCCCCccEEEeCCc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI-EDNIAYNSTTNGITPALPHIKHSW-GDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~ 87 (175)
..+||+|||+|+++.+|..+ +|+.+-+.+..- +...+...+. ++ +.+.... ...+|+++++||+|.++.+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleR-Gv----pa~~~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALER-GV----PAMIGVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhc-Cc----chhhhhhccccccCCccchhhhhcccc
Confidence 45899999999999999775 344444433211 1122222222 22 2222222 3568999999999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+-.|..... .+|-++-|+|+|||.++.+.+..
T Consensus 191 ~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 191 LIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cccchhccc--ceeehhhhhhccCceEEecCCcc
Confidence 866665544 68889999999999988874443
|
; GO: 0008168 methyltransferase activity |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-08 Score=71.67 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=97.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~i 82 (175)
..-+||||.||+|..-+.+..... .+|...|+|+..+ +..+..++..++...+.+...+..+. +.......+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 457899999999999988766543 4699999999887 78888888888854444444443322 22224467999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC-CCC--C-CCCCCCC--CceEeeeeccCCCcchhHHHHHHH
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN-EQG--E-GTEGLPW--PAFLMSWRRRIGKEDETIFFTSCE 156 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~-~~~--~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 156 (175)
+.+..+-..++.......++-+.+++.|||.++.+..+- +.. + ..+.... ..|.+ ++. +..++-++.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM---RrR---sq~EmD~Lv~ 287 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM---RRR---SQAEMDQLVE 287 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEE---Eec---CHHHHHHHHH
Confidence 999887555655556678999999999999888872111 111 1 1111100 11222 122 2477888899
Q ss_pred HcCCe
Q 030558 157 NAGLE 161 (175)
Q Consensus 157 ~~g~~ 161 (175)
++||+
T Consensus 288 ~aGF~ 292 (311)
T PF12147_consen 288 AAGFE 292 (311)
T ss_pred HcCCc
Confidence 99997
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-09 Score=80.23 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=64.0
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C--------------
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-------------- 74 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------- 74 (175)
.++||++||+|.+++.+++. ..+|+++|+++.++ +.+++|...++.. ++..+..+..+.++ .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai-~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSV-AAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccc
Confidence 57999999999999998876 66899999999998 8888888887762 33333333322111 0
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+||+|+.-.. + ....+ .+++.+.+ |++.+|++
T Consensus 285 ~~~~~D~v~lDPP-R-~G~~~---~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 285 KSYNFSTIFVDPP-R-AGLDD---ETLKLVQA---YERILYIS 319 (362)
T ss_pred cCCCCCEEEECCC-C-CCCcH---HHHHHHHc---cCCEEEEE
Confidence 0125899998544 2 11122 55555543 66666664
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=75.69 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=51.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||+|||+|.++..+++. +.+|+|+|+++.++ +.++++... .++..+..+..+ .++.+-.++.|++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D~~~-~~~~~~~~~~vv~ 111 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLA-PILAETFAE----DNLTIIEGDALK-VDLSELQPLKVVA 111 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHH-HHHHHhhcc----CceEEEEChhhc-CCHHHcCcceEEE
Confidence 3456789999999999999999988 55999999999998 666554422 122333333221 1221112588888
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+-.+
T Consensus 112 NlPY 115 (272)
T PRK00274 112 NLPY 115 (272)
T ss_pred eCCc
Confidence 7653
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=74.22 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=50.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc---E
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD---L 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD---~ 81 (175)
...++.+|||+|||+|.++..+++. +..|+++|+++.++ +.++.+... . ..+.+..+|........|| +
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~-~~l~~~~~~--~----~~v~v~~~D~~~~~~~~~d~~~~ 97 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLA-EILRKLLSL--Y----ERLEVIEGDALKVDLPDFPKQLK 97 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHH-HHHHHHhCc--C----CcEEEEECchhcCChhHcCCcce
Confidence 3446789999999999999999887 56799999999998 666554422 1 2233333343333223566 7
Q ss_pred EEeCCc
Q 030558 82 ILASDI 87 (175)
Q Consensus 82 i~~~~~ 87 (175)
|+++-.
T Consensus 98 vvsNlP 103 (253)
T TIGR00755 98 VVSNLP 103 (253)
T ss_pred EEEcCC
Confidence 777655
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-09 Score=78.58 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCC--CCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP--IPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~fD~i~ 83 (175)
.+|++|||+=|-||.+++.++..++.+|+.+|.|..++ +.+++|...|+.. ..+..+..+.-+.+. -..++||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999998887566899999999998 9999999999874 334444433322111 1245899999
Q ss_pred eCCcccCcc---cchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVK---QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~---~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-..-|--. -..+...++..+.++++|||.+++.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 843322111 1224567888999999999977654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=75.48 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=69.4
Q ss_pred CcEEEeCCCccHHHHH----HHHhC-----CCcEEEEeCChHHHHHHHHHHHhh-----------------------CC-
Q 030558 10 RRCIELGSGTGALAIF----LRKAM-----NLDITTSDYNDQEIEDNIAYNSTT-----------------------NG- 56 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~----l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~-----------------------~~- 56 (175)
-+|.-.||.||.=... +.... ..+|+|+|+|+.+|+ .++...-. .+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~-~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLE-KARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHH-HHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999975533 33321 246999999999984 43322100 00
Q ss_pred --CCC-CcceeeccCCCCCC--C-CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 57 --ITP-ALPHIKHSWGDAFP--I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 57 --~~~-~~~~~~~~~~~~~~--~-~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
..+ .-..+.+...+... + ..+.||+|+|.+++.|. +.+...++++++++.|+|||.+++...+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 000 00112222222222 2 24689999999998554 45678899999999999999888864443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-08 Score=64.41 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCccH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.++||+|||+|. ++..|++. |.+|+++|+++..+ +.++.+ +. ..+.-++.+.....-..+|+|.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV-~~a~~~----~~----~~v~dDlf~p~~~~y~~a~liysi- 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAV-EKAKKL----GL----NAFVDDLFNPNLEIYKNAKLIYSI- 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHh----CC----eEEECcCCCCCHHHHhcCCEEEEe-
Confidence 56889999999996 88888765 89999999999887 554433 12 233333322211112357888775
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...++++..+-++.+.+. .-+++.
T Consensus 85 -----rpp~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 85 -----RPPRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred -----CCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 335667777778887554 445554
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.4e-08 Score=72.74 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=77.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+|.+|+|.=||.|-+++.+|+.....|+++|+||.++ +++++|+..|.....+..+..+..+..+ ..+.+|-|++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~-~~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAP-ELGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhh-ccccCCEEEeCC
Confidence 35899999999999999999998555599999999998 9999999999996665555555433332 227899999975
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.- +.. ..+..+.+.+++||.+-+
T Consensus 265 p~----~a~---~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 265 PK----SAH---EFLPLALELLKDGGIIHY 287 (341)
T ss_pred CC----cch---hhHHHHHHHhhcCcEEEE
Confidence 53 222 677788888889884444
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-08 Score=71.57 Aligned_cols=100 Identities=28% Similarity=0.499 Sum_probs=71.0
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH-----HhhCCCCCCcceeeccCCCCCC--CCCCC-cc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-----STTNGITPALPHIKHSWGDAFP--IPNPD-WD 80 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~-fD 80 (175)
..+|||+|+|+|..++.++...+.+|+.+|...-. ++++.+ ...+.....+....+.|+.... +.... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~--~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV--ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhH--HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45699999999999999999889999999997744 333333 2222333345556678876553 22233 99
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCc
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~ 113 (175)
+|++++++|.....+.+..++..++ -.++.
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll---~~~~~ 194 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLL---AKDGT 194 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHH---hcCCe
Confidence 9999999999988887777776666 45553
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=78.39 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=79.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+++|+|||.|....+++....++++++|.++..+......... ..+... ..+...|.-..++++++||.+.+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k-~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNK-CNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhh-cceehhhhhcCCCCccccCcEEEE
Confidence 345668999999999999999887789999999999775332222211 122111 223444545667899999999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.+|.++.. .+++|++|+++|||.++..
T Consensus 186 d~~~~~~~~~---~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 EVVCHAPDLE---KVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred eecccCCcHH---HHHHHHhcccCCCceEEeH
Confidence 9996666544 9999999999999977766
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5e-08 Score=73.60 Aligned_cols=111 Identities=17% Similarity=0.107 Sum_probs=79.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+|..|||==||||.+.+.+.- .|.+++|+|++..|+ +-++.|....+. ........-....+|+.++++|.|.+-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv-~gak~Nl~~y~i-~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMV-RGAKINLEYYGI-EDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHH-hhhhhhhhhhCc-CceeEEEecccccCCCCCCccceEEec
Confidence 45688999999999999999855 499999999999998 778888887664 222223332234566777789999874
Q ss_pred Cccc-----Cccc-chHHHHHHHHHHhhcCCCCceeeccc
Q 030558 86 DILL-----YVKQ-YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~-----~~~~-~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
...- .... ..-..++++.+.++|++||++++..+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3321 1111 12356889999999999998888643
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=77.29 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=72.4
Q ss_pred CcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 10 RRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
-+|||+.||+|..++.++++. ..+|+++|+|+..+ +.+++|...++.. .+..+..+....+......||+|..- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlD-P 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDID-P 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeC-C
Confidence 479999999999999999873 46799999999998 8899999887662 12222222111112123579999884 4
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+ .. .. ..+..+.+.++++|.++++.
T Consensus 123 f-Gs--~~---~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F-GT--PA---PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-CC--cH---HHHHHHHHhcccCCEEEEEe
Confidence 3 22 22 78889999999999999984
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=69.41 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=61.3
Q ss_pred CCCcEEEeCCCccHHHH----HHHHhC------CCcEEEEeCChHHHHHHHHHHHhh-------------------CC-C
Q 030558 8 ERRRCIELGSGTGALAI----FLRKAM------NLDITTSDYNDQEIEDNIAYNSTT-------------------NG-I 57 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~----~l~~~~------~~~v~~~D~s~~~l~~~~~~~~~~-------------------~~-~ 57 (175)
..-+|.-.||++|.=.. .+.... ..+|+|+|+|+.+++ .+++..-. .+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~-~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALE-KARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHH-HHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHH-HHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 34679999999997553 333311 247999999999984 43311100 00 0
Q ss_pred C-------CCcceeeccCCCCCCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 58 T-------PALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 58 ~-------~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
. ..+.+..++..+ .+...+.||+|+|.+++-+. +.+...++++.+++.|+|||.+++...+.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred eeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 0 011122222222 12345689999999998544 46778899999999999999988874443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=72.47 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.+..|.|+|||-+.++. .....|+.+|.-+.- . ..+.-+. ...|.++++.|+++..-+
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~~-------------~----~V~~cDm-~~vPl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVAVN-------------E----RVIACDM-RNVPLEDESVDVAVFCLS 237 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeecCC-------------C----ceeeccc-cCCcCccCcccEEEeeHh
Confidence 45779999999998764 225568998883311 0 1111222 236788899999887655
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
| . -.++...+.|+.|+|++||.++|+.... ++. +...|.+.+...||++.+.
T Consensus 238 L-M---gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------------Rf~--dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 238 L-M---GTNLADFIKEANRILKPGGLLYIAEVKS--------------------RFS--DVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred h-h---cccHHHHHHHHHHHhccCceEEEEehhh--------------------hcc--cHHHHHHHHHHcCCeeeeh
Confidence 5 2 3366799999999999999888852211 111 2477999999999998776
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-08 Score=76.71 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-------C---C---
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-------I---P--- 75 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~--- 75 (175)
+.+|||++||+|.+++.+++. ..+|+++|+++.++ +.+++|...++.. ++..+..+..+.++ + .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av-~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSV-NAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccc
Confidence 357999999999999999876 56899999999998 8888898888762 33444333322111 0 0
Q ss_pred --CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 --NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 --~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...||+|+.-.. ... -...+++.+.+ |++.+|++
T Consensus 275 ~~~~~~d~v~lDPP--R~G---~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 275 LKSYNCSTIFVDPP--RAG---LDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred cccCCCCEEEECCC--CCC---CcHHHHHHHHc---CCcEEEEE
Confidence 113799888433 111 12255555543 67766665
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=70.51 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=69.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcc-eeeccCCCCCCCCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALP-HIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fD~i 82 (175)
.+...+|||+|||+|.-...+.... -.+++++|.|+.|+ +..+.-... ....... .......+..++ ...|+|
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLRA-GPNNRNAEWRRVLYRDFLPF--PPDDLV 106 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHhc-ccccccchhhhhhhcccccC--CCCcEE
Confidence 3567899999999998776665543 34699999999997 544433322 2211100 000001111222 234999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCC
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+++++|....+ .....+++.+.+.+++ .++++.++..
T Consensus 107 i~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 107 IASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred EEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 99999977776 7788888888887765 6777644443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=75.55 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=75.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCcc
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD 80 (175)
..+|.+|||++||+|.=+..++...+ ..|++.|+++.-+ +.++.|++..+. .++.....+.. ....+.||
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~----~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGV----SNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCC----CeEEEEeCchhhhhhhchhhcC
Confidence 35789999999999999999988763 4699999999887 777888887666 22222222221 23345799
Q ss_pred EEEe----C--CcccCccc-------------chHHHHHHHHHHhhcCCCCceeecc
Q 030558 81 LILA----S--DILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~----~--~~l~~~~~-------------~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.|+. + .++...++ ..-+.++|..+.+.|||||+++.++
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 9995 2 11211110 0123688899999999999998884
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-08 Score=67.73 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=65.4
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030558 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
+++|+|+|.|-.++.+|-.. ..+++.+|.+..-+ ..++.....-++ .++..+.....+ .....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L-~nv~v~~~R~E~--~~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGL-SNVEVINGRAEE--PEYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT--SSEEEEES-HHH--TTTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCC-CCEEEEEeeecc--cccCCCccEEEeehhc-
Confidence 79999999999999987765 56799999999875 455544444445 122333222222 3456799999998774
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceee
Q 030558 90 YVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.+..+++-..+.+++||.+++
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCCEEEE
Confidence 233788888889999997666
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=69.13 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCcEEEeCCCccHHH----HHHHHhC------CCcEEEEeCChHHHHHHHHHHHhh-----CCCCC--------------
Q 030558 9 RRRCIELGSGTGALA----IFLRKAM------NLDITTSDYNDQEIEDNIAYNSTT-----NGITP-------------- 59 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~----~~l~~~~------~~~v~~~D~s~~~l~~~~~~~~~~-----~~~~~-------------- 59 (175)
.-+|.-.||+||.=. +.+.+.. ..+|+|+|+|..+|+ .++...-. .++..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~-~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE-KARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH-HHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 567999999999644 4444443 246999999999984 33311111 11100
Q ss_pred ------CcceeeccCCCCCC--CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 60 ------ALPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 60 ------~~~~~~~~~~~~~~--~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.-..+.+...+.+. +..+.||+|+|.+++-+. +.+...++++.++..|+|||.+++-..+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 00011222222221 145679999999998444 46778899999999999999998864443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=70.69 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=91.9
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
...+|+|+|.|+.+..+.+. ..+|-+++++..-+ ...+...+ .+ +..+. ++.+.. -..-|+|++-++++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v-~~~a~~~~-~g----V~~v~---gdmfq~-~P~~daI~mkWiLh 247 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFV-LAAAPYLA-PG----VEHVA---GDMFQD-TPKGDAIWMKWILH 247 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHH-Hhhhhhhc-CC----cceec---cccccc-CCCcCeEEEEeecc
Confidence 67999999999999988884 77799999988776 33333332 22 22332 233322 22346999999997
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceeeccccCCC--CCCCC----CCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 90 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ--GEGTE----GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+|. .++..++|++.+..|+|+|.+++...-... ..... ......+.......-...+.++|...+.++||.+.
T Consensus 248 dwt-DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 248 DWT-DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred cCC-hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 777 578999999999999999999888432221 11111 00000111111111112245899999999999876
Q ss_pred Ee
Q 030558 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
.+
T Consensus 327 ~~ 328 (342)
T KOG3178|consen 327 MV 328 (342)
T ss_pred EE
Confidence 65
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=71.65 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=68.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
..++||.||+|.|..+..+.+.. ..+|+++|+++.++ +.+++....+...-.-+.+.+..+|.. ...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 46789999999999999887854 45799999999998 677666543221011133333333322 23356899999
Q ss_pred eCCcccCcc--cch-H--HHHHHH-HHHhhcCCCCceeec
Q 030558 84 ASDILLYVK--QYS-N--LIKSLS-VLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~--~~~-~--~~~~l~-~l~~~l~pgG~~~~~ 117 (175)
+-. . ... ..+ . -..+++ .+.+.|+|||.+++.
T Consensus 182 ~D~-~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-A-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-C-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 742 1 100 000 0 125677 788999999987765
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=67.20 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=69.1
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CC--CCCCCccEEE
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FP--IPNPDWDLIL 83 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~fD~i~ 83 (175)
..+||||||.|.+...+|+.. ...++|+|+....+ ..+...+...++ +++.+...+. ++ +++++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l----~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGL----KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCC----CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 469999999999999999874 56799999999887 444444444444 2333333332 22 2345899888
Q ss_pred eCCcccCcc--c---chHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVK--Q---YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~--~---~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.+..=-+.- + ---....++.+.+.|+|||.+.+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 753210000 0 0012488999999999999999983
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=64.53 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=71.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHhhCCCCCC------cceeeccCCCCCC--C
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPA------LPHIKHSWGDAFP--I 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~ 74 (175)
+.+|.+.||+|+|+|.++..++...+ ..++|+|.-++.+ +..++|+.....+.. .....+..++... .
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 66899999999999999988886553 3458999999887 777777766543211 1122222344332 2
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+||.|.+...- . ++-+++...|+|||++++-
T Consensus 159 e~a~YDaIhvGAaa---~------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAA---S------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCcceEEEccCc---c------ccHHHHHHhhccCCeEEEe
Confidence 34589999987543 2 4557788889999999886
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-08 Score=67.01 Aligned_cols=76 Identities=12% Similarity=0.202 Sum_probs=52.3
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-CccEEEeCCc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD~i~~~~~ 87 (175)
..|+|+.||.|..++.+|+. ..+|+++|+++..+ +.++.|.+..+...++..+..++.+..+ ...+ .||+|+++..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 36999999999999999997 77899999999998 8999999998876666777666644332 2222 2899998643
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-06 Score=61.79 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=87.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh----CCCC---------------CCcceee---
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT----NGIT---------------PALPHIK--- 65 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~----~~~~---------------~~~~~~~--- 65 (175)
.+.+||=-|||.|+++..+|+. |..+.|.|.|--|+. ........ +... .+...+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll-~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLL-ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHH-HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4578999999999999999998 999999999999963 22211110 0000 0011111
Q ss_pred --------------ccCCCCCC--CC---CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC
Q 030558 66 --------------HSWGDAFP--IP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG 126 (175)
Q Consensus 66 --------------~~~~~~~~--~~---~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~ 126 (175)
+..+|... .. .++||+|+... +...-+++...++.+.++||||| +.|-..+..-...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGG-YWINFGPLLYHFE 209 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCC-EEEecCCccccCC
Confidence 11111111 11 36899999873 33666789999999999999999 3343222211111
Q ss_pred CC--CCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEecc
Q 030558 127 TE--GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
.. ..+.+ -..+.+++.+++++.||+++....
T Consensus 210 ~~~~~~~~s----------veLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 PMSIPNEMS----------VELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCcc----------cCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11 00000 122458999999999999876443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-07 Score=66.39 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
..++||=||.|.|...+++.+.. .+|+.+|+++.++ +.+++........-.-+.+.+.. .......++||+||.-..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICLQE 148 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEcCC
Confidence 46899999999999999998974 5999999999998 55554222211111112222111 111112368999997533
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .+ ...+.+.+.|+|||.++..
T Consensus 149 ~-----~~---~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 149 P-----DI---HKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred C-----Ch---HHHHHHHHhcCCCcEEEEC
Confidence 2 22 6778899999999988776
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-07 Score=71.06 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=69.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---C--CCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I--PNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~fD~ 81 (175)
.++.++||+=||.|.+++.+|+. ..+|+|+|+++.++ +.+++|.+.|+.. ++.+..++... - ....+|+
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~A~~NA~~n~i~----N~~f~~~~ae~~~~~~~~~~~~d~ 365 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EAAQENAAANGID----NVEFIAGDAEEFTPAWWEGYKPDV 365 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HHHHHHHHHcCCC----cEEEEeCCHHHHhhhccccCCCCE
Confidence 35678999999999999999976 88999999999998 9999999999883 34444433222 1 2347899
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+.-.. ...--..+++.+.+ ++|...+|++
T Consensus 366 VvvDPP-----R~G~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 366 VVVDPP-----RAGADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred EEECCC-----CCCCCHHHHHHHHh-cCCCcEEEEe
Confidence 988432 11111255555554 5666666665
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=58.97 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=76.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 78 (175)
+..+|.-|||+|-|||.++..+.+++ ...++++++|++-. ..+.+.-.. . ..+..+..+ .+ +..+..
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~~p~--~----~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQLYPG--V----NIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHhCCC--c----cccccchhhHHHHHhhcCCCe
Confidence 44567899999999999999988876 34599999999775 443322111 1 122222111 11 234558
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCC
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 123 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~ 123 (175)
||.|+|.-.+-..+ ...-.++++++...+.+||.++-..|....
T Consensus 118 ~D~viS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 118 FDSVISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred eeeEEeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 99999987763444 456679999999999999988888777433
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.9e-07 Score=64.06 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC-CC-ccEEEeC
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PD-WDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-fD~i~~~ 85 (175)
+++++|||+|.|-.++.+|-.. ..+|+.+|....-+ .-++.....-++ ++++...+....+.. .. ||+|++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L----~nv~i~~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGL----ENVEIVHGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCC----CCeEEehhhHhhcccccccCcEEEee
Confidence 6899999999999999987433 66799999999775 455544444444 334444333222222 13 9999997
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.+- .+..+.+-....+++||.+++
T Consensus 143 Ava-------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 143 AVA-------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred hcc-------chHHHHHHHHHhcccCCcchh
Confidence 664 344777778888999886544
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.5e-07 Score=61.97 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=64.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCc---------EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM-NLD---------ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~---------v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (175)
.+.++..+||--||+|.+.++.+... ... ++|+|+++.++ +.++.|....+....+.....+. ..+++
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~~~ag~~~~i~~~~~D~-~~l~~ 102 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENLKAAGVEDYIDFIQWDA-RELPL 102 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHHHHTT-CGGEEEEE--G-GGGGG
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHHHhcccCCceEEEecch-hhccc
Confidence 34567899999999999999876653 333 78999999998 78888888877643333332222 22334
Q ss_pred CCCCccEEEeCCcccCccc-chH----HHHHHHHHHhhcCC
Q 030558 75 PNPDWDLILASDILLYVKQ-YSN----LIKSLSVLLKSYKP 110 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~-~~~----~~~~l~~l~~~l~p 110 (175)
.++++|+|+++..+-.-.. ..+ ...+++++.+++++
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 5679999999876521111 111 24567788888888
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.7e-07 Score=64.79 Aligned_cols=143 Identities=15% Similarity=0.053 Sum_probs=86.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~fD~ 81 (175)
..+|+.+||+|+-||.++..+.++++.+|+|+|..-.++...++.. . ..+.+...+.. + ...+..|+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d-----~----rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND-----P----RVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC-----C----cEEEEecCChhhCCHHHcccCCCe
Confidence 3578999999999999999999998889999999887762222211 1 11122221111 1 11225688
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+++--++ - .+..++..+..+++|++.++..+-++.+...+.........-. .........+.+.+.+.||.
T Consensus 148 ~v~DvSF---I---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~---~~~~~v~~~i~~~~~~~g~~ 218 (245)
T COG1189 148 IVIDVSF---I---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDP---KLHAEVLSKIENFAKELGFQ 218 (245)
T ss_pred EEEEeeh---h---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCc---chHHHHHHHHHHHHhhcCcE
Confidence 8886554 2 4558999999999999877776444432221111111111110 00011236778888888998
Q ss_pred eEEec
Q 030558 162 VKHLG 166 (175)
Q Consensus 162 ~~~~~ 166 (175)
+..+.
T Consensus 219 ~~gl~ 223 (245)
T COG1189 219 VKGLI 223 (245)
T ss_pred EeeeE
Confidence 87763
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-06 Score=57.00 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=63.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHH-----hCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCCcceeeccCCCCCCCCCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRK-----AMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~-----~~~~~v~~~D~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f 79 (175)
.+..+|+|+|||.|.++..++. ..+.+|+++|.++..+ +.+.+..+... .............+. ......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADE--SSSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhh--cccCCC
Confidence 4567899999999999999988 5578899999999887 44443333333 111122221111111 124567
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+++++-++. .+..+ .+|+.+.+ |+-.+++..+..
T Consensus 101 ~~~vgLHaC---G~Ls~--~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 101 DILVGLHAC---GDLSD--RALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred eEEEEeecc---cchHH--HHHHHHHH---cCCCEEEEcCCc
Confidence 888887776 44333 66666665 555555554443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.2e-07 Score=64.70 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=59.4
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.+..++..|||+|-|||.++..+... +.+|+|+++++.|+ ..+++..+.... ....+.-.++.+......||.++
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmv-ael~krv~gtp~---~~kLqV~~gD~lK~d~P~fd~cV 128 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMV-AELEKRVQGTPK---SGKLQVLHGDFLKTDLPRFDGCV 128 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHH-HHHHHHhcCCCc---cceeeEEecccccCCCcccceee
Confidence 45667899999999999999999776 99999999999998 666655554332 23344445666666667899999
Q ss_pred eCCc
Q 030558 84 ASDI 87 (175)
Q Consensus 84 ~~~~ 87 (175)
++-.
T Consensus 129 sNlP 132 (315)
T KOG0820|consen 129 SNLP 132 (315)
T ss_pred ccCC
Confidence 8644
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-06 Score=61.14 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=74.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 78 (175)
...++++||||.=||.-++.+|... +.+|+++|+++... +...+.....+....++.+...-.+.+ ..+.++
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 4568999999998988888777765 67899999999887 555555565566444555443332222 134679
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||.++.- .+..+=.....++.+++++||.+++-
T Consensus 150 fDfaFvD------adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 150 FDFAFVD------ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eeEEEEc------cchHHHHHHHHHHHhhcccccEEEEe
Confidence 9999873 22333348889999999999988774
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-07 Score=62.81 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
.+.+.|+|+|+|.++..+|+. +.+|++++.+|.-. ..+.+|+..++. .++....++.....=..-|+|+|-..=
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~----~n~evv~gDA~~y~fe~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGD----VNWEVVVGDARDYDFENADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCC----cceEEEecccccccccccceeHHHHhh
Confidence 467999999999999999887 88899999999775 778888776666 455555566554333567888873211
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-..-.+.+..+++.+..-|+.++.++=.
T Consensus 107 -TaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 107 -TALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred -HHhhcccccHHHHHHHHHhhcCCccccH
Confidence 1122456678888888888988866544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=70.93 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=68.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----CCCCCCCccEEE
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----FPIPNPDWDLIL 83 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~fD~i~ 83 (175)
+..+||||||.|.+...+|+.. ...++|+|+....+...++ .....++ .++.+-..+. ..++++++|.|+
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l----~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNI----TNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCC----CeEEEEcCCHHHHHHhcCcccccEEE
Confidence 5679999999999999998874 5679999999987744443 4444444 2222222211 125677899888
Q ss_pred eCCcccCccc-----chHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~-----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+..=-+.-. ----...++.+.+.|+|||.+.+.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 7533211000 001248899999999999988886
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=63.82 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=56.5
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC---CccE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP---DWDL 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~fD~ 81 (175)
+..++..|||||+|.|.++..+++. +..|+++++++.++ +.+++.... ..++.+..+|.+...-. .++.
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~-~~L~~~~~~------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLA-EVLKERFAP------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHH-HHHHHhccc------ccceEEEeCchhcCcchhhcCCCE
Confidence 4455789999999999999999887 78899999999887 666655431 13345555665554333 6788
Q ss_pred EEeCCcccCcc
Q 030558 82 ILASDILLYVK 92 (175)
Q Consensus 82 i~~~~~l~~~~ 92 (175)
|+++-.. +..
T Consensus 99 vVaNlPY-~Is 108 (259)
T COG0030 99 VVANLPY-NIS 108 (259)
T ss_pred EEEcCCC-ccc
Confidence 8887553 443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=65.00 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHh-hCCCCCCcceeeccCCCC---CCC--CC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWGDA---FPI--PN 76 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~--~~ 76 (175)
++..++|+|||+|.=+..+.+.. ...++++|+|..+|+ .+..++. ..-....+..+..+..+. ++. ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~-~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQ-RTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHH-HHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 46689999999999876655543 356999999999984 4444444 211111111122211121 111 12
Q ss_pred CCccEEEe-CCcccCcccchHHHHHHHHHHh-hcCCCCceeec
Q 030558 77 PDWDLILA-SDILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~-~~~l~~~~~~~~~~~~l~~l~~-~l~pgG~~~~~ 117 (175)
....+++. ..++.+. ..++...+|+++.+ .|+||+.+++.
T Consensus 155 ~~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 23556555 4466444 46678899999999 99999998887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-07 Score=64.32 Aligned_cols=121 Identities=20% Similarity=0.131 Sum_probs=80.8
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l 88 (175)
-++|||||=+......- ..-..|+.+|.++..- ... +.++.. -.+| ...+.||+|.++-++
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~~~-~I~-----------qqDFm~----rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQHP-GIL-----------QQDFME----RPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCCCC-Cce-----------eecccc----CCCCCCcccceeEEEEEEEE
Confidence 68999999755443332 2234599999987331 110 111111 1122 235689999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCc-----eeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDS-----QVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
.+.++..+.-++++.+.+.|+|+|. ++++++.. .. .- .++- +.+.|..+|+..||...
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------Cv--~N-SRy~--~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------CV--TN-SRYM--TEERLREIMESLGFTRV 177 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------Hh--hc-cccc--CHHHHHHHHHhCCcEEE
Confidence 9999999999999999999999998 77764432 10 00 1111 25889999999999865
Q ss_pred Ee
Q 030558 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
..
T Consensus 178 ~~ 179 (219)
T PF11968_consen 178 KY 179 (219)
T ss_pred EE
Confidence 54
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=64.42 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCC-CC---CCCCCCccEE
Q 030558 9 RRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGD-AF---PIPNPDWDLI 82 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~---~~~~~~fD~i 82 (175)
.-++||||+|. ....+-.++..+.+++|+|+++..+ ++++.++..| ++...+..+...... .+ ....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl-~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSL-ESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHH-HHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999997 4656666666699999999999998 9999999999 887766665443321 12 2234589999
Q ss_pred EeCCcccCcc
Q 030558 83 LASDILLYVK 92 (175)
Q Consensus 83 ~~~~~l~~~~ 92 (175)
+|+..+|...
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999985443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.3e-06 Score=55.44 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=63.6
Q ss_pred EEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCCCCC-CCccEEEeCCc
Q 030558 12 CIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPN-PDWDLILASDI 87 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~fD~i~~~~~ 87 (175)
++|+|||+|... .++.... ..++++|+++.++. ........... ..+.....+... ..++.. ..||++ ....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLA-LARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHH-HHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999977 4434322 37899999999874 32222211111 002233333333 255555 489999 5444
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..+... ....+.++.+.++|+|.+++....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 433333 559999999999999988887433
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=62.70 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=56.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHH------HHHHHHHhhCCCCCCcceeeccCCCCCCCC--
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIE------DNIAYNSTTNGITPALPHIKHSWGDAFPIP-- 75 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 75 (175)
.+.+++..+|||||.|.....+|...+++ .+|+++.+.... +..++.....+. ....+.+..++.+...
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~--~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK--RPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----EEEEECS-TTTHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc--ccccceeeccCccccHhH
Confidence 34568899999999999998877766666 999999996532 111122222222 2234444444433211
Q ss_pred ---CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 ---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ---~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-..-|+|++++.+ +. +++...+.++...||+|.+++.+
T Consensus 117 ~~~~s~AdvVf~Nn~~-F~---~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTC-FD---PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHGHC-SEEEE--TT-T----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hhhhcCCCEEEEeccc-cC---HHHHHHHHHHHhcCCCCCEEEEC
Confidence 1245899999887 22 23446668888889998766544
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.2e-06 Score=58.42 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=77.7
Q ss_pred EEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-CccEEEeCCcc
Q 030558 12 CIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWDLILASDIL 88 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD~i~~~~~l 88 (175)
|.||||-.|.+..+|.+..- ..++++|+++.-+ +.++.+....++..+ +....++.+. +..+ ..|.|+.+.+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~---i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDR---IEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTT---EEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCccc---EEEEECCcccccCCCCCCCEEEEecCC
Confidence 68999999999999999753 3599999999998 888888888887543 3334444443 3333 37888887663
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE----
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH---- 164 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---- 164 (175)
-..+..++++....+++...|++. +. .....+.+++.+.||.+.+
T Consensus 77 -----G~lI~~ILe~~~~~~~~~~~lILq-----------------------P~---~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 -----GELIIEILEAGPEKLSSAKRLILQ-----------------------PN---THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -----HHHHHHHHHHTGGGGTT--EEEEE-----------------------ES---S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred -----HHHHHHHHHhhHHHhccCCeEEEe-----------------------CC---CChHHHHHHHHHCCCEEEEeEEE
Confidence 223446666665555544344442 01 1247888999999997443
Q ss_pred -ecceEEEE
Q 030558 165 -LGSRVYCI 172 (175)
Q Consensus 165 -~~~~~~~i 172 (175)
-..+.|.|
T Consensus 126 ~e~~~~YeI 134 (205)
T PF04816_consen 126 EENGRFYEI 134 (205)
T ss_dssp EETTEEEEE
T ss_pred eECCEEEEE
Confidence 25666655
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-06 Score=59.60 Aligned_cols=105 Identities=15% Similarity=0.250 Sum_probs=77.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
.+|++||++|=|-|.....+....-.+-+.++..|..+ +..+..... -..++-.....|.+.++ .+++.||-|+--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhcccc--cccceEEEecchHhhhccccccCcceeEee
Confidence 57899999999999999888666556678899999887 554433322 11233344556777665 677889998864
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. +.+..+++..+.+.+.|+|||+|++-+.
T Consensus 177 T---y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 177 T---YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred c---hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 2 3355678889999999999999977665
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=68.83 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCC---CC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAF---PI 74 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ 74 (175)
.+.+|||.+||+|.+...++... ..+++|+|+++..+ +.++.+....+. ........+. .+.. ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLLGEFAL-LEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHHhhcCC-CCceeeeccccccccccccc
Confidence 45689999999999998877644 14689999999887 666666554331 0111111110 0111 11
Q ss_pred CCCCccEEEeCCcc
Q 030558 75 PNPDWDLILASDIL 88 (175)
Q Consensus 75 ~~~~fD~i~~~~~l 88 (175)
..+.||+|+++..+
T Consensus 109 ~~~~fD~IIgNPPy 122 (524)
T TIGR02987 109 YLDLFDIVITNPPY 122 (524)
T ss_pred ccCcccEEEeCCCc
Confidence 23579999998775
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=63.32 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=69.7
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEEeC
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~~~ 85 (175)
++||=||.|.|..+..+.+.. -.+++.+|+++.++ +.+++..........-+.+.+..+|.. ....++||+|++-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 699999999999999998875 35699999999998 676665554332111233333333322 2223489999984
Q ss_pred CcccCcccc-h--HHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQY-S--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~-~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..= ...+ + --..+++.+.+.|+++|.++..
T Consensus 157 ~td--p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STD--PVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC--CCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 332 1011 0 0148899999999999977776
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=65.98 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=65.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh--------CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CC
Q 030558 7 IERRRCIELGSGTGALAIFLRKA--------MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IP 75 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~--------~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (175)
.++.+|+|-.||+|.+...+.+. ...+++|+|+++.++ ..++.+....+... ......+++.+. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~l~~~~~--~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLLLHGIDN--SNINIIQGDSLENDKFI 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHHHTTHHC--BGCEEEES-TTTSHSCT
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhhhhcccc--ccccccccccccccccc
Confidence 35678999999999999877663 356799999999886 55565655544411 111122333332 22
Q ss_pred -CCCccEEEeCCcccCc--cc----------------chHHHHHHHHHHhhcCCCCceeec
Q 030558 76 -NPDWDLILASDILLYV--KQ----------------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 -~~~fD~i~~~~~l~~~--~~----------------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...||+|+++..+-.. .. ...-..++..+.+.|+++|++.+.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 4689999997665322 00 011235888999999999988776
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-06 Score=68.12 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-------------------------------------------CCcEEEEeCChHHH
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-------------------------------------------NLDITTSDYNDQEI 44 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-------------------------------------------~~~v~~~D~s~~~l 44 (175)
++..++|-+||+|.+.+++|... ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46889999999999998876520 12599999999998
Q ss_pred HHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCCcccCcc-cchHHHHHHHHHH---hhcCCCCceeeccc
Q 030558 45 EDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDILLYVK-QYSNLIKSLSVLL---KSYKPKDSQVGHLT 119 (175)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~~-~~~~~~~~l~~l~---~~l~pgG~~~~~~~ 119 (175)
+.++.|....+....+.....++.+... ...++||+|+++..+..-. ...++..+.+++. +...+|+..++.+.
T Consensus 270 -~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 270 -QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred -HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 8899999988885444444434333221 2235799999997742211 1123334444433 43448888877643
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.6e-07 Score=66.37 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=37.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHH
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~ 52 (175)
.++..++|.+||.|..+..+++..+ ..|+|+|.++.++ +.++...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L 64 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRL 64 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhh
Confidence 4678999999999999999998863 6799999999998 5555444
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-06 Score=59.98 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=55.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-ec-cCCCCCCCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KH-SWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~fD~i~ 83 (175)
++.+||||||++|.++..++++. ...|+|+|+.+... . .+.. .....+... .. ...+..+...+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~--~--~~~~--~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP--L--QNVS--FIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEE--BTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc--c--ccee--eeecccchhhHHHhhhhhccccccCcceec
Confidence 35899999999999999998885 47899999988521 0 0000 000000000 00 00011111236899999
Q ss_pred eCCcccC--------cccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLY--------VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~--------~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+--+... .....-....+.-+.+.|+|||.+++-
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 8542210 111222345555566789999987774
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.8e-06 Score=59.70 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=73.5
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCcc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD 80 (175)
.+..+|.+|||-|.|+|+++.++++..+ .+++.+|+-..-. +.+.+..+..+....+...+-++. ......+..+|
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCccccccccc
Confidence 4567899999999999999999999764 4799999977554 444445566666555555555553 33444466788
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCC-ceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKD-SQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG-~~~~~ 117 (175)
.|+. +.+.+..++..++..+|.+| +++..
T Consensus 180 aVFL--------DlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 180 AVFL--------DLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred eEEE--------cCCChhhhhhhhHHHhhhcCceEEec
Confidence 8876 23344577788888888777 44444
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-05 Score=59.29 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=75.5
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDW 79 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f 79 (175)
+..+|.+|||+.++.|.=+..+++... ..|+++|.++.-+ +.+..|+..-+... +..+..+-..... ...+.|
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence 345789999999999999988888753 4479999999877 67777777766621 1122222111111 112259
Q ss_pred cEEEeC------CcccCccc-------------chHHHHHHHHHHhhcCCCCceeeccccCC
Q 030558 80 DLILAS------DILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 80 D~i~~~------~~l~~~~~-------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
|.|+.- .++...++ ..-+.++|....+.+||||.++.++-...
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 999972 22211111 01257889999999999999999865543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-06 Score=64.20 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCC-CccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNP-DWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~fD~i 82 (175)
+.++||=||.|.|..+..+.+.. ..+|+++|+++.++ +.+++..........-+.+.+..+|.. ....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 57899999999999999997764 35799999999987 666654443211111123333333322 22233 89999
Q ss_pred EeCCcccCcccc-hHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQY-SNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~-~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.-..--..... ---...++.+.+.|+|+|.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 972211000000 01138899999999999977774
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.7e-06 Score=54.32 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=39.1
Q ss_pred cEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCC
Q 030558 11 RCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGI 57 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~ 57 (175)
+++|+|||.|..+..+++... .+|+++|+++.+. +.++++...++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCC
Confidence 489999999999999988742 3699999999997 788888887765
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.1e-05 Score=58.90 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=61.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCC-----------------------------------------cEEEEeCChHH
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNL-----------------------------------------DITTSDYNDQE 43 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~-----------------------------------------~v~~~D~s~~~ 43 (175)
++.++..++|--||+|.+.++.|.. +. .++|+|+++.+
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 4556678999999999999998775 32 37799999999
Q ss_pred HHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 44 IEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+ +.++.|.+.-+....+.+.+.+..+..+.. +.+|+||++...
T Consensus 267 i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPY 309 (381)
T COG0116 267 I-EGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPY 309 (381)
T ss_pred H-HHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCc
Confidence 8 899999998888655555554443332222 689999998763
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-06 Score=63.54 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=70.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.|..++|+|||.|.... ....+.+++.|.+...+ ..+++. +. .......+-.+|+.+.+||.+++..+
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~-~~ak~~----~~----~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLL-GGAKRS----GG----DNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhc-cccccC----CC----ceeehhhhhcCCCCCCccccchhhhh
Confidence 47889999999987442 11245799999988765 332221 11 01222223345677889999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++|+....-...+++++.|+++|||...+.
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 988887778889999999999999975554
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-06 Score=65.04 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=41.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 64 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~ 64 (175)
.++||+-||+|.+++.+|+. ..+|+|+|+++.++ +.+++|...|++ .++.++
T Consensus 198 ~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~A~~Na~~N~i-~n~~f~ 249 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-EDARENAKLNGI-DNVEFI 249 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HHHHHHHHHTT---SEEEE
T ss_pred CcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HHHHHHHHHcCC-CcceEE
Confidence 37999999999999999886 77899999999998 899999999888 334444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-06 Score=63.49 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=65.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh--------hCCCCCCcceeec---cCCCCCCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST--------TNGITPALPHIKH---SWGDAFPI 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~ 74 (175)
...+++|||+|||+|..++.+.......+...|+|...++...-.+.. .+....-...+.- +| ....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg--~~~~ 191 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG--VFNH 191 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc--hhhh
Confidence 346899999999999999998887568899999998775211000000 0000000000000 11 0001
Q ss_pred CC-CCccEEEeCCcccCcccchHHHHH-HHHHHhhcCCCCceeec
Q 030558 75 PN-PDWDLILASDILLYVKQYSNLIKS-LSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~-~~fD~i~~~~~l~~~~~~~~~~~~-l~~l~~~l~pgG~~~~~ 117 (175)
.. -.||+|+++..+|.....+ .+ .......++++|.++++
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~---~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLA---VLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccccchhhhhhhhhhhCcchhh---hhHhhhhhhcCCccchhhhh
Confidence 11 2799999999996655444 33 55666778899988876
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.7e-05 Score=52.77 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=59.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C-CCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-IPNP 77 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~--v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~ 77 (175)
.++.+|+|||+-+|.++..+++..+.. |+++|+.|-... ..+..++.+..+.. . ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------------~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------------PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------------CCceEEeeeccCccHHHHHHHHcCCC
Confidence 457999999999999999999987554 999999883320 11234444432211 1 1223
Q ss_pred CccEEEeCCc--------ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDI--------LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~--------l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|++-.. .-|.....--..++.-...+|+|||.+++-
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 4799986211 101111111234555666799999977774
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=56.11 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=53.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--CCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~i~ 83 (175)
..+|.++|||||++|.++..++++ |..|+++|..+ | ...+. .. +.+.+..++...+. .+.+|+++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l-~~~L~----~~------~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-M-AQSLM----DT------GQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-c-CHhhh----CC------CCEEEEeccCcccCCCCCCCCEEE
Confidence 457899999999999999999887 67999999655 3 12221 11 12222222222221 56899998
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPK 111 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pg 111 (175)
+--+. .+.++.+-+.+.+..|
T Consensus 276 cDmve-------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CDMVE-------KPARVAELMAQWLVNG 296 (357)
T ss_pred Eeccc-------CHHHHHHHHHHHHhcC
Confidence 85442 2225566666666555
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00014 Score=51.90 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=64.4
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCC
Q 030558 2 HHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNP 77 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 77 (175)
++..+.+|.+||-||+.+|..-..++.-.+ ..|+|++.|+...++.+.-.....+. -.+--+-... ....-+
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NI----iPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNI----IPILEDARHPEKYRMLVE 142 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTE----EEEES-TTSGGGGTTTS-
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCce----eeeeccCCChHHhhcccc
Confidence 345567899999999999999988877554 35999999998765444433333233 1221111111 111234
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..|+|++--. ...+..-++.++...||+||.++++
T Consensus 143 ~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 143 MVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 7888887422 2345556777888899999988885
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1e-05 Score=57.36 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD~i~~ 84 (175)
....|+|.-||.|..++.++.. +..|+++|++|.-+ ..++.|.+..|...++.+++.+|.+ .+.+....+|.|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikI-a~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKI-ACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHH-HHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4457999999999999888776 89999999999887 8889999999987777788777744 33455556778887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+... ........-+-.|...++|.|
T Consensus 172 sppw---ggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPW---GGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCC---CCcchhhhhhhhhhhhcchhH
Confidence 6554 333333344444555555553
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=57.50 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC
Q 030558 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 90 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (175)
++|-+|||...++..+-+.+...|+.+|+|+-.+.....++. .... . -.......+.+.+++++||+|+.-..+-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~--~-~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERP--E-MQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCc--c-eEEEEecchhccCCCcceeEEEecCcccc
Confidence 899999999999999877655669999999988744444443 2111 0 11122223456788999999998544421
Q ss_pred cccc-------hHHHHHHHHHHhhcCCCCceeeccc
Q 030558 91 VKQY-------SNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 91 ~~~~-------~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.... ......+.++.|+++|||+++..+.
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1111 1234678899999999998777643
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.4e-05 Score=61.04 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=49.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 69 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (175)
.....++.++|+-||||.+++.+|+. ...|+|+++++.++ +.++.|.+.|+. .+..+..+
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV-~dA~~nA~~Ngi----sNa~Fi~g 438 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAV-EDAEKNAQINGI----SNATFIVG 438 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhc-chhhhcchhcCc----cceeeeec
Confidence 34556788999999999999999886 78899999999998 888999999888 44444444
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0002 Score=46.60 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=42.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI 57 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~ 57 (175)
..+++|+|||++.|..+++++.+++..|+++++++... +..+.+...+..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI 76 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNI 76 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhhee
Confidence 47899999999999999999998788899999999875 666667666544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.7e-05 Score=61.56 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=70.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCCh----HHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYND----QEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..|+|..+|.|.++..|.+. .|+.+..-+ +.+ ..+ ..-|+ --+.++|.+.++.-+.+||+|.++
T Consensus 367 RNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~~~ntL-~vI----ydRGL----IG~yhDWCE~fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD---PVWVMNVVPVSGPNTL-PVI----YDRGL----IGVYHDWCEAFSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhccC---CceEEEecccCCCCcc-hhh----hhccc----chhccchhhccCCCCcchhheehh
Confidence 45999999999999988653 355544433 222 111 12222 234688999999889999999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++-.....-++..++-|+=|+|+|+|.+++-
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 98866565667889999999999999988873
|
; GO: 0008168 methyltransferase activity |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00024 Score=51.77 Aligned_cols=81 Identities=9% Similarity=0.056 Sum_probs=51.8
Q ss_pred ccCCC--cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC----CCCC-CcceeeccCCCC---CCCC
Q 030558 6 WIERR--RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN----GITP-ALPHIKHSWGDA---FPIP 75 (175)
Q Consensus 6 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~----~~~~-~~~~~~~~~~~~---~~~~ 75 (175)
+.+|. +|||+=+|+|..++.++.. |+.|+++|.++... ..++.+.+.. .... ....+.+..++. +.-.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~ 161 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC
Confidence 34566 7999999999999999988 77799999999764 4445444442 1111 002233333332 2222
Q ss_pred CCCccEEEeCCcc
Q 030558 76 NPDWDLILASDIL 88 (175)
Q Consensus 76 ~~~fD~i~~~~~l 88 (175)
..+||+|+.-.++
T Consensus 162 ~~~fDVVYlDPMf 174 (250)
T PRK10742 162 TPRPQVVYLDPMF 174 (250)
T ss_pred CCCCcEEEECCCC
Confidence 3479999986665
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.2e-05 Score=55.46 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=38.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
..++..|||+|.|+|.++..+++. +.+|+++|+++..+ +.++....
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~-~~L~~~~~ 73 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLA-KHLKERFA 73 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHH-HHHHHHCT
T ss_pred CCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHH-HHHHHHhh
Confidence 347889999999999999999888 58999999999886 66665443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.4e-05 Score=50.02 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=53.5
Q ss_pred cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC-CCccEEEeCCcccCc-------ccchHHHHHHHHH
Q 030558 33 DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILASDILLYV-------KQYSNLIKSLSVL 104 (175)
Q Consensus 33 ~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~i~~~~~l~~~-------~~~~~~~~~l~~l 104 (175)
+|+|+|+.++++ ++.+......+...++..+.-+.......-+ +++|+++.+--. -. ...+.-..+++.+
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY-LPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY-LPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB--CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc-CCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999998 7888888877775555555444333333333 489999986332 11 1123456889999
Q ss_pred HhhcCCCCceeecccc
Q 030558 105 LKSYKPKDSQVGHLTK 120 (175)
Q Consensus 105 ~~~l~pgG~~~~~~~~ 120 (175)
.+.|+|||.+.++.|.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999988887554
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00093 Score=48.40 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=73.3
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHH-hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDL 81 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~-~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~ 81 (175)
+..+.|++||=+|=+. ..|+.++. ....+|+.+|+++..+ +.+++.....++ .+....++..+.+|. ..++||+
T Consensus 40 ~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl--~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 40 RGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGL--PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred cCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCC--ceEEEEecccccCCHHHhcCCCE
Confidence 3456899999999543 33344333 3367899999999998 888888888777 367777777777663 3579999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCc-eeeccccCCCCCCCCCCCCCceEeeeeccC-CCcchhHHHHHHHHcC
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDS-QVGHLTKNEQGEGTEGLPWPAFLMSWRRRI-GKEDETIFFTSCENAG 159 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 159 (175)
++.-... ..+.+.-++++....||..|. .++. +.+.. +..-...+.+.+-+.|
T Consensus 116 f~TDPPy----T~~G~~LFlsRgi~~Lk~~g~~gy~~---------------------~~~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 116 FFTDPPY----TPEGLKLFLSRGIEALKGEGCAGYFG---------------------FTHKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp EEE---S----SHHHHHHHHHHHHHTB-STT-EEEEE---------------------E-TTT--HHHHHHHHHHHHTS-
T ss_pred EEeCCCC----CHHHHHHHHHHHHHHhCCCCceEEEE---------------------EecCcCcHHHHHHHHHHHHHCC
Confidence 9997663 345677899999999997662 2221 11111 1111245677777888
Q ss_pred CeeEEe
Q 030558 160 LEVKHL 165 (175)
Q Consensus 160 ~~~~~~ 165 (175)
|.++++
T Consensus 171 l~i~di 176 (243)
T PF01861_consen 171 LVITDI 176 (243)
T ss_dssp -EEEEE
T ss_pred cCHHHH
Confidence 887766
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.7e-05 Score=56.01 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=62.1
Q ss_pred CcEEEeCCC--ccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-----CCCCcc
Q 030558 10 RRCIELGSG--TGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG--~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~fD 80 (175)
...|||||| |-.....+|+.. .++|+-+|.+|-.+ .+.+..+..+.. .....+..+..+.... -.+.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 459999999 344556666644 67899999999775 554444333221 1234455444321100 011222
Q ss_pred -----EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 81 -----LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 -----~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.+++..+++|..+.++...+++.+...|.||+.++++...
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 6778888888888788999999999999999999998443
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=54.17 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=55.5
Q ss_pred CCcEEEeCCCc-cHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHh-hCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 9 RRRCIELGSGT-GALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.++|+=||||+ -..++.+++.. +..|+++|+++..+ +..++-.. ..++..++..+..+..+. ...-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDV-TYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcc-ccccccCCEEEE
Confidence 45999999997 55567777643 56799999999887 55544444 334444455554443221 222357999998
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...... .++-.+++.++.+.++||..+++-
T Consensus 199 AalVg~~--~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMD--AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhcccc--cchHHHHHHHHHhhCCCCcEEEEe
Confidence 8776211 224459999999999999876664
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0043 Score=44.32 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-CccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD~i~~ 84 (175)
.+.++.|+||-.|.+..++.+.. ...+++.|+++.-+ +.+.++...+++. +.+....++.++ +..+ .+|+|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~---~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLS---ERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCc---ceEEEeccCCccccCccCCcCEEEE
Confidence 46679999999999999988864 45699999999998 7778888888874 444555555554 3333 7999888
Q ss_pred CCcccCcccchHHHHHHHHHHhhcC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYK 109 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~ 109 (175)
+.+= . ..+..++++-...++
T Consensus 92 AGMG---G--~lI~~ILee~~~~l~ 111 (226)
T COG2384 92 AGMG---G--TLIREILEEGKEKLK 111 (226)
T ss_pred eCCc---H--HHHHHHHHHhhhhhc
Confidence 7663 1 234466666666555
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.2e-05 Score=56.81 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=73.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i 82 (175)
..++.+|||+.++.|.=+..+++... ..|++.|+++.-+ ..++.+.+..+... +.....+.....+ .....||.|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEEeeccccccccccccccchh
Confidence 34678899999999999999988764 5799999999887 77777777766621 1111111111111 122369999
Q ss_pred EeCCc------ccCccc---------c----hHHHHHHHHHHhhc----CCCCceeeccccC
Q 030558 83 LASDI------LLYVKQ---------Y----SNLIKSLSVLLKSY----KPKDSQVGHLTKN 121 (175)
Q Consensus 83 ~~~~~------l~~~~~---------~----~~~~~~l~~l~~~l----~pgG~~~~~~~~~ 121 (175)
+.-.. +...++ . .-+.++++.+.+.+ ||||+++.++-..
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 97211 111111 0 12467888999999 9999999984433
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=45.54 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=64.9
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCc
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDW 79 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f 79 (175)
+-.+.+|++||=||+-+|.....++.-.+ ..+++++.|+.+.++.+.-.....+. -.+..+-... ....-+..
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni----~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI----IPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc----eeeecccCCcHHhhhhcccc
Confidence 44567899999999999999988877655 45999999998876655544444333 1121111000 01112345
Q ss_pred cEEEeCCcccCcccchHH-HHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNL-IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~-~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+. .-..+++ .-+..++..-||++|.++++
T Consensus 147 Dviy~------DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQ------DVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEE------ecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 55554 2333333 34556777889999977775
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=49.82 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=82.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHH-HHHHHHhhC--CC---------------CCCcceeeccC-
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIED-NIAYNSTTN--GI---------------TPALPHIKHSW- 68 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~-~~~~~~~~~--~~---------------~~~~~~~~~~~- 68 (175)
..-+||==|||.|+++..++.. |...-|-+.|--|+.- ..-.|.... .. ..++..+.+..
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4567888999999999999776 7777777888877531 111111110 00 01111111110
Q ss_pred ----------------CCCCC-----CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec---cccCCCC
Q 030558 69 ----------------GDAFP-----IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH---LTKNEQG 124 (175)
Q Consensus 69 ----------------~~~~~-----~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~---~~~~~~~ 124 (175)
||..+ -..+.||+|+... +...-.++...++.+..+|||||..+=. .|...+.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 11111 0123699998874 4466778999999999999999955443 1111111
Q ss_pred CCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 125 EGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
... .+... -..+.+++...++..||+++.-
T Consensus 306 ~g~----~~~~s-------iEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 306 HGV----ENEMS-------IELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CCC----ccccc-------ccccHHHHHHHHHhcCcEEEEe
Confidence 110 00000 0123588999999999997764
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00067 Score=51.93 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHh---hCCCCCCcceeeccCCCCCC---CCCCCccE
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST---TNGITPALPHIKHSWGDAFP---IPNPDWDL 81 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~fD~ 81 (175)
-.++|=+|.|.|.-..++.+.. -.+++-+|.+|+|+ +..+.+.. .|.-.-.-+.++....|... ...+.||+
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 3679999999999999998876 45799999999998 44442211 11111122233322233322 23458999
Q ss_pred EEeCCcccCcccchHH-----HHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNL-----IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~-----~~~l~~l~~~l~pgG~~~~~ 117 (175)
||.--. .++.+.+ .++..-+.+.++++|.+++.
T Consensus 369 vIVDl~---DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 369 VIVDLP---DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEeCC---CCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 987311 1222221 24555677889999988886
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00042 Score=52.89 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCccccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030558 2 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
++....+|++|+=.|+| .|..+..+|+..+.+|+++|.|++.. +.+++-.... .+.....+..+.-.+.||
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd~-------~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGADH-------VINSSDSDALEAVKEIAD 231 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCcE-------EEEcCCchhhHHhHhhCc
Confidence 34456678999999886 68888999998899999999999876 4444322221 111111111121122499
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|+..-. ...+....+.|+++|++++.-
T Consensus 232 ~ii~tv~----------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 232 AIIDTVG----------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEEECCC----------hhhHHHHHHHHhcCCEEEEEC
Confidence 9987422 267788999999999999883
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0038 Score=46.68 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=45.8
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-CCCccEEEeCCcc
Q 030558 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~i~~~~~l 88 (175)
+++|+-||.|.++.-+.+.+...+.++|+++..+ +..+.|...... ..+..+..... .+.+|++++....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~~~-------~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNKLI-------EGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCCCc-------cCccccCchhhcCCCCCEEEeCCCC
Confidence 6999999999999988776444489999999887 666665432111 11111111111 3469999987654
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=54.18 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=66.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCCCCC-CCCcc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAFPIP-NPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~fD 80 (175)
+.++.++|||+|.|+|.-...+...+ -..++.++-|+.. .+... .++.+......+.-.-++ .+.++++ ...|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~-tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGD-TLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHH-HHHhhcccccCCCCCCccchhccCCCccceee
Confidence 34567889999999887655543322 1236666666633 22222 222222211111111111 1223332 34788
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCC
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
+++..+-+-+......+...++.+...+.|||.++++..+..
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 888877664555555566789999999999999999854443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.39 E-value=1.3e-05 Score=50.95 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=34.4
Q ss_pred EEeCCCccHHHHHHHHhC--C--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCccEEEe
Q 030558 13 IELGSGTGALAIFLRKAM--N--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDWDLILA 84 (175)
Q Consensus 13 LDlGcG~G~~~~~l~~~~--~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~fD~i~~ 84 (175)
||+|+..|..+..+++.. . .+++++|..+. . +..++..+..+...+ +++..++.. + +..++||+++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~---~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDR---VEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BT---EEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCe---EEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 699999999888777643 2 37999999984 1 222222222222222 233333221 1 22468999887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-.. +..+....-++.+.+.++|||.+++
T Consensus 76 Dg~----H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 DGD----HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ES-------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCC----CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 432 2234555778889999999997765
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00025 Score=55.20 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=68.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CCCCCCCccEEE
Q 030558 9 RRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLIL 83 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~i~ 83 (175)
+-+|||.=||+|.=++.++++. ..+|++-|+|++++ +.+++|...|+.... .+.....|. +......||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~~N~~~N~~~~~--~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIKRNLELNGLEDE--RIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHHHHHHHCT-SGC--CEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHHHhHhhccccCc--eEEEehhhHHHHhhhccccCCEEE
Confidence 4589999999999999998984 35799999999997 889999999988541 222222221 122456899886
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. |.+ .....++..+.+.++.||.++++.
T Consensus 127 l-DPf------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 L-DPF------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E---S------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred e-CCC------CCccHhHHHHHHHhhcCCEEEEec
Confidence 5 222 233489999999999999999983
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00059 Score=53.38 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=46.8
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 65 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (175)
.-|||||.|||.+++.++..++..|+|++.=-.|. +.+.+....++.+..+..|.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeec
Confidence 45899999999999999999878899999988897 88888888888877666664
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00074 Score=47.59 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=58.9
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCC---CCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT---PALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
-.+.|||||.|.+.+.++..+ ..-+.|++|-.... ++.+..++.-... ...+++..--.+.+.+.++.|.---.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVs-dYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVS-DYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHH-HHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 458999999999999998876 34489999988764 6655554442211 112222222222222222222222222
Q ss_pred CcccCcccchH----------HHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSN----------LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~----------~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-+++..++..- -..++.+..=++++||.++..
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 22211121110 025667777889999988876
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0024 Score=51.59 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=65.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--------------
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-------------- 70 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 70 (175)
..++++|+=+|||. |..++..++..|..|+++|.+++.+ +.++.. +. ..+..+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rl-e~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVA-EQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 45789999999996 9999999998899999999999776 443321 11 111111000
Q ss_pred CC------CCCC--CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 71 AF------PIPN--PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 71 ~~------~~~~--~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+. .+.+ +.+|+|+..... +.......+.++..+.+||||+++..-
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 0011 468999987654 322112233599999999999887763
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=5.1e-05 Score=50.97 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=43.3
Q ss_pred CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCC
Q 030558 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 123 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~ 123 (175)
..|.+++.|+|++.+++.|.. .+....++++.++.|||||.+-++.++..-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt-~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLT-YDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHh-HHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 567889999999999985554 577889999999999999999999777653
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0038 Score=47.12 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=63.8
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee--ccCCCCC--CCCCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK--HSWGDAF--PIPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 78 (175)
....|.+||=+|+|+ |..+...|+..| .+|+.+|.++.-+ +.+++-... .. .+...-. .+..+.. ..-...
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~-~~-~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGAT-VT-DPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCe-EE-eeccccccHHHHHHHHHhhccccC
Confidence 455789999999997 999998888775 5699999999887 555542111 11 0000000 0000000 011235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|+.+...-+ . ..++.....++++|+++++.
T Consensus 243 ~d~~~dCsG~---~------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 243 PDVTFDCSGA---E------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCeEEEccCc---h------HHHHHHHHHhccCCEEEEec
Confidence 8888876544 1 66777788999999977763
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0044 Score=48.34 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=72.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCcc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 80 (175)
+..+|-||||..+-+|.=+.++|.... ..|+|.|.+.+-+ +.+..|++..+....+.. .++ +..++ ...++||
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~-n~D-~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVS-NYD-GREFPEKEFPGSFD 314 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEE-ccC-cccccccccCcccc
Confidence 445789999999999988888877653 3599999999887 777888887776321111 111 11111 1233899
Q ss_pred EEEeCC------cccCccc-------------chHHHHHHHHHHhhcCCCCceeecc
Q 030558 81 LILASD------ILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~------~l~~~~~-------------~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
-|+.-. ++.-..+ ..-+.++|-.+...+++||.++.++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 998622 2211110 1224678888889999999998883
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0027 Score=48.74 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=72.2
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
..+|||-=||+|.=++.++.+.+. +|+.-|+||.++ +.++.|...|.. .....+.-+-...+......||+|=. |.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CC
Confidence 678999999999999999998766 799999999998 888889888722 11122211110111222357887644 33
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+ .++ ..++....+.++.+|.+.++..+.
T Consensus 130 F---GSP---aPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 130 F---GSP---APFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred C---CCC---chHHHHHHHHhhcCCEEEEEeccc
Confidence 3 322 388888999999999999884443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0057 Score=47.01 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=58.3
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.++++||=.|||. |..+..+++..+. +|+++|.+++.+ +.+++. +....+..-..+..+ .....+.+|+|+-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~l----Ga~~vi~~~~~~~~~-~~~~~g~~D~vid 241 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLAREM----GADKLVNPQNDDLDH-YKAEKGYFDVSFE 241 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHHc----CCcEEecCCcccHHH-HhccCCCCCEEEE
Confidence 4678899899875 8888888888777 599999998775 443321 110000000000001 1111235898876
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- .+ ..++...+.++++|+++..
T Consensus 242 ~~G------~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 242 VSG------HP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 422 12 4677788899999988876
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0085 Score=46.77 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=63.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhC----------------CCcEEEEeCChHHHH---HHHHHHHhh----CC----CCCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM----------------NLDITTSDYNDQEIE---DNIAYNSTT----NG----ITPAL 61 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~----------------~~~v~~~D~s~~~l~---~~~~~~~~~----~~----~~~~~ 61 (175)
.-+|+|+|||+|.+++.+.... ..+|..-|...+... ..+...... .. .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 4579999999998885442211 245788888765431 221110000 00 00010
Q ss_pred ceeeccCCCCCC--CCCCCccEEEeCCcccCcccc-h-----------------------------------HHHHHHHH
Q 030558 62 PHIKHSWGDAFP--IPNPDWDLILASDILLYVKQY-S-----------------------------------NLIKSLSV 103 (175)
Q Consensus 62 ~~~~~~~~~~~~--~~~~~fD~i~~~~~l~~~~~~-~-----------------------------------~~~~~l~~ 103 (175)
.++....+.... ++.++.++++++.++ ||.+. + ++..+|+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233322 677899999999998 55542 1 23445555
Q ss_pred HHhhcCCCCceeeccccCC
Q 030558 104 LLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 104 l~~~l~pgG~~~~~~~~~~ 122 (175)
-.+-|.|||+++++..+..
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhccCcEEEEEEecCC
Confidence 5677899999999965543
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=44.88 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=58.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..+|.+||=.|+|. |..+..+++..+.+|++++.+++.. +.+++. +.. .+ ++..+ ...+.+|+++.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~~----Ga~----~v-i~~~~---~~~~~~d~~i~ 229 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALAL----GAA----SA-GGAYD---TPPEPLDAAIL 229 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHh----CCc----ee-ccccc---cCcccceEEEE
Confidence 44688999999864 7777888888888999999988765 443322 110 00 00001 11235787665
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.... . ..+....+.++++|++++.
T Consensus 230 ~~~~------~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 230 FAPA------G---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CCCc------H---HHHHHHHHhhCCCcEEEEE
Confidence 4332 2 5678888999999998775
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0065 Score=40.78 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC--CccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP--DWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~fD~i~~~ 85 (175)
+.++.+|||+|.|+.-+..++++...-+|++.++..+ .+.+......++.....+..- +...+.-+ .+-+|+..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a~R~g~~k~trf~Rk---dlwK~dl~dy~~vviFga 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHAWRAGCAKSTRFRRK---DLWKVDLRDYRNVVIFGA 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHHHHHhcccchhhhhh---hhhhccccccceEEEeeh
Confidence 4467999999999999999888557899999999987 676666666666433333322 22222222 23344443
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+ +..+-.++..-+..+..++..
T Consensus 148 es~--------m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 148 ESV--------MPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred HHH--------HhhhHHHHHhhCcCCCeEEEE
Confidence 332 224445555566666655543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.005 Score=47.32 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=59.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-----------C------CcEEEEeCChHHH---HHHHHHHHhhCCCCCCcceeecc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-----------N------LDITTSDYNDQEI---EDNIAYNSTTNGITPALPHIKHS 67 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-----------~------~~v~~~D~s~~~l---~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
+.-+|+|+||-+|..++.+.+.. + .+|+.-|...+.. -..+......... ...-++...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 34679999999999997544322 1 3689999977542 1222111100000 001122222
Q ss_pred CCCCCC--CCCCCccEEEeCCcccCcccc-------------------------------------hHHHHHHHHHHhhc
Q 030558 68 WGDAFP--IPNPDWDLILASDILLYVKQY-------------------------------------SNLIKSLSVLLKSY 108 (175)
Q Consensus 68 ~~~~~~--~~~~~fD~i~~~~~l~~~~~~-------------------------------------~~~~~~l~~l~~~l 108 (175)
.+.... +++++.|+++++.++ ||.+. .++..+|+.-.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 233322 678899999998888 44431 12445556666788
Q ss_pred CCCCceeeccccCCC
Q 030558 109 KPKDSQVGHLTKNEQ 123 (175)
Q Consensus 109 ~pgG~~~~~~~~~~~ 123 (175)
+|||+++++..+...
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 999999999554433
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.035 Score=42.05 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=54.6
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
+++++|=+|||. |.++..+++..+.+ |.++|.++..+ +.+.. . .. + +..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl-~~a~~---~-~~------i--~~~~~---~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR-DGATG---Y-EV------L--DPEKD---PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-Hhhhh---c-cc------c--Chhhc---cCCCCCEEEEC
Confidence 567888889875 88888888887876 67788877654 22221 0 00 0 00000 12468988864
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-- .+ ..++...+.++++|++++.
T Consensus 208 ~G------~~---~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 208 SG------DP---SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CC------CH---HHHHHHHHhhhcCcEEEEE
Confidence 22 12 4677888999999988875
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0068 Score=43.99 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCc
Q 030558 2 HHREWIERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 79 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~--v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 79 (175)
++..+.+|.+||=||+++|..-...+.-.+.+ |++++.|+..=++.+ +...... ..++.+ ++-..+...-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~--nmAkkRt-NiiPIi-----EDArhP~KYR 221 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI--NMAKKRT-NIIPII-----EDARHPAKYR 221 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH--HHhhccC-Cceeee-----ccCCCchhee
Confidence 45567789999999999999887776665554 999999885421111 1111111 112222 1111111111
Q ss_pred cEEEeCCcccCcccchHHHHHH-HHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~~ 117 (175)
=+|-+.+++|.....+++.+++ -+...-||+||.|++.
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 1233344443333344443443 3566789999999887
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0013 Score=49.04 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCcEEEeCCCccHHHH-HHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAI-FLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~-~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+..|.|+-+|.|.+++ ++...++..|.|+|++|..+ ++++++.+.|+...+...+..+. ..+-++..-|-|...-.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~--R~~~~~~~AdrVnLGLl 271 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDN--RNPKPRLRADRVNLGLL 271 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhccc--cccCccccchheeeccc
Confidence 5679999999999998 77777677899999999998 89999999887633222222111 12234456676665422
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~ 113 (175)
++-+ +-...++++|+|.|-
T Consensus 272 ----PSse---~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 272 ----PSSE---QGWPTAIKALKPEGG 290 (351)
T ss_pred ----cccc---cchHHHHHHhhhcCC
Confidence 2222 333345566666654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0019 Score=40.77 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=27.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCCh
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYND 41 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~ 41 (175)
.....|||||+|.+...|.++ |..=+|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 456999999999999999887 88888999855
|
; GO: 0008168 methyltransferase activity |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.041 Score=40.91 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=71.2
Q ss_pred CCCccccCCCcEEEeCCCccHHHHHHHH-hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCC
Q 030558 1 MHHREWIERRRCIELGSGTGALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPD 78 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~-~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (175)
|..++.+.|+.|+=+| -.-..++.++- ....+|..+|+++..+ .-..+-.+..+. .++..+.+++.+.+| .....
T Consensus 145 m~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~k 221 (354)
T COG1568 145 MYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRK 221 (354)
T ss_pred eccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCc-cchhheeehhcccChHHHHhh
Confidence 3456778899999999 44455555443 3367899999999887 666766666666 346677777776666 34568
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCC
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPK 111 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg 111 (175)
||+++.-.. +..+.+..++..=...||.-
T Consensus 222 FDvfiTDPp----eTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 222 FDVFITDPP----ETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred CCeeecCch----hhHHHHHHHHhccHHHhcCC
Confidence 999876433 33445666777666777755
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=42.97 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=41.3
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHH---HHHHHHHHHhhCCC-CCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQE---IEDNIAYNSTTNGI-TPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~---l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
+|||.=+|-|..++.++.. |++|++++-||-+ +...+++....... ......+++..++.. +.++++||+|.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred EEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 8999999999999999875 8899999999954 22333333222121 112234445555443 34467999999
Q ss_pred eCCcc
Q 030558 84 ASDIL 88 (175)
Q Consensus 84 ~~~~l 88 (175)
.-.++
T Consensus 157 ~DPMF 161 (234)
T PF04445_consen 157 FDPMF 161 (234)
T ss_dssp E--S-
T ss_pred ECCCC
Confidence 96665
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=41.47 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=49.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-C-
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-I- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~- 74 (175)
.+++.|+|+|.-.|.-++.+|+.+ ..+|+++|++.... .+...+......++..+..+..+.. . .
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~---~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH---NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh---chHHHhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence 367899999999988887766533 46799999965332 1122222222334455554443211 1 1
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
......+|+. ++= ...+...+.|+.....+++|+.+++.
T Consensus 108 ~~~~~vlVil-Ds~---H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 108 SPPHPVLVIL-DSS---HTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp ---SSEEEEE-SS-------SSHHHHHHHHHHT--TT-EEEET
T ss_pred ccCCceEEEE-CCC---ccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 1123334443 222 11234558888899999999987775
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.018 Score=44.57 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=61.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec-cCC-CCCCCCC-CCccE
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWG-DAFPIPN-PDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~fD~ 81 (175)
.++.+|+=+|||+ |.++..+++..+ ..|+++|.++.-+ +.+++....... ..... +.. ....... ..+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~~~g~~~~----~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKEAGGADVV----VNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHhCCCeEe----ecCccccHHHHHHHHhCCCCCCE
Confidence 4455899999997 999988888765 5699999999887 444431111100 00000 000 0001112 36899
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++-..- .+ .++....+.++|+|++.+.
T Consensus 242 vie~~G------~~---~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 242 VIEAVG------SP---PALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEECCC------CH---HHHHHHHHHhcCCCEEEEE
Confidence 886533 12 5888999999999999888
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.037 Score=44.84 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-----CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-----LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIP 75 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-----~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 75 (175)
+..+|+|-.||+|.+-...++..+ ..++|.|+++... ..++-|.-.++... ......++.+ ...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~ 261 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDD 261 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCCCc---cccccccccccCCcccccCC
Confidence 456899999999998876666542 4589999999886 66677777766622 1222222211 123
Q ss_pred CCCccEEEeCCccc--Cccc--------------------chHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILL--YVKQ--------------------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~--~~~~--------------------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.||+|+++..+. .|.. ...-...++++...++|+|+..++
T Consensus 262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 45799999976652 0000 011267889999999998866655
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.059 Score=38.02 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=72.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCc--EEEEeCChHH---------HHHHHHHHHhhCCCCCCcceeeccCCCCCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQE---------IEDNIAYNSTTNGITPALPHIKHSWGDAFP 73 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~--v~~~D~s~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (175)
+..+|.+|+|+=-|.|.++..++...+.+ |+++=..+.. +....++....|.. .+...... +.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e--~~~~~~~A----~~ 118 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVE--VIGKPLVA----LG 118 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhh--hhCCcccc----cC
Confidence 45689999999999999999998876544 6666544321 10111111111100 00011000 11
Q ss_pred CCCCCccEEEeCCcccCcc-----cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcch
Q 030558 74 IPNPDWDLILASDILLYVK-----QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 148 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~-----~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (175)
.....|+++.+... |.. +.....++..++++.|||||.+.+..-.... ..+.-......+. +.
T Consensus 119 -~pq~~d~~~~~~~y-hdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p-------G~~~~dt~~~~ri---~~ 186 (238)
T COG4798 119 -APQKLDLVPTAQNY-HDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP-------GSGLSDTITLHRI---DP 186 (238)
T ss_pred -CCCcccccccchhh-hhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC-------CCChhhhhhhccc---Ch
Confidence 22233444432221 111 1334458899999999999987775111100 0000000011122 34
Q ss_pred hHHHHHHHHcCCeeEEe
Q 030558 149 TIFFTSCENAGLEVKHL 165 (175)
Q Consensus 149 ~~~~~~~~~~g~~~~~~ 165 (175)
...+...+.+||..+--
T Consensus 187 a~V~a~veaaGFkl~ae 203 (238)
T COG4798 187 AVVIAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHHHHhhcceeeee
Confidence 77888899999976543
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0075 Score=44.07 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=46.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
...+|+|||||-=-+++...... +..|+|.|++..++ +.+.......+. .....+.|... ......|+.+..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~-----~~~~~v~Dl~~~~~~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGV-----PHDARVRDLLSDPPKEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT------CEEEEEE-TTTSHTTSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCC-----CcceeEeeeeccCCCCCcchhhHH
Confidence 36899999999988887654432 56899999999987 677666655444 12222223332 234578999997
Q ss_pred Ccc
Q 030558 86 DIL 88 (175)
Q Consensus 86 ~~l 88 (175)
-++
T Consensus 179 K~l 181 (251)
T PF07091_consen 179 KTL 181 (251)
T ss_dssp T-H
T ss_pred HHH
Confidence 776
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0065 Score=43.83 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCCcEEEeCCCccHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCC-CCC---CCCCCccE
Q 030558 8 ERRRCIELGSGTGAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGD-AFP---IPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~---~~~~~fD~ 81 (175)
++.++||||.|.--. -+.=..+.+...+|+|+++..+ +.++.++..| ++...+........+ .++ ...+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl-~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSL-SSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHH-HHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 567789998765321 1111223378899999999988 7777777777 554333333222211 112 23568999
Q ss_pred EEeCCcc
Q 030558 82 ILASDIL 88 (175)
Q Consensus 82 i~~~~~l 88 (175)
++|+..+
T Consensus 157 tlCNPPF 163 (292)
T COG3129 157 TLCNPPF 163 (292)
T ss_pred EecCCCc
Confidence 9999987
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.043 Score=42.29 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=66.8
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC-C----cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN-L----DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P 73 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~----~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 73 (175)
+..++.+|||+.+-+|.=+..+.+... . .|++-|.++.-+..........+.....+........... +
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 456899999999999999987766542 1 6999999986431111111111111111111111111111 1
Q ss_pred CCCCCccEEEe-----CCccc-------Cc--------ccchHHHHHHHHHHhhcCCCCceeeccccCCC
Q 030558 74 IPNPDWDLILA-----SDILL-------YV--------KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 123 (175)
Q Consensus 74 ~~~~~fD~i~~-----~~~l~-------~~--------~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~ 123 (175)
..-..||-|++ .+... .. .-..-+..++..-++.||+||+++.++-....
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 12236888876 22211 00 00123467888999999999999999655543
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0071 Score=42.25 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=30.7
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCCh
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYND 41 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~ 41 (175)
.-+.++.+|||+||.+|+++..+.++.+ ..|.|+|+-.
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3456789999999999999998877763 3499999844
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.018 Score=43.73 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=60.6
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCCCc
Q 030558 6 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~f 79 (175)
..++.+||-.|+| .|..+..+++..+.+|++++.++... +.++. .+. ..+........ ....+.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-ELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCc
Confidence 4467889999887 48888889998899999999998775 44432 112 11110010000 1233468
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+++.... .. ..+++..++|+++|+++..
T Consensus 234 D~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFVG------TQ---PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 98876421 11 5778889999999988875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0026 Score=50.50 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=72.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD~ 81 (175)
.++-+|||.=|++|.-++..|++. ..+|++-|.+++.+ +.+++|.+.|+....+.....+... ..+-....||+
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 456789999999999999999976 34699999999998 8888898888553222221111110 11222468998
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|-.- .+ .... .+|..+.+.++.||.++++.
T Consensus 187 IDLD-Py---Gs~s---~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDLD-PY---GSPS---PFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred EecC-CC---CCcc---HHHHHHHHHhhcCCEEEEEe
Confidence 8762 22 2222 78888899999999999983
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0092 Score=44.01 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=29.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCC---------CcEEEEeCChHHHHHHHHHH
Q 030558 10 RRCIELGSGTGALAIFLRKAMN---------LDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~---------~~v~~~D~s~~~l~~~~~~~ 51 (175)
-+|+|+|+|+|.++..+.+... .+++.+|+|+.+- +..++.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~ 69 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKER 69 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHH
Confidence 6899999999999988776542 3699999999874 444433
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0091 Score=47.21 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhh---CCCCCCcceeeccCCCCCCC-CCCCcc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHSWGDAFPI-PNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~fD 80 (175)
....+.|+|+|.|.-.-.+.... ...++.+|.+..|. +....+... ++. ..+..+.+.- ..++. ..+.||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~-~~~e~~lr~~~~~g~-~~v~~~~~~r-~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAML-KQSEKNLRDGSHIGE-PIVRKLVFHR-QRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHH-HHHHHhhcChhhcCc-hhccccchhc-ccCCCCccccee
Confidence 44668889888765443332221 34699999999997 444433332 111 1122211111 12333 344699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHh-hcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~-~l~pgG~~~~~ 117 (175)
+|++++.+++.........+.+.+++ ...+|+.+++.
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 99999999888877777777777776 44566666666
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.18 Score=38.50 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.3
Q ss_pred EEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHH
Q 030558 12 CIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~ 52 (175)
|+|+-||.|.++.-+.+. |.+ +.++|+++..+ +..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~-~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQ-KTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHH-HHHHHhC
Confidence 689999999999999766 566 67899999886 5656554
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.077 Score=41.54 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=63.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec-cCCCCC-CC-CCCCcc
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PI-PNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~fD 80 (175)
..++.+||.+|||. |..+..+++..+. +|+++|.++... +.++... +. ..+..... ++.+.. .. ....+|
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSHL---GA-ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 34678999999987 9899999998886 499999999876 4444321 11 00010000 010101 11 123689
Q ss_pred EEEeCCcc-------cCc-----ccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDIL-------LYV-----KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l-------~~~-----~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-.-.- +.. ....+....++++.++++|+|+++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 88874210 000 00011136789999999999988876
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.028 Score=42.23 Aligned_cols=45 Identities=7% Similarity=-0.084 Sum_probs=36.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.+|+.|||-=||+|..+..+.+ .+.+.+|+|++++.+ +.+.+.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~-~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYI-KMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHH-HHHHHHHH
Confidence 4689999999999998877755 499999999999887 55554443
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.033 Score=41.69 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=68.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---C-CCCCCc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P-IPNPDW 79 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~f 79 (175)
.+...+++|=||.|.|......+++. -.++..+|++...++ .-+.-...-...-.-+.+.+..+|.. . ...++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie-~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIE-SSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHH-HHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 34567899999999999887776653 235899999997764 32222222111112234444444432 2 236799
Q ss_pred cEEEe--CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILA--SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~--~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+. ++.. .....--+...++-+.+.||++|.++..
T Consensus 197 dVii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 197 DVIITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred eEEEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99996 3333 1111113457778888999999987776
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.074 Score=40.91 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=55.9
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHh-C-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 7 IERRRCIELGSGT-GALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~-~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.+|.+||=+|||. |..+..+++. . +.+|+++|.+++.+ +.++. .+. ... . +... ....+|+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a~~----~~~----~~~-~---~~~~-~~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DLFSF----ADE----TYL-I---DDIP-EDLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHHhh----cCc----eee-h---hhhh-hccCCcEEE
Confidence 4688999999975 7777776664 3 56899999988665 44332 111 000 0 0111 111488887
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.--- ...+ ..++...+.++++|++++.
T Consensus 228 D~~G~---~~~~---~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 228 ECVGG---RGSQ---SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred ECCCC---CccH---HHHHHHHHhCcCCcEEEEE
Confidence 53210 0012 6788899999999998875
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.036 Score=44.97 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=64.2
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--------------C
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--------------A 71 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 71 (175)
.++.+++=+|+|. |..+..+++..|..|+++|.++..+ +.++.. +. ..+..+..+ +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rl-e~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVK-EQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC----eEEeccccccccccccceeecCHH
Confidence 4578999999996 8888888888899999999999765 443321 11 111111100 0
Q ss_pred --------CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 72 --------FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 72 --------~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++..-..+|+|+..-.+ +..+.+.-+.+++.+.+|||+.++-.
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tali---pG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALI---PGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECccc---CCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11112469999887665 33333235778889999999876644
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.047 Score=39.68 Aligned_cols=44 Identities=7% Similarity=-0.063 Sum_probs=35.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~ 52 (175)
.+|..|||-=||+|..+....+ .+.+++|+|+++... +.+.+.+
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~-~~~~~r~ 205 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYH-RAGQQRL 205 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHH-HHHHHHH
Confidence 3688999999999998877755 499999999999886 4444333
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0059 Score=39.91 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=54.7
Q ss_pred CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCCCccEEEeCCcccCcc
Q 030558 18 GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNPDWDLILASDILLYVK 92 (175)
Q Consensus 18 G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~fD~i~~~~~l~~~~ 92 (175)
|.|..+..+++..|.+|+++|.++.-+ +.+++.... ..+.....+ .+ + .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~-~~~~~~Ga~-------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKL-ELAKELGAD-------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHTTES-------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHH-HHHHhhccc-------ccccccccccccccccccccccceEEEEecC-----
Confidence 568899999998899999999999775 555432211 111111111 01 1 12247999987533
Q ss_pred cchHHHHHHHHHHhhcCCCCceeec
Q 030558 93 QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 93 ~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ ..++....+++|+|++++.
T Consensus 68 -~~---~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 -SG---DTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp -SH---HHHHHHHHHEEEEEEEEEE
T ss_pred -cH---HHHHHHHHHhccCCEEEEE
Confidence 12 7888999999999999887
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=37.52 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=65.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-----CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCC-Ccc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-----LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNP-DWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-----~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~fD 80 (175)
.+++.+|+|+|+..=+..+..... ..++.+|+|...++..++...+. .....+..+..+....+. .+.. .-=
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~-y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE-YPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh-CCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 468899999999988877656442 46999999999885555433333 332222222222211111 1111 222
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++...++-+ ..+.+-..++.++...++||-.+.+-
T Consensus 157 ~~flGStlGN-~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGN-LTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccC-CChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3444445522 33556678899999999999877776
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.09 Score=38.36 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=58.3
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
.++.+||-.|+|+ |.....+++..+.+|++++.++... +.++.. +....+........... ....+.+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKL-ELAKEL----GADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 4678999999985 7777888888789999999988664 443321 11000000000000000 112347999986
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...- . ..++.+.+.++++|+++..
T Consensus 208 ~~~~------~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 208 AVGG------P---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CCCC------H---HHHHHHHHhcccCCEEEEE
Confidence 4221 1 4566678888999988876
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.2 Score=38.28 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=57.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--C-CCC-CCCCc
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--A-FPI-PNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~f 79 (175)
..+|.+||=+|+|. |..+..+++..+.+ |+++|.+++.. +.++.. +.. ..+.....+ . ... ....+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~-~~~~~~----ga~---~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERL-ELAKAL----GAD---FVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCC---EEEcCCcchHHHHHHHhCCCCC
Confidence 34578888888874 77778888888888 99999988765 333321 110 011000000 0 011 12368
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+-... .+ ..+....+.++++|++++.
T Consensus 233 d~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 233 DVAIECSG------NT---AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CEEEECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 98885422 11 4556778889999988865
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=38.09 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=57.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccEE
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~i 82 (175)
.++++||=.|+|. |..+..+++..+.+ |+++|.++..+ +.++.. +....+... ...+.. .. ....+|++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~--~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSF----GATALAEPE--VLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHc----CCcEecCch--hhHHHHHHHhCCCCCCEE
Confidence 3678899899875 88888888887876 99999888665 333321 110000000 000000 01 12358888
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.-. .+ ..++...+.++|+|+++..
T Consensus 192 id~~G------~~---~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 192 LEFSG------AT---AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EECCC------Ch---HHHHHHHHHhcCCCEEEEe
Confidence 76321 12 5677888999999988876
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.0073 Score=38.38 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=29.7
Q ss_pred CccEEEeCCcccCccc----chHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.||+|+|-.+. .|-+ .+.+..+++.+++.|+|||.+++-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999997775 4433 346788999999999999988885
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=39.39 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=57.0
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeC---ChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccE
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDY---NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~---s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~ 81 (175)
.++.+||=+|+|. |.++..+++..+.+|++++. ++... +.+++ .+. ..+.....+.. ....+.+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~----~Ga----~~v~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEE----LGA----TYVNSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHH----cCC----EEecCCccchhhhhhcCCCCE
Confidence 4688999999985 88888888888889999987 44443 32221 122 11110000000 011246888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-.-- .+ ..+.+..+.++++|++++.
T Consensus 242 vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 242 IIEATG------VP---PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEECcC------CH---HHHHHHHHHccCCcEEEEE
Confidence 887522 11 4678888999999988765
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.56 Score=37.89 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~ 51 (175)
.-+++|+=||.|.+++-+-..+...|.++|+++.+. +..+.|
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHH
Confidence 458999999999999999666444589999999886 555555
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.077 Score=42.01 Aligned_cols=88 Identities=10% Similarity=0.081 Sum_probs=56.8
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...|++|+=+|+|. |......++..|.+|+.+|.++..+ +.+.. .+. ... ...+. -...|+|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~-~~A~~----~G~----~~~--~~~e~----v~~aDVVI~ 263 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICA-LQAAM----EGY----EVM--TMEEA----VKEGDIFVT 263 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhH-HHHHh----cCC----EEc--cHHHH----HcCCCEEEE
Confidence 35799999999997 8888888887788999999998654 22221 122 011 01011 124698886
Q ss_pred CCcccCcccchHHHHHHHH-HHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSV-LLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~-l~~~l~pgG~~~~~ 117 (175)
... .. .++.. ..+.+++||.++.+
T Consensus 264 atG------~~---~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 264 TTG------NK---DIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CCC------CH---HHHHHHHHhcCCCCcEEEEe
Confidence 422 22 44554 58899999977665
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.038 Score=41.80 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=66.3
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|.=||.|. |..+..+|.-.+.+|+..|.|..-+ .++...... ++... .+-...+...-...|++|..-
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl-~~ldd~f~~-----rv~~~-~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRL-RQLDDLFGG-----RVHTL-YSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHH-hhhhHhhCc-----eeEEE-EcCHHHHHHHhhhccEEEEEE
Confidence 446788899996 9999999888899999999998776 444322211 11111 111111222234789999876
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ +.-..+.-+.+++...+|||+.++=+
T Consensus 240 LI---pgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 240 LI---PGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred Ee---cCCCCceehhHHHHHhcCCCcEEEEE
Confidence 66 44445668889999999999865544
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.094 Score=40.56 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=58.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 81 (175)
..++.+||=.|||. |..+..+++..+.+ |+++|.++... +.+++. +....+.....++.+.. .. ....+|+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKL-EWAREF----GATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 34688999899875 88888888888875 99999988765 443321 11000000000110000 11 1235898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-.-. .+ ..++...+.++++|++++.
T Consensus 249 vid~~g------~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVG------RP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCC------CH---HHHHHHHHHhccCCEEEEE
Confidence 875321 12 4667788899999988876
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.056 Score=41.93 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=30.8
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
+.++|+|+|.|.++..++-..+..|.++|-|....
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~ 189 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLV 189 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHH
Confidence 57999999999999999877788999999997553
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.014 Score=39.76 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=57.2
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+++.+=+|+..=-.=....+.++.+|..++.++--+++..+..... +.. .+.........++||++.+..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ss------i~p--~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSS------ILP--VDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccccc------ccH--HHHHHHHHHhhccchhhheechh
Confidence 5667777776433323333555677999998763332221111100 000 01011111224579998887776
Q ss_pred cCcc--------cchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 89 LYVK--------QYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 89 ~~~~--------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.|.. +..--.+.+.++.++|||||.+++..+--
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 3221 11123577888999999999999985543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.82 Score=31.94 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=69.5
Q ss_pred EEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh--------hCCCCCC---cceeeccCCCCCCCCCCC
Q 030558 12 CIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNST--------TNGITPA---LPHIKHSWGDAFPIPNPD 78 (175)
Q Consensus 12 vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~ 78 (175)
|.=+|+|+ |. ++..++.. |.+|+.+|.+++.++ ...+.+. ....... .....+....++.... .
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALE-RARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHH-HHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHH-hhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 44578876 43 33344444 999999999998864 2222211 1111100 0000111222333222 5
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CC-----------CCCCC---CceEeeeecc
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GT-----------EGLPW---PAFLMSWRRR 142 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~-----------~~~~~---~~~~~~~~~~ 142 (175)
.|+|+=+-. ++.+--+.+++++-+.+.|+..+...+....-.. .. ++.+. +..-......
T Consensus 79 adlViEai~----E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~ 154 (180)
T PF02737_consen 79 ADLVIEAIP----EDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPK 154 (180)
T ss_dssp ESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TT
T ss_pred hheehhhcc----ccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCC
Confidence 688886532 5556667999999999999875555533322111 11 11111 1111112222
Q ss_pred CCCcchhHHHHHHHHcCCeeEEecc
Q 030558 143 IGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
..........+++++.|.....+.+
T Consensus 155 T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 155 TSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3333346777778888887766643
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.022 Score=43.52 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=70.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHH------HHHHHHHhhCCCCCCc-ceeeccCCCCCCC-CCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIE------DNIAYNSTTNGITPAL-PHIKHSWGDAFPI-PNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 77 (175)
..+|+-|+|==-|||++....|.. |..|+|+||+-.++. ++++.|....+...+. ..+..+.. ..+. ...
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~s-n~~~rsn~ 283 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFS-NPPLRSNL 283 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeeccc-Ccchhhcc
Confidence 456888999999999998888664 999999999998764 2345555555542211 11112211 1122 233
Q ss_pred CccEEEeCCccc------------------------Ccccch------HHHHHHHHHHhhcCCCCceeeccc
Q 030558 78 DWDLILASDILL------------------------YVKQYS------NLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 78 ~fD~i~~~~~l~------------------------~~~~~~------~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.||.|++-...- |.+... -...+++-..+.|..||++++-.+
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 799998842210 111111 134667777889999999998855
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.02 Score=44.89 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=44.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT 58 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~ 58 (175)
.+|..|.|+-||.|-+++.+++. ++.|++-|.+++++ ++++.++..|...
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesi-k~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESI-KWLKANIKLNKVD 297 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHH-HHHHHhccccccc
Confidence 35788999999999999999887 79999999999998 9999888887663
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.17 Score=39.34 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=57.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i 82 (175)
..++.+||=.|+|. |..+..+++..+. +|+++|.++..+ +.++.. +....+.....++.+.. ....+.+|+|
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKL-ALAREL----GATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHHc----CCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 44678888899875 8888888888787 699999988765 443321 11000010000010000 1112258888
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.-. .+ ..++...+.++++|+++..
T Consensus 264 id~~G------~~---~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 264 FEMAG------SV---PALETAYEITRRGGTTVTA 289 (371)
T ss_pred EECCC------Ch---HHHHHHHHHHhcCCEEEEE
Confidence 86321 11 5667788899999988765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.39 Score=36.92 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.-+++||=||.|.+++-+...+..-+.++|+++..+ +..+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCC
Confidence 457999999999999999776333489999999887 55554443
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.14 Score=39.62 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---------CCcEEEEeCChHHH
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEI 44 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---------~~~v~~~D~s~~~l 44 (175)
..-.++|+|.|+|.++..+.+.. ..++..+++|++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 34579999999999997766644 56799999999774
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.26 Score=37.59 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CCCCCCCCCccEEE
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~i~ 83 (175)
++.+||-.|||. |..+..+++..+. .+++++.++... +.++.. +.. ..+..... .......+.+|+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-AVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 688899999875 7788888888787 799999988775 433321 110 01100000 01111123589988
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..... . ..++++.+.|+++|+++..
T Consensus 237 d~~g~------~---~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA------P---AALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 74221 1 4567888999999988764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.28 Score=41.43 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=68.1
Q ss_pred CcEEEeCCCccHHHHHHHHhC-------------CCcEEEEeCCh---HHHHHHHH----------HHHhhCCC-CCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAM-------------NLDITTSDYND---QEIEDNIA----------YNSTTNGI-TPALP 62 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-------------~~~v~~~D~s~---~~l~~~~~----------~~~~~~~~-~~~~~ 62 (175)
-+|+|+|=|+|...+...+.. ..++++++..| +.+.+..+ .-...... ...+.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 579999999999887655322 23689999754 22212111 11111000 00011
Q ss_pred ---------eeeccCCCCC---CCCCCCccEEEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeeccccCCCCCCCC
Q 030558 63 ---------HIKHSWGDAF---PIPNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE 128 (175)
Q Consensus 63 ---------~~~~~~~~~~---~~~~~~fD~i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~ 128 (175)
.+.+.++|.. +.....||+++.-.. .....+++ ..+++++.++++|||++.-. .
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F--sP~~np~~W~~~~~~~l~~~~~~~~~~~t~--t-------- 206 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF--APAKNPDMWSPNLFNALARLARPGATLATF--T-------- 206 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC--CCccChhhccHHHHHHHHHHhCCCCEEEEe--e--------
Confidence 1222234322 212245888876311 11112222 48999999999999955531 1
Q ss_pred CCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 129 GLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
......+.+.++||++...
T Consensus 207 ------------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 ------------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ------------------hHHHHHHHHHHcCCeeeec
Confidence 1356677788888887765
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.6 Score=35.83 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=76.7
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHH-------hhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030558 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNS-------TTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
++|-=||+|+ |. ++..++.. |.+|+..|.+++.++ .+...+ ...+.......-.+.....+...-..-|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GLDVVAWDPAPGAEA-ALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 5677888885 33 33445444 999999999997753 222111 1111110000000011111111123468
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc---eEeeeeccCC
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA---FLMSWRRRIG 144 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~~~ 144 (175)
+|+-+-. +..+--..+++++-+.++|+..+...+....... .+++.+... .-.....+..
T Consensus 86 lViEavp----E~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~ 161 (321)
T PRK07066 86 FIQESAP----EREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTA 161 (321)
T ss_pred EEEECCc----CCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence 8887522 4444455888999999999874444433322111 111111111 1111112222
Q ss_pred CcchhHHHHHHHHcCCeeEEe-cceEEEEe
Q 030558 145 KEDETIFFTSCENAGLEVKHL-GSRVYCIK 173 (175)
Q Consensus 145 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~ 173 (175)
.+..+...+++++.|.....+ .+..-+|.
T Consensus 162 ~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~ 191 (321)
T PRK07066 162 PEAVDAAMGIYRALGMRPLHVRKEVPGFIA 191 (321)
T ss_pred HHHHHHHHHHHHHcCCEeEecCCCCccHHH
Confidence 333456677788888776666 45444443
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.22 Score=38.70 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=55.7
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|++||=.|+|. |..+..+++..+.+|++++.++....+.+++ .+.. ..+.....+......+.+|+|+-.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR----LGAD---SFLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh----CCCc---EEEcCCCHHHHHhhcCCCCEEEEC
Confidence 3578888899975 8888889898888999998877543122221 1110 000000000000001247888753
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. .+ ..+++..++++++|+++..
T Consensus 255 ~g------~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 255 VS------AV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CC------CH---HHHHHHHHHhcCCcEEEEe
Confidence 21 11 4677788999999998865
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.76 Score=35.95 Aligned_cols=98 Identities=14% Similarity=0.047 Sum_probs=56.5
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCCC-CCCCCCcc
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~fD 80 (175)
..+|.+||=.|+|. |..+..+++..|.. |+++|.++... +.++.. +....+..... ++.... ....+.+|
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~-~~a~~l----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKA-EKAKTF----GVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHHc----CCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 45688999999875 88888888877874 89999888664 333221 22000000000 000000 01122588
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+|+-.-. .+ ..+....+.+++| |++++.
T Consensus 266 ~vid~~G------~~---~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 266 YSFECVG------DT---GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred EEEECCC------Ch---HHHHHHHHhhccCCCEEEEE
Confidence 8876422 11 4567788888998 988765
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.39 Score=34.90 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCCCCccEEEeCCcccC------------cccchHHHHHHHHHHhhcCCCCceee
Q 030558 74 IPNPDWDLILASDILLY------------VKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~------------~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
++++++|+|+....... ....+-+..++.+++|+|||||.+++
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45667777777644310 00012245889999999999997765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.18 Score=38.26 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=37.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~ 52 (175)
..+++.++|.=+|.|..+..+++.. ...|+|+|.++.++ +.++...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L 64 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERL 64 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHH
Confidence 3467899999999999999998865 46799999999987 5554443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.21 Score=36.29 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=54.7
Q ss_pred CcEEEeCCCccHHHHHHHHhCC-------C---cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC------CCC
Q 030558 10 RRCIELGSGTGALAIFLRKAMN-------L---DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD------AFP 73 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~-------~---~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 73 (175)
+|+.||.+-+|+++..+++... . .++++|+.+=...+ +. -.++.+... .+.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~---------GV----~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIE---------GV----IQLQGDITSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccC---------ce----EEeecccCCHhHHHHHHH
Confidence 6799999999999999988652 1 29999997722100 01 111111111 111
Q ss_pred -CCCCCccEEEeCCcc--cCcccc------hHHHHHHHHHHhhcCCCCceeecc
Q 030558 74 -IPNPDWDLILASDIL--LYVKQY------SNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 74 -~~~~~fD~i~~~~~l--~~~~~~------~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|-...-|+|++-..- .-.++. +-+..+++-...+|+|||.|+.-+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 223467888874321 011111 123455666678999999887663
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.7 Score=35.71 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=58.6
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc----CCCCC-CCCCCC
Q 030558 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS----WGDAF-PIPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~ 78 (175)
..+|.+||=.|+ | .|..+..+|+..|.+|++++.+++.. +.++.. .+.. ..+... +.+.. ....+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~-~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV-DLLKNK---LGFD---EAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHHh---cCCC---EEEECCCcccHHHHHHHHCCCC
Confidence 456888988887 4 69999999998899999999888664 333211 1110 111110 00000 111235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-. . . . ..+....++++++|++++.
T Consensus 229 vD~v~d~--v---G--~---~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDN--V---G--G---DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEEC--C---C--H---HHHHHHHHHhccCCEEEEE
Confidence 8888753 2 1 1 4667888999999998865
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.83 Score=34.65 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=58.3
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+||-.|+| .|..+..+++..+.+|++++.+++.. +.+++. +... .+.....+......+.+|+++.
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~~----g~~~---~~~~~~~~~~~~~~~~~d~vi~ 231 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKR-ELARKL----GADE---VVDSGAELDEQAAAGGADVILV 231 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHh----CCcE---EeccCCcchHHhccCCCCEEEE
Confidence 3457789999997 58888888888888999999988775 444321 1100 0000000000001246898875
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .. ..+....+.++++|+++..
T Consensus 232 ~~~------~~---~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 232 TVV------SG---AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCC------cH---HHHHHHHHhcccCCEEEEE
Confidence 321 11 4667788999999988776
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.7 Score=29.99 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=55.1
Q ss_pred eCCCccHHHHHHHHhC--CCcEEEEeCChH--HHHHH--HHHHHh---hCCCCCCcceeeccC--CC---CCCCCCCCcc
Q 030558 15 LGSGTGALAIFLRKAM--NLDITTSDYNDQ--EIEDN--IAYNST---TNGITPALPHIKHSW--GD---AFPIPNPDWD 80 (175)
Q Consensus 15 lGcG~G~~~~~l~~~~--~~~v~~~D~s~~--~l~~~--~~~~~~---~~~~~~~~~~~~~~~--~~---~~~~~~~~fD 80 (175)
+|=|.=++++.+++.. +.+++|+-.+.. ..+++ +..+++ ..+. .+.+.+ .. ........||
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~-----~V~~~VDat~l~~~~~~~~~~FD 77 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGV-----TVLHGVDATKLHKHFRLKNQRFD 77 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCC-----ccccCCCCCcccccccccCCcCC
Confidence 5666667777887765 346777766553 22211 112222 2222 111222 11 1223456899
Q ss_pred EEEeCCcccCcc---c-------chHHHHHHHHHHhhcCCCCceeecccc
Q 030558 81 LILASDILLYVK---Q-------YSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 ~i~~~~~l~~~~---~-------~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.|+.+..-.-.. . ..-+..+++...++|+++|.+.++...
T Consensus 78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999986631100 0 123456777788899999999987444
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.99 Score=34.27 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCcc
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD 80 (175)
..++.+||-+|+|. |..+..+++..+.+ |++++.+++.. +.+++. +.. ..+.....+ ......+.+|
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKL-ELAKKL----GAT---ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCe---EEecCCCCCHHHHHHhcCCCCc
Confidence 34678999998763 77778888888887 89999988765 443321 110 011100000 0011234689
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++.... .. ..+.+..++++++|+++..
T Consensus 229 ~v~~~~~------~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG------VP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC------Ch---HHHHHHHHHHhcCCEEEEE
Confidence 9986411 11 5677788999999988765
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.4 Score=32.43 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=57.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.++|=.|+|. |..+..+++..+.+ |++++.+++.. +.+++. +.. ..+ ..... .......+|+|+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~-~~~~~~----g~~---~~~-~~~~~-~~~~~~~~d~vl 164 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR-ELAEAL----GPA---DPV-AADTA-DEIGGRGADVVI 164 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH-HHHHHc----CCC---ccc-cccch-hhhcCCCCCEEE
Confidence 34678888889875 77778888888888 99999988775 333321 110 000 00000 011234689888
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..-. .. ..+.+..++++++|+++..
T Consensus 165 ~~~~------~~---~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 165 EASG------SP---SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EccC------Ch---HHHHHHHHHhcCCcEEEEE
Confidence 6321 11 4667788899999988765
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.9 Score=31.44 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=51.4
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh----------CCC-CC-C----cceeeccCCCC
Q 030558 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT----------NGI-TP-A----LPHIKHSWGDA 71 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~----------~~~-~~-~----~~~~~~~~~~~ 71 (175)
++|.=||+|. |. ++..+++. |.+|+.+|.+++.++ .+...... .+. .. . ...+ ....+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~-~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i--~~~~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEILK-NAMELIESGPYGLRNLVEKGKMSEDEAKAIMARI--RTSTS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHHH-HHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCc--EeeCC
Confidence 4577789886 43 34445454 789999999998873 32221111 011 00 0 0000 01111
Q ss_pred CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
.. .-...|+|+.+-. ++.+....+++++.+.++|+..+.
T Consensus 80 ~~-~~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 80 YE-SLSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH-HhCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 1134688887522 333335688888888888886544
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.1 Score=34.49 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
..++.+||=.|+|. |..+..+++..+.+|+++|.++..+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~ 203 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKL 203 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH
Confidence 44688999999976 8888888888888999999998775
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.24 Score=35.55 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=30.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHh
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.+-++-|-.||.|.+.-.+.-..+ ..|++.|++++++ +.+++|..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhh
Confidence 456789999999998866544322 3599999999998 66665543
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.42 Score=37.35 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=58.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-----CCCCC-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-----WGDAF-PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~ 76 (175)
...+|++||=+|+|. |..+..+++..|. +|+++|.+++.+ +.+++. +.. ..+... +.+.. ....
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKF-EKGKEM----GIT---DFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHH-HHHHHc----CCc---EEEecccccchHHHHHHHHhC
Confidence 345688999999975 8888888888887 699999988765 443321 110 011100 00000 1112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-... .+ ..+....+.++++ |++++.
T Consensus 267 ~g~dvvid~~G------~~---~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 267 GGVDYSFECAG------NV---EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCCEEEECCC------Ch---HHHHHHHHhhhcCCCEEEEE
Confidence 25898876422 11 5667777888886 887665
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.3 Score=33.56 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=54.6
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+||=.|||. |..+..+++..+.+|++++.++... +.++. .+. ... +.. .....+.+|+++..
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~-~~~~~----~g~----~~~-~~~---~~~~~~~vD~vi~~ 232 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQ-ELARE----LGA----DWA-GDS---DDLPPEPLDAAIIF 232 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHH-HHHHH----hCC----cEE-ecc---CccCCCcccEEEEc
Confidence 4566777778764 6666778888799999998887654 44322 111 110 110 01123458887753
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- . ..++++.+.++++|+++..
T Consensus 233 ~~~------~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 233 APV------G---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred CCc------H---HHHHHHHHHhhcCCEEEEE
Confidence 221 1 5678899999999998865
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.4 Score=33.79 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=56.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCcc-E
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWD-L 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD-~ 81 (175)
..++.+||=.|+|+ |..+..+++..+.+ |+++|.+++.. +.++. . +....+............ .....+| +
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKL-ALAKS-L---GAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH-c---CCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 34678888889875 88888888888887 79999988765 33322 1 110000000000000000 1123566 5
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-. . . .+ ..+.+..+.++++|++++.
T Consensus 233 v~d~--~---G-~~---~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILET--A---G-VP---QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEEC--C---C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 5432 1 1 12 5778888999999988876
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.18 Score=38.30 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=52.1
Q ss_pred EEEeCCCccHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-----CCCCC-CCCCccEEEe
Q 030558 12 CIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-----DAFPI-PNPDWDLILA 84 (175)
Q Consensus 12 vLDlGcG~G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~fD~i~~ 84 (175)
=+|||.|+..+- +.=+...+....++|+++..+ ..++.|...++....+..+..... +.... .+..||.+++
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 378877764332 222223366789999999776 888899999999877777665432 22222 2447999999
Q ss_pred CCcccC
Q 030558 85 SDILLY 90 (175)
Q Consensus 85 ~~~l~~ 90 (175)
+..+|.
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 988743
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.47 Score=37.59 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=55.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...|++|+=+|+|. |......++..|.+|+++|.++....+. . ..+. ... ...+. -...|+|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~----~~G~----~v~--~leea----l~~aDVVIt 256 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-A----MDGF----RVM--TMEEA----AKIGDIFIT 256 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-H----hcCC----EeC--CHHHH----HhcCCEEEE
Confidence 35799999999996 8888888788899999999988542111 1 1122 000 00011 124588876
Q ss_pred CCcccCcccchHHHHHHH-HHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLS-VLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~-~l~~~l~pgG~~~~~ 117 (175)
... .. .++. +....+|+|+.++.+
T Consensus 257 aTG------~~---~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 257 ATG------NK---DVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CCC------CH---HHHHHHHHhcCCCCcEEEEE
Confidence 321 22 4454 478889999877665
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.46 Score=37.89 Aligned_cols=87 Identities=9% Similarity=0.097 Sum_probs=54.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
+.|++|+=+|+|. |......++..|.+|+.+|.++....+... .+. ... ...+. ....|+|+..
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----~G~----~v~--~l~ea----l~~aDVVI~a 274 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----DGF----RVM--TMEEA----AELGDIFVTA 274 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----cCC----Eec--CHHHH----HhCCCEEEEC
Confidence 4789999999996 777777777778899999998854312211 122 000 01111 1257988764
Q ss_pred CcccCcccchHHHHHHH-HHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLS-VLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~-~l~~~l~pgG~~~~~ 117 (175)
.. .. .++. +....+|+|+.++..
T Consensus 275 TG------~~---~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 275 TG------NK---DVITAEHMEAMKDGAILANI 298 (425)
T ss_pred CC------CH---HHHHHHHHhcCCCCCEEEEc
Confidence 21 22 4454 678889999866655
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.21 Score=39.13 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CCCCCCCCCccEEEe
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAFPIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~i~~ 84 (175)
++++|+=+|+|. |..+...++..|.+|+.+|.++..+ +.+.... +. .+..... +.+...-..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~-~~l~~~~---g~-----~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL-RQLDAEF---GG-----RIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH-HHHHHhc---Cc-----eeEeccCCHHHHHHHHccCCEEEE
Confidence 567799999984 8888887787788999999988665 3322211 11 0100100 011111236799997
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-.+.... .+. -+-++..+.++|++.++-.
T Consensus 237 a~~~~g~~-~p~--lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 237 AVLIPGAK-APK--LVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccccCCCC-CCc--CcCHHHHhcCCCCCEEEEE
Confidence 54321111 111 1236666778999866654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.48 Score=36.39 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=59.6
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCC-CCccE
Q 030558 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPN-PDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~fD~ 81 (175)
..+|.+||=.|+ |.|.+++.+|+..|..++++--+++.. +.++...... .+.....++.+.. .... ..+|+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~-~~~~~lGAd~----vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKL-ELLKELGADH----VINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHH-HHHHhcCCCE----EEcCCcccHHHHHHHHcCCCCceE
Confidence 345888998884 569999999999876777777777554 3333222111 1111111122211 1222 36999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-.--- ..+.+..+.|+++|+++..
T Consensus 215 v~D~vG~----------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 215 VLDTVGG----------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred EEECCCH----------HHHHHHHHHhccCCEEEEE
Confidence 9875332 6677788899999988886
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.47 Score=36.02 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=57.4
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec-cCCCCC-CCCCCCccE
Q 030558 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~fD~ 81 (175)
..+|.+||=.|+ |.|..+..+++..|.+|++++.+++.. +.++. .+....+..... .+.+.. ....+.+|+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~-~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV-AYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEE
Confidence 346788888883 468888999998899999999888664 44332 122000000000 000000 111236888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-. . .. ..+....++++++|+++..
T Consensus 211 v~d~--~---G~-----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 211 YFDN--V---GG-----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEC--C---CH-----HHHHHHHHHhCcCcEEEEe
Confidence 8753 2 11 3457788999999998865
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.55 Score=35.79 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=58.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
..++.+||-.|+|. |..+..+|+..+.+|+++..+++.. +.++.. +....+......+.+.+ . .....+|++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~-~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERL-EFAREL----GADDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHH-HHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 34678899998874 7888888898899999998877664 444321 11000010000000111 1 123458999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.... .. ..+.++.+.++++|+++..
T Consensus 232 ld~~g------~~---~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 IDATG------NP---ASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 87421 11 4567788899999987754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.55 Score=35.87 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=55.9
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccE
Q 030558 6 WIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~ 81 (175)
..++.+||-.|+| .|..+..+++..+. .+++++.++... +.+++. +....+......+.+.+ . ...+.+|+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERL-DLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 3457888888876 37777888888785 788998877554 333322 11000010000110100 0 12246898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.... .. ..+++..+.++++|+++..
T Consensus 240 vld~~g------~~---~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVG------FE---ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 886311 11 4677788899999987754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.054 Score=44.51 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=29.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCCh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYND 41 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~ 41 (175)
.++..||||||.+|.+...+++.+ +.-|+|+|+-|
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 356789999999999999888876 55699999966
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.35 Score=36.69 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=33.2
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030558 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
+++||=||.|.+++-+.+.+...+.++|+++... +..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc
Confidence 6899999999999999777434589999999886 66666654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.14 Score=38.99 Aligned_cols=102 Identities=17% Similarity=0.072 Sum_probs=58.4
Q ss_pred CCccccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-CCCCCCCCCCCc
Q 030558 2 HHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-WGDAFPIPNPDW 79 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f 79 (175)
++....+|+++-=+|.| -|.++..+|+.+|.+|+++|-+...=+++++.-.+. .++... -.+......++.
T Consensus 175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd-------~fv~~~~d~d~~~~~~~~~ 247 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD-------VFVDSTEDPDIMKAIMKTT 247 (360)
T ss_pred HHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc-------eeEEecCCHHHHHHHHHhh
Confidence 34455678887777764 799999999999999999999974433444422221 111111 001111112233
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|.++-.-+- . . . ..+..+.+++|++|++++.
T Consensus 248 dg~~~~v~~-~-a-~----~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 248 DGGIDTVSN-L-A-E----HALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred cCcceeeee-c-c-c----cchHHHHHHhhcCCEEEEE
Confidence 433321110 0 1 1 3456688899999999987
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.77 Score=35.93 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+||=.|+|. |..+..+|+..|.+|+++|.+++...+.++. .+.. ..+...-.+......+.+|+|+-.-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 578888889875 8888888898898999999876442122221 1220 0110000000000012478887632
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .+ ..+....+.++++|+++..
T Consensus 251 G------~~---~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 251 S------AE---HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred C------cH---HHHHHHHHhhcCCCEEEEE
Confidence 1 11 4677788899999988876
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.47 Score=35.93 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=57.4
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEE
Q 030558 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i 82 (175)
..+|.+||=.|+ |.|..+..+++..|.+|++++.+++.. +.++. .+....+.....++.+.. ....+.+|+|
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~-~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV-AWLKE----LGFDAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 346788887773 458888889998899999999888654 44432 122000000000110000 1112468988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-. . . . ..++...++++++|+++..
T Consensus 216 ld~--~---g--~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 216 FDN--V---G--G---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEC--C---C--H---HHHHHHHHhhccCCEEEEE
Confidence 853 2 1 1 4567889999999988764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.7 Score=36.03 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=83.2
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHH-------HHHhhCCCCC-C----cceeeccCCCCCCCC
Q 030558 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIA-------YNSTTNGITP-A----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~-------~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 75 (175)
++|-=||+|+ +.++..++.. |.+|+.+|.+++.++...+ +.......+. . ...+.. ..++. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~~~-~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP--TLSYA-G 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE--eCCHH-H
Confidence 4678889987 3344445555 8999999999988642211 1111111110 0 001111 11111 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCce-Eee--e
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAF-LMS--W 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~--~ 139 (175)
-..-|+|+=+ +. ++.+--.++++++-++++|+..+.-.+....-.. -+++.+.+.. +.. .
T Consensus 390 ~~~aDlViEa-v~---E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~ 465 (714)
T TIGR02437 390 FDNVDIVVEA-VV---ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (714)
T ss_pred hcCCCEEEEc-Cc---ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecC
Confidence 2357888875 33 5566667999999999999976555533332111 1121111110 111 1
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030558 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
......+......+++++.|-+...+.+..-+|.+
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~N 500 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVN 500 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHH
Confidence 11222233456677788888887777776665554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.5 Score=32.95 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=50.3
Q ss_pred cEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh-------CC-CCCC-----cceeeccCCCCCCCC
Q 030558 11 RCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT-------NG-ITPA-----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 11 ~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~-------~~-~~~~-----~~~~~~~~~~~~~~~ 75 (175)
+|.=||+|. | .++..+++. +.+|+.+|.+++.+++..+ .... .+ .... ...+ ...++....
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i--~~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQ-EIASIFEQGVARGKLTEAARQAALARL--SYSLDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHhCe--EEeCcHHHh
Confidence 466678875 3 333445444 8899999999988743222 1110 01 1000 0000 011122111
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-..-|+|+.+-. .+......+++++.+.++|+..+.+.
T Consensus 79 ~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 79 VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 234688886522 22223346778888888887655443
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=91.56 E-value=5.2 Score=30.85 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC----CCCC-CCCCCcc
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG----DAFP-IPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~fD 80 (175)
++.+||=.|+|. |..+..+++..+. +|++++.+++.. +.+++ .+....+........ .... .....+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERL-ELARE----FGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 677888888864 7777888888888 899999887653 33321 112000000000000 0001 1123689
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-..- .. ..+.+..+.++++|+++..
T Consensus 252 ~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEASG------HP---AAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEECCC------Ch---HHHHHHHHHhccCCEEEEE
Confidence 8886421 11 4567788999999988765
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.63 Score=35.36 Aligned_cols=110 Identities=24% Similarity=0.243 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---------------------CCcEEEEeCChHH-HHHHHHHHHhhCCCC-------
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM---------------------NLDITTSDYNDQE-IEDNIAYNSTTNGIT------- 58 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---------------------~~~v~~~D~s~~~-l~~~~~~~~~~~~~~------- 58 (175)
+..+||=||.|.|.=-..++... ..+|+++|+.++. +...+...+......
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 35789999999977665555433 0379999999964 224444444433110
Q ss_pred ------CCcceeeccCCCCCCCCC---------CCccEEEeCCccc--CcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 59 ------PALPHIKHSWGDAFPIPN---------PDWDLILASDILL--YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 59 ------~~~~~~~~~~~~~~~~~~---------~~fD~i~~~~~l~--~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...=.+.+...|.+.... .+.++|.....+. +..+...-.+++..+-..++||..+.|+
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 000011111122221111 1344444432221 2233455678888899999999988887
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.1 Score=34.21 Aligned_cols=145 Identities=12% Similarity=0.010 Sum_probs=74.3
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-----CCCCC
Q 030558 4 REWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----FPIPN 76 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 76 (175)
....+|.+|.=+|+|. |.....-++.. +.+++|+|++++-. +.++.-... +-++.. +..+. .+.-+
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf-~~ak~fGaT----e~iNp~--d~~~~i~evi~EmTd 260 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF-EKAKEFGAT----EFINPK--DLKKPIQEVIIEMTD 260 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH-HHHHhcCcc----eecChh--hccccHHHHHHHHhc
Confidence 3456788899999986 66666655544 56799999999886 444432221 111111 11110 01124
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec-cccCCCCC----CCCCCCCCceEeeeeccCCCcchhH
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH-LTKNEQGE----GTEGLPWPAFLMSWRRRIGKEDETI 150 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (175)
+.+|+-+- ++ . .. .+|++.+....+| |.-++. ........ ..+.....+.-..+..+.+.++...
T Consensus 261 gGvDysfE--c~---G-~~---~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~ 331 (375)
T KOG0022|consen 261 GGVDYSFE--CI---G-NV---STMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPK 331 (375)
T ss_pred CCceEEEE--ec---C-CH---HHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhH
Confidence 56666542 11 1 22 6777788888888 766555 22111111 1122221222223344444545556
Q ss_pred HHHHHHHcCCeeEE
Q 030558 151 FFTSCENAGLEVKH 164 (175)
Q Consensus 151 ~~~~~~~~g~~~~~ 164 (175)
+.+...+..|.+..
T Consensus 332 lV~~y~~~~l~ld~ 345 (375)
T KOG0022|consen 332 LVKDYMKKKLNLDE 345 (375)
T ss_pred HHHHHHhCccchhh
Confidence 66665555555443
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.39 Score=35.65 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC------CCcEEEEeCCh
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM------NLDITTSDYND 41 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~------~~~v~~~D~s~ 41 (175)
+...++|+|||.|.++..+++.. ...++.+|-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 45679999999999999998865 34689999965
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.3 Score=34.24 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=54.5
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|.++|=.|+|. |..+..+++..+.++++++.+++......+ . .+.. ..+.....+........+|+++-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~-~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE-H---LGAD---DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-h---cCCc---EEecCCChHHHHHhcCCCcEEEEC
Confidence 3578888888864 888888888888889988887755322222 1 1220 000000000000011247877753
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-. .. ..++...++++++|+++..
T Consensus 252 ~g------~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 252 VP------VF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CC------ch---HHHHHHHHHhccCCEEEEE
Confidence 11 11 4667788899999988775
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=2.4 Score=32.25 Aligned_cols=97 Identities=13% Similarity=0.013 Sum_probs=53.8
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHH--HhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYN--STTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|+=+|+|. |. ++..|++. |.+|+.++-+.+.+ +..+++ ...... .. ...+......+...+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~-~~i~~~~Gl~i~~~-g~--~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRL-AAYQQAGGLTLVEQ-GQ--ASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHH-HHHhhcCCeEEeeC-Cc--ceeeccCCCCcccccccCEEEEE
Confidence 4688899996 55 55666554 78999999987555 443321 111000 00 01111101111123479987764
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-= .. +...+++.+...+.++..++..
T Consensus 78 vK---~~---~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CK---AY---DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CC---HH---hHHHHHHHHHhhCCCCCEEEEE
Confidence 11 12 2347888899999998766555
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.89 Score=34.74 Aligned_cols=94 Identities=9% Similarity=0.111 Sum_probs=54.7
Q ss_pred CcEEEeCC--CccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030558 10 RRCIELGS--GTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGc--G~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
.+||=.|+ |.|..+..+++..|. +|++++.+++.. +.++... +....+.....++.+.. ....+.+|+|+-.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd~vid~ 231 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC-QLLKSEL---GFDAAINYKTDNVAERLRELCPEGVDVYFDN 231 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCceEEEEC
Confidence 78888875 468888889998888 799999888664 3333211 11000000000110000 1112468988853
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .. ..+.+..++++++|+++..
T Consensus 232 --~---g~-----~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 232 --V---GG-----EISDTVISQMNENSHIILC 253 (345)
T ss_pred --C---Cc-----HHHHHHHHHhccCCEEEEE
Confidence 2 11 2346788899999998864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.14 E-value=5.6 Score=30.42 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=56.4
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHH-------HHHHhhCCCCCCcceeeccCCC-CCCC-CCCC
Q 030558 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNI-------AYNSTTNGITPALPHIKHSWGD-AFPI-PNPD 78 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 78 (175)
++|-=||+|+ +..+..+|. .|..|+..|+++++++... .+...............+.... .... .-..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence 4577788887 333444545 4799999999988763221 1112211111100000011101 0010 1235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.|+|+=+-. ++.+--.++++++-.+++|+..|.-.+
T Consensus 83 ~DlVIEAv~----E~levK~~vf~~l~~~~~~~aIlASNT 118 (307)
T COG1250 83 ADLVIEAVV----EDLELKKQVFAELEALAKPDAILASNT 118 (307)
T ss_pred CCEEEEecc----ccHHHHHHHHHHHHhhcCCCcEEeecc
Confidence 688876533 555556799999999999997555553
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.2 Score=34.27 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=57.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 81 (175)
..++++||=.|+|. |..+..+++..+.. |+++|.+++.. +.++. .+....+.....++.... .. ....+|+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRV-ELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 34578888888874 77778888887874 99999988664 33332 111000000000000000 11 1236898
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-... .. ..+.++.+.++++|+++..
T Consensus 239 vld~~g------~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGG------GQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCC------CH---HHHHHHHHHhhcCCEEEEe
Confidence 885321 11 5678889999999988754
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.39 Score=37.74 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.+++++|.++..|.+ .|.+.+...+.++++.+.++|||++++-...
T Consensus 291 ~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 457899999999998 7777899999999999999999999885333
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.2 Score=30.05 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=25.7
Q ss_pred EeCCCcc--HHHHHHH-HhC--CCcEEEEeCChHHHHHHHHHH--HhhCCC
Q 030558 14 ELGSGTG--ALAIFLR-KAM--NLDITTSDYNDQEIEDNIAYN--STTNGI 57 (175)
Q Consensus 14 DlGcG~G--~~~~~l~-~~~--~~~v~~~D~s~~~l~~~~~~~--~~~~~~ 57 (175)
|+|++.| .....+. +.. ...|+++|++|..+ +.++++ ...+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCC
Confidence 8999999 6655543 222 56799999999886 666666 555433
|
; PDB: 2PY6_A. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=90.53 E-value=3.1 Score=31.80 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=57.8
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCC-CCCCCCCccE
Q 030558 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDA-FPIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~fD~ 81 (175)
..+|.+||=.|+ |.|..+..+++..|.+|++++.+++.. +.++... +....+..-. .++.+. .....+.+|+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV-DLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 446788888886 458888889998899999998887654 3333211 1100000000 000000 0111246888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-. . . . ..+.+..++++++|+++..
T Consensus 225 v~d~--~---g--~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 225 YFDN--V---G--G---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEC--C---C--H---HHHHHHHHHhccCcEEEEe
Confidence 8753 2 1 1 5577888999999988865
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.56 Score=30.20 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=26.0
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChH
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
..++|.|+|-|- =..+..++++ |..|+++|+++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~ 47 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK 47 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc
Confidence 346899999886 4445667665 899999999874
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.57 Score=30.72 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
..++|.|+|-|. -..+..|++. |..|+++|+++... . .+. +.+.-+..+.....=...|+|.+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~a--------~-~g~----~~v~DDif~P~l~iY~~a~lIYSi- 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRKA--------P-EGV----NFVVDDIFNPNLEIYEGADLIYSI- 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S-------------ST----TEE---SSS--HHHHTTEEEEEEE-
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccccc--------c-cCc----ceeeecccCCCHHHhcCCcEEEEe-
Confidence 346899999996 5666677665 79999999988521 1 122 233222211100000145777774
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.+++++..+-++.+.+. .-+++.
T Consensus 78 -----RPP~El~~~il~lA~~v~--adlii~ 101 (127)
T PF03686_consen 78 -----RPPPELQPPILELAKKVG--ADLIIR 101 (127)
T ss_dssp -----S--TTSHHHHHHHHHHHT---EEEEE
T ss_pred -----CCChHHhHHHHHHHHHhC--CCEEEE
Confidence 334566677777777655 344554
|
; PDB: 2K4M_A. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.39 E-value=3.2 Score=31.76 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=57.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC---CCCC--CCCCCC
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW---GDAF--PIPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~ 78 (175)
..++.+||=.|+|. |..+..+++..|.+ |++++.++... +.++. . +....+......+ .+.+ ......
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRL-EFAKE-L---GATHTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH-c---CCcEEeccccccchhHHHHHHHHhCCCC
Confidence 34677888888765 77788888888887 99998887654 33322 1 1100001000000 0000 112345
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-...- . ..+++..++++++|+++..
T Consensus 235 ~d~vld~~g~------~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 235 PDVVIECTGA------E---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCEEEECCCC------H---HHHHHHHHHhhcCCEEEEE
Confidence 8999874221 1 3667788999999988764
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.1 Score=33.99 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=54.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+++|+=+|.|. |......++..+.+|+.+|.++... +.++ ..+. ..+.+ +.+...-..+|+|+.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~----~~G~----~~~~~---~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL-ARIT----EMGL----SPFHL---SELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHH----HcCC----eeecH---HHHHHHhCCCCEEEE
Confidence 34689999999985 7766666677789999999998653 3322 1122 11111 111111236899998
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.-.. . -+-+++.+.++|++.++-..
T Consensus 217 t~p~-------~--~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPA-------L--VLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCCh-------h--hhhHHHHHcCCCCcEEEEEc
Confidence 5211 1 23356777889987655443
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=90.34 E-value=4.8 Score=32.94 Aligned_cols=107 Identities=8% Similarity=0.082 Sum_probs=61.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--C---CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---C-CCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM--N---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I-PNPD 78 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ 78 (175)
++..+.|.-||+|.+.....+.. + ..+++.+..+.+. ..+.-+....+... ......+++.+. . ....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~--~t~~~~~~dtl~~~d~~~~~~ 293 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDY--ANFNIINADTLTTKEWENENG 293 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCc--cccCcccCCcCCCcccccccc
Confidence 45789999999999886544322 1 3489999999886 55555544433311 111111222221 1 2346
Q ss_pred ccEEEeCCcccC-cc---------------------cchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLY-VK---------------------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~-~~---------------------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|+++..+-. |. ....-..++......|++||+-.++
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 888887653211 10 0112346777788889999876555
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.4 Score=34.20 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=57.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i 82 (175)
..++++||=.|+|. |..+..+++..|. .|+++|.++... +.++.. +....+.....+..+. .......+|+|
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~-~~~~~~----g~~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRL-ELAKEL----GATHVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHc----CCcEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 34578888888865 8888888888888 499999988664 333221 1100000000000000 01113468988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.-. .+ ..+.++.++++++|+++..
T Consensus 259 ld~~g------~~---~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 259 LDTTG------VP---AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred EECCC------Cc---HHHHHHHHHhccCCEEEEe
Confidence 86421 11 4567888899999988765
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.53 Score=35.40 Aligned_cols=44 Identities=20% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCCCCccEEEeCCcccCcc-------------cchHHHHHHHHHHhhcCCCCceeec
Q 030558 74 IPNPDWDLILASDILLYVK-------------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~-------------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++++||+|++...++-.. ...-+...+.++.++|||||.+++.
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3456888888865532100 0112357899999999999999886
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.8 Score=31.76 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=56.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCCC-CCCCCCcc
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~fD 80 (175)
..+|.+||=.|+|. |..+..+++..+. +|+++|.++... +.++.. +....+..... .+.+.. ....+.+|
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~-~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g~d 256 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKF-EKAKEF----GATDFINPKDSDKPVSEVIREMTGGGVD 256 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHc----CCCcEeccccccchHHHHHHHHhCCCCC
Confidence 45678888889874 7777888888887 699999988664 443321 11000010000 000000 01123588
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+|+-.-. .. ..+.+..+.++++ |+++..
T Consensus 257 ~vid~~g------~~---~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 257 YSFECTG------NA---DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred EEEECCC------Ch---HHHHHHHHhcccCCCEEEEE
Confidence 8885321 11 5667788889885 888765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.5 Score=30.67 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=33.3
Q ss_pred CCCCCccEEEeCCcccCccc---------chHHHHHHHHHHhhcCCCCceeeccc
Q 030558 74 IPNPDWDLILASDILLYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~---------~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
...+.+|+|+++.+++.... .+++.+++..+..+|+|+..++..+.
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt 100 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTA 100 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecC
Confidence 34568999999999853332 23577888888888889887777643
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.8 Score=36.98 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=54.8
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
+.|++|+=+|+|. |......++.+|.+|+++|.++....+... .+. ... ...+. -...|+|+..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----~G~----~vv--~leEa----l~~ADVVI~t 316 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----EGY----QVL--TLEDV----VSEADIFVTT 316 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----cCC----eec--cHHHH----HhhCCEEEEC
Confidence 5789999999996 877777777778999999998854212211 112 000 01011 1246888863
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-- .. -+..+.++.+|+|+.++-+
T Consensus 317 TGt------~~--vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 317 TGN------KD--IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred CCC------cc--chHHHHHhcCCCCCEEEEc
Confidence 221 11 2337788899999876665
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.4 Score=33.90 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=57.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 81 (175)
..++.+||=.|+|. |..+..+++..+. .|++++.++... +.++.. +....+.....++.+.+ .. ..+.+|+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~-~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARR-ELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 34577888888764 7777888888788 799999888764 443321 22000010000110001 11 1235899
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-...- . ..++...+.++++|+++..
T Consensus 245 vid~~g~------~---~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 245 SFDCAGV------Q---ATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred EEECCCC------H---HHHHHHHHhccCCCEEEEE
Confidence 8864221 1 4667888899999987765
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=89.55 E-value=2.2 Score=33.61 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=59.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChH---HHH---HHHHHHHhhCCCCCCcceeeccCCCCCC-----
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQ---EIE---DNIAYNSTTNGITPALPHIKHSWGDAFP----- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~---~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 73 (175)
..+++..-|+|+|.|.+....+...++. -+|+++.+. +.+ +..++....-+. ....+....++..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk--~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK--KPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC--CcCceeecccccCCHHHHH
Confidence 4567889999999999998776654433 455555442 211 112222222222 11222222222221
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.....-++|+++++. .+. ++..-+.+++.-+++|.+++-.
T Consensus 268 eI~~eatvi~vNN~~---Fdp-~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 268 EIQTEATVIFVNNVA---FDP-ELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHhhcceEEEEeccc---CCH-HHHHhhHHHHhhCCCcceEecc
Confidence 123356899999887 322 3334455999999998877665
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=6.2 Score=28.22 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=25.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh---CCCcEEEEeCChHHH
Q 030558 7 IERRRCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~~~l 44 (175)
+++++||=.|++ |.++..+++. .|.+|++++-+++..
T Consensus 3 ~~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~ 42 (238)
T PRK05786 3 LKGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKL 42 (238)
T ss_pred cCCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 357889989875 4344333332 388999999988665
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=89.28 E-value=4 Score=35.00 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=82.1
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHH-------HHHHhhCCCCCC-----cceeeccCCCCCCCC
Q 030558 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNI-------AYNSTTNGITPA-----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ ...+..++.. |.+|+..|.+++.++... .+.......... ...+. ...++. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~--~~~~~~-~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR--PTLDYA-G 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE--EeCCHH-H
Confidence 5688899997 3334445555 899999999998864221 111221111100 01111 111211 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc-eEeee--
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA-FLMSW-- 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~-- 139 (175)
-..-|+|+=+ +. ++.+--+++++++-+.++|+..+...+....-.. .+++.+.+. -+..-
T Consensus 390 ~~~aDlViEa-v~---E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~ 465 (715)
T PRK11730 390 FERVDVVVEA-VV---ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (715)
T ss_pred hcCCCEEEec-cc---CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeC
Confidence 2356888865 22 5556667999999999999975555433332111 112111111 01111
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030558 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
.............++++..|.....+.+..-+|.+
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~n 500 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVN 500 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHH
Confidence 11122223456677788888887777766555543
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.11 E-value=1.7 Score=33.12 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=56.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+||=.|+|. |..+..+++..|.+|++++.+++.. +.++.. +....+.....++...... .+.+|+++.
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~-~~~~~~----g~~~~i~~~~~~~~~~~~~-~~~~d~vi~ 234 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKA-DLARKL----GAHHYIDTSKEDVAEALQE-LGGAKLILA 234 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHc----CCcEEecCCCccHHHHHHh-cCCCCEEEE
Confidence 34577888888764 7777888888898999999987664 443321 1100000000000000000 124788875
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .. ..+....+.++++|+++..
T Consensus 235 ~~g------~~---~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 235 TAP------NA---KAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCC------ch---HHHHHHHHHcccCCEEEEE
Confidence 311 11 5677788899999988765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=6 Score=31.20 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=60.8
Q ss_pred cEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC
Q 030558 11 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 90 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (175)
+|+=++=.-|.++..++.. +.. ...|. ...+...+.|.+.+++... .+ .+.+..+...+.+|+|+.- .
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~~-~~~ds--~~~~~~~~~n~~~n~~~~~--~~--~~~~~~~~~~~~~d~vl~~----~ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KPY-SIGDS--YISELATRENLRLNGIDES--SV--KFLDSTADYPQQPGVVLIK----V 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CCC-eeehH--HHHHHHHHHHHHHcCCCcc--cc--eeecccccccCCCCEEEEE----e
Confidence 7899999999999999753 322 22232 2333666778888776221 11 1112233334568998873 3
Q ss_pred cccchHHHHHHHHHHhhcCCCCceeec
Q 030558 91 VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 91 ~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-....+...+..+.+++.||+.+++.
T Consensus 115 PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 115 PKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 345566778888999999999987654
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.97 E-value=4.7 Score=30.40 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=56.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+||=.|+|. |..+..+++..|.+|++++.+++.. +.++. .+. ... ....+. ...+.+|+++-
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~-~~~~~----~g~----~~~-~~~~~~--~~~~~~d~vid 220 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKL-ALARR----LGV----ETV-LPDEAE--SEGGGFDVVVE 220 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHH----cCC----cEE-eCcccc--ccCCCCCEEEE
Confidence 34577888888764 7777778888898999999888765 44443 122 111 111111 23346898886
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. . .. ..++...++++++|+++..
T Consensus 221 ~~-----g-~~---~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 221 AT-----G-SP---SGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CC-----C-Ch---HHHHHHHHHhhcCCEEEEE
Confidence 31 1 11 4567788889999988863
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.4 Score=34.90 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=82.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHH-------HHHhhCCCCC-C----cceeeccCCCCCCCC
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIA-------YNSTTNGITP-A----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~-------~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 75 (175)
++|-=||+|+ | .++..++.. |.+|+..|.+++.++...+ +.......+. . ...+. ...++. .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~--~~~~~~-~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT--PTLDYS-G 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE--EeCCHH-H
Confidence 4678889986 3 334445554 8999999999988743211 1111111110 0 00111 111111 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCce-Eee--e
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAF-LMS--W 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~--~ 139 (175)
-..-|+|+=+ +. ++.+--.++++++-++++|+..+...+....-.. -+++.+.... +.. .
T Consensus 412 ~~~aDlViEA-v~---E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~ 487 (737)
T TIGR02441 412 FKNADMVIEA-VF---EDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIIT 487 (737)
T ss_pred hccCCeehhh-cc---ccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeC
Confidence 2356777764 33 5555667999999999999986655543332111 1222221110 111 1
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030558 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
....+.+.......++++.|-....+.+..-+|.+
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~N 522 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTT 522 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHH
Confidence 11222223456667778888887777776655544
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=88.27 E-value=2 Score=32.39 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=54.7
Q ss_pred CCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 9 RRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+.+||=.|+ | .|..+..+|+..|.+|++++.+++.. +.++.. +....+.................+|+|+-.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~d~vld~- 220 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAA-DYLKKL----GAKEVIPREELQEESIKPLEKQRWAGAVDP- 220 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHH-HHHHHc----CCCEEEcchhHHHHHHHhhccCCcCEEEEC-
Confidence 567888887 4 48777888888899999999888664 443321 110000000000000001123458887743
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .. ..+.+..++++++|+++..
T Consensus 221 -~---g~-----~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 221 -V---GG-----KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred -C---cH-----HHHHHHHHHhhcCCEEEEE
Confidence 2 11 4567788899999988776
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=88.22 E-value=2.5 Score=32.28 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=56.6
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEE
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~ 83 (175)
.++.+||-.|+|. |..+..+++..+.+ |++++-++... +.++.. +....+............. ....+|+++
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~-~~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vl 232 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKL-AVAREL----GADDTINPKEEDVEKVRELTEGRGADLVI 232 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc----CCCEEecCccccHHHHHHHhCCCCCCEEE
Confidence 4677899998865 77778888888887 99998887664 443321 1100000000000000111 123589988
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- . .. ..+..+.++++++|+++..
T Consensus 233 d~~-----g-~~---~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 233 EAA-----G-SP---ATIEQALALARPGGKVVLV 257 (343)
T ss_pred ECC-----C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 641 1 11 4667788999999987765
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.96 E-value=2.2 Score=33.62 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=56.8
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----C-C-CCCC
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----F-P-IPNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~ 77 (175)
..++++||=.|+|. |..+..+++..+.+ |+++|.++..+ +.+++. +. ..+....... . . ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~-~~a~~~----Ga----~~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL-AQARSF----GC----ETVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHc----CC----eEEecCCcccHHHHHHHHcCCC
Confidence 34567776688875 88888888877776 56678877554 333321 11 1111000000 0 0 1123
Q ss_pred CccEEEeCCccc-----CcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILL-----YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~-----~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+++-.---. +.....+...++++..+.++++|++++.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 589888643210 0000011124788899999999999886
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.85 E-value=4.4 Score=30.34 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=45.8
Q ss_pred cEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 11 RCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+|.=||+|. |.++..+++. +.+|+++|.++..+++.... +. +... . .... .-...|+|+.+-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~-----g~---~~~~---~-~~~~-~~~~aDlVilavp- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER-----GL---VDEA---S-TDLS-LLKDCDLVILALP- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC-----CC---cccc---c-CCHh-HhcCCCEEEEcCC-
Confidence 355578775 4555666554 77899999998776332221 11 0000 0 1111 1235688887633
Q ss_pred cCcccchHHHHHHHHHHhhcCCCC
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
.....++++++...++|+.
T Consensus 67 -----~~~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 67 -----IGLLLPPSEQLIPALPPEA 85 (279)
T ss_pred -----HHHHHHHHHHHHHhCCCCc
Confidence 2234467788888887764
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.4 Score=35.71 Aligned_cols=88 Identities=8% Similarity=0.054 Sum_probs=53.7
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.|++|+=+|+|. |......++.+|.+|+.+|.++....+... .+. ... . +...-...|+|+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----~G~----~~~--~----leell~~ADIVI~ 315 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----EGY----QVV--T----LEDVVETADIFVT 315 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----cCc----eec--c----HHHHHhcCCEEEE
Confidence 46799999999996 776666667778899999988754211111 122 011 0 1111235798887
Q ss_pred CCcccCcccchHHHHHH-HHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~~ 117 (175)
+.. .. .++ .+....+|||+.++-+
T Consensus 316 atG------t~---~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 316 ATG------NK---DIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CCC------cc---cccCHHHHhccCCCcEEEEc
Confidence 522 11 334 4678889999866555
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=87.75 E-value=4.5 Score=34.65 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=81.4
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHH---HHH----HhhCCCCC-----CcceeeccCCCCCCCC
Q 030558 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNI---AYN----STTNGITP-----ALPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~---~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ ...+..++...|.+|+..|.+++.++... .+. ........ ....+. ...++. .
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~~~~-~ 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALIS--GTTDYR-G 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEE--EeCChH-H
Confidence 5688899987 33444455344899999999998763221 111 11111110 001111 111221 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc---eEeee
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA---FLMSW 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~ 139 (175)
-..-|+|+=+ +. ++.+--+.+++++-+.++|+..+.-.+....-.. .+++.+... .-...
T Consensus 387 ~~~aDlViEa-v~---E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~ 462 (708)
T PRK11154 387 FKHADVVIEA-VF---EDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIP 462 (708)
T ss_pred hccCCEEeec-cc---ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEEC
Confidence 2356888765 22 5555667999999999999976655533332111 111111110 11111
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEe
Q 030558 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIK 173 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 173 (175)
..............++++.|.....+.+...+|.
T Consensus 463 g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGfi~ 496 (708)
T PRK11154 463 HAKTSAETIATTVALAKKQGKTPIVVRDGAGFYV 496 (708)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeccCcHHH
Confidence 1222223345666778888887777766554443
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.24 E-value=2.9 Score=32.06 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=55.6
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
++.+||=.|+|. |..+..+|+..|. +|++++.++... +.++.. +....+......+.+.. ....+.+|+++.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vid 249 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKL-EAAKAA----GADVVVNGSDPDAAKRIIKAAGGGVDAVID 249 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHh----CCcEEecCCCccHHHHHHHHhCCCCcEEEE
Confidence 578888888874 7777888888887 699999887664 343221 11000000000000000 111225888885
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .. ..+.+..+.|+++|+++..
T Consensus 250 ~~g------~~---~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 250 FVN------NS---ATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCC------CH---HHHHHHHHHhhcCCeEEEE
Confidence 321 11 5678889999999988764
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.14 E-value=2.6 Score=32.68 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=55.2
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030558 7 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
.++.+||=.|+| .|..+..+++..+.+ |++++.++... +.++. . +....+......+.+.+ . .....+|+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~-~~~~~-~---g~~~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKL-AKAKE-L---GATHTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-h---CCceEecCCcccHHHHHHHHhCCCCCCEE
Confidence 456777767775 477777788887888 99998887664 44332 1 11000010000110000 0 123468998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.. + .. . ..+++..++++++|+++..
T Consensus 261 ld~--v---g~-~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 261 VEA--L---GK-P---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEe--C---CC-H---HHHHHHHHHHhcCCEEEEE
Confidence 853 2 11 1 2567788999999988765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.6 Score=29.29 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=56.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---C--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM---N--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 73 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 73 (175)
++..|+|+|+-.|..++.+|... | .+|.++|++-..+...+.+ .+.+.+.-++...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCeEEEeCCCCCHHHHHHHHH
Confidence 56789999998888777666532 5 6799999977553222111 1233333332221
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+.--+.++-++- ++.+...+.|+-+.++|.-|..+++.
T Consensus 139 ~~~~y~kIfvilDsd---Hs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 139 LKNEYPKIFVILDSD---HSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred HhcCCCcEEEEecCC---chHHHHHHHHHHhhhHhhcCceEEEe
Confidence 112222444445554 22334457777778888888877765
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=86.94 E-value=6.9 Score=29.09 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=79.1
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC--CCCcceeeccCC----CCC---CCCCCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHSWG----DAF---PIPNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~---~~~~~~fD 80 (175)
..|+.||||-=.-...+... ..+.-+|++...+.+.-++.+...+. ..+...+..+.. +.+ .+..+..-
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 46999999976666555322 23444555443332333333333221 123333433332 111 12233455
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC------CCCCCCCCceEeeeeccCCCcchhHHHHH
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAFLMSWRRRIGKEDETIFFTS 154 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (175)
++++-.+++|.. .+....+++.+.+...||+.+++-........ ..+...... .....+....+..+..+.
T Consensus 161 l~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 161 AWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARG--VDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhc--ccccccccCCChhhHHHH
Confidence 777777776655 66788999999988889998887633321110 000000000 001111112235788899
Q ss_pred HHHcCCeeEEe
Q 030558 155 CENAGLEVKHL 165 (175)
Q Consensus 155 ~~~~g~~~~~~ 165 (175)
+.+.|+++...
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.79 E-value=4.5 Score=30.92 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEe
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~ 84 (175)
++.+||=.|+|. |..+..+++..+. +|++++-++... ..++.. +....+.....++..... ...+.+|+|+.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRL-ELAKKM----GADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 567777778764 7777888888787 688887666443 222211 110000000000000001 12346898886
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-. .. ..+.++.++|+++|+++..
T Consensus 238 ~~g------~~---~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 238 MSG------NP---KAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCC------CH---HHHHHHHHHhccCCEEEEE
Confidence 421 11 4567788899999987764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.76 E-value=7.3 Score=29.22 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=49.5
Q ss_pred cEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-Ccc-eeeccCCCCCCCCCCCccEEEeCC
Q 030558 11 RCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALP-HIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 11 ~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+|+=+|+|. |. ++..+++. +.+|+.+|.+++.+ +.++++ +... .-. .......+.... ...+|+|+..-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARRGAHL-DALNEN----GLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECChHHH-HHHHHc----CCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 467788876 43 33445444 77899999977665 333322 2200 000 000001111111 25789887752
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-- . +...+++.+...+.++..++..
T Consensus 75 k~---~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 75 KA---Y---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cc---c---cHHHHHHHHhhhcCCCCEEEEe
Confidence 22 1 3347888888888777655554
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.70 E-value=4.5 Score=31.38 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCC-CCCCCCCcc
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDA-FPIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~fD 80 (175)
..++.+||=.|+|. |..+..+++..+.. |++++.++... +.+.+ . +....+..... +.... .....+.+|
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKF-EKAKQ-L---GATECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-h---CCCeecccccccchHHHHHHHHhCCCCc
Confidence 44577888788864 77777788887875 88999877664 44332 1 11111111000 00000 011124589
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcC-CCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYK-PKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~-pgG~~~~~ 117 (175)
+|+-... .. ..+....+.++ ++|+++..
T Consensus 256 ~vid~~g------~~---~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 256 YAFEVIG------SA---DTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EEEECCC------CH---HHHHHHHHHhccCCCEEEEE
Confidence 8886321 11 56777888899 99988865
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.26 E-value=3.7 Score=31.09 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=51.2
Q ss_pred CCCcEEEe--CCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030558 8 ERRRCIEL--GSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDl--GcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
++.+++=+ |+| .|..+..+++..+.+|++++.++... +.++. .+....+.....++.+.. . .....+|++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~-~~~~~----~g~~~~i~~~~~~~~~~v~~~~~~~~~d~v 216 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQV-DLLKK----IGAEYVLNSSDPDFLEDLKELIAKLNATIF 216 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCcEEEECCCccHHHHHHHHhCCCCCcEE
Confidence 34444433 555 48888888888899999999988664 44432 122000000000110000 1 112358988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-. . .. .......+.++++|+++..
T Consensus 217 id~--~---g~-----~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 217 FDA--V---GG-----GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred EEC--C---Cc-----HHHHHHHHhhCCCCEEEEE
Confidence 853 2 11 2334567788999988775
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.93 E-value=4.2 Score=31.04 Aligned_cols=97 Identities=21% Similarity=0.187 Sum_probs=54.1
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEE
Q 030558 7 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i 82 (175)
.++.+||=.|+| .|..+..+++..+.+ |++++-++... +.++.. +....+.....++.+.+ . ...+.+|++
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRL-ELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 356777777776 377777788887886 88997776553 222211 11000000000110000 1 123468998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-... . . ..+.++.+.++++|+++..
T Consensus 235 ld~~g----~--~---~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 235 LEMSG----A--P---KALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred EECCC----C--H---HHHHHHHHhhcCCCEEEEE
Confidence 87411 1 1 5677888999999988765
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.91 E-value=4.8 Score=30.63 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=52.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHh-CCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKA-MNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
..++.+||=.|+|. |..+..+++. .|.. ++++|.+++.. +.++.. +....+......+..........+|++
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~v 232 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERL-ALAKES----GADWVINNAQEPLGEALEEKGIKPTLI 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHh----CCcEEecCccccHHHHHhcCCCCCCEE
Confidence 44677888889764 7777777774 3665 88899888664 333321 110000000000000111111134566
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-... .. ..+.+..+.++++|+++..
T Consensus 233 id~~g------~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 233 IDAAC------HP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 54311 11 4678888999999998875
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=85.59 E-value=0.66 Score=34.97 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHH
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 155 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (175)
.+.||+|+.+..+.+...+ ++.++++|++.+++- ...++...+..-...-.+...+++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvE--------------taKfmvdLrKEq~~~F~~kv~eLA 277 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVE--------------TAKFMVDLRKEQLQEFVKKVKELA 277 (289)
T ss_pred cCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEE--------------cchhheeCCHHHHHHHHHHHHHHH
Confidence 4579998887665333321 277788999988884 222233222111111136777889
Q ss_pred HHcCCeeE
Q 030558 156 ENAGLEVK 163 (175)
Q Consensus 156 ~~~g~~~~ 163 (175)
+++||+..
T Consensus 278 ~~aG~~p~ 285 (289)
T PF14740_consen 278 KAAGFKPV 285 (289)
T ss_pred HHCCCccc
Confidence 99999754
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=5.1 Score=30.52 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred CCcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH-hhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 9 RRRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS-TTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+|+=+|+|. |.++..|++. +.+|+.+..++. +...++. ....................+ ..+.+|+|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 35788899986 4455666554 788998888762 2222211 110000000000000111111 23478988764
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-=- . +...+++.+...+++++.++..
T Consensus 80 vK~---~---~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 80 LKT---T---ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred ecC---C---ChHhHHHHHhhhcCCCCEEEEe
Confidence 221 1 2236777777888888866555
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.04 E-value=7.7 Score=31.64 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
...+++|+=+|.|. |..+..+++..|.+|+++|.++..+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~ 48 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL 48 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 44678999999984 7666666666689999999776543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=85.01 E-value=0.95 Score=30.27 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=50.5
Q ss_pred EEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH-HhhCCCCCCcceeeccCCCCC---CCCCCCccEEEeCCc
Q 030558 13 IELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-STTNGITPALPHIKHSWGDAF---PIPNPDWDLILASDI 87 (175)
Q Consensus 13 LDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~~~~~ 87 (175)
+=+|+|. |.+-....+..+.+|+.++-++ .+ +..+.+ ...... . ........... ......+|+|+..-=
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~-~~~~~~g~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RL-EAIKEQGLTITGP--D-GDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH-HH-HHHHHHCEEEEET--T-EEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc-cH-HhhhheeEEEEec--c-cceecccccccCcchhccCCCcEEEEEec
Confidence 3467764 4444333233488999999987 44 333322 111111 0 00001110111 123458999887521
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
- . +...+++.+.+.+.|+..+++.....
T Consensus 77 a---~---~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 77 A---Y---QLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp G---G---GHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred c---c---chHHHHHHHhhccCCCcEEEEEeCCC
Confidence 1 2 33488899999999997666664443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.3 Score=31.35 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=29.8
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHH
Q 030558 7 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
..++++|=+|.- +|.....+.+. .++|+.+|+.|.|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~ 79 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFM 79 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHH
Confidence 357889999996 78888777665 8899999999976
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.74 E-value=15 Score=29.71 Aligned_cols=75 Identities=21% Similarity=0.120 Sum_probs=41.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+++|+=+|+|. |.-+..++...|.+|+++|.++........+.....+. .+..+.... ....+|+|+.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-------~~~~~~~~~-~~~~~D~Vv~ 84 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-------TVRLGPGPT-LPEDTDLVVT 84 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-------EEEECCCcc-ccCCCCEEEE
Confidence 34578899999984 66554444555889999997764321333333444333 111111111 1235798887
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+..+
T Consensus 85 s~Gi 88 (480)
T PRK01438 85 SPGW 88 (480)
T ss_pred CCCc
Confidence 6554
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=84.62 E-value=13 Score=28.34 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=27.5
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHh-CCCcEEEEeCChHHH
Q 030558 7 IERRRCIELGSGT-GALAIFLRKA-MNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~l 44 (175)
.++++|+=+|+|. |......... .+.+|+.+|.++...
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 4789999999985 7665444343 346799999988654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=84.61 E-value=1.2 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCCccEEEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHH
Q 030558 76 NPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFT 153 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (175)
...||+|+.-.. .....+++ ..+++++.++++|||++.. |. ....+.+
T Consensus 48 ~~~~Da~ylDgF--sP~~nPelWs~e~~~~l~~~~~~~~~l~T--ys--------------------------~a~~Vr~ 97 (124)
T PF05430_consen 48 DARFDAWYLDGF--SPAKNPELWSEELFKKLARLSKPGGTLAT--YS--------------------------SAGAVRR 97 (124)
T ss_dssp -T-EEEEEE-SS---TTTSGGGSSHHHHHHHHHHEEEEEEEEE--S----------------------------BHHHHH
T ss_pred cccCCEEEecCC--CCcCCcccCCHHHHHHHHHHhCCCcEEEE--ee--------------------------chHHHHH
Confidence 367888887421 11111111 4899999999999985444 11 1366888
Q ss_pred HHHHcCCeeEEec
Q 030558 154 SCENAGLEVKHLG 166 (175)
Q Consensus 154 ~~~~~g~~~~~~~ 166 (175)
.+.++||+|+...
T Consensus 98 ~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 98 ALQQAGFEVEKVP 110 (124)
T ss_dssp HHHHCTEEEEEEE
T ss_pred HHHHcCCEEEEcC
Confidence 9999999998773
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=84.43 E-value=11 Score=32.44 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=80.8
Q ss_pred CcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHH---H----HhhCCCCCC-----cceeeccCCCCCCCC
Q 030558 10 RRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAY---N----STTNGITPA-----LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~---~----~~~~~~~~~-----~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ |.- +..++...|.+|+..|.+++.++....+ . ......... ...+. ...++. .
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~~~~-~ 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT--GTTDYR-G 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE--EeCChH-H
Confidence 4688889987 332 2334433489999999999876422211 1 111111100 01111 111221 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCc-eEee--e
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPA-FLMS--W 139 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~--~ 139 (175)
-..-|+|+=+ +. ++.+--.++++++-+.++|+..+...+....-.. .+++.+... -+.. .
T Consensus 382 ~~~adlViEa-v~---E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~ 457 (699)
T TIGR02440 382 FKDVDIVIEA-VF---EDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIP 457 (699)
T ss_pred hccCCEEEEe-cc---ccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeC
Confidence 2356888765 22 5555567999999999999975555433332111 111111111 0111 1
Q ss_pred eccCCCcchhHHHHHHHHcCCeeEEecceEEEEec
Q 030558 140 RRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 174 (175)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 174 (175)
......+..+...++++..|.+...+.+..-+|.+
T Consensus 458 g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~n 492 (699)
T TIGR02440 458 HAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVN 492 (699)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEccccchHHH
Confidence 11222223456667788889887777666555443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.39 E-value=2.1 Score=33.74 Aligned_cols=39 Identities=18% Similarity=0.032 Sum_probs=27.4
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.+.++++||=|.+|- ..++.+......+|+++|+||.++
T Consensus 32 ~i~~~d~vl~ItSaG-~N~L~yL~~~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 32 NIGPDDRVLTITSAG-CNALDYLLAGPKRIHAVDLNPAQN 70 (380)
T ss_pred CCCCCCeEEEEccCC-chHHHHHhcCCceEEEEeCCHHHH
Confidence 456788999997653 334443344367899999999774
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=12 Score=28.00 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=22.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCCh
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYND 41 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~ 41 (175)
.++++++|=.|++. .++..+++.+ +.+|+.++.++
T Consensus 43 ~~~~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34567888888644 3344433322 78899998875
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=8.1 Score=29.06 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=47.5
Q ss_pred cEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCc--ceeeccC--CCCCCCCCCCccEEEe
Q 030558 11 RCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL--PHIKHSW--GDAFPIPNPDWDLILA 84 (175)
Q Consensus 11 ~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~fD~i~~ 84 (175)
+|+=+|+|. |. ++..+++. +.+|+.++. ++.+ +.++. .+..... ....... .++.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r-~~~~-~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR-PKRA-KALRE----RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec-HHHH-HHHHh----CCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 466788886 44 34455554 788999998 5554 33332 1220000 0000000 1111111256898776
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.--- . ....+++++...+.++..++..
T Consensus 75 avk~---~---~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 75 AVKA---Y---QLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred Eecc---c---CHHHHHHHHHhhcCCCCEEEEe
Confidence 4221 1 3347778888878777654444
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.88 E-value=16 Score=27.34 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=73.5
Q ss_pred cEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHH------HHHhhCC-CCCC-ccee--eccCCCCCCCCCCC
Q 030558 11 RCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIA------YNSTTNG-ITPA-LPHI--KHSWGDAFPIPNPD 78 (175)
Q Consensus 11 ~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~------~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~~~ 78 (175)
+|.=||+|. +.++..+++. +.+|+++|.+++.++.... ......+ .... .... .+....+.. .-..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 466678885 4444555554 7899999999987632111 1111112 1000 0000 001111111 1235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC------------CCCCCCC-CC---ceEeeeecc
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG------------EGTEGLP-WP---AFLMSWRRR 142 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~------------~~~~~~~-~~---~~~~~~~~~ 142 (175)
.|+|+.+-. ++.+....+++++.+.++|+..+...+....-. ...++.. .+ ..-......
T Consensus 83 aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~ 158 (282)
T PRK05808 83 ADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLA 158 (282)
T ss_pred CCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCC
Confidence 688877522 323333489999999999987553332222110 1111111 10 111111122
Q ss_pred CCCcchhHHHHHHHHcCCeeEEecceE
Q 030558 143 IGKEDETIFFTSCENAGLEVKHLGSRV 169 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (175)
...+..+....+++..|..+..+.+..
T Consensus 159 t~~e~~~~~~~l~~~lGk~pv~~~d~~ 185 (282)
T PRK05808 159 TSDATHEAVEALAKKIGKTPVEVKNAP 185 (282)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 223344667777888898877765543
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.87 E-value=7.6 Score=31.36 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=46.0
Q ss_pred CCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+++|+=+|-| +|.-+..+..+.|..|++.|.++... ......... ..+....+....+....+|+|+.+.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~-~~~~~~~~~-------~~i~~~~g~~~~~~~~~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPE-GLAAQPLLL-------EGIEVELGSHDDEDLAEFDLVVKSP 77 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCcc-chhhhhhhc-------cCceeecCccchhccccCCEEEECC
Confidence 38899999998 57777666666699999999988662 121111111 1222333322224456789999987
Q ss_pred cc
Q 030558 87 IL 88 (175)
Q Consensus 87 ~l 88 (175)
.+
T Consensus 78 Gi 79 (448)
T COG0771 78 GI 79 (448)
T ss_pred CC
Confidence 77
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.73 E-value=4.9 Score=30.27 Aligned_cols=102 Identities=13% Similarity=0.179 Sum_probs=53.2
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHH---H----HHhhCCCCCCcc-ee--eccCCCCCCCCCC
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIA---Y----NSTTNGITPALP-HI--KHSWGDAFPIPNP 77 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~---~----~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 77 (175)
++|-=||+|+ | ..+..++.. |.+|+..|.+++.++...+ + ............ .. .+....+.. .-.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG-DFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH-HhC
Confidence 3677789986 3 333445554 8999999999988642211 1 111111100000 00 000111221 123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhc-CCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l-~pgG~~~~~ 117 (175)
.-|+|+-+ +. ++.+--..++.++-+.+ +|+..+...
T Consensus 84 ~~d~ViEa-v~---E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 84 DRQLVIEA-VV---EDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred CCCEEEEe-cc---cCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 56888875 22 44444557888888888 777655444
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=15 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=27.8
Q ss_pred CccccCCCcEEEeCCCcc-HHHHHHHHhC---CCcEEEEeCChHH
Q 030558 3 HREWIERRRCIELGSGTG-ALAIFLRKAM---NLDITTSDYNDQE 43 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G-~~~~~l~~~~---~~~v~~~D~s~~~ 43 (175)
....++++++|=.|+++| .++..+++.+ |.+|+.+|.++..
T Consensus 4 ~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 4 PLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred cccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 344467899999998762 5555444433 7889999887643
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.17 E-value=7.2 Score=30.16 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=56.1
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CC-CCCCccEE
Q 030558 7 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~i 82 (175)
.++.+||=.|+| .|..+..+++..+.. |++++.++... +.++. . +....+.....++...+ .. ....+|++
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~-~~~~~-~---g~~~vv~~~~~~~~~~l~~~~~~~~vd~v 255 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKL-ELARR-F---GATHTVNASEDDAVEAVRDLTDGRGADYA 255 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHH-h---CCeEEeCCCCccHHHHHHHHcCCCCCCEE
Confidence 457788888886 477778888888886 99998887664 33321 1 11000000000000000 11 13468988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.... .. ..+.+..+.++++|+++..
T Consensus 256 ld~~~------~~---~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 256 FEAVG------RA---ATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEcCC------Ch---HHHHHHHHHhhcCCeEEEE
Confidence 75321 11 5567888999999988765
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.00 E-value=9.8 Score=28.60 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=51.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHH---HHHhh---CCCCCC------cceeeccCCCCCCCC
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIA---YNSTT---NGITPA------LPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~---~~~~~---~~~~~~------~~~~~~~~~~~~~~~ 75 (175)
++|.=||+|+ | .++..++.. +.+|+.+|.+++.++...+ ++... .+.... ...+ ...++...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i--~~~~~~~~- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI--STATDLED- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe--EeeCCHHH-
Confidence 4677788886 3 333445444 7899999999987632221 11110 111000 0001 11122211
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
-...|+|+.+-. .+.+....+++++...++|+..++
T Consensus 81 ~~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 LADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred hcCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 235688877521 222334477888888899987554
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.87 E-value=5 Score=30.12 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=49.6
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH----h----hCCCCCC------cceeeccCCCCCC
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS----T----TNGITPA------LPHIKHSWGDAFP 73 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~----~----~~~~~~~------~~~~~~~~~~~~~ 73 (175)
++|.=||+|+ | .++..+++. +.+|+.+|.+++.+++ ++... . ....... ...+ ....+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEK-AKERIAKLADRYVRDLEATKEAPAEAALNRI--TLTTDLA 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCChhhhHHHHHcCe--EEeCCHH
Confidence 3567778886 3 233344444 7889999999987633 22221 1 0011000 0011 0112221
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCce
Q 030558 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
..-..-|+|+.+-. ...+....+++++...++++..+
T Consensus 80 ~a~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 80 EAVKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HHhcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEE
Confidence 11234588877522 22334557888888888877644
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=82.87 E-value=7.5 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=25.6
Q ss_pred ccCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCCh
Q 030558 6 WIERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYND 41 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~ 41 (175)
.+.+++||=+|||. |... ..++..+-.+++.+|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 34678999999984 6655 446555445799999873
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=82.76 E-value=1.1 Score=36.11 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=51.1
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhC-----CCcEE------EEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAM-----NLDIT------TSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 72 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~-----~~~v~------~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (175)
..+++++|+=||||+ |. ++.. |.+|+ ++|.+...- +.+. ..+.. . ...
T Consensus 32 ~~LkgKtIaIIGyGSqG~-----AqAlNLrdSGvnVvvglr~~~id~~~~s~-~kA~----~dGF~---------v-~~~ 91 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGL-----NQGLNMRDSGLDISYALRKEAIAEKRASW-RKAT----ENGFK---------V-GTY 91 (487)
T ss_pred HHhCCCEEEEEccCHHHH-----HHhCCCccccceeEEeccccccccccchH-HHHH----hcCCc---------c-CCH
Confidence 457899999999997 66 2333 44444 344434332 2211 11220 0 011
Q ss_pred CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 73 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 73 ~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
...-..-|+|++.- ++. ....+.+++...||||..|.+++
T Consensus 92 ~Ea~~~ADvVviLl-----PDt-~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 92 EELIPQADLVINLT-----PDK-QHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHHHHhCCEEEEcC-----ChH-HHHHHHHHHHhhCCCCCEEEecC
Confidence 11123568888753 323 25567799999999999999983
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.58 E-value=10 Score=28.70 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=47.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|.=||+|. | .++..+++. + .+|+++|.+++.+ +.++. .+.. ... .......-...|+|+.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~-~~a~~----~g~~---~~~----~~~~~~~~~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETR-ARARE----LGLG---DRV----TTSAAEAVKGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHH-HHHHh----CCCC---cee----cCCHHHHhcCCCEEEEC
Confidence 5688888886 3 334445443 4 3799999998765 33321 1210 000 01111112356888775
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-.. .....+++++...++++..++.
T Consensus 74 vp~------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 74 VPV------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CCH------HHHHHHHHHHHhhCCCCCEEEe
Confidence 432 1233667777777888764443
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.40 E-value=5.4 Score=30.86 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=55.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcc--eeeccCCCC---C-CCCCC
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALP--HIKHSWGDA---F-PIPNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~-~~~~~ 77 (175)
..++.+||=+|+|. |..+..+++..+.+ |+++|.++... +.++.. +...... ....++... + ....+
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERL-SVAKQL----GADEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCCEEEecCcccccHHHHHHHHhhhcCC
Confidence 34677888888763 77778888877765 88999887654 333221 1100000 000001000 0 01123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-. .. ..+.+..+.++++|+++..
T Consensus 254 ~~d~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVG------FN---KTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 6888876411 11 4678888999999987755
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.12 E-value=4 Score=33.03 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=61.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-----CCC--CCCCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-----AFP--IPNPDW 79 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~f 79 (175)
.+.++|=+|=|.|.+...+...+. .++++++++|.|+ +.++.+.....- .-..++...|- ... ..+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~--~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQS--DRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhh--hhhhhhHhhchHHHHHHhhccccccCC
Confidence 467788888888988877755444 7899999999998 333322211000 00112222221 111 134478
Q ss_pred cEEEe----CC--cccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 80 DLILA----SD--ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 80 D~i~~----~~--~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|+++. .+ -+...+..---..++......+.|.|.+.+..
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 98875 22 11111110012467788888999999887763
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.12 E-value=2.8 Score=32.02 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=63.7
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CCC----------
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAF---------- 72 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------- 72 (175)
..++.++|=+|.|. |......+..+|.-|++.|..+..= +..+ ....+... .....-.-+ ..+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~K-eqv~-s~Ga~f~~--~~~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKK-EQVE-SLGAKFLA--VEDEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHh-hhhh-hccccccc--ccccccCCCccccCCHHHHHHHHH
Confidence 34567788888886 6666777788788899999866431 1111 11111110 000000000 011
Q ss_pred --CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 73 --PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 73 --~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...-..+|+||....+ +..+.+.-+-+++...+|||..++=.
T Consensus 237 ~~a~~~~~~DivITTAlI---PGrpAP~Lvt~~mv~sMkpGSViVDl 280 (356)
T COG3288 237 LVAEQAKEVDIVITTALI---PGRPAPKLVTAEMVASMKPGSVIVDL 280 (356)
T ss_pred HHHHHhcCCCEEEEeccc---CCCCCchhhHHHHHHhcCCCcEEEEe
Confidence 1123479999999888 77777788999999999999855443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.04 E-value=5.7 Score=29.93 Aligned_cols=84 Identities=20% Similarity=0.151 Sum_probs=46.0
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030558 10 RRCIELGSGT--GALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~--v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
.+|+=+|.|- |.++..+... |.. +++.|.+...+... ...... ....... .......|+|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a----~~lgv~--------d~~~~~~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAA----LELGVI--------DELTVAGLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHH----hhcCcc--------cccccchhhhhcccCCEEEE
Confidence 4677788874 5555666444 555 46666666544221 111111 0000111 223345799887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKD 112 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG 112 (175)
+-.+ ....++++++...+++|.
T Consensus 71 avPi------~~~~~~l~~l~~~l~~g~ 92 (279)
T COG0287 71 AVPI------EATEEVLKELAPHLKKGA 92 (279)
T ss_pred eccH------HHHHHHHHHhcccCCCCC
Confidence 6444 334488888888888885
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.93 E-value=4.3 Score=31.76 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=55.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec---cCCCC-CC-CCCCC
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH---SWGDA-FP-IPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~ 78 (175)
..+|.+||=.|+|. |..++.+++..|. +|++++.++... +.++. .+....+..... .+.+. .. .....
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~-~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERR-NLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHH----cCCCEEEcccccccccHHHHHHHhcCCCC
Confidence 44577777778864 7777778888788 699999887643 32222 111000010000 01000 01 12235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+.. . .... ..+.+..+.++++|+++..
T Consensus 276 vDvvld~--~---g~~~---~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 276 ADIQVEA--A---GAPP---ATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCEEEEC--C---CCcH---HHHHHHHHHHHcCCEEEEE
Confidence 8988864 2 2112 5677788889999988865
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=81.92 E-value=12 Score=28.46 Aligned_cols=153 Identities=14% Similarity=0.041 Sum_probs=81.9
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC--CCcceeeccCC-CCC----C---CCCCCc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT--PALPHIKHSWG-DAF----P---IPNPDW 79 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~----~---~~~~~f 79 (175)
..|+-||||-=.-+..+-...+.+|+=+|..+ .+ +.-++.....+.. .....+..+.. ++. . +..+.-
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pe-vi-~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPE-VI-EFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcH-HH-HHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 66899999864444334222135566666654 32 4444444443321 13344444443 222 1 223445
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCC---CCCCCCc--e-EeeeeccCCCcchhHHHH
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT---EGLPWPA--F-LMSWRRRIGKEDETIFFT 153 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~---~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 153 (175)
-++++-.++.|.. .+...+++..+...+.||..+++........... ....... + ......++...+..+..+
T Consensus 172 t~~iaEGLl~YL~-~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 172 TLWIAEGLLMYLP-EEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred eEEEeccccccCC-HHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 5788888886766 5678899999999998988777654311111011 1100000 0 001112333445678888
Q ss_pred HHHHcCCeeEEe
Q 030558 154 SCENAGLEVKHL 165 (175)
Q Consensus 154 ~~~~~g~~~~~~ 165 (175)
.+.+.|+.....
T Consensus 251 ~l~~~g~~~~~~ 262 (297)
T COG3315 251 WLAERGWRSTLN 262 (297)
T ss_pred HHHhcCEEEEec
Confidence 899999876554
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.89 E-value=9.1 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=24.3
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHH
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIE 45 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~ 45 (175)
++|.=||+|. | .++..+++. +.+|+++|.+++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~~~~~ 41 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GLQVVLIDVMEGALE 41 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHH
Confidence 4566788886 3 344445444 778999999998763
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=81.88 E-value=2.3 Score=32.44 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=31.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~ 51 (175)
..+++..+|.=-|.|..+..+.+.. ...|+|+|.++.++ +.++..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~ 63 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKER 63 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCC
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHH
Confidence 3467789999999999998887754 57899999999997 555543
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.85 E-value=12 Score=30.44 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=28.3
Q ss_pred CccccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChH
Q 030558 3 HREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
......+++|+=+|+| +|.-...+....|..|++.|.+..
T Consensus 9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 49 (473)
T PRK00141 9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET 49 (473)
T ss_pred hcccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH
Confidence 4455677899999998 466434444555889999997653
|
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.75 E-value=7.2 Score=29.75 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=54.1
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccEEE
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~i~ 83 (175)
+|++||=.|+|. |..+..+++..+. +|++++.++... +.++.. +....+......+.+.+ . ...+.+|+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRL-ELARKM----GATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHh----CCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 577777788764 7777788887787 588888777554 332221 11000000000010001 1 1234688887
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-... .. ..++...++++++|+++..
T Consensus 238 d~~g------~~---~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 238 EMSG------AP---SAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred ECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 6311 11 5677788899999988776
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=8 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=26.1
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
...+++|+=+|-|. |.....+....|..|+++|.++.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 34578899999986 44333344445899999998763
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.23 E-value=6.9 Score=30.22 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=49.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.|++|.=||+|. |......++..|.+|+++|.++...... .. . ...+...-..-|+|+.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~---~-----------~~~l~ell~~aDiVil 204 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LT---Y-----------KDSVKEAIKDADIISL 204 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hh---c-----------cCCHHHHHhcCCEEEE
Confidence 35678888899986 6544444455689999999987542110 00 0 0111111234588777
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.. . .+....+-+++...+|||..++-+
T Consensus 205 ~lP~---t-~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 205 HVPA---N-KESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred eCCC---c-HHHHHHHhHHHHhcCCCCcEEEEc
Confidence 5443 1 111224456777888887644433
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.14 E-value=12 Score=28.46 Aligned_cols=92 Identities=23% Similarity=0.225 Sum_probs=53.3
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCCCccEEE
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~ 83 (175)
.++.+++=.|||. |..+..+++..+.++++++.+++.. +.++. . +. ..+ ++..+ ......+.+|+++
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~-~---g~----~~v-i~~~~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKK-EDALK-L---GA----DEF-IATKDPEAMKKAAGSLDLII 237 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHH-c---CC----cEE-ecCcchhhhhhccCCceEEE
Confidence 3456666678754 7777778887788999999988664 33321 1 11 010 11000 0011134688888
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
....- . ..+....++++++|+++..
T Consensus 238 ~~~g~------~---~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 238 DTVSA------S---HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred ECCCC------c---chHHHHHHHhcCCCEEEEE
Confidence 53211 1 2456778889999988765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.14 E-value=11 Score=28.75 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=51.3
Q ss_pred cEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH-HhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 11 RCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 11 ~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+|+=+|+|. |.++..|++. +..|+.+-.++. + +.++++ ........ ...........+.....+|+|+..-=
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~-~-~~l~~~GL~i~~~~~--~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR-L-EALKKKGLRIEDEGG--NFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH-H-HHHHhCCeEEecCCC--ccccccccccChhhcCCCCEEEEEec
Confidence 677899996 4455667665 556777766654 4 333322 11111100 00000000111222347999887422
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
- . +...+++.+...++|...+++.
T Consensus 77 a---~---q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 77 A---Y---QLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred c---c---cHHHHHHHhhhcCCCCcEEEEE
Confidence 1 2 3348999999999999766665
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.07 E-value=0.68 Score=31.66 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=40.7
Q ss_pred EEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 12 CIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
|-=||+| ..+..+++++ +.+|++.|.+++..++..+. +. .. .+.....-...|+|++. +
T Consensus 4 Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-----g~----~~-----~~s~~e~~~~~dvvi~~--v 65 (163)
T PF03446_consen 4 IGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-----GA----EV-----ADSPAEAAEQADVVILC--V 65 (163)
T ss_dssp EEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-----TE----EE-----ESSHHHHHHHBSEEEE---S
T ss_pred EEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-----hh----hh-----hhhhhhHhhcccceEee--c
Confidence 3335555 4444444432 88999999998765322221 11 00 01111111234888774 2
Q ss_pred cCcccchHHHHHHHH--HHhhcCCCCcee
Q 030558 89 LYVKQYSNLIKSLSV--LLKSYKPKDSQV 115 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~--l~~~l~pgG~~~ 115 (175)
++......++.. +...+++|..++
T Consensus 66 ---~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 66 ---PDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp ---SSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred ---ccchhhhhhhhhhHHhhccccceEEE
Confidence 334455677777 777777765333
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=81.02 E-value=3.3 Score=28.10 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=50.4
Q ss_pred EEEeCCCccHHHHH-HHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeCCccc
Q 030558 12 CIELGSGTGALAIF-LRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 12 vLDlGcG~G~~~~~-l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
|.=||+|.+..++. .....+.+|+....+++.+ +.++..............- .....++++..-..-|+|+..-.-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 45578887555532 2233377899999999776 5554433321111111100 000112222112345777764222
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 90 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..+..+++++...++++-.+++...+
T Consensus 80 -----~~~~~~~~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 80 -----QAHREVLEQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp -----GGHHHHHHHHTTTSHTT-EEEETS-S
T ss_pred -----HHHHHHHHHHhhccCCCCEEEEecCC
Confidence 12448888898888777655554333
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.77 E-value=12 Score=31.99 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=24.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHH---hCCCcEEEEeCChHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRK---AMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~---~~~~~v~~~D~s~~~l 44 (175)
.++|+++|=.|++ |.++..+++ ..|.+|+++|.++..+
T Consensus 419 ~l~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~ 459 (681)
T PRK08324 419 PLAGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAA 459 (681)
T ss_pred CCCCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHH
Confidence 3467888888753 333333322 2378999999998765
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=80.22 E-value=7.3 Score=28.95 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=54.4
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-C-CCCCCccE
Q 030558 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~ 81 (175)
..++.+|+-.|| | .|.....+++..+..|++++.++... +.++. . +....+.....+..+.. . .....+|+
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~-~---g~~~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKL-ALARA-L---GADHVIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHH-HHHHH-c---CCceeeecCCccHHHHHHHHcCCCCcEE
Confidence 345788999998 3 57777778887788999999887664 33321 1 11000000000000000 0 12235888
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.... . ..+....+.++++|+++..
T Consensus 212 v~~~~g-----~-----~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 212 VYDPVG-----G-----DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EEECcc-----H-----HHHHHHHHhhccCCEEEEE
Confidence 875321 1 3445677888999987754
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=80.21 E-value=1.5 Score=32.48 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccCcccchHHHHHH
Q 030558 23 AIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSL 101 (175)
Q Consensus 23 ~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l 101 (175)
++.+.+.. ..+|+++|.++..+ +.+.+ . +.. .... .... .-..+|+|+.+-.+ .....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~-~~a~~---~-g~~---~~~~----~~~~-~~~~~DlvvlavP~------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETL-EAALE---L-GII---DEAS----TDIE-AVEDADLVVLAVPV------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHH-HHHHH---T-TSS---SEEE----SHHH-HGGCCSEEEE-S-H------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHH-HHHHH---C-CCe---eecc----CCHh-HhcCCCEEEEcCCH------HHHHHHH
Confidence 55665653 37899999999776 33221 1 220 1110 0000 11346988876443 3455888
Q ss_pred HHHHhhcCCCCc
Q 030558 102 SVLLKSYKPKDS 113 (175)
Q Consensus 102 ~~l~~~l~pgG~ 113 (175)
+++...+++|+.
T Consensus 63 ~~~~~~~~~~~i 74 (258)
T PF02153_consen 63 EEIAPYLKPGAI 74 (258)
T ss_dssp HHHHCGS-TTSE
T ss_pred HHhhhhcCCCcE
Confidence 888888887753
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 175 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 2e-17 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 2e-17
Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 31/177 (17%)
Query: 2 HHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL 61
E I + ELG+G G ++I A + +DY D EI +++ N +
Sbjct: 73 WQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCS 132
Query: 62 PH---------IKHSWGDA-----FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKS 107
+ + WGD+ + ++L +D+L + + + L++S+ +LL
Sbjct: 133 SETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLAL 192
Query: 108 YKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164
+ + R E + FF G +
Sbjct: 193 PANDPT-----------------AVALVTFTHHRPHLAERDLAFFRLVNADGALIAE 232
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 175 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.85 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.84 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.84 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.84 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.84 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.84 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.84 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.83 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.83 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.83 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.83 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.82 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.82 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.82 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.82 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.82 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.82 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.82 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.82 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.81 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.81 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.81 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.81 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.81 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.81 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.81 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.8 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.8 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.8 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.8 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.8 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.8 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.8 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.79 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.79 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.79 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.79 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.78 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.78 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.78 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.78 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.78 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.78 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.77 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.77 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.77 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.77 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.76 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.76 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.76 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.76 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.76 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.76 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.75 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.75 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.75 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.75 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.75 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.75 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.74 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.74 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.74 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.74 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.74 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.74 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.73 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.73 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.73 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.73 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.73 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.72 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.72 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.72 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.72 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.72 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.71 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.71 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.71 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.7 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.7 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.7 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.7 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.7 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.69 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.69 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.69 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.69 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.69 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.69 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.69 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.69 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.69 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.68 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.68 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.68 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.68 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.68 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.68 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.67 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.67 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.67 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.67 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.67 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.66 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.66 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.66 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.66 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.66 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.65 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.65 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.65 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.65 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.65 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.64 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.64 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.64 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.64 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.64 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.64 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.63 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.63 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.63 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.63 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.63 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.63 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.63 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.63 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.63 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.63 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.63 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.62 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.62 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.62 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.61 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.61 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.61 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.61 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.61 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.61 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.6 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.6 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.6 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.6 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.6 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.6 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.59 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.58 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.58 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.58 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.58 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.58 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.58 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.58 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.57 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.57 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.57 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.57 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.57 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.57 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.56 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.56 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.56 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.56 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.56 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.55 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.55 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.54 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.54 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.54 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.53 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.53 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.53 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.52 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.51 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.51 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.51 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.51 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.51 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.51 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.5 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.5 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.49 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.49 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.49 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.49 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.49 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.49 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.49 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.48 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.47 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.46 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.46 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.46 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.46 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.46 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.46 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.45 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.45 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.45 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.44 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.44 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.43 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.43 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.42 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.42 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.42 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.42 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.42 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.41 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.41 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.41 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.4 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.4 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.4 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.39 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.39 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.39 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.38 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.38 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.38 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.37 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.37 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.37 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.36 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.35 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.34 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.33 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.31 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.3 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.3 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.28 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.27 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.27 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.25 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.22 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.2 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.19 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.19 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.19 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.18 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.15 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.15 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.13 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.12 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.1 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.05 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.02 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.0 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.99 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.97 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.95 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.94 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.93 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.93 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.93 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.88 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.87 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.84 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.8 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.78 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.78 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.77 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.76 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.72 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.7 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.69 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.62 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.54 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.54 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.49 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.46 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.45 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.44 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.22 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.21 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.17 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.16 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.02 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.97 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.95 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.92 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.82 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.81 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.6 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.43 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 97.34 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.24 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.11 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.06 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.03 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.02 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.01 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.97 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.96 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.89 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.84 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.84 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.78 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.74 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.72 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.7 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.68 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.66 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.63 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.53 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.53 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.53 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.51 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.5 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.49 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.48 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.46 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.46 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.43 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.4 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.36 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.32 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.3 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.29 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.28 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.25 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.25 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.23 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.19 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.11 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.1 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.03 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.03 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.0 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.98 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.96 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.9 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.89 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.87 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 95.85 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.85 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.83 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.71 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.7 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.58 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.58 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.58 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.56 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.51 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.5 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 95.5 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.49 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.45 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.43 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.39 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.24 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.21 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.17 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.07 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.02 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.98 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.95 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.65 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.6 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 93.93 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.87 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.81 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.79 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 93.77 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.56 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 93.54 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.12 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 93.08 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.77 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 92.6 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.31 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 92.23 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.03 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 91.94 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.49 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 91.31 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 90.54 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 90.34 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 90.12 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.06 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 90.04 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 89.62 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.49 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 89.29 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 89.22 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 88.92 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 88.92 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 88.59 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 88.53 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 88.36 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 88.24 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 87.92 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 87.08 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 86.99 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 86.94 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 86.85 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 86.76 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 86.68 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 86.64 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 86.64 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 86.63 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 86.57 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 86.5 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 86.41 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 86.39 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 86.15 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 85.91 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 85.88 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 85.77 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 85.53 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 85.34 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 85.22 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 84.81 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 84.79 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 84.64 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 84.34 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 84.33 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 84.29 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 84.21 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 83.95 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 83.82 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 83.7 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 83.6 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 83.59 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 83.46 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 82.92 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 82.78 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 82.55 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 82.48 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 82.27 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 82.27 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 82.01 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 81.78 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 81.56 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 81.52 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 81.48 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 81.13 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 81.03 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 81.01 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 80.83 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 80.53 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 80.4 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 80.14 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 80.14 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=139.31 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=84.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
..+|.+|||||||+|..+..+++.. +.+|+|+|+|+.|+ +.++++....+...++. +..++....+.+.||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml-~~A~~~~~~~~~~~~v~---~~~~D~~~~~~~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVD---VIEGDIRDIAIENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHH-HHHHHHHHTSCCSSCEE---EEESCTTTCCCCSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHHHHHhhccCceEE---Eeecccccccccccccc
Confidence 3478999999999999999998864 56899999999998 77777776655533333 33344444445679999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+++.++++.. .++...++++++++|||||++++..
T Consensus 144 ~~~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 144 VLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeeeeecC-chhHhHHHHHHHHHcCCCcEEEEEe
Confidence 9999985544 5567789999999999999999873
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=141.14 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=104.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|..+..+++..+.+|+++|+|+.++ +.++++....+...++..+..+..+ .++ +++||+|++.
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~V~~~ 110 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSERVHFIHNDAAG-YVA-NEKCDVAACV 110 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCCTT-CCC-SSCEEEEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEECChHh-CCc-CCCCCEEEEC
Confidence 456789999999999999999988788999999999998 7777777766664445555544433 334 6799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC--CCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG--TEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
.++++..+ ...+++++.++|||||++++..+....... .+... +....... ..+...+.++++++||++.
T Consensus 111 ~~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 111 GATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQA---CGVSSTSD--FLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp SCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHT---TTCSCGGG--SCCHHHHHHHHHTTTBCCC
T ss_pred CChHhcCC---HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHH---Hhcccccc--cCCHHHHHHHHHHCCCeeE
Confidence 99866554 449999999999999999997543221110 00000 00000011 1235889999999999876
Q ss_pred Ee
Q 030558 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
++
T Consensus 183 ~~ 184 (256)
T 1nkv_A 183 EM 184 (256)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=141.36 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=107.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++..+.+|+++|+|+.++ +.++++....+...++..+..+.. .+++++++||+|++.
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~ 136 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQV-NQANARATAAGLANRVTFSYADAM-DLPFEDASFDAVWAL 136 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTT-SCCSCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEECccc-cCCCCCCCccEEEEe
Confidence 346789999999999999999887788999999999998 677777666665444444444432 345667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC-CCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-WPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
.++++..+ ...+++++.++|+|||++++............... ...+...+ ......+...+.++++++||++.+
T Consensus 137 ~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~ 212 (273)
T 3bus_A 137 ESLHHMPD---RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGG-GVLSLGGIDEYESDVRQAELVVTS 212 (273)
T ss_dssp SCTTTSSC---HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHH-TCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred chhhhCCC---HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhc-CccCCCCHHHHHHHHHHcCCeEEE
Confidence 99966654 45999999999999999998754432211000000 00000000 011122358899999999999876
Q ss_pred ec
Q 030558 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 213 ~~ 214 (273)
T 3bus_A 213 TV 214 (273)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=142.84 Aligned_cols=154 Identities=9% Similarity=0.011 Sum_probs=109.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++..+.+|+++|+++.++ +.++++....+...++..+..+.. .+++.+++||+|++.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~ 192 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQA-DFGNRRARELRIDDHVRSRVCNML-DTPFDKGAVTASWNN 192 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTT-SCCCCTTCEEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHHcCCCCceEEEECChh-cCCCCCCCEeEEEEC
Confidence 456889999999999999999887678999999999998 777777777776444555544443 345667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.++++. + ...+++++.++|||||++++..................+...+.. ...+..++.++++++||++.++
T Consensus 193 ~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 193 ESTMYV-D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFEC--NIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp SCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTC--CCCBHHHHHHHHHTTTEEEEEE
T ss_pred CchhhC-C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcC--CCCCHHHHHHHHHHCCCEEEEE
Confidence 998555 3 669999999999999999988544432221110000000000111 1224689999999999998776
Q ss_pred cc
Q 030558 166 GS 167 (175)
Q Consensus 166 ~~ 167 (175)
.+
T Consensus 267 ~~ 268 (312)
T 3vc1_A 267 VD 268 (312)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-21 Score=138.74 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=109.0
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
.+|||+|||+|.++..+++..+.+|+++|+|+.++ +.++++....+...++..+..+.. .+++.+++||+|++..+++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMN-EIALKNIADANLNDRIQIVQGDVH-NIPIEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECBTT-BCSSCTTCEEEEEEESCGG
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHhccccCceEEEEcCHH-HCCCCcccccEEEECchHh
Confidence 48999999999999999887677899999999998 777777777666444455544443 3456678999999999996
Q ss_pred CcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-----CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 90 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
+.. ++..+++++.++|+|||.+++......... .......+.|...........+...+.++++++||++.+
T Consensus 123 ~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 123 FWE---DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp GCS---CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred hcc---CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 653 455999999999999999988632221100 000000011111111112222458899999999997544
Q ss_pred ---ecceEEEEecC
Q 030558 165 ---LGSRVYCIKLR 175 (175)
Q Consensus 165 ---~~~~~~~i~~~ 175 (175)
..+..|++..|
T Consensus 200 ~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 200 IILGDEGFWIIISK 213 (219)
T ss_dssp EEEETTEEEEEEBC
T ss_pred EEecCCceEEEEec
Confidence 35667766654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-21 Score=141.97 Aligned_cols=156 Identities=9% Similarity=0.010 Sum_probs=107.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++..+.+|+++|+|+.++ +.++++....+...++..+..+. .++ +++||+|++.
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~---~~~-~~~fD~v~~~ 144 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQY-AHDKAMFDEVDSPRRKEVRIQGW---EEF-DEPVDRIVSL 144 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHH-HHHHHHHHHSCCSSCEEEEECCG---GGC-CCCCSEEEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECCH---HHc-CCCccEEEEc
Confidence 456789999999999999999988678999999999998 77777777766643444444333 333 6899999999
Q ss_pred CcccCcccc------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCC---------ceEeee-eccCCCcchh
Q 030558 86 DILLYVKQY------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP---------AFLMSW-RRRIGKEDET 149 (175)
Q Consensus 86 ~~l~~~~~~------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~ 149 (175)
.++.+.++. .+...+++++.++|||||++++................. .|...+ .......+..
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~ 224 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRIS 224 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHH
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHH
Confidence 999776543 566799999999999999999975433221100000000 111100 0111122358
Q ss_pred HHHHHHHHcCCeeEEec
Q 030558 150 IFFTSCENAGLEVKHLG 166 (175)
Q Consensus 150 ~~~~~~~~~g~~~~~~~ 166 (175)
.+.+.++++||+++++.
T Consensus 225 ~~~~~l~~aGf~~~~~~ 241 (302)
T 3hem_A 225 QVDYYSSNAGWKVERYH 241 (302)
T ss_dssp HHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHhCCcEEEEEE
Confidence 89999999999988764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-21 Score=141.22 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=107.3
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||+|||+|..+..+++..+.+|+++|+|+.++ +.++++....+...++..+..+.. .+++++++||+|++
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~ 156 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWS 156 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHH-HHHHHHHHhcCCCcceEEEEcCcc-cCCCCCCCEeEEEe
Confidence 3456889999999999999999887678999999999998 666666655555334444444432 35666789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..+++|..+ ...+++++.++|||||.+++..+......... ....+...+. .....+...+.++++++||++.+
T Consensus 157 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~aGf~~~~ 230 (297)
T 2o57_A 157 QDAFLHSPD---KLKVFQECARVLKPRGVMAITDPMKEDGIDKS--SIQPILDRIK-LHDMGSLGLYRSLAKECGLVTLR 230 (297)
T ss_dssp ESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG--GGHHHHHHHT-CSSCCCHHHHHHHHHHTTEEEEE
T ss_pred cchhhhcCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH--HHHHHHHHhc-CCCCCCHHHHHHHHHHCCCeEEE
Confidence 999966654 55999999999999999999854432211100 0000000000 00112357889999999999877
Q ss_pred ecc
Q 030558 165 LGS 167 (175)
Q Consensus 165 ~~~ 167 (175)
+.+
T Consensus 231 ~~~ 233 (297)
T 2o57_A 231 TFS 233 (297)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-21 Score=138.01 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=107.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|..+..+++..+.+|+++|+|+.++ +.++++....+...++..+..+. ..+++.+++||+|++.
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~ 121 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFI-EIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSE 121 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEec
Confidence 446789999999999999999998666999999999998 77777777777644455555555 3455667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccC-CCcchhHHHHHHHHcCCeeEE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI-GKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~ 164 (175)
.++++. + ...+++++.++|+|||++++.......... .......+...+ ...+...+.+.++++||++..
T Consensus 122 ~~l~~~-~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 122 GAIYNI-G---FERGMNEWSKYLKKGGFIAVSEASWFTSER-----PAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp SCSCCC-C---HHHHHHHHHTTEEEEEEEEEEEEEESSSCC-----CHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred ChHhhc-C---HHHHHHHHHHHcCCCcEEEEEEeeccCCCC-----hHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 999555 3 459999999999999999998543211110 000000011111 112458899999999999876
Q ss_pred e
Q 030558 165 L 165 (175)
Q Consensus 165 ~ 165 (175)
.
T Consensus 193 ~ 193 (257)
T 3f4k_A 193 H 193 (257)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=136.52 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=107.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++..+.+|+|+|+|+.++ +.++++....+...++..+..+. ..+++.+++||+|++.
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~ 121 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSE 121 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEc
Confidence 456889999999999999999998566999999999998 77777777766644455555555 3345667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccC-CCcchhHHHHHHHHcCCeeEE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI-GKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~ 164 (175)
.++++. ++..+++++.++|+|||.+++.......... .......+...+ ...+...+.+.++++||++.+
T Consensus 122 ~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 122 GAIYNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDER-----PAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA 192 (267)
T ss_dssp SCGGGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCC-----CHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred CCceec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCC-----hHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence 999555 3459999999999999999987543211110 000000010111 122458899999999999876
Q ss_pred ec
Q 030558 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 193 ~~ 194 (267)
T 3kkz_A 193 TF 194 (267)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=139.92 Aligned_cols=151 Identities=18% Similarity=0.167 Sum_probs=104.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||||||+|.++..+++. +.+|+++|+|+.++ +.++++....+....+..+..+..+..++.+++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMI-DRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999887 88999999999998 777777766555334444544444333356789999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCceEeeeeccCCCcchhHHHHH
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAFLMSWRRRIGKEDETIFFTS 154 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (175)
+++.. +...+++++.++|+|||.+++..+...... ........ ... ......+..++.++
T Consensus 146 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~l~~~ 218 (285)
T 4htf_A 146 LEWVA---DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKK-RTL---SPDYPRDPTQVYLW 218 (285)
T ss_dssp GGGCS---CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC-----C---CCSCCBCHHHHHHH
T ss_pred hhccc---CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcccccc-ccC---CCCCCCCHHHHHHH
Confidence 96654 445999999999999999998754322100 01100000 000 01111235899999
Q ss_pred HHHcCCeeEEecc
Q 030558 155 CENAGLEVKHLGS 167 (175)
Q Consensus 155 ~~~~g~~~~~~~~ 167 (175)
++++||++.++..
T Consensus 219 l~~aGf~v~~~~~ 231 (285)
T 4htf_A 219 LEEAGWQIMGKTG 231 (285)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHCCCceeeeee
Confidence 9999999887654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=134.37 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=101.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.++ +.++++... .+..+..+..+. ..+++||+|++.+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~-----~v~~~~~d~~~~--~~~~~fD~v~~~~ 111 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAI-SHAQGRLKD-----GITYIHSRFEDA--QLPRRYDNIVLTH 111 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHH-HHHHHHSCS-----CEEEEESCGGGC--CCSSCEEEEEEES
T ss_pred cCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHH-HHHHHhhhC-----CeEEEEccHHHc--CcCCcccEEEEhh
Confidence 46789999999999999999876 67999999999998 565544322 223333333222 3567999999999
Q ss_pred cccCcccchHHHHHHHHHH-hhcCCCCceeeccccCCCCC------CCCCCCCCce-----EeeeeccCCCcchhHHHHH
Q 030558 87 ILLYVKQYSNLIKSLSVLL-KSYKPKDSQVGHLTKNEQGE------GTEGLPWPAF-----LMSWRRRIGKEDETIFFTS 154 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~-~~l~pgG~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 154 (175)
+++|.. +...+++++. ++|||||.+++..+...... .........+ ...+.+. .+..++.++
T Consensus 112 ~l~~~~---~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 185 (250)
T 2p7i_A 112 VLEHID---DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCT---YALDTLERD 185 (250)
T ss_dssp CGGGCS---SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCC---CCHHHHHHH
T ss_pred HHHhhc---CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccccccccccc---CCHHHHHHH
Confidence 996655 3459999999 99999999999865443211 0111110000 0001111 235899999
Q ss_pred HHHcCCeeEEecceEE
Q 030558 155 CENAGLEVKHLGSRVY 170 (175)
Q Consensus 155 ~~~~g~~~~~~~~~~~ 170 (175)
++++||++.++....|
T Consensus 186 l~~~Gf~~~~~~~~~~ 201 (250)
T 2p7i_A 186 ASRAGLQVTYRSGIFF 201 (250)
T ss_dssp HHHTTCEEEEEEEEEE
T ss_pred HHHCCCeEEEEeeeEe
Confidence 9999999988865444
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=130.30 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=110.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCC-cceeeccCCC--CCCCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHSWGD--AFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+.... ...+.+..++ ..++.+++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAI-RLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHH-HHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46789999999999999999887 78999999999998 777766655444211 1122333322 3455678999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCC----------CCCCCCceEe--------e-eeccCC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT----------EGLPWPAFLM--------S-WRRRIG 144 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~----------~~~~~~~~~~--------~-~~~~~~ 144 (175)
+..++++..+......+++++.++|+|||.+++..+........ .......+.. . ..+.+
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF- 185 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB-
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC-
Confidence 99999777766777799999999999999999985433211100 0000001111 1 11222
Q ss_pred CcchhHHHHHHHHcCCeeEEecceEEEE
Q 030558 145 KEDETIFFTSCENAGLEVKHLGSRVYCI 172 (175)
Q Consensus 145 ~~~~~~~~~~~~~~g~~~~~~~~~~~~i 172 (175)
+..++.++++++||++..+.+..+..
T Consensus 186 --~~~~l~~ll~~aGf~~~~~~~~~~~~ 211 (235)
T 3sm3_A 186 --TEKELVFLLTDCRFEIDYFRVKELET 211 (235)
T ss_dssp --CHHHHHHHHHTTTEEEEEEEEEEEEC
T ss_pred --CHHHHHHHHHHcCCEEEEEEecceee
Confidence 35899999999999999887665543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=137.00 Aligned_cols=157 Identities=10% Similarity=0.037 Sum_probs=105.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.|+ +.++++....+. .++..+..+. ..+++++++||+|+++.
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l-~~a~~~~~~~~~-~~v~~~~~d~-~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDIL-KVARAFIEGNGH-QQVEYVQGDA-EQMPFTDERFHIVTCRI 111 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHTTC-CSEEEEECCC--CCCSCTTCEEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHH-HHHHHHHHhcCC-CceEEEEecH-HhCCCCCCCEEEEEEhh
Confidence 46789999999999999999887 56999999999998 666666665554 1233333333 23566778999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
+++++. +...+++++.++|+|||++++......... .........+ .. .......+..++.++++++||++..
T Consensus 112 ~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~aGf~~~~ 186 (260)
T 1vl5_A 112 AAHHFP---NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKE-RD-YSHHRAWKKSDWLKMLEEAGFELEE 186 (260)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHH-HC-TTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred hhHhcC---CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHh-cC-ccccCCCCHHHHHHHHHHCCCeEEE
Confidence 996665 445999999999999999998743221110 0000000000 00 0001112358899999999999888
Q ss_pred ecceEEEE
Q 030558 165 LGSRVYCI 172 (175)
Q Consensus 165 ~~~~~~~i 172 (175)
+....+.+
T Consensus 187 ~~~~~~~~ 194 (260)
T 1vl5_A 187 LHCFHKTF 194 (260)
T ss_dssp EEEEEEEE
T ss_pred EEEeeccC
Confidence 77665443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=128.54 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=98.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++.. . ..+..+.. .++ .+++||+|++..
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~---~----~~~~~d~~-~~~-~~~~fD~v~~~~ 110 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELA-AEASRRLG---R----PVRTMLFH-QLD-AIDAYDAVWAHA 110 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHT---S----CCEECCGG-GCC-CCSCEEEEEECS
T ss_pred CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHH-HHHHHhcC---C----ceEEeeec-cCC-CCCcEEEEEecC
Confidence 45789999999999999999887 78999999999998 66655541 1 22222222 233 567999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC-CeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG-LEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~ 165 (175)
++++.. .+++..+++++.++|+|||.+++............ ... +... .+...+.++++++| |++.++
T Consensus 111 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~----~~~~---~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 111 CLLHVP-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK---LAR----YYNY---PSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT---TSC----EECC---CCHHHHHHHHHHHCCCSEEEE
T ss_pred chhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc---cch----hccC---CCHHHHHHHHHhCCCcEEEEE
Confidence 995554 45778999999999999999999744332211110 000 0111 23589999999999 997776
Q ss_pred c
Q 030558 166 G 166 (175)
Q Consensus 166 ~ 166 (175)
.
T Consensus 180 ~ 180 (211)
T 3e23_A 180 E 180 (211)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=135.19 Aligned_cols=159 Identities=10% Similarity=0.115 Sum_probs=107.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+. ..+..+..+. ..+++.+++||+|++
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~~fD~v~~ 93 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMV-EVASSFAQEKGV-ENVRFQQGTA-ESLPFPDDSFDIITC 93 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHHTC-CSEEEEECBT-TBCCSCTTCEEEEEE
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCC-CCeEEEeccc-ccCCCCCCcEEEEEE
Confidence 4457889999999999999999887 56999999999998 666666655444 1233343333 345667789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
..+++++. ++..+++++.++|+|||.+++......... ............. ......+..++.++++++||++
T Consensus 94 ~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~aGf~~ 168 (239)
T 1xxl_A 94 RYAAHHFS---DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDP--SHVRESSLSEWQAMFSANQLAY 168 (239)
T ss_dssp ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCT--TCCCCCBHHHHHHHHHHTTEEE
T ss_pred CCchhhcc---CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccc--cccCCCCHHHHHHHHHHCCCcE
Confidence 99996665 445999999999999999998743321110 0000000000000 0011123588999999999998
Q ss_pred EEecceEEEE
Q 030558 163 KHLGSRVYCI 172 (175)
Q Consensus 163 ~~~~~~~~~i 172 (175)
..+....+.+
T Consensus 169 ~~~~~~~~~~ 178 (239)
T 1xxl_A 169 QDIQKWNLPI 178 (239)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEeecCcc
Confidence 8887665543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=136.66 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=103.8
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||+|||+|.++..+++..+.+|+++|+|+.++ +.++++.... ..+..+..+.. ..++++++||+|++
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~~~~~~d~~-~~~~~~~~fD~v~~ 126 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV-NMANERVSGN---NKIIFEANDIL-TKEFPENNFDLIYS 126 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHTCCSC---TTEEEEECCTT-TCCCCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHhhcC---CCeEEEECccc-cCCCCCCcEEEEeH
Confidence 3456789999999999999999887688999999999998 6655544332 22333333332 34566789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeee--eccCCCcchhHHHHHHHHcCCee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSW--RRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
..++++.. .++...+++++.++|+|||.+++..+...... . .......+ .......+...+.++++++||++
T Consensus 127 ~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 200 (266)
T 3ujc_A 127 RDAILALS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKE-N----WDDEFKEYVKQRKYTLITVEEYADILTACNFKN 200 (266)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-G----CCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-c----chHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeE
Confidence 99995552 36777999999999999999999854332200 0 00000000 01111224588999999999998
Q ss_pred EEec
Q 030558 163 KHLG 166 (175)
Q Consensus 163 ~~~~ 166 (175)
.+..
T Consensus 201 ~~~~ 204 (266)
T 3ujc_A 201 VVSK 204 (266)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=133.01 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=100.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++. +.+|+++|+|+.++ +.++++... ..+..+..+.. .+++++++||+|++..
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~----~~~~~~~~d~~-~~~~~~~~fD~v~~~~ 124 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMI-QKGKERGEG----PDLSFIKGDLS-SLPFENEQFEAIMAIN 124 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHTTTCB----TTEEEEECBTT-BCSSCTTCEEEEEEES
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhccc----CCceEEEcchh-cCCCCCCCccEEEEcC
Confidence 36789999999999999999887 78999999999998 565544311 23334433332 3456678999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
+++|.. +...+++++.++|+|||.+++............ ......... ......+..++.++++++||++.+..
T Consensus 125 ~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 125 SLEWTE---EPLRALNEIKRVLKSDGYACIAILGPTAKPREN--SYPRLYGKD-VVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp CTTSSS---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGG--GGGGGGTCC-CSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hHhhcc---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhh--hhhhhcccc-ccccCCCHHHHHHHHHHcCCEEEEee
Confidence 996654 445999999999999999999864432211000 000000000 01111235789999999999988764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=127.86 Aligned_cols=139 Identities=15% Similarity=0.095 Sum_probs=98.4
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++.. .+..+..+.. .+++.+++||+|++..++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~------~~~~~~~d~~-~~~~~~~~fD~v~~~~~l 112 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLV-ELARQTHP------SVTFHHGTIT-DLSDSPKRWAGLLAWYSL 112 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHH-HHHHHHCT------TSEEECCCGG-GGGGSCCCEEEEEEESSS
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHhCC------CCeEEeCccc-ccccCCCCeEEEEehhhH
Confidence 789999999999999999887 78999999999998 55554411 2233333332 234567899999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
++.. .+++..+++++.++|+|||.+++......... .+..... ....+ +...+.++++++||++.++.
T Consensus 113 ~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~-----~~~~~---~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 113 IHMG-PGELPDALVALRMAVEDGGGLLMSFFSGPSLE-PMYHPVA-----TAYRW---PLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp TTCC-TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE-EECCSSS-----CEEEC---CHHHHHHHHHHTTEEEEEEE
T ss_pred hcCC-HHHHHHHHHHHHHHcCCCcEEEEEEccCCchh-hhhchhh-----hhccC---CHHHHHHHHHHCCCcEEEEE
Confidence 6554 45677999999999999999999754432211 0000000 00111 35889999999999988764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=128.22 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=101.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++.. ..+|+++|+|+.++ +.++++....+.. ++..+..+. ...++.+++||+|+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~-~~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLK-NVEVLKSEE-NKIPLPDNTVDFIF 111 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEECBT-TBCSSCSSCEEEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeccc-ccCCCCCCCeeEEE
Confidence 3467899999999999999998875 46899999999998 6666666655542 233333333 23456678999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+..++++.. +...+++++.++|+|||.+++............ .....+ +..++.+.++++||++.
T Consensus 112 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~---~~~~~~~~l~~~Gf~~~ 176 (219)
T 3dh0_A 112 MAFTFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP---------PPEEVY---SEWEVGLILEDAGIRVG 176 (219)
T ss_dssp EESCGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC---------CGGGSC---CHHHHHHHHHHTTCEEE
T ss_pred eehhhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCC---------chhccc---CHHHHHHHHHHCCCEEE
Confidence 999995554 456999999999999999998744332221100 011112 35889999999999866
Q ss_pred Ee
Q 030558 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
+.
T Consensus 177 ~~ 178 (219)
T 3dh0_A 177 RV 178 (219)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=131.73 Aligned_cols=152 Identities=11% Similarity=0.128 Sum_probs=101.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++....+|+++|+|+.++ +.++++.. ...+..+..+. ..+++.+++||+|++.
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~----~~~~~~~~~d~-~~~~~~~~~fD~v~~~ 115 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERML-TEAKRKTT----SPVVCYEQKAI-EDIAIEPDAYNVVLSS 115 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHCC----CTTEEEEECCG-GGCCCCTTCEEEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhhc----cCCeEEEEcch-hhCCCCCCCeEEEEEc
Confidence 346889999999999999999887444899999999998 66655543 12233443333 2345667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------------CCCCCCCCceEee----eecc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------------GTEGLPWPAFLMS----WRRR 142 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~----~~~~ 142 (175)
.++++. +++..+++++.++|+|||.+++......... ..++... ..... ....
T Consensus 116 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 191 (253)
T 3g5l_A 116 LALHYI---ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNES-MRTSHFLGEDVQK 191 (253)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCC-EEEEEETTEEEEE
T ss_pred hhhhhh---hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccc-eEEEeeccccCcc
Confidence 999555 3456999999999999999999733221000 0000000 00000 0011
Q ss_pred CCCcchhHHHHHHHHcCCeeEEecce
Q 030558 143 IGKEDETIFFTSCENAGLEVKHLGSR 168 (175)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 168 (175)
+ ..+..++.++++++||+++++.+.
T Consensus 192 ~-~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 192 Y-HRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp E-CCCHHHHHHHHHHTTEEEEEEECC
T ss_pred E-ecCHHHHHHHHHHcCCeeeeeecC
Confidence 1 114589999999999999887653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=136.65 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=98.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC--------------------------
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-------------------------- 59 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-------------------------- 59 (175)
..++.+|||||||+|.++..++.....+|+|+|+|+.|+ +.++++...+....
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l-~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHH-HHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 356789999999999988777666344799999999998 66655544321100
Q ss_pred --Ccc-eeeccCCCCCCC---CCCCccEEEeCCcccCc-ccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCC
Q 030558 60 --ALP-HIKHSWGDAFPI---PNPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPW 132 (175)
Q Consensus 60 --~~~-~~~~~~~~~~~~---~~~~fD~i~~~~~l~~~-~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~ 132 (175)
.+. .+..+..+..++ ..++||+|+++.++++. .+.+++..++++++++|||||.|++........ +....
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~---~~~g~ 208 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS---YMVGK 208 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE---EEETT
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc---ceeCC
Confidence 001 223333332232 35689999999998553 345678899999999999999999974221100 00000
Q ss_pred CceEeeeeccCCCcchhHHHHHHHHcCCeeEEecc
Q 030558 133 PAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
..+... ..+.+++.+.++++||++.++..
T Consensus 209 ----~~~~~~--~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 209 ----REFSCV--ALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp ----EEEECC--CCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ----eEeecc--ccCHHHHHHHHHHCCCEEEEEee
Confidence 001111 11357899999999999877743
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=128.89 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=80.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCC----CcceeeccCCCCCCCCCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITP----ALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
.++.+|||+|||+|.++..+++... .+|+++|+|+.++ +.++++....+... .+..+..+. ...+..+++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~ 105 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVL-ERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDA 105 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHH-HHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCE
Confidence 4678999999999999999988643 6899999999998 67666665544321 233333333 233445679999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++..++.+.. .+++..+++++.++|+|||.++.+
T Consensus 106 V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 106 ATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEc
Confidence 99999995553 455679999999999999955544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=131.21 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=98.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
.++++|||||||+|.++..+++. +.+|+|+|+|+.++ +.++.+ +..+..+..+.. ++.+++||+|++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMI-KFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHH-HHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHH-HHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 46789999999999999999887 78999999999998 555543 122322222222 5567899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.++.+.. .+++..+++++.++|||||.+++..+......... ..+.. . ......+...+.++++++||++..+
T Consensus 109 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~~~~~-~-~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 109 HFVEHLD-PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLI----NFYID-P-THKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHH----HHTTS-T-TCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CchhhCC-cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHH----HHhcC-c-cccccCCHHHHHHHHHHCCCeEEEE
Confidence 9996555 45667999999999999999999865432111000 00000 0 0011113488999999999997765
Q ss_pred c
Q 030558 166 G 166 (175)
Q Consensus 166 ~ 166 (175)
.
T Consensus 182 ~ 182 (240)
T 3dli_A 182 E 182 (240)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=128.41 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=97.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCC-CCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPI-PNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~fD~i~ 83 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++ . .......+..+ ..+. ..++||+|+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~---~----~~~~~~~~~~~~~~~~~~~~~~fD~v~ 121 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLV-DAARAA---G----AGEVHLASYAQLAEAKVPVGKDYDLIC 121 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHH-HHHHHT---C----SSCEEECCHHHHHTTCSCCCCCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHH-HHHHHh---c----ccccchhhHHhhcccccccCCCccEEE
Confidence 35789999999999999999887 78999999999998 555544 1 12233322221 1232 344699999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEe-----------eeeccCCCcchhHHH
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLM-----------SWRRRIGKEDETIFF 152 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 152 (175)
+..+++ . +++..+++++.++|+|||.+++..+.......... ...|.. .....+ .+..++.
T Consensus 122 ~~~~l~-~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 193 (227)
T 3e8s_A 122 ANFALL-H---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDY--QDGWREESFAGFAGDWQPMPWYF--RTLASWL 193 (227)
T ss_dssp EESCCC-S---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCC--SCEEEEECCTTSSSCCCCEEEEE--CCHHHHH
T ss_pred ECchhh-h---hhHHHHHHHHHHHhCCCeEEEEEecCccccCcccc--ccccchhhhhccccCcccceEEE--ecHHHHH
Confidence 999984 3 34559999999999999999998655433221100 001110 000111 1358999
Q ss_pred HHHHHcCCeeEEecc
Q 030558 153 TSCENAGLEVKHLGS 167 (175)
Q Consensus 153 ~~~~~~g~~~~~~~~ 167 (175)
++++++||++.++.+
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999988754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=129.36 Aligned_cols=152 Identities=18% Similarity=0.072 Sum_probs=97.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCC----CcceeeccCCCCCCCCCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITP----ALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
.++++|||+|||+|.++..+++... .+|+++|+|+.++ +.++++....+... ++..+..+. ...+...++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~ 105 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSL-EIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDA 105 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHH-HHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHH-HHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCE
Confidence 4678999999999999999988643 6899999999998 77777766555421 233333332 223344578999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCC-CCCCCCCCCceEeeeeccCCCcchhHHH----HHHH
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG-EGTEGLPWPAFLMSWRRRIGKEDETIFF----TSCE 156 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 156 (175)
|++..++++.. .+++..+++++.++|+|||.++++....... ...+.. .......+...+ +..++. ++++
T Consensus 106 v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~~~~~~~ 180 (217)
T 3jwh_A 106 ATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPA-GKLRHKDHRFEW---TRSQFQNWANKITE 180 (217)
T ss_dssp EEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC------------CCSCB---CHHHHHHHHHHHHH
T ss_pred EeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccc-cccccccccccc---CHHHHHHHHHHHHH
Confidence 99999996553 4566799999999999999666552211000 000100 000001111112 235666 8889
Q ss_pred HcCCeeEEe
Q 030558 157 NAGLEVKHL 165 (175)
Q Consensus 157 ~~g~~~~~~ 165 (175)
++||+++..
T Consensus 181 ~~Gf~v~~~ 189 (217)
T 3jwh_A 181 RFAYNVQFQ 189 (217)
T ss_dssp HSSEEEEEC
T ss_pred HcCceEEEE
Confidence 999998766
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=131.99 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=79.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC-
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD- 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~- 86 (175)
++.+|||||||+|.++..+++. +.+|+++|+|+.++ +.++++.. .+..+..+..+ ++. +++||+|++..
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~------~~~~~~~d~~~-~~~-~~~fD~v~~~~~ 119 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS-FGTVEGLELSADML-AIARRRNP------DAVLHHGDMRD-FSL-GRRFSAVTCMFS 119 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHH-HHHHHHCT------TSEEEECCTTT-CCC-SCCEEEEEECTT
T ss_pred CCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhCC------CCEEEECChHH-CCc-cCCcCEEEEcCc
Confidence 5689999999999999999887 77999999999998 55554432 22333333322 233 67999999997
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++.+..+.+++..+++++.++|+|||.+++...
T Consensus 120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 120 SIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 887776667888999999999999999999743
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-20 Score=132.77 Aligned_cols=145 Identities=13% Similarity=0.159 Sum_probs=100.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++....+|+++|+|+.++ +.++++.... ..+..+..+.. .+++.+++||+|++..
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~---~~~~~~~~d~~-~~~~~~~~fD~v~~~~ 166 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGM---PVGKFILASME-TATLPPNTYDLIVIQW 166 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTTS---SEEEEEESCGG-GCCCCSSCEEEEEEES
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHH-HHHHHHhccC---CceEEEEccHH-HCCCCCCCeEEEEEcc
Confidence 35789999999999999999887656799999999998 6666554432 12233333332 2456677999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
++++.. .+++..+++++.++|+|||.+++......... +...........+...+.++++++||++.++.
T Consensus 167 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 167 TAIYLT-DADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred hhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 996554 25677999999999999999999754321111 11100000001135889999999999987764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-19 Score=126.37 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=99.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.+++ .+. ..+..+..+..+. +.+++||+|++.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~-~~a~~----~~~-~~~~~~~~d~~~~--~~~~~~D~v~~~ 114 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMI-AEAGR----HGL-DNVEFRQQDLFDW--TPDRQWDAVFFA 114 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHH-HHHGG----GCC-TTEEEEECCTTSC--CCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHh----cCC-CCeEEEecccccC--CCCCceeEEEEe
Confidence 345689999999999999999888 78999999999998 55544 222 2233443333322 467799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCC-CCceEeeeec-------cCCCcchhHHHHHHH
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLP-WPAFLMSWRR-------RIGKEDETIFFTSCE 156 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~ 156 (175)
.++++.. .+.+..+++++.++|+|||.+++......... ...... ...+...... .....+..++.++++
T Consensus 115 ~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 193 (218)
T 3ou2_A 115 HWLAHVP-DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLT 193 (218)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHH
T ss_pred chhhcCC-HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHH
Confidence 9996555 34467999999999999999999855442211 111100 0011111000 011124588999999
Q ss_pred HcCCeeEEec
Q 030558 157 NAGLEVKHLG 166 (175)
Q Consensus 157 ~~g~~~~~~~ 166 (175)
++||+++...
T Consensus 194 ~aGf~v~~~~ 203 (218)
T 3ou2_A 194 ALGWSCSVDE 203 (218)
T ss_dssp HTTEEEEEEE
T ss_pred HCCCEEEeee
Confidence 9999976553
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=129.23 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=102.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++.. ..+..+..+.. ..++. ++||+|++..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~-----~~~~~~~~d~~-~~~~~-~~fD~v~~~~~ 115 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMR-MIAKEKLP-----KEFSITEGDFL-SFEVP-TSIDTIVSTYA 115 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHSC-----TTCCEESCCSS-SCCCC-SCCSEEEEESC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHH-HHHHHhCC-----CceEEEeCChh-hcCCC-CCeEEEEECcc
Confidence 6789999999999999999887 78999999999998 56555433 12233333332 23444 89999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC------CCC-CCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG------TEG-LPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
+++..+ +....+++++.++|+|||.+++..+....... ... ...........+.+ ..+..++.++++++||
T Consensus 116 l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aGf 193 (220)
T 3hnr_A 116 FHHLTD-DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEY-YTRIPVMQTIFENNGF 193 (220)
T ss_dssp GGGSCH-HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSC-CCBHHHHHHHHHHTTE
T ss_pred hhcCCh-HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhh-cCCHHHHHHHHHHCCC
Confidence 955543 33345999999999999999997533321110 000 00000000001111 1145899999999999
Q ss_pred eeEEe--cceEEEEec
Q 030558 161 EVKHL--GSRVYCIKL 174 (175)
Q Consensus 161 ~~~~~--~~~~~~i~~ 174 (175)
++... .+..|+++.
T Consensus 194 ~v~~~~~~~~~w~~~~ 209 (220)
T 3hnr_A 194 HVTFTRLNHFVWVMEA 209 (220)
T ss_dssp EEEEEECSSSEEEEEE
T ss_pred EEEEeeccceEEEEee
Confidence 87655 577777764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=130.09 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=99.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+.. ..+.+..++.... .+++||+|++..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~fD~v~~~~ 140 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP-ERFVVGLDISESAL-AKANETYGSSPKA---EYFSFVKEDVFTWRPTELFDLIFDYV 140 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHH-HHHHHHHTTSGGG---GGEEEECCCTTTCCCSSCEEEEEEES
T ss_pred CCCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHH-HHHHHHhhccCCC---cceEEEECchhcCCCCCCeeEEEECh
Confidence 4569999999999999999775 77899999999998 6666665543221 2233333333322 345899999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
++++.. .++...+++++.++|+|||.+++..+......... + +. .+..++.++++++||++.++.
T Consensus 141 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~-~~---------~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 141 FFCAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP----P-YK---------VDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp STTTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS----S-CC---------CCHHHHHHHHGGGTEEEEEEE
T ss_pred hhhcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC----C-cc---------CCHHHHHHHHHHcCCeEEEEE
Confidence 985554 45777999999999999999988755443221111 0 00 135889999999999988764
Q ss_pred c
Q 030558 167 S 167 (175)
Q Consensus 167 ~ 167 (175)
.
T Consensus 206 ~ 206 (235)
T 3lcc_A 206 E 206 (235)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=131.25 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=96.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeC-ChHHHHHHHHHHHh-----hCCCC----CCcceeeccCCCCCC-C
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDY-NDQEIEDNIAYNST-----TNGIT----PALPHIKHSWGDAFP-I 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~-s~~~l~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~-~ 74 (175)
..++++|||||||+|.+++.+++....+|+++|+ |+.++ +.++++.. .++.. .++....++|++... .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~-~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEIL-NSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHH-HHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHH-HHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 4578899999999999999998874448999999 89998 78887873 33331 234555566776432 2
Q ss_pred ----CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcC---C--CCceeeccccCCCCCCCCCCCCCceEeeeeccCCC
Q 030558 75 ----PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYK---P--KDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGK 145 (175)
Q Consensus 75 ----~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~---p--gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (175)
.+++||+|++++++|+.. +...+++.+.++|+ | ||++++..... .... .
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~------------------~~~~-~ 213 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTHH------------------RPHL-A 213 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC-------------------------
T ss_pred HhhccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEee------------------eccc-c
Confidence 357899999999996654 45589999999999 9 99877641111 0010 0
Q ss_pred cchhHHHHHHHHcC-CeeEEe
Q 030558 146 EDETIFFTSCENAG-LEVKHL 165 (175)
Q Consensus 146 ~~~~~~~~~~~~~g-~~~~~~ 165 (175)
.....|++.+++.| |+++.+
T Consensus 214 ~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 214 ERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp --CTHHHHHHHHSTTEEEEEE
T ss_pred hhHHHHHHHHHhcCCEEEEEe
Confidence 11267888899999 988877
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=129.32 Aligned_cols=142 Identities=9% Similarity=0.061 Sum_probs=91.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCC-----------CCCCcceeeccCCCCCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG-----------ITPALPHIKHSWGDAFPIP 75 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 75 (175)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|+ +.++++..... ...++..+..+.. .+++.
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-ALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-SSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHH-HHHHHHccCCcccccccccccccCCccEEEECccc-cCCcc
Confidence 46789999999999999999987 78999999999998 55554432200 0112233332222 23333
Q ss_pred C-CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHH
Q 030558 76 N-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTS 154 (175)
Q Consensus 76 ~-~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (175)
+ ++||+|++..++++.. .++...++++++++|||||++++.+...... .. ..+. +. .+..++.++
T Consensus 98 ~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~--~~--~~~~--------~~-~~~~el~~~ 163 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQA--LL--EGPP--------FS-VPQTWLHRV 163 (203)
T ss_dssp HHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSS--SS--SSCC--------CC-CCHHHHHHT
T ss_pred cCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCcc--cc--CCCC--------CC-CCHHHHHHH
Confidence 3 6899999988875443 4566789999999999999855543222111 00 0000 10 124677777
Q ss_pred HHHcCCeeEEec
Q 030558 155 CENAGLEVKHLG 166 (175)
Q Consensus 155 ~~~~g~~~~~~~ 166 (175)
+++ ||+++.+.
T Consensus 164 ~~~-gf~i~~~~ 174 (203)
T 1pjz_A 164 MSG-NWEVTKVG 174 (203)
T ss_dssp SCS-SEEEEEEE
T ss_pred hcC-CcEEEEec
Confidence 777 88877653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=133.77 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=107.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHH--HhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLR--KAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~--~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||||||+|..+..++ ...+.+|+++|+|+.++ +.++++....+...++..+..+..+ .++. ++||+|+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~fD~v~ 192 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL-DGATRLAAGHALAGQITLHRQDAWK-LDTR-EGYDLLT 192 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHH-HHHHHHHTTSTTGGGEEEEECCGGG-CCCC-SCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECchhc-CCcc-CCeEEEE
Confidence 3567899999999999999984 33367899999999998 7777777766653334444444332 3444 8999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCC--ce------------Eee-eeccCCCcch
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP--AF------------LMS-WRRRIGKEDE 148 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~--~~------------~~~-~~~~~~~~~~ 148 (175)
++.++++.++......+++++.++|+|||.+++............. .+. .+ ... ...+....+.
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTH 271 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCCH
Confidence 9999977777776667999999999999999997544332221111 000 00 000 0001011245
Q ss_pred hHHHHHHHHcCCeeEEec
Q 030558 149 TIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 149 ~~~~~~~~~~g~~~~~~~ 166 (175)
.++.++++++||++.++.
T Consensus 272 ~~~~~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 272 AQTRAQLEEAGFTDLRFE 289 (305)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEE
Confidence 899999999999987765
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-20 Score=137.10 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=98.4
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCC------------------------
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT------------------------ 58 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~------------------------ 58 (175)
+...++++|||||||+|.++..+++.. +.+|+|+|+|+.++ +.++++.......
T Consensus 42 ~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T 3g07_A 42 PEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI-HSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTV 120 (292)
T ss_dssp GGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHH-HHHHHTC------------------------------
T ss_pred hhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345678999999999999999999875 57899999999998 6666554433211
Q ss_pred ---------------------------------CCcceeeccCCCCC----CCCCCCccEEEeCCcccCcc---cchHHH
Q 030558 59 ---------------------------------PALPHIKHSWGDAF----PIPNPDWDLILASDILLYVK---QYSNLI 98 (175)
Q Consensus 59 ---------------------------------~~~~~~~~~~~~~~----~~~~~~fD~i~~~~~l~~~~---~~~~~~ 98 (175)
.++.....++.+.. ++.+++||+|++..++.+.. ..+.+.
T Consensus 121 ~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~ 200 (292)
T 3g07_A 121 RKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK 200 (292)
T ss_dssp ---------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred cccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHH
Confidence 12233333332211 23567999999999984443 455788
Q ss_pred HHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHH--cCCeeEEe
Q 030558 99 KSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCEN--AGLEVKHL 165 (175)
Q Consensus 99 ~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~ 165 (175)
.++++++++|+|||.+++.......... ...........+..... .+.+|.+++.+ +||...++
T Consensus 201 ~~l~~~~~~LkpGG~lil~~~~~~~y~~-~~~~~~~~~~~~~~~~~--~p~~~~~~L~~~~~GF~~~~~ 266 (292)
T 3g07_A 201 RMFRRIYRHLRPGGILVLEPQPWSSYGK-RKTLTETIYKNYYRIQL--KPEQFSSYLTSPDVGFSSYEL 266 (292)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCHHHHHT-TTTSCHHHHHHHHHCCC--CGGGHHHHHTSTTTCCCEEEE
T ss_pred HHHHHHHHHhCCCcEEEEecCCchhhhh-hhcccHHHHhhhhcEEE--cHHHHHHHHHhcCCCceEEEE
Confidence 9999999999999999886322110000 00000011111111111 14889999998 99965444
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=139.47 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=101.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhC-----C-C-CCCcceeeccCCCC--C--
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN-----G-I-TPALPHIKHSWGDA--F-- 72 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~-----~-~-~~~~~~~~~~~~~~--~-- 72 (175)
..++.+|||||||+|..+..+++.. +.+|+++|+|+.++ +.++++.... + . ..++..+..+..+. .
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQL-EVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHH-HHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 5678999999999999999998874 56899999999998 6666555432 1 1 12334444444322 1
Q ss_pred -CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCc-eEeeeeccCCCcchhH
Q 030558 73 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA-FLMSWRRRIGKEDETI 150 (175)
Q Consensus 73 -~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 150 (175)
++++++||+|+++.++++.. +...+++++.++|||||++++.................. +...... ..+..+
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 233 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGG---ALYLED 233 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTT---CCBHHH
T ss_pred CCCCCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhccccc---CCCHHH
Confidence 66778999999999995554 455999999999999999998743332111000000000 0000001 123488
Q ss_pred HHHHHHHcCCeeEEec
Q 030558 151 FFTSCENAGLEVKHLG 166 (175)
Q Consensus 151 ~~~~~~~~g~~~~~~~ 166 (175)
+.++++++||++.++.
T Consensus 234 ~~~ll~~aGF~~v~~~ 249 (383)
T 4fsd_A 234 FRRLVAEAGFRDVRLV 249 (383)
T ss_dssp HHHHHHHTTCCCEEEE
T ss_pred HHHHHHHCCCceEEEE
Confidence 9999999999866543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=131.24 Aligned_cols=155 Identities=8% Similarity=0.049 Sum_probs=104.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||||||+|.++..+++..+.+|+++|+|+.++ +.++++....+....+..+..+. .+++ ++||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~---~~~~-~~fD~v~~~ 136 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQA-NHVQQLVANSENLRSKRVLLAGW---EQFD-EPVDRIVSI 136 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTCCCCSCEEEEESCG---GGCC-CCCSEEEEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHH-HHHHHHHHhcCCCCCeEEEECCh---hhCC-CCeeEEEEe
Confidence 456789999999999999999866688999999999998 77776766655533344433333 2333 889999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC----CCCC-----CCCceEeee-eccCCCcchhHHHHHH
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG----TEGL-----PWPAFLMSW-RRRIGKEDETIFFTSC 155 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~ 155 (175)
.++.|.. .++...+++++.++|||||.+++.......... .... ....+...+ .......+..++.+++
T Consensus 137 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 215 (287)
T 1kpg_A 137 GAFEHFG-HERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECA 215 (287)
T ss_dssp SCGGGTC-TTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHH
T ss_pred CchhhcC-hHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHH
Confidence 9995553 246679999999999999999997544322110 0000 000000000 0000112468899999
Q ss_pred HHcCCeeEEec
Q 030558 156 ENAGLEVKHLG 166 (175)
Q Consensus 156 ~~~g~~~~~~~ 166 (175)
+++||++.++.
T Consensus 216 ~~aGf~~~~~~ 226 (287)
T 1kpg_A 216 SANGFTVTRVQ 226 (287)
T ss_dssp HTTTCEEEEEE
T ss_pred HhCCcEEEEEE
Confidence 99999988764
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=128.58 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=100.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+ ++..+..+.. ..++. ++||+|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~-~~~~~-~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML-EIAKNRFRGNL---KVKYIEADYS-KYDFE-EKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTCSCT---TEEEEESCTT-TCCCC-SCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHhhccCC---CEEEEeCchh-ccCCC-CCceEEEE
Confidence 3467899999999999999998876 67899999999998 66665544322 2333333332 22333 79999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC----------------CCCCCC-CCceEeeeeccCCCcc
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE----------------GTEGLP-WPAFLMSWRRRIGKED 147 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~ 147 (175)
..++++.. .+....+++++.++|+|||.+++......... ..+... ...+.... ......+
T Consensus 116 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 193 (234)
T 3dtn_A 116 ALSIHHLE-DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERS-KLDKDIE 193 (234)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC-----CCCCCB
T ss_pred eCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhc-ccccccC
Confidence 99995553 44555799999999999999998743322111 000000 00000000 1111123
Q ss_pred hhHHHHHHHHcCCeeEEecc
Q 030558 148 ETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~~ 167 (175)
..++.++++++||+..++.-
T Consensus 194 ~~~~~~ll~~aGF~~v~~~~ 213 (234)
T 3dtn_A 194 MNQQLNWLKEAGFRDVSCIY 213 (234)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCceeeee
Confidence 58899999999999887643
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=129.61 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=100.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||||||+|.++..+++....+|+++|+|+.++ +.++++....+. ..+..+..+. ...++.+++||+|++..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGK-RVRNYFCCGL-QDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGG-GEEEEEECCG-GGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHH-HHHHHHhhhcCC-ceEEEEEcCh-hhcCCCCCCEEEEEEcch
Confidence 5789999999999999998887666899999999998 666666544321 1122333332 234455668999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
+++.. .+....+++++.++|+|||++++....... .. +.......+ ..+..++.++++++||++.+..
T Consensus 156 l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~-------~~~~~~~~~-~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 156 IGHLT-DQHLAEFLRRCKGSLRPNGIIVIKDNMAQE--GV-------ILDDVDSSV-CRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEBSS--SE-------EEETTTTEE-EEBHHHHHHHHHHTTCCEEEEE
T ss_pred hhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEccCCC--cc-------eecccCCcc-cCCHHHHHHHHHHcCCeEEEee
Confidence 85554 344669999999999999999997544322 00 000000000 1145889999999999987774
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=133.96 Aligned_cols=110 Identities=9% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC--CCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT--PALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
++.+|||||||+|.++..+++. +.+|+++|+|+.++ +.++++....+.. .++..+..+..+ +++ +++||+|++.
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVL-AAFRKRLAEAPADVRDRCTLVQGDMSA-FAL-DKRFGTVVIS 157 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHH-HHHHHHHHTSCHHHHTTEEEEECBTTB-CCC-SCCEEEEEEC
T ss_pred CCCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHHHHhhcccccccceEEEeCchhc-CCc-CCCcCEEEEC
Confidence 3569999999999999999887 78999999999998 6776666554310 233444444432 333 6799999876
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
..+.++.+.++...+++++.++|+|||++++..+..
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 444355555677899999999999999999985444
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=127.08 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=82.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC-
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD- 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~- 86 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+. .+..+..+.. ..++. ++||+|++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~-~~~~~-~~fD~v~~~~~ 110 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEML-SEAENKFRSQGL--KPRLACQDIS-NLNIN-RKFDLITCCLD 110 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHH-HHHHHHHHHTTC--CCEEECCCGG-GCCCS-CCEEEEEECTT
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHH-HHHHHHHhhcCC--CeEEEecccc-cCCcc-CCceEEEEcCc
Confidence 6789999999999999999887 78999999999998 666666655443 2233333322 22333 7899999998
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++.|....+++..+++++.++|+|||.+++.++
T Consensus 111 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 986665557788999999999999999998643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=131.33 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=107.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|.++..+++.. +.+|+++|+|+.++ +.++.+....+. ..+..+..+.. .+++.+++||+|++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~~~~~~~d~~-~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESL-EKARENTEKNGI-KNVKFLQANIF-SLPFEDSSFDHIFV 111 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTC-CSEEEEECCGG-GCCSCTTCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC-CCcEEEEcccc-cCCCCCCCeeEEEE
Confidence 3568899999999999999998875 67899999999998 777777766555 22333333332 34566789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCc---eEee---e--eccCCCcchhHHHHHHH
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA---FLMS---W--RRRIGKEDETIFFTSCE 156 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~---~~~~---~--~~~~~~~~~~~~~~~~~ 156 (175)
..++++..+ ...+++++.++|+|||.+++............ ..+. +... . ...........+.++++
T Consensus 112 ~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 186 (276)
T 3mgg_A 112 CFVLEHLQS---PEEALKSLKKVLKPGGTITVIEGDHGSCYFHP--EGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQ 186 (276)
T ss_dssp ESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECGGGCEEES--CCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHH
T ss_pred echhhhcCC---HHHHHHHHHHHcCCCcEEEEEEcCCCCceECC--CcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 999966554 44999999999999999998754331111000 0000 0000 0 00011123478899999
Q ss_pred HcCCeeEEecceEEEE
Q 030558 157 NAGLEVKHLGSRVYCI 172 (175)
Q Consensus 157 ~~g~~~~~~~~~~~~i 172 (175)
++||++.++.....++
T Consensus 187 ~aGf~~v~~~~~~~~~ 202 (276)
T 3mgg_A 187 ESGFEKIRVEPRMVYI 202 (276)
T ss_dssp HTTCEEEEEEEEEEEE
T ss_pred HCCCCeEEEeeEEEEC
Confidence 9999988887665544
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=131.54 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=81.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CC---CCCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FP---IPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~fD~ 81 (175)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.++ +.++++............+.+..++. ++ +.+++||+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKML-KYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 35789999999999999999887 77999999999998 66665543332211112222222222 22 46789999
Q ss_pred EEeC-CcccCccc----chHHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILAS-DILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~-~~l~~~~~----~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|++. +++.|..+ .+++..++++++++|+|||.+++..
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998 88866665 3557799999999999999999874
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=128.75 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=85.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++....+|+++|+|+.++ +.++++....+...++..+..+..+ .++ .+++||+|++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQ 140 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEEC
Confidence 46789999999999999998887445899999999998 6777666655443233344333322 244 46799999999
Q ss_pred CcccCc-ccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 86 DILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 86 ~~l~~~-~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.++++. .+.++...+++++.++|+|||.+++..+.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 988442 44667789999999999999999988544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=128.55 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=98.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC---------------------------
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP--------------------------- 59 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~--------------------------- 59 (175)
.++++|||+|||+|.++..+++....+|+++|+|+.++ +.++++........
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNL-WELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHH-HHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 46789999999999999998776333899999999998 66655554322000
Q ss_pred -Cc-ceeeccCCCCCCCCC---CCccEEEeCCcccCcc-cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCC
Q 030558 60 -AL-PHIKHSWGDAFPIPN---PDWDLILASDILLYVK-QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP 133 (175)
Q Consensus 60 -~~-~~~~~~~~~~~~~~~---~~fD~i~~~~~l~~~~-~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~ 133 (175)
.+ ..+..+..+..+..+ ++||+|++..++++.. ..+++..+++++.++|+|||.+++.......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~---------- 203 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS---------- 203 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC----------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc----------
Confidence 02 333344433333334 7999999999984222 3446779999999999999999987522110
Q ss_pred ceEeeeec-cCCCcchhHHHHHHHHcCCeeEEec
Q 030558 134 AFLMSWRR-RIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 134 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
.+...... .....+.+.+.+.++++||++.++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 204 YYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp EEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred eEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 11100000 1111234789999999999987765
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=131.68 Aligned_cols=148 Identities=10% Similarity=0.012 Sum_probs=97.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.++ +.++.+. ++..+..+. ..+++++++||+|++..
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~-~~a~~~~-------~~~~~~~d~-~~~~~~~~~fD~v~~~~ 102 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMR-QQAVVHP-------QVEWFTGYA-ENLALPDKSVDGVISIL 102 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHH-HSSCCCT-------TEEEECCCT-TSCCSCTTCBSEEEEES
T ss_pred CCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHH-HHHHhcc-------CCEEEECch-hhCCCCCCCEeEEEEcc
Confidence 46789999999999999999885 78999999999987 4332211 223333333 33566778999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCC-CCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG-LPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
++++. +++..+++++.++|| ||.+++............. ...+.........+ .+...+. +++++||+..++
T Consensus 103 ~l~~~---~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~l~~aGF~~v~~ 175 (261)
T 3ege_A 103 AIHHF---SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFL--PLDEQIN-LLQENTKRRVEA 175 (261)
T ss_dssp CGGGC---SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSC--CHHHHHH-HHHHHHCSEEEE
T ss_pred hHhhc---cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhC--CCHHHHH-HHHHcCCCceeE
Confidence 99555 455599999999999 9988887554322221110 00111111111112 1346677 999999987777
Q ss_pred cceEEE
Q 030558 166 GSRVYC 171 (175)
Q Consensus 166 ~~~~~~ 171 (175)
....++
T Consensus 176 ~~~~~p 181 (261)
T 3ege_A 176 IPFLLP 181 (261)
T ss_dssp EECCEE
T ss_pred EEecCC
Confidence 554444
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=123.05 Aligned_cols=139 Identities=13% Similarity=0.109 Sum_probs=97.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++.. .+|+++|+++.++ +.++++ . +.+.+..++ .++.+++||+|++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~-~~a~~~-----~----~~v~~~~~d-~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIAL-KEVKEK-----F----DSVITLSDP-KEIPDNSVDFILFA 82 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHH-HHHHHH-----C----TTSEEESSG-GGSCTTCEEEEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHH-HHHHHh-----C----CCcEEEeCC-CCCCCCceEEEEEc
Confidence 3467899999999999999998875 4999999999998 555544 1 123333334 66677899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.++++.. +...+++++.++|+|||++++............ .....+ +..++.++++ ||++.+.
T Consensus 83 ~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~l~--Gf~~~~~ 145 (170)
T 3i9f_A 83 NSFHDMD---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGP---------PLSIRM---DEKDYMGWFS--NFVVEKR 145 (170)
T ss_dssp SCSTTCS---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS---------CGGGCC---CHHHHHHHTT--TEEEEEE
T ss_pred cchhccc---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCc---------hHhhhc---CHHHHHHHHh--CcEEEEc
Confidence 9996664 455999999999999999999754432221110 011122 3477888887 9987665
Q ss_pred ---cceEEEEe
Q 030558 166 ---GSRVYCIK 173 (175)
Q Consensus 166 ---~~~~~~i~ 173 (175)
....|.+.
T Consensus 146 ~~~~~~~~~l~ 156 (170)
T 3i9f_A 146 FNPTPYHFGLV 156 (170)
T ss_dssp ECSSTTEEEEE
T ss_pred cCCCCceEEEE
Confidence 33445543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=124.81 Aligned_cols=142 Identities=8% Similarity=0.029 Sum_probs=91.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh----------CCCC---CCcceeeccCCCCCC-
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT----------NGIT---PALPHIKHSWGDAFP- 73 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~~~- 73 (175)
++.+|||+|||+|..+..|++. |.+|+|+|+|+.|+ +.+++.... ++.. .....+.+..++...
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGI-REFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHH-HHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 6789999999999999999887 88999999999998 554433211 0000 001223343444332
Q ss_pred -CC-CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHH
Q 030558 74 -IP-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIF 151 (175)
Q Consensus 74 -~~-~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (175)
.. .++||+|++..++.+.+ .++...+++++.++|||||++++.+....... . ..+. +. .+..++
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~--~--~g~~--------~~-~~~~el 211 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTK--H--AGPP--------FY-VPSAEL 211 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS--C--CCSS--------CC-CCHHHH
T ss_pred CcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc--C--CCCC--------CC-CCHHHH
Confidence 33 27999999988875553 55677899999999999999875533221110 0 0111 11 124777
Q ss_pred HHHHHHcCCeeEEec
Q 030558 152 FTSCENAGLEVKHLG 166 (175)
Q Consensus 152 ~~~~~~~g~~~~~~~ 166 (175)
.+++.. +|+++.+.
T Consensus 212 ~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 212 KRLFGT-KCSMQCLE 225 (252)
T ss_dssp HHHHTT-TEEEEEEE
T ss_pred HHHhhC-CeEEEEEe
Confidence 787776 58876653
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=129.98 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=76.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-----CcceeeccC-CCC------CCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-----ALPHIKHSW-GDA------FPIP 75 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~------~~~~ 75 (175)
++.+|||||||+|..+..++...+.+|+|+|+|+.|+ +.++......+... .+.....+. ++. .+++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l-~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAI-ARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4789999999999877666665567899999999999 55554443322210 011111111 111 1245
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+++||+|++..++++..+.++...++++++++|||||.++++++.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 679999999988855444445679999999999999999988543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=130.04 Aligned_cols=155 Identities=8% Similarity=0.010 Sum_probs=104.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++..+.+|+++|+|+.++ +.++++....+....+..+..+. ... +++||+|++.
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~---~~~-~~~fD~v~~~ 162 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLLQGW---EDF-AEPVDRIVSI 162 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEESCG---GGC-CCCCSEEEEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECCh---HHC-CCCcCEEEEe
Confidence 456889999999999999999887678999999999998 77777766655533334433332 222 2789999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCC---------ceEeee-eccCCCcchhHHHHHH
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP---------AFLMSW-RRRIGKEDETIFFTSC 155 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~ 155 (175)
.++.+.. .++...+++++.++|+|||++++................+ .+...+ .......+..++.+++
T Consensus 163 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 241 (318)
T 2fk8_A 163 EAFEHFG-HENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHG 241 (318)
T ss_dssp SCGGGTC-GGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHH
T ss_pred ChHHhcC-HHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHH
Confidence 9985553 3567799999999999999999975443221100000000 000000 0001112468899999
Q ss_pred HHcCCeeEEec
Q 030558 156 ENAGLEVKHLG 166 (175)
Q Consensus 156 ~~~g~~~~~~~ 166 (175)
+++||++.++.
T Consensus 242 ~~aGf~~~~~~ 252 (318)
T 2fk8_A 242 EKAGFTVPEPL 252 (318)
T ss_dssp HHTTCBCCCCE
T ss_pred HhCCCEEEEEE
Confidence 99999977654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=122.30 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=79.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe-C
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA-S 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~-~ 85 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++.. .+..+..+..+ .+. +++||+|++ .
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~-~~a~~~~~------~~~~~~~d~~~-~~~-~~~~D~v~~~~ 108 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDML-THARKRLP------DATLHQGDMRD-FRL-GRKFSAVVSMF 108 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHH-HHHHHHCT------TCEEEECCTTT-CCC-SSCEEEEEECT
T ss_pred CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHH-HHHHHhCC------CCEEEECCHHH-ccc-CCCCcEEEEcC
Confidence 35789999999999999999887 55999999999998 55554421 22333333322 233 578999995 5
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+++.+..+.+++..+++++.++|+|||.+++.....
T Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 109 SSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp TGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred chHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 587666656778899999999999999999975443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=121.39 Aligned_cols=107 Identities=13% Similarity=0.235 Sum_probs=81.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+. .+..+..+.. ..++.+++||+|+++.+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~-~~~~~~~~~D~v~~~~~ 112 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMI-RKAREYAKSRES--NVEFIVGDAR-KLSFEDKTFDYVIFIDS 112 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCTT-SCCSCTTCEEEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCC--CceEEECchh-cCCCCCCcEEEEEEcCc
Confidence 4789999999999999999887 56999999999998 677666655442 3344444332 23455679999999998
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+ +....++...+++++.++|+|||.+++..+.
T Consensus 113 ~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 113 I-VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp G-GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred h-HhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4 2344556779999999999999999888443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-20 Score=132.58 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=78.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i~~~ 85 (175)
.+|++|||||||+|..+..+++....+|+++|+|+.++ +.++++....+. .+..+..++.+. .++.+++||.|+.-
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~-~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHH-HHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence 46889999999999999999887567899999999998 777766665444 222333333222 24567899999753
Q ss_pred Cc--ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DI--LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~--l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ .+...+..+...+++++.|+|||||+|.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 22 122344556779999999999999988875
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=128.95 Aligned_cols=151 Identities=14% Similarity=0.098 Sum_probs=98.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|+ +.++++. ..+..+..+.. .+++ +++||+|++..
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~-~~a~~~~------~~~~~~~~d~~-~~~~-~~~fD~v~~~~ 125 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMI-EKARQNY------PHLHFDVADAR-NFRV-DKPLDAVFSNA 125 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHH-HHHHHHC------TTSCEEECCTT-TCCC-SSCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHH-HHHHhhC------CCCEEEECChh-hCCc-CCCcCEEEEcc
Confidence 4678999999999999999988 478999999999998 5555443 12234443333 2344 57999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC---CCC---CCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTE---GLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
++++.. ++..+++++.++|+|||++++..+...... ..+ ..............+...+...+.++++++||
T Consensus 126 ~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 202 (279)
T 3ccf_A 126 MLHWVK---EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGF 202 (279)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTE
T ss_pred hhhhCc---CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCC
Confidence 995554 445999999999999999998755432110 000 00000000000000111245889999999999
Q ss_pred eeEEecceEE
Q 030558 161 EVKHLGSRVY 170 (175)
Q Consensus 161 ~~~~~~~~~~ 170 (175)
++..+....+
T Consensus 203 ~~~~~~~~~~ 212 (279)
T 3ccf_A 203 DVTYAALFNR 212 (279)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEecc
Confidence 9877654433
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=121.33 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=97.9
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+||| +|.++..+++..+.+|+++|+|+.++ +.++++...++. ++..+..+.....++.+++||+|+++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFF-EYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHH-HHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEEC
Confidence 467899999999 99999999887678999999999998 888888887766 44555544433334556899999998
Q ss_pred CcccCccc----------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchh
Q 030558 86 DILLYVKQ----------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 149 (175)
Q Consensus 86 ~~l~~~~~----------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (175)
..++.... ......+++++.++|+|||++++..+.. .....
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------~~~~~ 187 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-----------------------EKLLN 187 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-----------------------HHHHH
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-----------------------HhHHH
Confidence 77532221 1223689999999999999888842210 01247
Q ss_pred HHHHHHHHcCCeeEEe
Q 030558 150 IFFTSCENAGLEVKHL 165 (175)
Q Consensus 150 ~~~~~~~~~g~~~~~~ 165 (175)
.+.+.+++.||+++.+
T Consensus 188 ~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 188 VIKERGIKLGYSVKDI 203 (230)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCceEEE
Confidence 7888999999987765
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-18 Score=121.72 Aligned_cols=104 Identities=12% Similarity=0.196 Sum_probs=79.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC-
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD- 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~- 86 (175)
++.+|||+|||+|.++..+++. .+|+++|+|+.++ +.++++....+. .+..+..+..+ .+. .++||+|++..
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~-~~~-~~~fD~v~~~~~ 105 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEML-EIAQEKAMETNR--HVDFWVQDMRE-LEL-PEPVDAITILCD 105 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECCGGG-CCC-SSCEEEEEECTT
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHH-HHHHHhhhhcCC--ceEEEEcChhh-cCC-CCCcCEEEEeCC
Confidence 5689999999999999999776 7899999999998 666666655432 23333333322 233 37899999975
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
++.+..+.++...+++++.++|+|||.+++.+
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 106 SLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 88666566778899999999999999998864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=121.11 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=94.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++....+|+++|+|+.++ +.++++....+... +.+..++..+..+++||+|+++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~----v~~~~~d~~~~~~~~fD~i~~~~ 133 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESM-TAAEENAALNGIYD----IALQKTSLLADVDGKFDLIVANI 133 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCC----CEEEESSTTTTCCSCEEEEEEES
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCc----eEEEeccccccCCCCceEEEECC
Confidence 36789999999999999999886455899999999998 77777877766622 33334444445568999999987
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
++ . .+..+++++.++|+|||.+++..... .....+.+.++++||++..+
T Consensus 134 ~~---~---~~~~~l~~~~~~L~~gG~l~~~~~~~------------------------~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 134 LA---E---ILLDLIPQLDSHLNEDGQVIFSGIDY------------------------LQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp CH---H---HHHHHGGGSGGGEEEEEEEEEEEEEG------------------------GGHHHHHHHHHHTTEEEEEE
T ss_pred cH---H---HHHHHHHHHHHhcCCCCEEEEEecCc------------------------ccHHHHHHHHHHcCCceEEe
Confidence 65 2 24589999999999999888741111 12477889999999987665
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-19 Score=130.14 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=75.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.+.+|||||||+|..+..+++. +.+|+|+|+|+.|+ +.+++. .++..+..+ .+.+++++++||+|++..+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml-~~a~~~-------~~v~~~~~~-~e~~~~~~~sfD~v~~~~~ 108 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQI-RQALRH-------PRVTYAVAP-AEDTGLPPASVDVAIAAQA 108 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHH-HTCCCC-------TTEEEEECC-TTCCCCCSSCEEEEEECSC
T ss_pred CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhh-hhhhhc-------CCceeehhh-hhhhcccCCcccEEEEeee
Confidence 4578999999999999999887 78999999999998 433211 122222222 3456788899999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+ |+.+.+ ++++++.|+|||||++++..
T Consensus 109 ~-h~~~~~---~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 109 M-HWFDLD---RFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp C-TTCCHH---HHHHHHHHHEEEEEEEEEEE
T ss_pred h-hHhhHH---HHHHHHHHHcCCCCEEEEEE
Confidence 8 665444 89999999999999998873
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=124.19 Aligned_cols=103 Identities=15% Similarity=0.253 Sum_probs=78.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++. +. +|+++|+|+.++ +.++++.... .+..+..+.. ..++.+++||+|++.
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~-~~a~~~~~~~----~~~~~~~d~~-~~~~~~~~fD~v~~~ 114 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKML-ARARAAGPDT----GITYERADLD-KLHLPQDSFDLAYSS 114 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHH-HHHHHTSCSS----SEEEEECCGG-GCCCCTTCEEEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHH-HHHHHhcccC----CceEEEcChh-hccCCCCCceEEEEe
Confidence 46789999999999999999887 55 899999999998 5655443321 2233333332 234567799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.++++.. +...+++++.++|+|||++++...
T Consensus 115 ~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 115 LALHYVE---DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp SCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccc---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 9985554 456999999999999999998753
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=120.82 Aligned_cols=111 Identities=10% Similarity=0.042 Sum_probs=79.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.++ +.++++....+. .++..+..+..+..++.+++||+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l-~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQAL-GKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 346889999999999999999988 88999999999998 777777776655 334444422222112446789999887
Q ss_pred CcccCc------ccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 86 DILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 86 ~~l~~~------~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
...... ........+++++.++|||||++++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 322111 0234566889999999999999988643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=122.96 Aligned_cols=148 Identities=19% Similarity=0.215 Sum_probs=96.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++. ..+..+..+..+ .+ .+++||+|++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-~~a~~~~------~~~~~~~~d~~~-~~-~~~~fD~v~~ 101 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-EKAADRL------PNTNFGKADLAT-WK-PAQKADLLYA 101 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-HHHHHHS------TTSEEEECCTTT-CC-CSSCEEEEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhC------CCcEEEECChhh-cC-ccCCcCEEEE
Confidence 3467899999999999999998865 67899999999998 5555441 123344333322 33 5679999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-----CCCC--CCCCceEeee-eccCCCcchhHHHHHHH
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----GTEG--LPWPAFLMSW-RRRIGKEDETIFFTSCE 156 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 156 (175)
+.++++.. +...+++++.++|+|||.+++..+...... .... ..+....... .......+...+.++++
T Consensus 102 ~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (259)
T 2p35_A 102 NAVFQWVP---DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALS 178 (259)
T ss_dssp ESCGGGST---THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHG
T ss_pred eCchhhCC---CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHH
Confidence 99995553 456999999999999999999865432110 0000 0011100000 00111224588999999
Q ss_pred HcCCeeEEe
Q 030558 157 NAGLEVKHL 165 (175)
Q Consensus 157 ~~g~~~~~~ 165 (175)
++||++...
T Consensus 179 ~aGf~v~~~ 187 (259)
T 2p35_A 179 PKSSRVDVW 187 (259)
T ss_dssp GGEEEEEEE
T ss_pred hcCCceEEE
Confidence 999986544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=116.91 Aligned_cols=143 Identities=14% Similarity=0.241 Sum_probs=97.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+. ..+..+..+..+ .++ +++||+|++.
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~~~~~~~d~~~-~~~-~~~~D~v~~~ 104 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSI-ANVERIKSIENL-DNLHTRVVDLNN-LTF-DRQYDFILST 104 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHHTC-TTEEEEECCGGG-CCC-CCCEEEEEEE
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHhCCC-CCcEEEEcchhh-CCC-CCCceEEEEc
Confidence 346789999999999999999887 78999999999998 666666655444 123333333322 334 6799999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.++++.. .++...+++++.++|+|||.+++........... . ..+...+ +..++.+++++ |++.+.
T Consensus 105 ~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---~-----~~~~~~~---~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 105 VVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---T-----VGFPFAF---KEGELRRYYEG--WERVKY 170 (199)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---C-----SCCSCCB---CTTHHHHHTTT--SEEEEE
T ss_pred chhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC---C-----CCCCCcc---CHHHHHHHhcC--CeEEEe
Confidence 9985543 4567799999999999999987764332211100 0 0011122 23677777765 887776
Q ss_pred cc
Q 030558 166 GS 167 (175)
Q Consensus 166 ~~ 167 (175)
.+
T Consensus 171 ~~ 172 (199)
T 2xvm_A 171 NE 172 (199)
T ss_dssp EC
T ss_pred cc
Confidence 44
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-18 Score=122.77 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=101.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++. .... ..+..+..+. ..+++.+++||+|++.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~-~~~~-~~~~~~~~d~-~~~~~~~~~fD~v~~~ 111 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAML-EVFRQKI-AGVD-RKVQVVQADA-RAIPLPDESVHGVIVV 111 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHH-HHHHHHT-TTSC-TTEEEEESCT-TSCCSCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHh-hccC-CceEEEEccc-ccCCCCCCCeeEEEEC
Confidence 346789999999999999999887 78999999999998 6666554 2111 2334443333 2345667899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEee--e--eccCCCcchhHHHHHHHHcCC
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMS--W--RRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~g~ 160 (175)
.++++.. +...+++++.++|+|||.+++......... ............. + .......+...+.++++++||
T Consensus 112 ~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 188 (263)
T 2yqz_A 112 HLWHLVP---DWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGL 188 (263)
T ss_dssp SCGGGCT---THHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CchhhcC---CHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCC
Confidence 9985544 455999999999999999988721110000 0000000000000 0 000011234778899999999
Q ss_pred eeEEecceEEEE
Q 030558 161 EVKHLGSRVYCI 172 (175)
Q Consensus 161 ~~~~~~~~~~~i 172 (175)
++.......|..
T Consensus 189 ~~~~~~~~~~~~ 200 (263)
T 2yqz_A 189 KPRTREVARWRE 200 (263)
T ss_dssp CCEEEEEEEEEE
T ss_pred CcceEEEeeeec
Confidence 987765555543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=122.10 Aligned_cols=106 Identities=13% Similarity=0.261 Sum_probs=83.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++...++. .+..+..+..+ .+. +++||+|+++.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~-~~~-~~~fD~i~~~~ 192 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSI-AFLNETKEKENL--NISTALYDINA-ANI-QENYDFIVSTV 192 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCGGG-CCC-CSCEEEEEECS
T ss_pred cCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEecccc-ccc-cCCccEEEEcc
Confidence 36889999999999999999887 77999999999998 777777776655 33444333322 222 67999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++++. ..+.+..+++++.++|+|||.+++...
T Consensus 193 ~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 193 VFMFL-NRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SGGGS-CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhhC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 98544 456778999999999999999777633
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=120.67 Aligned_cols=110 Identities=9% Similarity=0.145 Sum_probs=81.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|..+..++...+.+|+++|+|+.++ +.++++....+. .+..+..+.. ..++++++||+|++..
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~-~~~~~~~~fD~v~~~~ 97 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQL-KKAENFSRENNF--KLNISKGDIR-KLPFKDESMSFVYSYG 97 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHH-HHHHHHHHHHTC--CCCEEECCTT-SCCSCTTCEEEEEECS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECchh-hCCCCCCceeEEEEcC
Confidence 35789999999999985544444578999999999998 666655544332 2334433332 3456678999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+++|.. .++...+++++.++|+|||.+++.....
T Consensus 98 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 98 TIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred hHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 986653 4677899999999999999999986544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=127.09 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=91.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC--------------C--------------
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT--------------P-------------- 59 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~--------------~-------------- 59 (175)
++.+|||||||+|..+..++...+.+|+|+|+|+.|+ +.++++....... .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHH-HHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 6789999999999965545444467999999999998 5555443221000 0
Q ss_pred -CcceeeccCCCCCC-----CCCCCccEEEeCCcccCccc-chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCC
Q 030558 60 -ALPHIKHSWGDAFP-----IPNPDWDLILASDILLYVKQ-YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPW 132 (175)
Q Consensus 60 -~~~~~~~~~~~~~~-----~~~~~fD~i~~~~~l~~~~~-~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~ 132 (175)
....+..+..+..+ +++++||+|+++.++++... .+++..+++++.++|||||++++......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~---------- 219 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE---------- 219 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC----------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCc----------
Confidence 00111123322232 33467999999999854222 34677999999999999999998621100
Q ss_pred CceEee-eeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 133 PAFLMS-WRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 133 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
..+... ........+..++.++++++||++..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 220 SWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp CEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 000000 0000111245889999999999877654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=121.21 Aligned_cols=147 Identities=10% Similarity=0.117 Sum_probs=99.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++.+.. ..+..+..+ ..++.+++||+|++.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~-~~~~~~~~--------~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAA-EQAKEKLD--------HVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHH-HHHHTTSS--------EEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHhCC--------cEEEcchhhcCCCCCCCccCEEEEC
Confidence 36789999999999999999888 78999999999997 55543321 223333322 245567899999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------CCCC-CCCCceEeeeeccCCCcchhHHHHHHHH
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------GTEG-LPWPAFLMSWRRRIGKEDETIFFTSCEN 157 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (175)
.++++..+ ...+++++.++|+|||.+++..+...... .... .........+.+.+ +..++.+++++
T Consensus 101 ~~l~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 174 (230)
T 3cc8_A 101 DVLEHLFD---PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFF---TFNEMLRMFLK 174 (230)
T ss_dssp SCGGGSSC---HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCC---CHHHHHHHHHH
T ss_pred ChhhhcCC---HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEe---cHHHHHHHHHH
Confidence 99955543 45999999999999999999865432110 0000 00000000011112 35889999999
Q ss_pred cCCeeEEecceE
Q 030558 158 AGLEVKHLGSRV 169 (175)
Q Consensus 158 ~g~~~~~~~~~~ 169 (175)
+||++.++....
T Consensus 175 ~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 175 AGYSISKVDRVY 186 (230)
T ss_dssp TTEEEEEEEEEE
T ss_pred cCCeEEEEEecc
Confidence 999988876544
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=117.33 Aligned_cols=107 Identities=14% Similarity=0.219 Sum_probs=79.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+. .+..+..+..+ .+. .++||+|++..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l-~~a~~~~~~~~~--~v~~~~~d~~~-~~~-~~~fD~v~~~~ 113 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDVLE-IAF-KNEFDAVTMFF 113 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCGGG-CCC-CSCEEEEEECS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHhcCC--ceEEEECChhh-ccc-CCCccEEEEcC
Confidence 35689999999999999999887 78999999999998 677766665444 23344333322 222 36899999864
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
...+....++...+++++.++|+|||.+++..+
T Consensus 114 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 114 STIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 332333456778999999999999999987643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=122.71 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=82.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++..... .+..+..+..+. + .+++||+|+++.
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~---~~~~~~~d~~~~-~-~~~~fD~v~~~~ 122 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAI-GRACQRTKRWS---HISWAATDILQF-S-TAELFDLIVVAE 122 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHH-HHHHHHTTTCS---SEEEEECCTTTC-C-CSCCEEEEEEES
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHhcccCC---CeEEEEcchhhC-C-CCCCccEEEEcc
Confidence 35678999999999999999887 67999999999998 66665554321 233333333222 2 467999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+++|..+.+.+..+++++.++|+|||.+++..+
T Consensus 123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 998877777778999999999999999998643
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=116.07 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=97.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++ +|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+. .+..+..+.. ..++.+++||+|+++..
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 103 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGL-AKAKQLAQEKGV--KITTVQSNLA-DFDIVADAWEGIVSIFC 103 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHH-HHHHHHHHHHTC--CEEEECCBTT-TBSCCTTTCSEEEEECC
T ss_pred CC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcChh-hcCCCcCCccEEEEEhh
Confidence 45 9999999999999999887 77999999999998 666666554333 2233333322 23455679999999643
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEecc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
+. ..++...+++++.++|+|||.+++..+......... ..+. ..... .+..++.++++ ||++..+.+
T Consensus 104 --~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~---~~~~~---~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 104 --HL-PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNT--GGPK---DLDLL---PKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp --CC-CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTS--CCSS---SGGGC---CCHHHHHHHCS--SSCEEEEEE
T ss_pred --cC-CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCC--CCCC---cceee---cCHHHHHHHhc--CceEEEEEE
Confidence 22 345778999999999999999999865443221100 0000 00011 23578888888 999888766
Q ss_pred eEEE
Q 030558 168 RVYC 171 (175)
Q Consensus 168 ~~~~ 171 (175)
....
T Consensus 171 ~~~~ 174 (202)
T 2kw5_A 171 LERN 174 (202)
T ss_dssp EEEE
T ss_pred EEee
Confidence 5443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=121.32 Aligned_cols=159 Identities=11% Similarity=0.037 Sum_probs=100.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChH------HHHHHHHHHHhhCCCCCCcceeecc-C-CCCCCCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQ------EIEDNIAYNSTTNGITPALPHIKHS-W-GDAFPIP 75 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~------~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 75 (175)
..++.+|||||||+|.++..+++..+ .+|+++|+|+. ++ +.++++....+...++..+..+ . ...+++.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL-GQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCH-HHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHH-HHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 45788999999999999999988753 78999999997 87 6777776665542233333332 1 1123446
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceE----e---e--eeccCCC
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFL----M---S--WRRRIGK 145 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~----~---~--~~~~~~~ 145 (175)
+++||+|++..++++..+.. .+++.+.++++|||.+++......... .........+. . . .......
T Consensus 120 ~~~fD~v~~~~~l~~~~~~~---~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFASAN---ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTL 196 (275)
T ss_dssp TCCCSEEEEESCGGGSSCHH---HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCC
T ss_pred CCCEEEEEEccchhhCCCHH---HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccccccc
Confidence 78999999999996665443 566666777777999998744332211 00000000000 0 0 0000011
Q ss_pred cchhHHHHHHHHcCCeeEEecce
Q 030558 146 EDETIFFTSCENAGLEVKHLGSR 168 (175)
Q Consensus 146 ~~~~~~~~~~~~~g~~~~~~~~~ 168 (175)
.+...+.++++++||++.+....
T Consensus 197 ~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 197 ITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCHHHHHHHHHHHTCEEEECCCB
T ss_pred CCHHHHHHHHHHCCCeeEEEEEe
Confidence 24588999999999998877553
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-19 Score=130.15 Aligned_cols=147 Identities=12% Similarity=0.189 Sum_probs=90.2
Q ss_pred cCCCcEEEeCCCccHHHHHHH----HhC-CCc--EEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccC--CCC--C--
Q 030558 7 IERRRCIELGSGTGALAIFLR----KAM-NLD--ITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSW--GDA--F-- 72 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~----~~~-~~~--v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~--~~~--~-- 72 (175)
.++.+|||||||+|.++..++ ... +.. ++++|+|++|+ +.++++.... +. ..+.+.+ ++. +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml-~~a~~~~~~~~~~----~~v~~~~~~~~~~~~~~ 125 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKTSNL----ENVKFAWHKETSSEYQS 125 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHH-HHHHHHHHTCSSC----TTEEEEEECSCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHH-HHHHHHHHhccCC----CcceEEEEecchhhhhh
Confidence 356799999999998775433 221 333 39999999998 5555554432 22 2222222 221 1
Q ss_pred ----CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEe--eeeccCCCc
Q 030558 73 ----PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLM--SWRRRIGKE 146 (175)
Q Consensus 73 ----~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 146 (175)
++.+++||+|+++.+++++.+ +..++++++++|||||++++............. ..+.. .........
T Consensus 126 ~~~~~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 126 RMLEKKELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLW---KKYGSRFPQDDLCQYI 199 (292)
T ss_dssp HHHTTTCCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHH---HHHGGGSCCCTTCCCC
T ss_pred hhccccCCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHH---HHHHHhccCCCcccCC
Confidence 245789999999999966654 449999999999999999987433211000000 00000 000001112
Q ss_pred chhHHHHHHHHcCCeeEE
Q 030558 147 DETIFFTSCENAGLEVKH 164 (175)
Q Consensus 147 ~~~~~~~~~~~~g~~~~~ 164 (175)
+..++.++++++||++..
T Consensus 200 ~~~~~~~~l~~aGf~~~~ 217 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYEC 217 (292)
T ss_dssp CHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHCCCceEE
Confidence 358899999999998765
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.9e-18 Score=123.17 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=78.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCCcc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD 80 (175)
...++.+|||||||+|.++..+++. +.+|+++|+|+.|+ +.++++.... .+..++.+.. ...+++||
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml-~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD 112 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMC-DDLAEALADR-------CVTIDLLDITAEIPKELAGHFD 112 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCS
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHhc-------cceeeeeecccccccccCCCcc
Confidence 3456889999999999999999887 78999999999998 6776665443 1223332211 12256899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|+++.+++++. .++...+++++.++| |||+++++.
T Consensus 113 ~Vv~~~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 113 FVLNDRLINRFT-TEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred EEEEhhhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 999999985443 556778999999999 999999873
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=121.20 Aligned_cols=132 Identities=15% Similarity=0.153 Sum_probs=96.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.+++.+++....+|+|+|+++.++ +.++++...++...++..+..+..+..+ +.+++||+|+++.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~-~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLA-DMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHH-HHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHH-HHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 6789999999999999999988555999999999998 8888888888875455555555443332 3467999999987
Q ss_pred cccCc-----------------ccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchh
Q 030558 87 ILLYV-----------------KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 149 (175)
Q Consensus 87 ~l~~~-----------------~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (175)
.++.. .....+..+++.+.++|+|||++++.... ....
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------~~~~ 182 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-------------------------ERLL 182 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-------------------------TTHH
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-------------------------HHHH
Confidence 75332 00134568999999999999988884211 1136
Q ss_pred HHHHHHHHcCCeeEEe
Q 030558 150 IFFTSCENAGLEVKHL 165 (175)
Q Consensus 150 ~~~~~~~~~g~~~~~~ 165 (175)
++.+.+++.||.+..+
T Consensus 183 ~~~~~l~~~~~~~~~~ 198 (259)
T 3lpm_A 183 DIIDIMRKYRLEPKRI 198 (259)
T ss_dssp HHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHCCCceEEE
Confidence 6777788888876654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=124.80 Aligned_cols=148 Identities=14% Similarity=0.041 Sum_probs=102.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|..+..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+. .+. +||+|++.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~--~p~-~~D~v~~~ 242 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPA-SAAHRRFLDTGLSGRAQVVVGSFFDP--LPA-GAGGYVLS 242 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSC--CCC-SCSEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHH-HHHHHhhhhcCcCcCeEEecCCCCCC--CCC-CCcEEEEe
Confidence 346899999999999999998865 567999999 8887 77777776666545555555554422 222 89999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCce--EeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAF--LMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
++++++. .++..++++++++.|+|||++++........ . ....+ ...........+..++.++++++||++.
T Consensus 243 ~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~----~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 243 AVLHDWD-DLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-H----AGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHHHTTTCEEEEEECCCC--------CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred hhhccCC-HHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-C----ccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence 9996665 4456799999999999999999874433222 0 00000 0000001111245899999999999877
Q ss_pred Ee
Q 030558 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
++
T Consensus 317 ~~ 318 (332)
T 3i53_A 317 AA 318 (332)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=119.74 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=92.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-CCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++ ...+..+..+..+.+++. +++||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~-~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELL-KLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence 46789999999999999999887 78999999999998 666555 123455555665566666 7899999987
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
. +. ..+++++.++|||||.++. ..... +...+.+.++++||++..+
T Consensus 119 ~------~~---~~~l~~~~~~LkpgG~l~~----------------------~~~~~---~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 R------GP---TSVILRLPELAAPDAHFLY----------------------VGPRL---NVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp S------CC---SGGGGGHHHHEEEEEEEEE----------------------EESSS---CCTHHHHHHHHTTCEEEEE
T ss_pred C------CH---HHHHHHHHHHcCCCcEEEE----------------------eCCcC---CHHHHHHHHHHCCCeEEEE
Confidence 2 22 2788999999999997771 11111 2367888999999998877
Q ss_pred cceEEEE
Q 030558 166 GSRVYCI 172 (175)
Q Consensus 166 ~~~~~~i 172 (175)
....+.+
T Consensus 165 ~~~~~~~ 171 (226)
T 3m33_A 165 DHVSVLA 171 (226)
T ss_dssp EEEEEEE
T ss_pred Eeeeecc
Confidence 6555443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-17 Score=113.48 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=93.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+...++..+..+..+.++ ..+.||+|++.
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~D~v~~~ 129 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRI-ENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLPEAVFIG 129 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCCSEEEEC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHH-HHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCCCEEEEC
Confidence 346789999999999999999998 88999999999998 7888888777663234444433332222 23479999987
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
..+ +.. +++++.++|+|||++++.... ..+...+.+.+++.|+++..+
T Consensus 130 ~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~------------------------~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 130 GGG-------SQA-LYDRLWEWLAPGTRIVANAVT------------------------LESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp SCC-------CHH-HHHHHHHHSCTTCEEEEEECS------------------------HHHHHHHHHHHHHHCSEEEEE
T ss_pred Ccc-------cHH-HHHHHHHhcCCCcEEEEEecC------------------------cccHHHHHHHHHhCCCcEEEE
Confidence 644 233 999999999999988885221 123467788899999887776
Q ss_pred c
Q 030558 166 G 166 (175)
Q Consensus 166 ~ 166 (175)
.
T Consensus 178 ~ 178 (204)
T 3njr_A 178 D 178 (204)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=112.61 Aligned_cols=127 Identities=14% Similarity=0.173 Sum_probs=92.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+....+ .+..+..+.++...++||+|++
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~ 100 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERR-ERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFI 100 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHH-HHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEE
Confidence 3467899999999999999998875 67899999999998 7778777776663344 4443333333333378999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..++.+ ..+++++.+.|+|||++++.... ..+...+.+.+++.|+++..
T Consensus 101 ~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 101 GGGLTA-------PGVFAAAWKRLPVGGRLVANAVT------------------------VESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp CC-TTC-------TTHHHHHHHTCCTTCEEEEEECS------------------------HHHHHHHHHHHHHHCCEEEE
T ss_pred CCcccH-------HHHHHHHHHhcCCCCEEEEEeec------------------------cccHHHHHHHHHHcCCeeEE
Confidence 988733 38999999999999988874211 11235667778888877655
Q ss_pred e
Q 030558 165 L 165 (175)
Q Consensus 165 ~ 165 (175)
+
T Consensus 150 ~ 150 (178)
T 3hm2_A 150 F 150 (178)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-17 Score=123.81 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=102.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
...++|||||||+|.++..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+.. +++ ++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQL-EMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHH-HHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHH-HHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 356899999999999999998865 668999999 8887 777777665554334444444443321 233 78999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCC---CC-CCceE-eeeeccCCCcchhHHHHHHHHcC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG---LP-WPAFL-MSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~---~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
..+++++. .++...+++++.++|+|||++++............. .. ..... ..........+..++.++++++|
T Consensus 255 ~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AG 333 (363)
T 3dp7_A 255 SQFLDCFS-EEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG 333 (363)
T ss_dssp ESCSTTSC-HHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTT
T ss_pred echhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcC
Confidence 99996555 456678999999999999999887433322110000 00 00000 00000001124689999999999
Q ss_pred CeeEEec
Q 030558 160 LEVKHLG 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
|++.++.
T Consensus 334 f~~v~~~ 340 (363)
T 3dp7_A 334 LEVEEIQ 340 (363)
T ss_dssp EEESCCC
T ss_pred CeEEEEE
Confidence 9977664
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-18 Score=127.86 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=81.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++.. +.+|+++|+|+.++ +.++++....+. ++..+..+.. ..++ +++||+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~--~v~~~~~d~~-~~~~-~~~fD~v~ 94 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDAT-EIEL-NDKYDIAI 94 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHH-HHHHHHHHSSSS--EEEEEESCTT-TCCC-SSCEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHhcCC--ceEEEEcchh-hcCc-CCCeeEEE
Confidence 4467899999999999999998864 46899999999998 666666655333 2333333332 2333 46999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+..++.+.. +...++++++++|+|||.+++..+.
T Consensus 95 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 95 CHAFLLHMT---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EESCGGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECChhhcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999985554 4459999999999999999987554
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=112.65 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=94.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC-
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS- 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~- 85 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++.. .+..+..+..+ .++++++||+|++.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~-~~a~~~~~------~~~~~~~d~~~-~~~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILI-DYAKQDFP------EARWVVGDLSV-DQISETDFDLIVSAG 115 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHCT------TSEEEECCTTT-SCCCCCCEEEEEECC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHH-HHHHHhCC------CCcEEEccccc-CCCCCCceeEEEECC
Confidence 36789999999999999999887 78999999999998 66555432 12333333322 34556799999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.++.+ ...++...+++++.++|+|||.+++...... .+ +...+.+.++++||++.+.
T Consensus 116 ~~~~~-~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-------------------~~---~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 116 NVMGF-LAEDGREPALANIHRALGADGRAVIGFGAGR-------------------GW---VFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-------------------SC---CHHHHHHHHHHHTEEEEEE
T ss_pred cHHhh-cChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-------------------Cc---CHHHHHHHHHHcCCEEeee
Confidence 66633 3346677999999999999998888532210 11 2488999999999998876
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=112.22 Aligned_cols=124 Identities=16% Similarity=0.081 Sum_probs=91.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. ..+|+++|+|+.++ +.++++....+. .++..+..+..+..+ ..++||+|++
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~~D~i~~ 114 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYL-GFIRDNLKKFVA-RNVTLVEAFAPEGLD-DLPDPDRVFI 114 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHH-HHHHHHHHHHTC-TTEEEEECCTTTTCT-TSCCCSEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCC-CcEEEEeCChhhhhh-cCCCCCEEEE
Confidence 4467899999999999999999884 47899999999998 777777766555 333444333322222 2367999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
..++ . +...+++++.++|+|||++++..... .....+.+.++++||.+
T Consensus 115 ~~~~---~---~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------~~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 115 GGSG---G---MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------DTLTKAVEFLEDHGYMV 162 (204)
T ss_dssp SCCT---T---CHHHHHHHHHHHCCTTCEEEEEECBH------------------------HHHHHHHHHHHHTTCEE
T ss_pred CCCC---c---CHHHHHHHHHHhcCCCeEEEEEeccc------------------------ccHHHHHHHHHHCCCce
Confidence 8876 2 44499999999999999888842211 12477888899999843
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-19 Score=126.29 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=77.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEEEe-
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILA- 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i~~- 84 (175)
.++.+|||||||+|.++..+++....+|+++|+|+.|+ +.++++....+. ++..+..+..+. .++.+++||+|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHH-HHHHHHHHhcCC--CeEEEecCHHHhhcccCCCceEEEEEC
Confidence 35789999999999999999775445899999999998 676666655432 233333333221 1566789999999
Q ss_pred CCcc-cCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDIL-LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l-~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+ ...........+++++.++|||||++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 5443 12222345568899999999999998876
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-19 Score=139.76 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=96.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.++ +.++++ +...............+++.+++||+|++.+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~-~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~ 179 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVA-AKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAAN 179 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHH-HHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHH-HHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECC
Confidence 46789999999999999999886 77999999999998 555433 2210000110111122334568999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
+++|.. ++..+++++.++|||||.+++..+......... .+..+...+...+ +...+.++++++||++.++.
T Consensus 180 vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~---s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 180 TLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKT--SFDQIFDEHFFLF---SATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp CGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHT--CGGGCSTTCCEEC---CHHHHHHHHHHTTEEEEEEE
T ss_pred hHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhc--chhhhhhhhhhcC---CHHHHHHHHHHcCCEEEEEE
Confidence 995554 566999999999999999999754432111000 0000000011112 35889999999999987764
Q ss_pred c
Q 030558 167 S 167 (175)
Q Consensus 167 ~ 167 (175)
.
T Consensus 252 ~ 252 (416)
T 4e2x_A 252 R 252 (416)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=126.91 Aligned_cols=157 Identities=13% Similarity=0.056 Sum_probs=103.0
Q ss_pred ccC-CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIE-RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~-~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+ +.+|||||||+|.++..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+..++.++.||+|+
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 253 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTR-DAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVM 253 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEE
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHH-HHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEE
Confidence 344 7899999999999999998875 568999999 7787 67776666655533444444444332212456799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC-CCCCCCCceEe-eeeccCCCcchhHHHHHHHHcCCe
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG-TEGLPWPAFLM-SWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
+..+++++. .++...+++++.+.|+|||++++.......... ........+.. .........+..++.++++++||+
T Consensus 254 ~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (352)
T 3mcz_A 254 LNDCLHYFD-AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLA 332 (352)
T ss_dssp EESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCE
T ss_pred EecccccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCc
Confidence 999995554 455679999999999999999987443322211 00000000000 000001112458999999999999
Q ss_pred eEEe
Q 030558 162 VKHL 165 (175)
Q Consensus 162 ~~~~ 165 (175)
+.+.
T Consensus 333 ~~~~ 336 (352)
T 3mcz_A 333 VGER 336 (352)
T ss_dssp EEEE
T ss_pred eeee
Confidence 7764
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=125.33 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=104.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|..+..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+ +.+. .||+|++
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~l~~~v~~~~~d~~~--~~p~-~~D~v~~ 274 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVA-EEARELLTGRGLADRCEILPGDFFE--TIPD-GADVYLI 274 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTT--CCCS-SCSEEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHH-HHHHHhhhhcCcCCceEEeccCCCC--CCCC-CceEEEh
Confidence 3457899999999999999998875 568999999 8887 7777777766665555555555442 2222 8999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
.++++++. .+...++++++.+.|+|||++++............ .....+...........+.+++.++++++||++.+
T Consensus 275 ~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 275 KHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred hhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 99995554 45566899999999999999999744332221110 00000000000001112458999999999999877
Q ss_pred ecc
Q 030558 165 LGS 167 (175)
Q Consensus 165 ~~~ 167 (175)
+..
T Consensus 353 ~~~ 355 (369)
T 3gwz_A 353 SLP 355 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=115.38 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=82.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
.++++|||+|||+|.++..+++....+|+++|+|+.++ +.++++...++. .++..+..+..+..+ +.+++||+|+++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSA-AVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHH-HHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEEC
Confidence 47889999999999999988787556799999999998 788888777665 333444333322221 336799999998
Q ss_pred CcccCcccchHHHHHHHHHHh--hcCCCCceeecccc
Q 030558 86 DILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLTK 120 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~~~~ 120 (175)
..+ +.. .++...+++++.+ +|+|||.+++....
T Consensus 121 ~p~-~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 121 PPY-NVD-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CCT-TSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCC-Ccc-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 875 332 2466799999999 99999999987543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-18 Score=125.25 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=87.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||||.++..+++....+|+|+|+|+.|+...++.+...... . ...+. ......++..+||+|++..
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~-~-~~ni~--~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSM-E-QYNFR--YAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEE-C-SCCGG--GCCGGGCTTCCCSEEEECC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCccccee-c-ccCce--ecchhhCCCCCCCEEEEEe
Confidence 367899999999999999998885568999999999983323321110000 0 00110 0011112334699999876
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
++ + +. ..++.++.++|+|||++++.+.+..... ..+. .....-....++. ...++.+.+.++||.+..+
T Consensus 160 sf-~--sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~-~~G~vrd~~~~~~---~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 160 SF-I--SL---NLILPALAKILVDGGQVVALVKPQFEAGREQIG-KNGIVRESSIHEK---VLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp SS-S--CG---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC--CCCCCCHHHHHH---HHHHHHHHHHHTTEEEEEE
T ss_pred eH-h--hH---HHHHHHHHHHcCcCCEEEEEECcccccChhhcC-CCCccCCHHHHHH---HHHHHHHHHHHCCCEEEEE
Confidence 65 2 23 3899999999999999988632221111 1110 0000000001111 2477889999999998876
Q ss_pred cc
Q 030558 166 GS 167 (175)
Q Consensus 166 ~~ 167 (175)
..
T Consensus 230 ~~ 231 (291)
T 3hp7_A 230 DF 231 (291)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=124.70 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=86.8
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++++|||+|||+|.++..+++....+|+|+|+|+ ++ +.++++...++...++..+..+..+ .++++++||+|++
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~Iis 139 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-IS-DYAVKIVKANKLDHVVTIIKGKVEE-VELPVEKVDIIIS 139 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTT-CCCSSSCEEEEEE
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HH-HHHHHHHHHcCCCCcEEEEECcHHH-ccCCCCceEEEEE
Confidence 4567899999999999999999998555899999995 87 7788888887775445555555433 3556789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+.++......+..+++++.++|||||.++..
T Consensus 140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 877655555566779999999999999988754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=121.17 Aligned_cols=103 Identities=11% Similarity=0.178 Sum_probs=78.1
Q ss_pred cccCCCcEEEeCCCccHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 5 EWIERRRCIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
...++.+|||||||+|.++ +.+++..+.+|+++|+|+.|+ +.++++....+. .++ .+..++...+++++||+|+
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l-~~Ar~~~~~~gl-~~v---~~v~gDa~~l~d~~FDvV~ 193 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIA-ELSRKVIEGLGV-DGV---NVITGDETVIDGLEFDVLM 193 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHH-HHHHHHHHHHTC-CSE---EEEESCGGGGGGCCCSEEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHH-HHHHHHHHhcCC-CCe---EEEECchhhCCCCCcCEEE
Confidence 3457899999999998766 556665688999999999998 777777666555 333 3444444444468999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+.... ++..++++++.++|||||++++..
T Consensus 194 ~~a~~------~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 194 VAALA------EPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ECTTC------SCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ECCCc------cCHHHHHHHHHHHcCCCcEEEEEc
Confidence 86542 345599999999999999999873
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=117.73 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=94.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++++|||+|||+|.+++.+++....+|+|+|+|+.++ +.+++|...++....+..+..+..+... +++||+|++...
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~-~~a~~n~~~n~~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~p 201 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYV 201 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECCHHHhcc--cCCccEEEECCc
Confidence 4889999999999999999998444699999999998 8888898888774334444333332222 668999999644
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
. .. ..+++++.++|+|||.+++...... ..........+.+.++++|+++..+.
T Consensus 202 ~----~~---~~~l~~~~~~LkpgG~l~~~~~~~~------------------~~~~~~~~~~i~~~~~~~G~~~~~~~ 255 (278)
T 2frn_A 202 V----RT---HEFIPKALSIAKDGAIIHYHNTVPE------------------KLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp S----SG---GGGHHHHHHHEEEEEEEEEEEEEEG------------------GGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred h----hH---HHHHHHHHHHCCCCeEEEEEEeecc------------------ccccccHHHHHHHHHHHcCCeeEEee
Confidence 2 12 2788899999999998887522210 01111224677888999999877643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=118.10 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=95.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.+++.+++. +.+|+++|+++.++ +.++++...++.. +.....+..+. +++++||+|+++.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v-~~a~~n~~~~~~~--v~~~~~d~~~~--~~~~~fD~Vv~n~ 192 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVL-PQAEANAKRNGVR--PRFLEGSLEAA--LPFGPFDLLVANL 192 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGH-HHHHHHHHHTTCC--CEEEESCHHHH--GGGCCEEEEEEEC
T ss_pred CCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHHHHcCCc--EEEEECChhhc--CcCCCCCEEEECC
Confidence 46789999999999999999886 55999999999998 8888888877762 33332222221 3356899999875
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe-
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL- 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 165 (175)
.. +.+..+++++.+.|+|||+++++... ......+.+.++++||++.++
T Consensus 193 ~~------~~~~~~l~~~~~~LkpgG~lils~~~------------------------~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 193 YA------ELHAALAPRYREALVPGGRALLTGIL------------------------KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp CH------HHHHHHHHHHHHHEEEEEEEEEEEEE------------------------GGGHHHHHHHHHHTTCEEEEEE
T ss_pred cH------HHHHHHHHHHHHHcCCCCEEEEEeec------------------------cCCHHHHHHHHHHCCCEEEEEe
Confidence 43 23458999999999999988884111 012478889999999987554
Q ss_pred --cceEEEEec
Q 030558 166 --GSRVYCIKL 174 (175)
Q Consensus 166 --~~~~~~i~~ 174 (175)
+++..++.+
T Consensus 243 ~~~~W~~l~~~ 253 (254)
T 2nxc_A 243 AEGEWVLLAYG 253 (254)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCeEEEEEE
Confidence 445444443
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=119.34 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=93.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++++|||+|||+|.++..+++. +++|+|+.++ +.++.+ + +..+..+. ..+++.+++||+|++..+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~-~~a~~~----~----~~~~~~d~-~~~~~~~~~fD~v~~~~~ 111 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMA-EIARKR----G----VFVLKGTA-ENLPLKDESFDFALMVTT 111 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHH-HHHHHT----T----CEEEECBT-TBCCSCTTCEEEEEEESC
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHH-HHHHhc----C----CEEEEccc-ccCCCCCCCeeEEEEcch
Confidence 4789999999999999888553 9999999998 555543 1 23333333 234566779999999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEecc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 167 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 167 (175)
+++.. +...+++++.++|+|||.+++..+................. .+.......+...+.++++++||++.++.+
T Consensus 112 l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 112 ICFVD---DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKS-VFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp GGGSS---CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC--CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred Hhhcc---CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCc-chhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 85554 45599999999999999999975443211100000000000 000011112358999999999999887754
Q ss_pred e
Q 030558 168 R 168 (175)
Q Consensus 168 ~ 168 (175)
.
T Consensus 188 ~ 188 (219)
T 1vlm_A 188 T 188 (219)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=114.36 Aligned_cols=107 Identities=9% Similarity=-0.049 Sum_probs=79.2
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCC
Q 030558 2 HHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNP 77 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 77 (175)
++..+.+|.+|||+|||+|.++..+|+..| .+|+|+|+++.|+ +.+.++.... .++..+..+..+ ..+...+
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~-~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~ 146 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVM-RDLLTVVRDR---RNIFPILGDARFPEKYRHLVE 146 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHH-HHHHHHSTTC---TTEEEEESCTTCGGGGTTTCC
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHhhHhh---cCeeEEEEeccCccccccccc
Confidence 455678899999999999999999998765 4699999999998 5555444331 234555555443 2345667
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++|+|++.... .++...++.++.+.|||||+++++
T Consensus 147 ~vDvVf~d~~~-----~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 147 GVDGLYADVAQ-----PEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp CEEEEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEEEeccC-----ChhHHHHHHHHHHhccCCCEEEEE
Confidence 89999864322 335568999999999999999885
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=119.12 Aligned_cols=149 Identities=15% Similarity=0.048 Sum_probs=83.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCC-hHHHHHHH---HHHHhhCCCCCCcceeeccCCCCCCCCCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYN-DQEIEDNI---AYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s-~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
.++.+|||||||+|.++..+++.. +.+|+|+|+| +.|+ +.+ +++....+. +.+.+..++...++...||.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml-~~A~~A~~~~~~~~~----~~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLF-DISKKIIKKPSKGGL----SNVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGH-HHHHHHTSCGGGTCC----SSEEEECCBTTBCCGGGTTC
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHH-HHHHHHHHHHHHcCC----CCeEEEEcCHHHhhhhccCe
Confidence 357889999999999999998643 6789999999 6676 444 444444444 23444444333332223344
Q ss_pred EEeCCcccCcccc-----hHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCC-CCCCCceEeeeeccCCCcchhHHHHH
Q 030558 82 ILASDILLYVKQY-----SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTE-GLPWPAFLMSWRRRIGKEDETIFFTS 154 (175)
Q Consensus 82 i~~~~~l~~~~~~-----~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (175)
|.+..+.+.++.. .+...+++++.++|||||++++......... ..+ ....+. +...+.. ..++.+.
T Consensus 98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~el~~~ 171 (225)
T 3p2e_A 98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPL----LSKAYFL--SEQYKAE 171 (225)
T ss_dssp EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------CCHHHHH--SHHHHHH
T ss_pred EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCC----CChhhcc--hHHHHHH
Confidence 4433333222221 1124789999999999999998421111100 000 000010 0111111 1358889
Q ss_pred HHHcCCeeEEec
Q 030558 155 CENAGLEVKHLG 166 (175)
Q Consensus 155 ~~~~g~~~~~~~ 166 (175)
++++||++....
T Consensus 172 l~~aGf~v~~~~ 183 (225)
T 3p2e_A 172 LSNSGFRIDDVK 183 (225)
T ss_dssp HHHHTCEEEEEE
T ss_pred HHHcCCCeeeee
Confidence 999999987764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=120.93 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=84.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++++|||||||+|.++..+++....+|+|+|+|+ ++ +.++++...++...++..+..+.. ..++++++||+|++
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~-~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~Ivs 137 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-IL-YQAMDIIRLNKLEDTITLIKGKIE-EVHLPVEKVDVIIS 137 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTT-TSCCSCSCEEEEEE
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HH-HHHHHHHHHcCCCCcEEEEEeeHH-HhcCCCCcEEEEEE
Confidence 3567889999999999999999987445899999997 87 777778777776445555544443 33555679999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
..+.+.......+..++.++.++|||||.++.
T Consensus 138 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 138 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 87554445455667899999999999998873
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-17 Score=120.42 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=80.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHh--CCCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCCCCCCCC------CC
Q 030558 8 ERRRCIELGSGTGALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDAFPIPN------PD 78 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~ 78 (175)
++.+|||||||+|..+..+++. .+.+|+|+|+|+.++ +.++++.... +...++..+..+.. .+++.+ ++
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMI-KTAEVIKEGSPDTYKNVSFKISSSD-DFKFLGADSVDKQK 113 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHH-HHHHHHHHHCC-CCTTEEEEECCTT-CCGGGCTTTTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHhccCCCCceEEEEcCHH-hCCccccccccCCC
Confidence 6789999999999999999974 378899999999998 6776666654 22234444444433 233344 79
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
||+|+++.++++. ++..+++++.++|+|||.+++..
T Consensus 114 fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 114 IDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp EEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999998555 45599999999999999998853
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=124.85 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=101.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.++..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+.++ ..||+|++
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~ 254 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFKPLP---VTADVVLL 254 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCcCC---CCCCEEEE
Confidence 3457899999999999999998875 568999999 9898 7777777766664455555555433222 34999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccc--cCCCCCCCCCCC-CCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT--KNEQGEGTEGLP-WPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
.++++++. .+....+++++.++|+|||++++... ............ ...+...... ....+..++.++++++||+
T Consensus 255 ~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~aGf~ 332 (374)
T 1qzz_A 255 SFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG-GRVRTRDEVVDLAGSAGLA 332 (374)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS-CCCCCHHHHHHHHHTTTEE
T ss_pred eccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCC-CcCCCHHHHHHHHHHCCCc
Confidence 99995554 34456899999999999999988755 221110000000 0000000000 1112458999999999998
Q ss_pred eEEec
Q 030558 162 VKHLG 166 (175)
Q Consensus 162 ~~~~~ 166 (175)
+.++.
T Consensus 333 ~~~~~ 337 (374)
T 1qzz_A 333 LASER 337 (374)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=107.93 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=86.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||+|||+|.++..+++. + +|+|+|+|+.|+ +. . .++..+..+..+ +..+++||+|+++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~-~~------~----~~~~~~~~d~~~--~~~~~~fD~i~~n~ 86 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRAL-ES------H----RGGNLVRADLLC--SINQESVDVVVFNP 86 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHH-HT------C----SSSCEEECSTTT--TBCGGGCSEEEECC
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHH-hc------c----cCCeEEECChhh--hcccCCCCEEEECC
Confidence 46789999999999999999887 4 999999999998 33 1 123344444333 34457999999987
Q ss_pred cccCcccc------hHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 87 ILLYVKQY------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 87 ~l~~~~~~------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
.++...+. .+...+++++.+.+ |||.+++..... .....+.+.++++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------~~~~~l~~~l~~~gf 141 (170)
T 3q87_B 87 PYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------NRPKEVLARLEERGY 141 (170)
T ss_dssp CCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------GCHHHHHHHHHHTTC
T ss_pred CCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------CCHHHHHHHHHHCCC
Confidence 76332211 12347888899888 999888852111 124788899999999
Q ss_pred eeEEecc
Q 030558 161 EVKHLGS 167 (175)
Q Consensus 161 ~~~~~~~ 167 (175)
++..+..
T Consensus 142 ~~~~~~~ 148 (170)
T 3q87_B 142 GTRILKV 148 (170)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 9777743
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-17 Score=122.50 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=101.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|..+..+++.. +.+++++|++ .++ +.++++....+...++..+..+..+. +++ +.||+|++.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVL-EVAKENARIQGVASRYHTIAGSAFEV-DYG-NDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHH-HHHHHHHHHHTCGGGEEEEESCTTTS-CCC-SCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHH-HHHHHHHHhcCCCcceEEEecccccC-CCC-CCCcEEEEc
Confidence 457899999999999999998875 5689999999 888 67776666555433344444443322 333 349999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCC-CCCC-CCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT-EGLP-WPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
++++++. .++...+++++.++|+|||++++........... .... ...+...........+.+++.++++++||++.
T Consensus 240 ~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 240 NFLHHFD-VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318 (335)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred chhccCC-HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence 9995553 4566799999999999999988875443221100 0000 00000000001111246899999999999877
Q ss_pred Eec
Q 030558 164 HLG 166 (175)
Q Consensus 164 ~~~ 166 (175)
++.
T Consensus 319 ~~~ 321 (335)
T 2r3s_A 319 QLH 321 (335)
T ss_dssp EEE
T ss_pred eEE
Confidence 653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=119.06 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=101.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|.++..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+. ++ ..+|+|++
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D~v~~ 262 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYKE-SY--PEADAVLF 262 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGH-HHHHHHHHHTTCTTTEEEEECCTTTS-CC--CCCSEEEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHH-HHHHHHHHhcCCCCCEEEEeCccccC-CC--CCCCEEEE
Confidence 3467899999999999999998875 568999999 9898 77777777666544455554444332 33 23499999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeee--ecc-CCCcchhHHHHHHHHcCCe
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSW--RRR-IGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~g~~ 161 (175)
..+++++. .++...+++++.++|+|||++++..................+.... .+. ....+.+++.++++++||+
T Consensus 263 ~~vlh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~ 341 (359)
T 1x19_A 263 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 341 (359)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCE
T ss_pred echhccCC-HHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCc
Confidence 99996554 3457799999999999999998875433221100000000000000 000 0002458999999999998
Q ss_pred eEEec
Q 030558 162 VKHLG 166 (175)
Q Consensus 162 ~~~~~ 166 (175)
+.++.
T Consensus 342 ~v~~~ 346 (359)
T 1x19_A 342 DVTMV 346 (359)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 76654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-17 Score=112.93 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=77.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
.+..+|||||||+|.+++.++... +.+|+|+|+|+.|+ +.++++...++...+ +.+ .+.. ....++||+|++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~l-eiar~~~~~~g~~~~---v~~--~d~~~~~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEI-AFLSSIIGKLKTTIK---YRF--LNKESDVYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHH-HHHHHHHHHSCCSSE---EEE--ECCHHHHTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCcc---EEE--ecccccCCCCCcChhhH
Confidence 347899999999999999996653 55899999999998 888888888777322 222 1221 234578999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
..++++. ++...++.++++.|+|||.++-
T Consensus 122 ~k~LHlL---~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 122 LKMLPVL---KQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp ETCHHHH---HHTTCCHHHHHHTCEEEEEEEE
T ss_pred hhHHHhh---hhhHHHHHHHHHHhCCCCEEEE
Confidence 9999444 4555888899999999995555
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=113.33 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=79.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCC-CCCCC-ccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP-IPNPD-WDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-fD~i~~ 84 (175)
++.+|||+|||+|.+++.+++....+|+++|+|+.++ +.++++...++.. .++..+..+..+..+ ..+++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHH-HHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 6789999999999999987777456899999999998 7888888776652 233333333222222 23568 999999
Q ss_pred CCcccCcccchHHHHHHHHH--HhhcCCCCceeeccccC
Q 030558 85 SDILLYVKQYSNLIKSLSVL--LKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l--~~~l~pgG~~~~~~~~~ 121 (175)
...+ +. .....+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~-~~---~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPF-HF---NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCS-SS---CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-CC---ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8774 43 3455788888 66899999998875443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=122.70 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=85.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
....++++|||||||+|.+++.+++.+..+|+|+|+| .|+ +.++++...++...++..+..+..+ .+++ ++||+|+
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~~D~Iv 134 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMA-DHARALVKANNLDHIVEVIEGSVED-ISLP-EKVDVII 134 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTH-HHHHHHHHHTTCTTTEEEEESCGGG-CCCS-SCEEEEE
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHH-HHHHHHHHHcCCCCeEEEEECchhh-cCcC-CcceEEE
Confidence 3456789999999999999999999844589999999 898 7778888887775445555544432 2333 7899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..+.++......+..+++++.+.|+|||.+++.
T Consensus 135 ~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp ECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred EcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 9776655554456778999999999999988876
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-17 Score=121.28 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=81.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCC------CCCCcceeeccCCCCC---CC--CC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG------ITPALPHIKHSWGDAF---PI--PN 76 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~--~~ 76 (175)
++.+|||+|||+|.++..+++..+.+|+++|+|+.++ +.++++..... ....+..+..+..+.. ++ .+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSV-KQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5789999999999999999876577899999999998 55554443321 1112333333333221 13 34
Q ss_pred CCccEEEeCCcccCc-ccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 77 PDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~-~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
++||+|+++.++++. .+.++...+++++.++|+|||.+++.++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 589999999998555 45567789999999999999999998553
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-16 Score=110.09 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=78.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~~ 84 (175)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.++ +.++++....+. .++..+..+..+ ++ +.+++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l-~~a~~~~~~~~~-~~v~~~~~d~~~-~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGV-PNIKLLWVDGSD-LTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-SSEEEEECCSSC-GGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHH-HHHHHHHHHcCC-CCEEEEeCCHHH-HHhhcCCCCCCEEEE
Confidence 36889999999999999998875 56899999999998 777777766555 344444444433 22 45678999999
Q ss_pred CCcccCcccc-----hHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQY-----SNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~-----~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+....+.... .....+++++.++|+|||.+++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 7553111000 012479999999999999988863
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-17 Score=116.21 Aligned_cols=151 Identities=12% Similarity=0.042 Sum_probs=88.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHH---HHhhCCCCCCcceeeccCCCCCCCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAY---NSTTNGITPALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
..++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++..++. +....+. .++..+..+.. .+++.+++ |.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~-~l~~~~~~-d~ 101 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAE-RLPPLSGV-GE 101 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCST-TCCSCCCE-EE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchh-hCCCCCCC-CE
Confidence 3467899999999999999999876 67899999999998333322 2222232 22333333332 24555555 77
Q ss_pred EEeCCcccCcc--cchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEeeeeccCCCcchhHHHHHHHHc
Q 030558 82 ILASDILLYVK--QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 82 i~~~~~l~~~~--~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
|.......... ..++...+++++.++|||||.+++......... .......+.. ...+ ....+.+.++++
T Consensus 102 v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~l~~~l~~a 174 (218)
T 3mq2_A 102 LHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEP----TPDS---ADEWLAPRYAEA 174 (218)
T ss_dssp EEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCC----CHHH---HHHHHHHHHHHT
T ss_pred EEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCcc----chHH---HHHHHHHHHHHc
Confidence 76432211100 122235999999999999999998632211110 0000000000 0000 124578889999
Q ss_pred CCeeEEec
Q 030558 159 GLEVKHLG 166 (175)
Q Consensus 159 g~~~~~~~ 166 (175)
||++.++.
T Consensus 175 Gf~i~~~~ 182 (218)
T 3mq2_A 175 GWKLADCR 182 (218)
T ss_dssp TEEEEEEE
T ss_pred CCCceeee
Confidence 99987764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=122.04 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=102.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+..+ ..||+|++.
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~~ 256 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAIILS 256 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHH-HHHHHHHHhcCCCCceEEEeCCCCCCCC---CCccEEEEc
Confidence 457899999999999999998875 567999999 8887 7777777766664455555555443222 359999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecccc-CCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK-NEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
.+++++. .++...+++++.++|+|||++++.... ..........................+.+++.++++++||++.+
T Consensus 257 ~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (360)
T 1tw3_A 257 FVLLNWP-DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 335 (360)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEE
Confidence 9995554 344568999999999999999987544 22111000000000000000001112468999999999998776
Q ss_pred ec
Q 030558 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 336 ~~ 337 (360)
T 1tw3_A 336 VR 337 (360)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-17 Score=121.43 Aligned_cols=150 Identities=11% Similarity=0.031 Sum_probs=98.5
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
.+|||+|||+|..+..+++.. +.+++++|+ +.++ +.++++....+...++..+..+..+ +. +++||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~--~~-~~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSL-GVARDNLSSLLAGERVSLVGGDMLQ--EV-PSNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCT-HHHHHHTHHHHHTTSEEEEESCTTT--CC-CSSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHH-HHHHHHHhhcCCCCcEEEecCCCCC--CC-CCCCCEEEEchhc
Confidence 799999999999999998875 568999999 8887 6666555443333344555544433 22 3679999999999
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
+++. .+....+++++.++|+|||++++..................+...........+..++.++++++||++.++
T Consensus 244 ~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 319 (334)
T 2ip2_A 244 GDLD-EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERI 319 (334)
T ss_dssp GGCC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred cCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEE
Confidence 5554 455679999999999999999988443322111000000000000000011124689999999999987665
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=112.75 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=81.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++....+|+++|+|+.++ +.++++... . ..+..+..+.. .+++.+++||+|++..
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~-~~a~~~~~~--~-~~i~~~~~d~~-~~~~~~~~fD~v~~~~ 115 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVV-AAMQACYAH--V-PQLRWETMDVR-KLDFPSASFDVVLEKG 115 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHH-HHHHHHTTT--C-TTCEEEECCTT-SCCSCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHH-HHHHHhccc--C-CCcEEEEcchh-cCCCCCCcccEEEECc
Confidence 46789999999999999999887434899999999998 666655442 1 22333433332 2356677999999988
Q ss_pred cccCcc------------cchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 87 ILLYVK------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 87 ~l~~~~------------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
++.+.. ...+...+++++.++|+|||++++..+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred chhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 773332 23466799999999999999999875543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=112.13 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=81.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++++|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++....+...++..+..+..+.....+++||+|+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAI-ANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHH-HHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3467899999999999999998874 36899999999998 77787877765533344444333223224557999999
Q ss_pred eCCcccC------cccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLY------VKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~------~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+...++. .....+...+++++.++|+|||++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 8765411 1112345689999999999999998864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=111.64 Aligned_cols=102 Identities=17% Similarity=0.079 Sum_probs=68.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CCCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~ 81 (175)
..++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++...+...... ++..+..+..+. .++ .++||+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~----~v~~~~~d~~~~~~~~~~-~~~fD~ 129 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDASKPWKYSGI-VEKVDL 129 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCTTCGGGTTTT-CCCEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC----CeEEEEcCCCCchhhccc-ccceeE
Confidence 3468899999999999999998875 3579999999998733333222221 122222222221 222 378999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++.. . ...+...+++++.++|||||++++.
T Consensus 130 V~~~~-~----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 130 IYQDI-A----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEECC-C----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEec-c----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99872 1 1233445699999999999999886
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-16 Score=109.90 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=97.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC-CccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP-DWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fD~i~~ 84 (175)
.++.+|||||||+|.+++.+++.. ..+|+|+|+++.++ +.+++|...+++..++.....+..+.+ +.+ .||+|+.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~i~~~~~d~l~~l--~~~~~~D~Ivi 90 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPY-QSAVKNVEAHGLKEKIQVRLANGLAAF--EETDQVSVITI 90 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGC--CGGGCCCEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEECchhhhc--ccCcCCCEEEE
Confidence 357899999999999999999974 45799999999998 889999999888544444443333222 323 6999887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..+- -..+..++.+..+.|+|+|++++. +. .....+.+.+.+.||.+.+
T Consensus 91 aG~G-----g~~i~~Il~~~~~~L~~~~~lVlq---------------~~-----------~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 91 AGMG-----GRLIARILEEGLGKLANVERLILQ---------------PN-----------NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp EEEC-----HHHHHHHHHHTGGGCTTCCEEEEE---------------ES-----------SCHHHHHHHHHHTTEEEEE
T ss_pred cCCC-----hHHHHHHHHHHHHHhCCCCEEEEE---------------CC-----------CCHHHHHHHHHHCCCEEEE
Confidence 6553 223568899999999999987773 00 1247888999999998665
Q ss_pred e-----cceEEEE
Q 030558 165 L-----GSRVYCI 172 (175)
Q Consensus 165 ~-----~~~~~~i 172 (175)
- ..+.|.|
T Consensus 140 e~lv~e~~~~Yei 152 (225)
T 3kr9_A 140 ESILEEAGKFYEI 152 (225)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEECCEEEEE
Confidence 4 5566654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-17 Score=122.14 Aligned_cols=152 Identities=11% Similarity=0.096 Sum_probs=93.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|..+..+++.. +.+++++|++ .++ . +.+....+...++..+..+..+ +.+ +||+|++
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-~--~~~~~~~~~~~~v~~~~~d~~~--~~p--~~D~v~~ 253 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVV-A--RHRLDAPDVAGRWKVVEGDFLR--EVP--HADVHVL 253 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHH-T--TCCCCCGGGTTSEEEEECCTTT--CCC--CCSEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHh-h--cccccccCCCCCeEEEecCCCC--CCC--CCcEEEE
Confidence 3457899999999999999998865 5578999994 444 2 2222222222233444333322 222 8999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..+++++. .++...++++++++|||||++++..................+...........+.+++.++++++||++.+
T Consensus 254 ~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 332 (348)
T 3lst_A 254 KRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR 332 (348)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEE
Confidence 99996655 44457999999999999999998744332221100000000000000001112468999999999999777
Q ss_pred ec
Q 030558 165 LG 166 (175)
Q Consensus 165 ~~ 166 (175)
+.
T Consensus 333 ~~ 334 (348)
T 3lst_A 333 VV 334 (348)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-17 Score=113.32 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=79.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++....+|+++|+|+.++ +.++++....+...++..+..+..+..+..+++||+|++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~ 107 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 107 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence 346789999999999999999887456899999999998 7888888776653233333333222222234679999998
Q ss_pred CcccCcccchHHHHHHHHHH--hhcCCCCceeeccccC
Q 030558 86 DILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGHLTKN 121 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~--~~l~pgG~~~~~~~~~ 121 (175)
..+ +. .....+++.+. ++|+|||.+++.....
T Consensus 108 ~~~-~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 108 PPY-AK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CSS-HH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCC-Cc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 764 22 23446777776 9999999999875443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=115.87 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=89.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---CCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~i 82 (175)
.++.+|||+|||+|..+..++... +.+|+++|+|+.++ +.++++....+.. .+..+..+..+ ++. .+++||+|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLE-NTTFCHDRAET-FGQRKDVRESYDIV 145 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCS-SEEEEESCHHH-HTTCTTTTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CEEEEeccHHH-hcccccccCCccEE
Confidence 367899999999999999998643 67899999999998 7777777766652 23333332211 222 25689999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
++..+ . ++..+++++.++|+|||.+++.... ........+.+.+++.||++
T Consensus 146 ~~~~~----~---~~~~~l~~~~~~LkpgG~l~~~~g~----------------------~~~~~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 146 TARAV----A---RLSVLSELCLPLVKKNGLFVALKAA----------------------SAEEELNAGKKAITTLGGEL 196 (240)
T ss_dssp EEECC----S---CHHHHHHHHGGGEEEEEEEEEEECC-----------------------CHHHHHHHHHHHHHTTEEE
T ss_pred EEecc----C---CHHHHHHHHHHhcCCCCEEEEEeCC----------------------CchHHHHHHHHHHHHcCCeE
Confidence 99663 2 3459999999999999988774110 00111356778889999987
Q ss_pred EEe
Q 030558 163 KHL 165 (175)
Q Consensus 163 ~~~ 165 (175)
.++
T Consensus 197 ~~~ 199 (240)
T 1xdz_A 197 ENI 199 (240)
T ss_dssp EEE
T ss_pred eEE
Confidence 665
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=112.46 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=75.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.++..+ +. +|+++|+|+.++ +.++++. ..+..+..+. ..+++.+++||+|++..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~-~~a~~~~------~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAML-AVGRRRA------PEATWVRAWG-EALPFPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHH-HHHHHHC------TTSEEECCCT-TSCCSCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHH-HHHHHhC------CCcEEEEccc-ccCCCCCCcEEEEEEcC
Confidence 6789999999999998877 55 899999999998 5555543 1123333222 23456678999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
++++.. +...+++++.++|+|||.+++..+..
T Consensus 104 ~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 104 TLEFVE---DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CTTTCS---CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred hhhhcC---CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 995554 45599999999999999999986543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=108.31 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=81.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-CcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++....+... ++..+..+..+. ..+++||+|+++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~ 126 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAI-KLAKENIKLNNLDNYDIRVVHSDLYEN--VKDRKYNKIITN 126 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHTTCTTSCEEEEECSTTTT--CTTSCEEEEEEC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECchhcc--cccCCceEEEEC
Confidence 36789999999999999999888 88999999999998 77777777665521 144444444332 335689999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++ ++. ......+++++.++|+|||.+++.
T Consensus 127 ~~~-~~~-~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 127 PPI-RAG-KEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp CCS-TTC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCc-ccc-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 876 321 345679999999999999988885
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=105.83 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=90.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++ .+.+|+++|+++.++ +.++++...++. .++..+..+..+ ++++++||+|++.
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~-~~a~~~~~~~~~-~~~~~~~~d~~~--~~~~~~~D~i~~~ 107 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAI-EVTKQNLAKFNI-KNCQIIKGRAED--VLDKLEFNKAFIG 107 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHH-HHHHHHHHHTTC-CSEEEEESCHHH--HGGGCCCSEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHH-HHHHHHHHHcCC-CcEEEEECCccc--cccCCCCcEEEEC
Confidence 34678999999999999999988 588999999999998 777777777665 233344333322 3344689999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.+ ..+..+++++.+. |||.+++.... ......+.+.+++.|+.++.+
T Consensus 108 ~~-------~~~~~~l~~~~~~--~gG~l~~~~~~------------------------~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 108 GT-------KNIEKIIEILDKK--KINHIVANTIV------------------------LENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp SC-------SCHHHHHHHHHHT--TCCEEEEEESC------------------------HHHHHHHHHHHHHTTCEEEEE
T ss_pred Cc-------ccHHHHHHHHhhC--CCCEEEEEecc------------------------cccHHHHHHHHHHcCCeEEEE
Confidence 77 2344889999988 99988885221 112367888899999887765
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=112.82 Aligned_cols=108 Identities=9% Similarity=0.040 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.+++.+++....+|+++|+|+.++ +.++++...++. .++..+..+..+.++...++||+|++...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l-~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVS-QQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHH-HHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 6789999999999999987777556899999999998 788888877665 33333333322223444568999999877
Q ss_pred ccCcccchHHHHHHHHHHh--hcCCCCceeeccccC
Q 030558 88 LLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHLTKN 121 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~~~~~ 121 (175)
+ +.. ....+++.+.+ +|+|||.+++.....
T Consensus 132 ~-~~~---~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 132 F-RRG---LLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S-STT---THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-CCC---cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3 433 34477777765 599999998875443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=111.27 Aligned_cols=102 Identities=11% Similarity=0.023 Sum_probs=72.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CCCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~ 81 (175)
..++.+|||+|||+|.++..+++..+ .+|+++|+|+.++ +.++.+.... .++..+..+..+. .++. ++||+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~-~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~D~ 146 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAER---ENIIPILGDANKPQEYANIV-EKVDV 146 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHH-HHHHHHhhcC---CCeEEEECCCCCcccccccC-ccEEE
Confidence 44678999999999999999998853 6899999999998 6666554432 2233333333221 2333 68999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+.. .........+++++.+.|+|||.+++.
T Consensus 147 v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 147 IYED-----VAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEe-----cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 9932 233434457899999999999999986
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=119.61 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=84.6
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
++..++|++|||||||+|.+++.+|+.++.+|+|+|.|+ ++ +.++++...|++..++..+..+..+ +.+ +++||+|
T Consensus 78 ~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~-~~l-pe~~Dvi 153 (376)
T 4hc4_A 78 NWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVET-VEL-PEQVDAI 153 (376)
T ss_dssp THHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTT-CCC-SSCEEEE
T ss_pred CHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeee-ecC-CccccEE
Confidence 445678999999999999999999998677899999996 76 7788888999887666666655433 222 3689999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++..+-+.......+..++....+.|+|||.++-.
T Consensus 154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 154 VSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp ECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred EeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 99554433343335568888888999999977654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=114.37 Aligned_cols=108 Identities=10% Similarity=-0.074 Sum_probs=77.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCC-CCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIP-NPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~fD~ 81 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++... .++..+..+..+.. ++. ...||+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~-~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~ 127 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSAL-EIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDAN 127 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHH-HHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHH-HHHHHhCcc----cCceEEECcccccccccccccccCccE
Confidence 346789999999999999999988 55999999999998 666555421 12333333322210 011 124999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
|++..++++. ..++...+++++.++|+|||.+++....
T Consensus 128 v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 128 IYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp EEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999998554 4557789999999999999998887443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=108.32 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=91.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++.. .+|+++|+++.++ +.++++....+....+.....+..+.++. .++||+|++.
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~ 107 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAI-STTEMNLQRHGLGDNVTLMEGDAPEALCK-IPDIDIAVVG 107 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHH-HHHHHHHHHTTCCTTEEEEESCHHHHHTT-SCCEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHH-HHHHHHHHHcCCCcceEEEecCHHHhccc-CCCCCEEEEC
Confidence 4567899999999999999998874 8899999999998 77777776665533344443333221111 1489999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.++ . .+..+++++.++|+|||.+++..+. ......+.+.+++.||.++.+
T Consensus 108 ~~~---~---~~~~~l~~~~~~l~~gG~l~~~~~~------------------------~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 108 GSG---G---ELQEILRIIKDKLKPGGRIIVTAIL------------------------LETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp CCT---T---CHHHHHHHHHHTEEEEEEEEEEECB------------------------HHHHHHHHHHHHHTTCCCEEE
T ss_pred Cch---H---HHHHHHHHHHHhcCCCcEEEEEecC------------------------cchHHHHHHHHHHCCCceEEE
Confidence 776 2 2348999999999999988875221 112367788889999865443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=114.62 Aligned_cols=101 Identities=18% Similarity=0.343 Sum_probs=77.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++... ..+..+. ..+++.+++||+|++..+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l-~~a~~~~~~-------~~~~~d~-~~~~~~~~~fD~v~~~~~ 123 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEML-EVAREKGVK-------NVVEAKA-EDLPFPSGAFEAVLALGD 123 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHH-HHHHHHTCS-------CEEECCT-TSCCSCTTCEEEEEECSS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHH-HHHHhhcCC-------CEEECcH-HHCCCCCCCEEEEEEcch
Confidence 6789999999999999999887 78999999999998 555544321 1222222 334566789999999887
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+.+... ++..+++++.++|+|||.+++..+.
T Consensus 124 ~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 124 VLSYVE--NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHCS--CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhhccc--cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 645532 3669999999999999999987543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=115.30 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=90.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~ 83 (175)
.++.+|||||||+|..++.++... +.+|+++|+|+.++ +.++.+....+.. ++..+..+..+... ..+++||+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKV-AFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEE
Confidence 467899999999999999998874 67899999999998 7888888776662 23333333222111 2247899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+..+- ++..+++.+.++|+|||++++.... ........+.+.++..|+.+.
T Consensus 157 s~a~~-------~~~~ll~~~~~~LkpgG~l~~~~g~----------------------~~~~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 157 ARAVA-------PLCVLSELLLPFLEVGGAAVAMKGP----------------------RVEEELAPLPPALERLGGRLG 207 (249)
T ss_dssp EESSC-------CHHHHHHHHGGGEEEEEEEEEEECS----------------------CCHHHHTTHHHHHHHHTEEEE
T ss_pred ECCcC-------CHHHHHHHHHHHcCCCeEEEEEeCC----------------------CcHHHHHHHHHHHHHcCCeEE
Confidence 97542 3348999999999999987774111 001112556777888898876
Q ss_pred Ee
Q 030558 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
++
T Consensus 208 ~~ 209 (249)
T 3g89_A 208 EV 209 (249)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=107.99 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=97.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||||||+|.+++.+++.. ..+|+|+|+++.++ +.+++|...+++..++.....+..+..+ +.+.||+|+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al-~~A~~N~~~~gl~~~I~~~~gD~l~~~~-~~~~~D~Ivia 97 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPY-QSALKNVSEHGLTSKIDVRLANGLSAFE-EADNIDTITIC 97 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC-GGGCCCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhccc-cccccCEEEEe
Confidence 357899999999999999999974 44799999999998 8899999999885555554444333222 22379998876
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.+- -+.+..++.+..+.++++|++++. | - .....+.+++.+.||.+.+-
T Consensus 98 GmG-----g~lI~~IL~~~~~~l~~~~~lIlq---------------p--------~---~~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 98 GMG-----GRLIADILNNDIDKLQHVKTLVLQ---------------P--------N---NREDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp EEC-----HHHHHHHHHHTGGGGTTCCEEEEE---------------E--------S---SCHHHHHHHHHHTTEEEEEE
T ss_pred CCc-----hHHHHHHHHHHHHHhCcCCEEEEE---------------C--------C---CChHHHHHHHHHCCCEEEEE
Confidence 664 234568888889999999977774 1 0 01478889999999986654
Q ss_pred -----cceEEEE
Q 030558 166 -----GSRVYCI 172 (175)
Q Consensus 166 -----~~~~~~i 172 (175)
..+.|.|
T Consensus 147 ~lv~e~~~~Yei 158 (230)
T 3lec_A 147 DILTENDKRYEI 158 (230)
T ss_dssp EEEEC--CEEEE
T ss_pred EEEEECCEEEEE
Confidence 3566655
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-16 Score=116.44 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=83.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||+|||+|.++..+++....+|+|+|+| .++ +.++++...++...++..+..+.. ..++++++||+|++.
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~-~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~Ivs~ 112 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SII-EMAKELVELNGFSDKITLLRGKLE-DVHLPFPKVDIIISE 112 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THH-HHHHHHHHHTTCTTTEEEEESCTT-TSCCSSSCEEEEEEC
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHH-HHHHHHHHHcCCCCCEEEEECchh-hccCCCCcccEEEEe
Confidence 45788999999999999999988744589999999 587 777878777777545555544443 234455789999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.++......+..++.++.+.|+|||.++..
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 113 WMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred CchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 76555444555668999999999999988743
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=118.09 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=82.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++...++.. +..+..+..+. ...+++||+|+++.
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al-~~A~~n~~~~~~~--v~~~~~D~~~~-~~~~~~fD~Ii~np 306 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASV-LSLQKGLEANALK--AQALHSDVDEA-LTEEARFDIIVTNP 306 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHH-HHHHHHHHHTTCC--CEEEECSTTTT-SCTTCCEEEEEECC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHcCCC--eEEEEcchhhc-cccCCCeEEEEECC
Confidence 36789999999999999999887 78999999999998 8888888887762 33333333222 22357999999998
Q ss_pred cccCc--ccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 87 ILLYV--KQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 87 ~l~~~--~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.+++. ...+....+++++.++|+|||.++++.
T Consensus 307 p~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 307 PFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp CCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 87331 224566799999999999999999863
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=111.75 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=77.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CC--CCCCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FP--IPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~fD~ 81 (175)
++.+|||||||+|.++..+|+.. +.+|+|+|+|+.++ +.++++....+. .++.+..++. ++ +++++||.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l-~~a~~~~~~~~l----~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGV-GACLASAHEEGL----SNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHTTC----SSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHH-HHHHHHHHHhCC----CcEEEEECCHHHHHHHHcCCCChhe
Confidence 46789999999999999998875 45799999999998 777777776665 2344444432 22 56789999
Q ss_pred EEeCCcccCcccchHH------HHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASDILLYVKQYSNL------IKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~------~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|++.....+ +..... ..+++++.++|||||.+++.+
T Consensus 109 v~~~~~~p~-~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 109 VQLFFPDPW-HKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEEESCCCC-CSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCc-cchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 998743311 211111 259999999999999999874
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=115.68 Aligned_cols=153 Identities=8% Similarity=0.022 Sum_probs=92.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-C-CCC---CCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-F-PIP---NPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~---~~~fD~ 81 (175)
++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++...++...++..+..+..+. . ++. +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF-NYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 57799999999999999888764 67899999999998 78888888777644455555443331 2 233 268999
Q ss_pred EEeCCcccCcc-c-----------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchh
Q 030558 82 ILASDILLYVK-Q-----------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 149 (175)
Q Consensus 82 i~~~~~l~~~~-~-----------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (175)
|+++..++... . .+....++.+++++|||||.+.+...-..... ....... +........ ....
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~-~~l~~~g-~~~~~~~~~--~~~~ 219 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL-QLKKRLR-WYSCMLGKK--CSLA 219 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH-HHGGGBS-CEEEEESST--TSHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH-hcccceE-EEEECCCCh--hHHH
Confidence 99987753222 0 01123567888999999998887622111000 0001111 222111111 1236
Q ss_pred HHHHHHHHcCCeeEEe
Q 030558 150 IFFTSCENAGLEVKHL 165 (175)
Q Consensus 150 ~~~~~~~~~g~~~~~~ 165 (175)
.+.++++++||+..++
T Consensus 220 ~~~~~l~~~Gf~~v~~ 235 (254)
T 2h00_A 220 PLKEELRIQGVPKVTY 235 (254)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCceEE
Confidence 7888999999975443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=113.53 Aligned_cols=111 Identities=7% Similarity=0.029 Sum_probs=81.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh---CCCCCCcceeeccCCCCC------CCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHSWGDAF------PIPN 76 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~ 76 (175)
.++.+|||+|||+|.+++.+++.. +.+|+++|+++.++ +.++++... +++..++..+..+..+.. .+.+
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~-~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMA-EFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHH-HHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 357899999999999999999886 56899999999998 888888877 666434455554444331 2346
Q ss_pred CCccEEEeCCcccCc---------------ccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 77 PDWDLILASDILLYV---------------KQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~---------------~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
++||+|+++..++.. .....+..+++.+.++|+|||++++..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 789999998665222 111235689999999999999998863
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=110.63 Aligned_cols=128 Identities=14% Similarity=0.210 Sum_probs=91.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.++ +.++++....+.. ++..+..++.+. ..+++||+|+++.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l-~~a~~n~~~~~~~-~v~~~~~d~~~~--~~~~~fD~Iv~np 184 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV-SLAQRNAQHLAIK-NIHILQSDWFSA--LAGQQFAMIVSNP 184 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH-HHHHHHHHHHTCC-SEEEECCSTTGG--GTTCCEEEEEECC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-ceEEEEcchhhh--cccCCccEEEECC
Confidence 56799999999999999998765 56899999999998 7778787766652 333333333322 2356899999985
Q ss_pred ccc-------------Cccc---------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCC
Q 030558 87 ILL-------------YVKQ---------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIG 144 (175)
Q Consensus 87 ~l~-------------~~~~---------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (175)
.+. +.+. ......+++++.+.|+|||.+++....
T Consensus 185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------ 240 (276)
T 2b3t_A 185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------------------------ 240 (276)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------------------------
T ss_pred CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------------------
Confidence 431 1110 134578999999999999988884210
Q ss_pred CcchhHHHHHHHHcCCeeEE
Q 030558 145 KEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 145 ~~~~~~~~~~~~~~g~~~~~ 164 (175)
.....+.+.++++||+..+
T Consensus 241 -~~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 241 -QQGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp -SCHHHHHHHHHHTTCTTCC
T ss_pred -hHHHHHHHHHHHCCCcEEE
Confidence 1247788889999997433
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-17 Score=117.34 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=81.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||||||+|.++..+++....+|+|+|+|+.|+ +.+.++......... ..+.....+.++ ...||.+.+..
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml-~~a~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~d~~~~D~ 111 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQL-AWKIRSDERVVVMEQ-FNFRNAVLADFE--QGRPSFTSIDV 111 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCC-CHHHHTCTTEEEECS-CCGGGCCGGGCC--SCCCSEEEECC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHH-HHHHHhCcccccccc-ceEEEeCHhHcC--cCCCCEEEEEE
Confidence 35789999999999999999888435899999999998 444332211000000 011111111111 11245444433
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
++.. . ..+++++.++|||||.+++..................+.....+. .+..++.+.++++||++..+.
T Consensus 112 v~~~---l---~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~---~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 112 SFIS---L---DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQ---MTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp SSSC---G---GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHH---HHHHHHHHHHHHHTEEEEEEE
T ss_pred Ehhh---H---HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhH---HHHHHHHHHHHHCCCEEEEEE
Confidence 3311 1 389999999999999998863111110000000000000000011 135789999999999988774
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=105.71 Aligned_cols=139 Identities=9% Similarity=-0.016 Sum_probs=82.5
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDW 79 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f 79 (175)
....+|.+|||+|||+|..+..+++.. ..+|+|+|+++.|++...+...... ++..+..+..... ....++|
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~----nv~~i~~Da~~~~~~~~~~~~~ 147 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP----NIFPLLADARFPQSYKSVVENV 147 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCT----TEEEEECCTTCGGGTTTTCCCE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC----CeEEEEcccccchhhhccccce
Confidence 346679999999999999999998864 3479999999998733322222221 2233333322111 1224689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
|+|++.... + .....+...+.+.|||||++++++...-... .. ........-.+.++++|
T Consensus 148 D~I~~d~a~---~--~~~~il~~~~~~~LkpGG~lvisik~~~~d~-t~--------------~~~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 148 DVLYVDIAQ---P--DQTDIAIYNAKFFLKVNGDMLLVIKARSIDV-TK--------------DPKEIYKTEVEKLENSN 207 (232)
T ss_dssp EEEEECCCC---T--THHHHHHHHHHHHEEEEEEEEEEEC--------C--------------CSSSSTTHHHHHHHHTT
T ss_pred EEEEecCCC---h--hHHHHHHHHHHHhCCCCeEEEEEEccCCccc-CC--------------CHHHHHHHHHHHHHHCC
Confidence 999987543 2 2222344555669999999998743221000 00 00111244556777889
Q ss_pred CeeEEec
Q 030558 160 LEVKHLG 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
|++.+..
T Consensus 208 f~~~~~~ 214 (232)
T 3id6_C 208 FETIQII 214 (232)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9877653
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-16 Score=110.79 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=76.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-----CCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f 79 (175)
.++++|||||||+|..++.+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++. ..++|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHH-HHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 467899999999999999998853 67899999999998 77887877766633344443332222222 12689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|++.... ........+++.+ ++|+|||.+++.
T Consensus 136 D~V~~d~~~---~~~~~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 136 DMVFLDHWK---DRYLPDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp SEEEECSCG---GGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred EEEEEcCCc---ccchHHHHHHHhc-cccCCCeEEEEe
Confidence 999997665 2233444677777 999999988874
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=106.59 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=76.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~~ 84 (175)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.++ +.++++....+. .++..+..+..+ ++ +.+++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l-~~a~~~~~~~~~-~nv~~~~~d~~~-l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEA-QNVKLLNIDADT-LTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCC-SSEEEECCCGGG-HHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHH-HHHHHHHHHcCC-CCEEEEeCCHHH-HHhhcCcCCcCEEEE
Confidence 46789999999999999998875 57899999999998 777777776655 223333333222 22 45678999987
Q ss_pred CCcccCcccc-----hHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVKQY-----SNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~~~-----~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.....+.... .....+++++.++|+|||.+++.+
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 6432111000 012488999999999999998863
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=107.89 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=83.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+ +.+|+++|+|+. .+..+..+.. .+++.+++||+|++..
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~-----------------~~~~~~~d~~-~~~~~~~~fD~v~~~~ 123 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI----RNPVHCFDLASL-----------------DPRVTVCDMA-QVPLEDESVDVAVFCL 123 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS-----------------STTEEESCTT-SCSCCTTCEEEEEEES
T ss_pred CCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC-----------------CceEEEeccc-cCCCCCCCEeEEEEeh
Confidence 35689999999999998777 478999999986 1122333322 2456678999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
++ |+ ++...+++++.++|+|||.+++..... .. .+...+.+.++++||++....
T Consensus 124 ~l-~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~--------------------~~--~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 124 SL-MG---TNIRDFLEEANRVLKPGGLLKVAEVSS--------------------RF--EDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp CC-CS---SCHHHHHHHHHHHEEEEEEEEEEECGG--------------------GC--SCHHHHHHHHHHTTEEEEEEE
T ss_pred hc-cc---cCHHHHHHHHHHhCCCCeEEEEEEcCC--------------------CC--CCHHHHHHHHHHCCCEEEEEe
Confidence 98 43 355699999999999999988863221 01 135889999999999987753
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=115.30 Aligned_cols=152 Identities=16% Similarity=0.085 Sum_probs=97.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.....+|+|||||+|..+..+++.. +.+++..|. |.++ +.++++....+ ..++..+ .+|....+...+|+|++
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~-~~a~~~~~~~~-~~rv~~~---~gD~~~~~~~~~D~~~~ 250 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVV-WTAKQHFSFQE-EEQIDFQ---EGDFFKDPLPEADLYIL 250 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHH-HHHHHHSCC---CCSEEEE---ESCTTTSCCCCCSEEEE
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHH-HHHHHhhhhcc-cCceeee---cCccccCCCCCceEEEe
Confidence 4456789999999999999998875 556888887 5576 66665554333 2344444 44444333456899999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCC-CCCCCCceE-eeeeccCCCcchhHHHHHHHHcCCee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT-EGLPWPAFL-MSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
..++++|. .++..++|+++++.|+|||++++...-..+.... .....-.+. ...... ...+.++|.++++++||+.
T Consensus 251 ~~vlh~~~-d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g-~ert~~e~~~ll~~AGf~~ 328 (353)
T 4a6d_A 251 ARVLHDWA-DGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEG-QERTPTHYHMLLSSAGFRD 328 (353)
T ss_dssp ESSGGGSC-HHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSC-CCCCHHHHHHHHHHHTCEE
T ss_pred eeecccCC-HHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC-cCCCHHHHHHHHHHCCCce
Confidence 99996665 4566789999999999999999985433221110 000000000 000010 1124689999999999987
Q ss_pred EEe
Q 030558 163 KHL 165 (175)
Q Consensus 163 ~~~ 165 (175)
.++
T Consensus 329 v~v 331 (353)
T 4a6d_A 329 FQF 331 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-17 Score=130.86 Aligned_cols=154 Identities=12% Similarity=0.125 Sum_probs=99.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--C--CCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--F--PIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~fD~i~ 83 (175)
.+.+|||||||.|.++..||+. |.+|+|+|.++.+| +.++......+. ..+.+..++. + ...+++||+|+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i-~~a~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~fD~v~ 139 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENI-NVCRALAEENPD----FAAEFRVGRIEEVIAALEEGEFDLAI 139 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHTSTT----SEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHH-HHHHHHHHhcCC----CceEEEECCHHHHhhhccCCCccEEE
Confidence 4679999999999999999987 88999999999998 777766665553 1334433332 1 24567999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
+..+++|..+.... ..+..+++.+++++..++......... ...+.. -..|.... .+..|.+++.+.|..+
T Consensus 140 ~~e~~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~p~~----~~~~~~~i---~~~~~~~~~~~~g~~~ 211 (569)
T 4azs_A 140 GLSVFHHIVHLHGI-DEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQ----PDDPRELI---EQCAFYRLIGEFDTHL 211 (569)
T ss_dssp EESCHHHHHHHHCH-HHHHHHHHHHHHHSSEEEEECCCTTSSSGGGGGS----CSSGGGGT---TTSSEEEEEEEECCSS
T ss_pred ECcchhcCCCHHHH-HHHHHHHHHhccccceeeEEeccccccccccCCC----CccHHHhc---CHHHHHHHHHHcCCcc
Confidence 99999777654332 334567778888887666522221111 000000 00011111 1244556667788888
Q ss_pred EEecceEEEEecC
Q 030558 163 KHLGSRVYCIKLR 175 (175)
Q Consensus 163 ~~~~~~~~~i~~~ 175 (175)
..+..++|++.++
T Consensus 212 ~~~~~~~~~~s~~ 224 (569)
T 4azs_A 212 SPVPRPMYLVSNH 224 (569)
T ss_dssp SSCCEEEEEEESS
T ss_pred ccCCCceeeccCc
Confidence 8888888888654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=107.02 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=96.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||||||+|.+++.+++.. ..+|+|+|+++.++ +.+++|...+++..++.....+..+... +..+||+|++.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-~~A~~N~~~~gl~~~I~v~~gD~l~~~~-~~~~~D~Ivia 97 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPF-QSAQKQVRSSGLTEQIDVRKGNGLAVIE-KKDAIDTIVIA 97 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTTCTTTEEEEECSGGGGCC-GGGCCCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCceEEEEecchhhccC-ccccccEEEEe
Confidence 357899999999999999999974 34799999999998 8899999998885444444433322221 12369999876
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.+- -.-+..++.+..+.|++++++++. + . .....+.+++.+.||.+.+-
T Consensus 98 gmG-----g~lI~~IL~~~~~~L~~~~~lIlq---------------~--------~---~~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 98 GMG-----GTLIRTILEEGAAKLAGVTKLILQ---------------P--------N---IAAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp EEC-----HHHHHHHHHHTGGGGTTCCEEEEE---------------E--------S---SCHHHHHHHHHHHTEEEEEE
T ss_pred CCc-----hHHHHHHHHHHHHHhCCCCEEEEE---------------c--------C---CChHHHHHHHHHCCCEEEEE
Confidence 554 234568888999999999877774 0 0 12478889999999986332
Q ss_pred -----cceEEEE
Q 030558 166 -----GSRVYCI 172 (175)
Q Consensus 166 -----~~~~~~i 172 (175)
.++.|.|
T Consensus 147 ~lv~e~~k~Yei 158 (244)
T 3gnl_A 147 AILREDNKVYEI 158 (244)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEEECCEEEEE
Confidence 5566654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-16 Score=118.25 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=80.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~ 84 (175)
..+.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.++++...++.... ..+.+.+++.. ++.+++||+|++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al-~~Ar~n~~~ngl~~~-~~v~~~~~D~~~~~~~~~fD~Ii~ 298 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSRLNVETNMPEAL-DRCEFMINNALSGVEPFRFNAVLC 298 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCGGGG-GGEEEEECSTTTTCCTTCEEEEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHH-HHHHHHHHHcCCCcC-ceEEEEechhhccCCCCCeeEEEE
Confidence 345899999999999999999986 67899999999998 788888877665211 12333444433 345679999999
Q ss_pred CCcccCcc--cchHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYVK--QYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~~--~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+..+++.. .......+++++.++|+|||+++++.
T Consensus 299 nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 299 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 98874321 12234478999999999999998863
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-17 Score=111.64 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=78.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
.++++|||+|||+|.++..+++....+|+++|+++.++ +.++++...++...++..+..+..+.. +..+++||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 46789999999999999998886557899999999998 777777776654223333333332211 11257899999
Q ss_pred eCCcccCcccchHHHHHHHHH--HhhcCCCCceeeccccC
Q 030558 84 ASDILLYVKQYSNLIKSLSVL--LKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l--~~~l~pgG~~~~~~~~~ 121 (175)
+...+ +.... ...++.+ .++|+|||.+++.....
T Consensus 122 ~~~~~-~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPY-AKQEI---VSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp ECCCG-GGCCH---HHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECCCC-CchhH---HHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 98774 43333 3666666 88899999998875444
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=111.94 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=79.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~ 84 (175)
.++++|||||||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++ ..+++||+|++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMI-QYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 467899999999999999998843 67899999999998 7888888777764444444444433333 33679999997
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.... .....+++++.+.|+|||.+++.
T Consensus 149 ~~~~------~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 149 DAAK------AQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ETTS------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCcH------HHHHHHHHHHHHhcCCCeEEEEe
Confidence 6432 23448999999999999988773
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=110.91 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=78.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--CCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~ 81 (175)
..++++|||||||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++.. .++||+
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA-QVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 3467899999999999999998875 56899999999998 788888877776444444444332222222 348999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++... ......+++++.++|+|||.+++.
T Consensus 140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 140 IFIDAD------KPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEECCc------hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 998543 234458999999999999988774
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=113.59 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=77.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-CcceeeccCCCCCCC---CCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPI---PNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~fD~i~ 83 (175)
++.+|||+|||+|.+++.+++. +.+|+++|+|+.++ +.+++|...+++.. ++..+..+..+..+. ..++||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al-~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAI-GWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4679999999999999999887 56999999999998 88888888777632 133333222111111 146899999
Q ss_pred eCCcccCc-------ccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYV-------KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~-------~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+....+.. ....+...+++++.++|+|||.+++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 96553221 12345678999999999999987764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=115.94 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=82.5
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++++|||||||+|.++..+++....+|+|+|+|+ ++ +.++++...++...++..+..+..+ .+. +++||+|++
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~~-~~~-~~~~D~Ivs 122 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEE-VSL-PEQVDIIIS 122 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTT-CCC-SSCEEEEEE
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchhh-CCC-CCceeEEEE
Confidence 3457899999999999999999887556899999996 76 7777777777764455555444432 222 358999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+++++. .+.+...+.++.+.|+|||.+++.
T Consensus 123 ~~~~~~~~-~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 123 EPMGYMLF-NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCCBTTBT-TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred eCchhcCC-hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 98875554 455668888999999999998876
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-17 Score=116.82 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.++ +.++.+....+...++..+..+..+.. .+++||+|+++.+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKI-ALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECCC
Confidence 6889999999999999999887 68999999999998 788888777665333334333332221 4568999999988
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.+..... ..+.++.++|+|||.+++.
T Consensus 154 ~~~~~~~~---~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 154 WGGPDYAT---AETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CSSGGGGG---SSSBCTTTSCSSCHHHHHH
T ss_pred cCCcchhh---hHHHHHHhhcCCcceeHHH
Confidence 74443322 4777899999999987765
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=110.38 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=75.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCCCCCCCCCCccE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
...++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++.... +. .++..+..+..+ ++.+++||+
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~g~-~~v~~~~~d~~~--~~~~~~fD~ 182 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDI-GNVRTSRSDIAD--FISDQMYDA 182 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCC-TTEEEECSCTTT--CCCSCCEEE
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-CcEEEEECchhc--cCcCCCccE
Confidence 34567899999999999999998862 67899999999998 7777777665 43 223333333322 344568999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|++. .++. ..+++++.++|+|||++++..
T Consensus 183 Vi~~-----~~~~---~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 183 VIAD-----IPDP---WNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp EEEC-----CSCG---GGSHHHHHHTEEEEEEEEEEE
T ss_pred EEEc-----CcCH---HHHHHHHHHHcCCCCEEEEEe
Confidence 9983 2323 388999999999999988864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=116.13 Aligned_cols=106 Identities=10% Similarity=0.179 Sum_probs=81.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+++|||+|||+|.++..+++.. ..+|+++|+|+.++ +.++++...++.. . .+..++..+..+++||+|+++.
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l-~~a~~~~~~~~~~--~---~~~~~d~~~~~~~~fD~Iv~~~ 269 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAV-EASRATLAANGVE--G---EVFASNVFSEVKGRFDMIISNP 269 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHH-HHHHHHHHHTTCC--C---EEEECSTTTTCCSCEEEEEECC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC--C---EEEEccccccccCCeeEEEECC
Confidence 46799999999999999998875 35899999999998 7778787776652 1 2233444444567999999998
Q ss_pred cccCc--ccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYV--KQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~--~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++++. ...+....+++++.++|+|||.+++...
T Consensus 270 ~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 270 PFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 87321 1345667999999999999999988643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-16 Score=110.49 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=75.8
Q ss_pred CcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCC-CCCCCccEEEeC
Q 030558 10 RRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP-IPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (175)
.+|||||||+|..++.+++.. +.+|+++|+++.++ +.++++....+.. .++..+..+..+.++ ..+++||+|++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQ-RQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 489999999999999999865 57899999999998 8888888887763 233333322222222 236799999986
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... .+...+++++.+.|+|||.+++.
T Consensus 137 ~~~------~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 137 VSP------MDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp CCT------TTHHHHHHHHHHHEEEEEEEEET
T ss_pred CcH------HHHHHHHHHHHHHcCCCcEEEEe
Confidence 432 23447899999999999988884
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=106.54 Aligned_cols=102 Identities=10% Similarity=0.063 Sum_probs=77.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++....+.. ++..+..+..+. ...+++||+|++.
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~~~~~D~i~~~ 150 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQ-WQARRRLKNLDLH-NVSTRHGDGWQG-WQARAPFDAIIVT 150 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCGGGC-CGGGCCEEEEEES
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHH-HHHHHHHHHcCCC-ceEEEECCcccC-CccCCCccEEEEc
Confidence 456889999999999999999988 88999999999998 7777777776652 233333333222 2235689999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.++.+.. +++.+.|+|||++++....
T Consensus 151 ~~~~~~~---------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 151 AAPPEIP---------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SBCSSCC---------THHHHTEEEEEEEEEEECS
T ss_pred cchhhhh---------HHHHHhcccCcEEEEEEcC
Confidence 8884443 2588999999999998655
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=120.15 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=80.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhC--CCCCCcceeeccCCCC--CCCCCCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIKHSWGDA--FPIPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~fD~ 81 (175)
++.+|||||||+|.++..+++..+ .+|+|+|+|+.|+ +.++++.... ........+.+..++. +++.+++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emL-e~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGL-ARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHH-HHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 688999999999999999988743 6899999999998 5655533321 1011223444444443 4556689999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
|++..++.|.. .+....++++++++|+|| .+++.++..
T Consensus 800 VV~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHME-EDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 99999995554 345567999999999999 777765443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-16 Score=107.96 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=75.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i~~ 84 (175)
++++|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+. ++..+..+..+..+ ...++||+|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAV-RLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHH-HHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHH-HHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 6789999999999999999887 66699999999998 777777766554 23333333222111 11348999999
Q ss_pred CCcccCcccchHHHHHHHHHH--hhcCCCCceeeccccC
Q 030558 85 SDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGHLTKN 121 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~--~~l~pgG~~~~~~~~~ 121 (175)
+.++ + ...+ .+++.+. ++|+|||.+++.....
T Consensus 117 ~~~~-~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 117 APPY-A-MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCCT-T-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCCC-c-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 8875 3 4344 5556665 9999999998875544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=117.13 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=76.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHH-------hhCCCCCCcceeeccCCCCCC--C
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNS-------TTNGITPALPHIKHSWGDAFP--I 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~ 74 (175)
...++.+|||||||+|.+++.++...+.. |+|+|+++.++ +.++++. ...+.. ...+.+..+|... +
T Consensus 170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~l-elAr~n~e~frkr~~~~Gl~--~~rVefi~GD~~~lp~ 246 (438)
T 3uwp_A 170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWYGKK--HAEYTLERGDFLSEEW 246 (438)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHHTBC--CCEEEEEECCTTSHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHHHHHHHHhCCC--CCCeEEEECcccCCcc
Confidence 34578999999999999999998876665 99999999887 4444432 222331 1234444455433 2
Q ss_pred CC--CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PN--PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~--~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+ ..||+|+++..+ +. +++...|+++++.|||||++++.
T Consensus 247 ~d~~~~aDVVf~Nn~~-F~---pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 247 RERIANTSVIFVNNFA-FG---PEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp HHHHHTCSEEEECCTT-CC---HHHHHHHHHHHTTSCTTCEEEES
T ss_pred ccccCCccEEEEcccc-cC---chHHHHHHHHHHcCCCCcEEEEe
Confidence 22 479999998775 43 45668899999999999999988
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=107.90 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=89.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++.... +. .++.....+..+ .++.+++||+|
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~~~~D~v 170 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL-AQAERNVRAFWQV-ENVRFHLGKLEE-AELEEAAYDGV 170 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCCC-CCEEEEESCGGG-CCCCTTCEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcCC-CCEEEEECchhh-cCCCCCCcCEE
Confidence 4578899999999999999998873 57899999999998 7777666554 42 233444333322 23456789999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
++. .++. ..+++++.++|+|||.+++..+.. .....+.+.++++||..
T Consensus 171 ~~~-----~~~~---~~~l~~~~~~L~~gG~l~~~~~~~------------------------~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 171 ALD-----LMEP---WKVLEKAALALKPDRFLVAYLPNI------------------------TQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EEE-----SSCG---GGGHHHHHHHEEEEEEEEEEESCH------------------------HHHHHHHHHHTTTTEEE
T ss_pred EEC-----CcCH---HHHHHHHHHhCCCCCEEEEEeCCH------------------------HHHHHHHHHHHHCCCce
Confidence 983 1222 388999999999999888853221 01256667788888875
Q ss_pred EEecc
Q 030558 163 KHLGS 167 (175)
Q Consensus 163 ~~~~~ 167 (175)
.+..+
T Consensus 219 ~~~~~ 223 (258)
T 2pwy_A 219 ERVLE 223 (258)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=106.47 Aligned_cols=131 Identities=12% Similarity=0.052 Sum_probs=92.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (175)
.+|.+|||+|||+|.+++.+|+.++.+|+++|+|+.++ +.+++|...|++...+..+..+. ..+ ..+.||.|++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-~~~~~N~~~N~v~~~v~~~~~D~---~~~~~~~~~D~Vi~~ 199 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDN---RDFPGENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCT---TTCCCCSCEEEEEEC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCcH---HHhccccCCCEEEEC
Confidence 46899999999999999999998667899999999998 99999999999865555544333 332 34689999987
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
... . .. ..+..+.++++|||.+.+.. ............+.+.+.+++.|++++.+
T Consensus 200 ~p~-~---~~---~~l~~a~~~lk~gG~ih~~~------------------~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 200 YVV-R---TH---EFIPKALSIAKDGAIIHYHN------------------TVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CCS-S---GG---GGHHHHHHHEEEEEEEEEEE------------------EEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred CCC-c---HH---HHHHHHHHHcCCCCEEEEEe------------------eecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 553 1 12 56777889999999654420 00011111112366778888999886654
Q ss_pred c
Q 030558 166 G 166 (175)
Q Consensus 166 ~ 166 (175)
.
T Consensus 255 ~ 255 (278)
T 3k6r_A 255 N 255 (278)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=106.97 Aligned_cols=105 Identities=8% Similarity=0.025 Sum_probs=73.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCcc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD 80 (175)
...++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.+.++...+ ..+..+..+..+. ++..+++||
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i-~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG-RDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEE
Confidence 34568899999999999999999874 46899999999887 3333333332 1223333333321 233467899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|++... .......++.++.+.|+|||.+++..
T Consensus 150 ~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 150 VIFADVA-----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999544 23333467889999999999998853
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=109.84 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=76.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+. +.+++||+|+
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~ 167 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFA-KLAWENIKWAGFDDRVTIKLKDIYEG--IEEENVDHVI 167 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHTCTTTEEEECSCGGGC--CCCCSEEEEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHH-HHHHHHHHHcCCCCceEEEECchhhc--cCCCCcCEEE
Confidence 4568899999999999999998873 67899999999998 77777777666533344444333322 4566899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++. +.. ..+++++.++|+|||.+++.
T Consensus 168 ~~~-----~~~---~~~l~~~~~~L~~gG~l~~~ 193 (255)
T 3mb5_A 168 LDL-----PQP---ERVVEHAAKALKPGGFFVAY 193 (255)
T ss_dssp ECS-----SCG---GGGHHHHHHHEEEEEEEEEE
T ss_pred ECC-----CCH---HHHHHHHHHHcCCCCEEEEE
Confidence 842 222 37899999999999988875
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=115.16 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=76.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHH-------HHHHhhCCCCCCcceeeccCCCCCC----
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNI-------AYNSTTNGITPALPHIKHSWGDAFP---- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---- 73 (175)
..++.+|||||||+|.+++.+++..+ .+|+|+|+++.++ +.+ +.+....+.. ...+.+..++...
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l-~~A~~Ml~~ar~~~~~~Gl~--~~nV~~i~gD~~~~~~~ 316 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYGMR--LNNVEFSLKKSFVDNNR 316 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTTBC--CCCEEEEESSCSTTCHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHhHHHHHHHHHHcCCC--CCceEEEEcCccccccc
Confidence 34688999999999999999998654 4699999999987 555 6666665531 1233333332221
Q ss_pred C--CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 74 I--PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~--~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+ ..++||+|+++.++ +. +++..+++++.++|||||++++.
T Consensus 317 ~~~~~~~FDvIvvn~~l-~~---~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 317 VAELIPQCDVILVNNFL-FD---EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHHHGGGCSEEEECCTT-CC---HHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccCCCCEEEEeCcc-cc---ccHHHHHHHHHHhCCCCeEEEEe
Confidence 1 24689999998776 32 45568899999999999999887
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-16 Score=111.33 Aligned_cols=109 Identities=15% Similarity=0.021 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHh--C-CCcEEEEeCChHHHHHHHHHHHhhC---CCCCC---------------------
Q 030558 8 ERRRCIELGSGTGALAIFLRKA--M-NLDITTSDYNDQEIEDNIAYNSTTN---GITPA--------------------- 60 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~--~-~~~v~~~D~s~~~l~~~~~~~~~~~---~~~~~--------------------- 60 (175)
++.+|||+|||+|.++..+++. . +.+|+|+|+|+.++ +.++++.... +....
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPL-ELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHH-HHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHH-HHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 4678999999999999999886 2 56899999999998 6666665543 22000
Q ss_pred ----cc-------------eeeccCCCCCCC----CCCCccEEEeCCcccCccc------chHHHHHHHHHHhhcCCCCc
Q 030558 61 ----LP-------------HIKHSWGDAFPI----PNPDWDLILASDILLYVKQ------YSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 61 ----~~-------------~~~~~~~~~~~~----~~~~fD~i~~~~~l~~~~~------~~~~~~~l~~l~~~l~pgG~ 113 (175)
+. ....+..+..+. ..++||+|+++..+..... .+....+++++.++|+|||.
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 12 222222221110 2348999999876533222 24567999999999999999
Q ss_pred eeec
Q 030558 114 QVGH 117 (175)
Q Consensus 114 ~~~~ 117 (175)
++++
T Consensus 210 l~~~ 213 (250)
T 1o9g_A 210 IAVT 213 (250)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9984
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=104.90 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++....+.. .+..+..++.+.. ..++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLE-NIEPVQSRVEEFP--SEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCS-SEEEEECCTTTSC--CCSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEEecchhhCC--ccCCcCEEEEec
Confidence 47899999999999999998864 67899999999998 7777777776652 2334433333222 346899999864
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+ . ++..+++++.+.|+|||.+++.
T Consensus 141 ~----~---~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 141 F----A---SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp S----S---SHHHHHHHHTTSEEEEEEEEEE
T ss_pred c----C---CHHHHHHHHHHhcCCCcEEEEE
Confidence 3 2 3449999999999999988885
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=107.29 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=77.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C---CCCCcc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I---PNPDWD 80 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~fD 80 (175)
.++++|||||||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++ . ..++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA-DIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 467899999999999999998875 56899999999998 7778787776664334444433322111 1 125799
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|++.... +....+++++.++|+|||.+++.
T Consensus 136 ~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 136 FIFIDADK------QNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp EEEECSCG------GGHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEEcCCc------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 99986542 23448999999999999977774
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-16 Score=109.03 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=61.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC-----CCcc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-----PDWD 80 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~fD 80 (175)
.++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++...++. ++..+..+..+ ++.+ ++||
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~~~~~d~~~--~~~~~~~~~~~fD 103 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDAL-AVARRNAERFGA--VVDWAAADGIE--WLIERAERGRPWH 103 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHHHHH--HHHHHHHTTCCBS
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhCC--ceEEEEcchHh--hhhhhhhccCccc
Confidence 467899999999999999999875 45899999999998 677666655443 22333333222 2223 7899
Q ss_pred EEEeCCcccCcccc-----------------------hHHHHHHHHHHhhcCCCCc-eee
Q 030558 81 LILASDILLYVKQY-----------------------SNLIKSLSVLLKSYKPKDS-QVG 116 (175)
Q Consensus 81 ~i~~~~~l~~~~~~-----------------------~~~~~~l~~l~~~l~pgG~-~~~ 116 (175)
+|+++..++..... .....+++++.++|+|||+ +++
T Consensus 104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99997665322211 0115888999999999998 444
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=108.63 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=78.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--CCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~i~ 83 (175)
.++.+|||+|||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+..+.. +++||+|+
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRY-EEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 467899999999999999998876 57899999999998 777777777665333444433332222222 46899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.... . +...+++++.+.|+|||.+++.
T Consensus 132 ~~~~~---~---~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 132 IDAAK---G---QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EEGGG---S---CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ECCCH---H---HHHHHHHHHHHHcCCCeEEEEE
Confidence 87554 2 4458999999999999998886
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-15 Score=108.86 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=74.7
Q ss_pred CCcEEEeCCCccH----HHHHHHHhCC-----CcEEEEeCChHHHHHHHHHHHhh-----------------------CC
Q 030558 9 RRRCIELGSGTGA----LAIFLRKAMN-----LDITTSDYNDQEIEDNIAYNSTT-----------------------NG 56 (175)
Q Consensus 9 ~~~vLDlGcG~G~----~~~~l~~~~~-----~~v~~~D~s~~~l~~~~~~~~~~-----------------------~~ 56 (175)
+.+|+|+|||||. +++.+++..+ .+|+|+|+|+.|| +.++++... .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHH-HHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 4689999999998 5666666522 5899999999999 666554310 00
Q ss_pred -C------CCCcceeeccCCCCCCCC-CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 57 -I------TPALPHIKHSWGDAFPIP-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 57 -~------~~~~~~~~~~~~~~~~~~-~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
. ...+.+...++.+ .+++ .++||+|+|.+++.|. +.+...++++++++.|+|||.+++...+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~-~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred ceeechhhcccCeEEecccCC-CCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 0 0122333333333 2233 4689999999998555 3566789999999999999999886433
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=104.23 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=72.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~ 81 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.+..+.... .++..+..+..+.. ....++||+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEER---RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHH-HHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceE
Confidence 4568899999999999999998874 36899999999998 5555555443 23344444433311 122458999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++... .......+++++.++|+|||.+++.
T Consensus 147 v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 147 IFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 997644 1223335599999999999998886
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=108.95 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=77.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-----CCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f 79 (175)
.++++|||+|||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++. ..++|
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST-ALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 467899999999999999998864 57899999999998 78888887777643344444333222111 12789
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|++... ......+++++.++|+|||.+++.
T Consensus 142 D~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 142 DLIYIDAD------KANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99997543 234558999999999999988874
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=117.87 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=82.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||||||+|.+++.+++....+|+|+|+|+ ++ +.++++...+++..++..+..++.+ .+. +++||+|++.
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l-~~A~~~~~~~gl~~~v~~~~~d~~~-~~~-~~~fD~Ivs~ 231 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEE-VSL-PEQVDIIISE 231 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HH-HHHHHHHHHTTCTTTEEEEESCTTT-CCC-SSCEEEEECC
T ss_pred hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HH-HHHHHHHHHcCCCCcEEEEECchhh-Ccc-CCCeEEEEEe
Confidence 346789999999999999999887566899999998 87 7788888877775555555555433 222 3589999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+++++. .+.+...+.++.+.|+|||.+++.
T Consensus 232 ~~~~~~~-~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 232 PMGYMLF-NERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCHHHHT-CHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CchHhcC-cHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8875554 455667888899999999988865
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-15 Score=108.24 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=87.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+. +.+++||+|+
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~V~ 186 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA-KLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALF 186 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHH-HHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCEEE
Confidence 4467899999999999999998874 57899999999998 77777777655422333333333222 3456899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+.. +.. ..+++++.++|+|||.+++..+.. .....+.+.++++||...
T Consensus 187 ~~~-----~~~---~~~l~~~~~~L~pgG~l~~~~~~~------------------------~~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 187 LDV-----PDP---WNYIDKCWEALKGGGRFATVCPTT------------------------NQVQETLKKLQELPFIRI 234 (277)
T ss_dssp ECC-----SCG---GGTHHHHHHHEEEEEEEEEEESSH------------------------HHHHHHHHHHHHSSEEEE
T ss_pred ECC-----cCH---HHHHHHHHHHcCCCCEEEEEeCCH------------------------HHHHHHHHHHHHCCCcee
Confidence 842 222 388999999999999888853211 012556677777888755
Q ss_pred Ee
Q 030558 164 HL 165 (175)
Q Consensus 164 ~~ 165 (175)
+.
T Consensus 235 ~~ 236 (277)
T 1o54_A 235 EV 236 (277)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.3e-15 Score=104.74 Aligned_cols=101 Identities=8% Similarity=0.080 Sum_probs=74.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++....+ .+..+..+..+..+ .+++||+|++.
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~---~v~~~~~d~~~~~~-~~~~fD~v~~~ 141 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMY-NYASKLLSYYN---NIKLILGDGTLGYE-EEKPYDRVVVW 141 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHH-HHHHHHHTTCS---SEEEEESCGGGCCG-GGCCEEEEEES
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHH-HHHHHHHhhcC---CeEEEECCcccccc-cCCCccEEEEC
Confidence 346789999999999999999887 58999999999998 67666655433 23333333322222 35689999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.++++.. +++.++|+|||++++.....
T Consensus 142 ~~~~~~~---------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 142 ATAPTLL---------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SBBSSCC---------HHHHHTEEEEEEEEEEECSS
T ss_pred CcHHHHH---------HHHHHHcCCCcEEEEEEcCC
Confidence 9884433 36889999999999985443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-15 Score=107.63 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=76.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC------CCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 78 (175)
.++++|||||||+|..++.+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++. .+++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 467899999999999999999875 57899999999998 77787777766532333332222121221 1578
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|++.... ......++++.++|+|||.+++.
T Consensus 157 fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 157 YDFIFVDADK------DNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp BSEEEECSCS------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEEEEcCch------HHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999986432 23458999999999999988874
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-15 Score=105.89 Aligned_cols=108 Identities=9% Similarity=-0.007 Sum_probs=72.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh------CCCCCCcceeeccCCCCCC--CCCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT------NGITPALPHIKHSWGDAFP--IPNPD 78 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~ 78 (175)
++.+|||||||+|.++..+|+.. +.+|+|+|+|+.|+ +.++++... .+. .++..+..+..+.++ +.+++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l-~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS-DYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHH-HHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence 45689999999999999998875 56899999999998 555544332 222 233333333333233 56789
Q ss_pred ccEEEeCCcccCcccc--h----HHHHHHHHHHhhcCCCCceeecc
Q 030558 79 WDLILASDILLYVKQY--S----NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~--~----~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
||.|++...- .+... . ....+++++.++|+|||.+++.+
T Consensus 124 ~D~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 9999875332 11100 0 01379999999999999999874
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-15 Score=109.85 Aligned_cols=136 Identities=11% Similarity=0.033 Sum_probs=85.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh---CCCCCCcceeeccCCCCCCC-CCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT---NGITPALPHIKHSWGDAFPI-PNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~fD~ 81 (175)
.++++|||||||+|..+..+++.. ..+|+++|+++.++ +.++++... .....++..+..+..+.... .+++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVM-EQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 356899999999999999998764 46899999999998 666655421 11111222222222111111 3678999
Q ss_pred EEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcC
Q 030558 82 ILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
|++.......+ ...+ ..+++++.++|+|||.+++..... +........+.+.++++|
T Consensus 173 Ii~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------------~~~~~~~~~~~~~l~~~G 231 (304)
T 3bwc_A 173 VIIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESI--------------------WLDLELIEKMSRFIRETG 231 (304)
T ss_dssp EEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCT--------------------TTCHHHHHHHHHHHHHHT
T ss_pred EEECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------------ccchHHHHHHHHHHHhCC
Confidence 99965542211 1112 488999999999999888852211 111123477888899999
Q ss_pred CeeEE
Q 030558 160 LEVKH 164 (175)
Q Consensus 160 ~~~~~ 164 (175)
|....
T Consensus 232 F~~v~ 236 (304)
T 3bwc_A 232 FASVQ 236 (304)
T ss_dssp CSEEE
T ss_pred CCcEE
Confidence 97554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-15 Score=107.21 Aligned_cols=103 Identities=10% Similarity=0.065 Sum_probs=74.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.++++|||+|||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++..++ ||+|++
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNV-EHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFM 132 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEE
Confidence 467899999999999999998865 56899999999998 77777766555422233333333222233345 999998
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
... ......+++++.++|+|||.+++.
T Consensus 133 ~~~------~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 133 DCD------VFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp ETT------TSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCC------hhhhHHHHHHHHHhcCCCeEEEEE
Confidence 633 223458999999999999988874
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-15 Score=112.56 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=93.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|..+..+++.. +.+++++|+ +.++ +.++. ..++..+..+..+ +.+. . |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~-------~~~v~~~~~d~~~--~~p~-~-D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-QDAPA-------FSGVEHLGGDMFD--GVPK-G-DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCC-------CTTEEEEECCTTT--CCCC-C-SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-Hhhhh-------cCCCEEEecCCCC--CCCC-C-CEEEE
Confidence 3456899999999999999998875 567999999 7776 33221 1233444444333 3333 3 99999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC-----CCceEeeeeccCCCcchhHHHHHHHHcC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-----WPAFLMSWRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (175)
..+++++. .++...++++++++|+|||++++............... ...............+.+++.++++++|
T Consensus 268 ~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AG 346 (368)
T 3reo_A 268 KWICHDWS-DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASG 346 (368)
T ss_dssp ESCGGGBC-HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTT
T ss_pred echhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCC
Confidence 99996565 45677999999999999999998744332221110000 0000000000011124589999999999
Q ss_pred CeeEEec
Q 030558 160 LEVKHLG 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
|++.++.
T Consensus 347 F~~v~~~ 353 (368)
T 3reo_A 347 FRGFKVA 353 (368)
T ss_dssp CCEEEEE
T ss_pred CeeeEEE
Confidence 9876663
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=111.77 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=93.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|..+..+++.. +.+++++|+ +.++ +.++. ..++..+..+..+ +++.+ |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~-------~~~v~~~~~D~~~--~~p~~--D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI-SEAPQ-------FPGVTHVGGDMFK--EVPSG--DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCC-------CTTEEEEECCTTT--CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH-Hhhhh-------cCCeEEEeCCcCC--CCCCC--CEEEe
Confidence 3456899999999999999998865 567999999 7676 33221 1233444444333 33333 99999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC-C---CceEee-eeccCCCcchhHHHHHHHHcC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-W---PAFLMS-WRRRIGKEDETIFFTSCENAG 159 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g 159 (175)
..+++++. .++...+++++++.|+|||++++............... . ..+... ....-...+.+++.++++++|
T Consensus 266 ~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AG 344 (364)
T 3p9c_A 266 KWILHDWS-DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAG 344 (364)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTT
T ss_pred hHHhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCC
Confidence 99996665 45677999999999999999999744332221110000 0 000000 000111124689999999999
Q ss_pred CeeEEec
Q 030558 160 LEVKHLG 166 (175)
Q Consensus 160 ~~~~~~~ 166 (175)
|+..++.
T Consensus 345 F~~v~~~ 351 (364)
T 3p9c_A 345 FTGVKST 351 (364)
T ss_dssp CCEEEEE
T ss_pred CceEEEE
Confidence 9876653
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=104.12 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=77.5
Q ss_pred CCcEEEeCCCc---cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----------CC
Q 030558 9 RRRCIELGSGT---GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----------PI 74 (175)
Q Consensus 9 ~~~vLDlGcG~---G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 74 (175)
..+|||||||+ |.++..+++.. +.+|+++|+|+.|+ +.++++... ..++..+..+..+.. .+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l-~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVL-THGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHH-HHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence 47899999999 98877665543 67899999999998 666655532 123344444433210 12
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..++||+|++..+++++.+. +...++++++++|+|||.+++....
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 22489999999999666543 5779999999999999999998544
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=9e-15 Score=103.73 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=75.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++..+ .+|+++|+++.++ +.++++....+.. .+.....+.....+ ..++||+|+
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~fD~v~ 151 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA-EKAERTLRKLGYD-NVIVIVGDGTLGYE-PLAPYDRIY 151 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHTCT-TEEEEESCGGGCCG-GGCCEEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEEECCcccCCC-CCCCeeEEE
Confidence 34678999999999999999988764 7899999999998 6666666554441 22333222211111 256899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+..++.+.. +++.++|+|||++++.....
T Consensus 152 ~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 152 TTAAGPKIP---------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp ESSBBSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred ECCchHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence 999884433 47899999999999986543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=106.18 Aligned_cols=109 Identities=11% Similarity=0.231 Sum_probs=79.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCc---cEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW---DLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---D~i~~ 84 (175)
++.+|||+|||+|.+++.+++..+.+|+++|+|+.++ +.+++|...++...++..+..++.+.. .++| |+|++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al-~~A~~n~~~~~l~~~v~~~~~D~~~~~---~~~f~~~D~Ivs 198 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAV-EIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMILS 198 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHH-HHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCceEEEECcchhhc---ccccCCCCEEEE
Confidence 5679999999999999999887567899999999998 888888888777444555555554322 2478 99999
Q ss_pred CCccc-----------Ccccc-----hHHHHHHHHHH-hhcCCCCceeecccc
Q 030558 85 SDILL-----------YVKQY-----SNLIKSLSVLL-KSYKPKDSQVGHLTK 120 (175)
Q Consensus 85 ~~~l~-----------~~~~~-----~~~~~~l~~l~-~~l~pgG~~~~~~~~ 120 (175)
+.... |.+.. .+...+++++. +.++|||.+++.+..
T Consensus 199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 74321 11110 01127899999 999999999886443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=97.53 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=89.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++....+|+++|+|+.++ +.++.+...++. .+..+. ++...+ +++||+|+++.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~--~~~~~~---~d~~~~-~~~~D~v~~~~ 120 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKG--KFKVFI---GDVSEF-NSRVDIVIMNP 120 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTT--SEEEEE---SCGGGC-CCCCSEEEECC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHcCC--CEEEEE---CchHHc-CCCCCEEEEcC
Confidence 46789999999999999999887445799999999998 777777776554 233333 332222 24899999988
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
.+ +.........+++++.+.+ |+ +++.. . ........+.+.+++.|++++.+.
T Consensus 121 p~-~~~~~~~~~~~l~~~~~~l--~~-~~~~~--------------------~---~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 121 PF-GSQRKHADRPFLLKAFEIS--DV-VYSIH--------------------L---AKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp CC-SSSSTTTTHHHHHHHHHHC--SE-EEEEE--------------------E---CCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CC-ccccCCchHHHHHHHHHhc--Cc-EEEEE--------------------e---CCcCCHHHHHHHHHHCCCeEEEEE
Confidence 86 3333334457888888887 43 33321 0 001123556677888999988887
Q ss_pred ceEEE
Q 030558 167 SRVYC 171 (175)
Q Consensus 167 ~~~~~ 171 (175)
...+.
T Consensus 174 ~~~~~ 178 (207)
T 1wy7_A 174 TTKIE 178 (207)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 76665
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=102.56 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=77.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++....+....+..+..+..+.. ..+++||+|+++.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~ 166 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFY-KTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHAAFVDV 166 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSEEEECS
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHH-HHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccEEEECC
Confidence 46889999999999999999998 88999999999998 777777766555333444433333221 1356899999842
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
++. ..+++++.++|+|||++++..+.
T Consensus 167 -----~~~---~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 167 -----REP---WHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp -----SCG---GGGHHHHHHHBCTTCEEEEEESS
T ss_pred -----cCH---HHHHHHHHHHcCCCCEEEEEeCC
Confidence 222 37889999999999999997553
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=108.49 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=75.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++..+ .+|+++|+|+.++ +.++++....+.. .+..+..+..+.. ..+++||+|+
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~g~~-~v~~~~~d~~~~~-~~~~~fD~Iv 149 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIE-NVIFVCGDGYYGV-PEFSPYDVIF 149 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCGGGCC-GGGCCEEEEE
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CeEEEECChhhcc-ccCCCeEEEE
Confidence 44688999999999999999988743 3499999999998 7777777776652 2333333332222 2356899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+..++.+.. +++.+.|||||++++....
T Consensus 150 ~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEVP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence 999984333 4678899999999997543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=103.73 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=75.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCCCCCC-CccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNP-DWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++..+.+|+++|+++.++ +.++++....+.. .+.+..++ ..++.++ .||+|+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~Ii 163 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGVK----NVHVILGDGSKGFPPKAPYDVII 163 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTCC----SEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHH-HHHHHHHHHcCCC----CcEEEECCcccCCCCCCCccEEE
Confidence 346789999999999999999887558899999999998 7777777765552 23333333 2233333 599999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+..++.+.. +++.+.|+|||++++.+...
T Consensus 164 ~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 164 VTAGAPKIP---------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp ECSBBSSCC---------HHHHHTEEEEEEEEEEECSS
T ss_pred ECCcHHHHH---------HHHHHhcCCCcEEEEEEecC
Confidence 998873332 36889999999999986543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-16 Score=111.12 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=77.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC-----CCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-----NPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~f 79 (175)
.++++|||||||+|..++.+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++.. +++|
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT-KHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSC-CCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 467899999999999999999864 56899999999997 777777777666444444433322222211 4789
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|++... ......+++++.++|+|||.+++.
T Consensus 138 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 138 DFIFIDAD------KTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEE
Confidence 99998643 334558899999999999988884
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=105.09 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=76.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------------
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------------ 72 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 72 (175)
.++++|||||||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.+
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT-NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 467899999999999999999876 57899999999998 777777766655322333332221111
Q ss_pred --CCCC--CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 73 --PIPN--PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 73 --~~~~--~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+++ ++||+|++.... +....+++++.+.|+|||.+++.
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccCCCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEE
Confidence 1222 789999987443 34448899999999999988885
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=102.97 Aligned_cols=107 Identities=13% Similarity=0.009 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhC--------CCCCCcceeeccCCCCCC--CCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN--------GITPALPHIKHSWGDAFP--IPN 76 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~ 76 (175)
++.+|||||||+|.+++.+++.. ..+|+|+|+|+.++ +.++++...+ +. .++..+..+..+.++ +..
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT-NYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHH-HHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHH-HHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence 57889999999999999999875 35799999999998 6665555443 33 233444444333333 556
Q ss_pred CCccEEEeCCcccCcccch------HHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYS------NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~------~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++|.|+....- -+.... ....+++++.++|+|||.+++.
T Consensus 127 ~~~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 789999864221 000000 0037999999999999999886
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=106.63 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=77.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||+|||+|.+++.+++.. +.+|+++|+|+.++ +.+++|...++.. .+..+..+..+. +. .++||+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av-~~a~~n~~~n~l~-~~~~~~~d~~~~-~~-~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY-HYLCENIKLNKLN-NVIPILADNRDV-EL-KDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHH-HHHHHHHHHTTCS-SEEEEESCGGGC-CC-TTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CEEEEECChHHc-Cc-cCCceEEEE
Confidence 3467899999999999999999874 45899999999998 8888898888772 233333333222 22 568999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.... ....++.++.+.|+|||.+++.
T Consensus 193 d~p~-------~~~~~l~~~~~~LkpgG~l~~s 218 (272)
T 3a27_A 193 GYVH-------KTHKFLDKTFEFLKDRGVIHYH 218 (272)
T ss_dssp CCCS-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCcc-------cHHHHHHHHHHHcCCCCEEEEE
Confidence 7653 2237889999999999988875
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=105.46 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=72.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++.. +.+|+++|+|+.++ +.++++.. .+..+..+. ..+++.+++||+|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~------~~~~~~~d~-~~~~~~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRYP------QVTFCVASS-HRLPFSDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHCT------TSEEEECCT-TSCSBCTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHhCC------CcEEEEcch-hhCCCCCCceeEEEEe
Confidence 367899999999999999998875 67899999999998 55544321 122333222 2345667899999986
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.+. ..++++.++|+|||++++..+..
T Consensus 156 ~~~----------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 156 YAP----------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp SCC----------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred CCh----------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 553 35789999999999999985443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=110.27 Aligned_cols=106 Identities=9% Similarity=0.005 Sum_probs=75.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+|++|||+|||+|.+++.+++. +..|+++|+|+.++ +.+++|...++...+ ....+..+.++...+.||+|++...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al-~~a~~n~~~ng~~~~--~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEAL-GVLDQAALRLGLRVD--IRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHHTCCCE--EEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHH-HHHHHHHHHhCCCCc--EEEccHHHHHHHhcCCCCEEEECCC
Confidence 3899999999999999999887 56699999999998 888889888877321 2222211111111334999998755
Q ss_pred ccCcc------cchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVK------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+... .......+++.+.++|+|||.+++.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~ 325 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLS 325 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32211 1124468889999999999988764
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=109.12 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=92.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|..+..+++.. +.+++++|+ +.++ +.++. . ..+..+..+..+ +.+ .||+|++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~------~-~~v~~~~~d~~~--~~p--~~D~v~~ 252 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-ENLSG------S-NNLTYVGGDMFT--SIP--NADAVLL 252 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCC------B-TTEEEEECCTTT--CCC--CCSEEEE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH-hhccc------C-CCcEEEeccccC--CCC--CccEEEe
Confidence 3456899999999999999998875 568999999 8887 33321 1 123333333322 222 3999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCC---CCceeeccccCCCCCCC--CCCC--CCceEeeeeccCCCcchhHHHHHHHH
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKP---KDSQVGHLTKNEQGEGT--EGLP--WPAFLMSWRRRIGKEDETIFFTSCEN 157 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~p---gG~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (175)
..+++++. .+....+++++.++|+| ||++++........... .... ...+...... ....+.+++.+++++
T Consensus 253 ~~~lh~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-g~~~t~~e~~~ll~~ 330 (352)
T 1fp2_A 253 KYILHNWT-DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN-GKERNEEEWKKLFIE 330 (352)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGT-CCCEEHHHHHHHHHH
T ss_pred ehhhccCC-HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhcc-CCCCCHHHHHHHHHH
Confidence 99996665 34556999999999999 99998874433221110 0000 0000000000 111246899999999
Q ss_pred cCCeeEEec
Q 030558 158 AGLEVKHLG 166 (175)
Q Consensus 158 ~g~~~~~~~ 166 (175)
+||++.++.
T Consensus 331 aGf~~~~~~ 339 (352)
T 1fp2_A 331 AGFQHYKIS 339 (352)
T ss_dssp TTCCEEEEE
T ss_pred CCCCeeEEE
Confidence 999876653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=111.23 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=92.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++.+|||||||+|..+..+++.. ..+++++|+ +.++ +.++. . ..+..+..+..+ +++ .||+|++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-~~a~~------~-~~v~~~~~d~~~--~~~--~~D~v~~ 273 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-ENAPP------L-SGIEHVGGDMFA--SVP--QGDAMIL 273 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-TTCCC------C-TTEEEEECCTTT--CCC--CEEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH-Hhhhh------c-CCCEEEeCCccc--CCC--CCCEEEE
Confidence 3456899999999999999998875 457889999 8776 33221 1 123333333322 222 2999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCC-CCCCc---eEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG-LPWPA---FLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
..+++++. .+....++++++++|+|||++++............. ..... +...........+.+++.++++++||
T Consensus 274 ~~~lh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 352 (372)
T 1fp1_D 274 KAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGF 352 (372)
T ss_dssp ESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred ecccccCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCC
Confidence 99995554 345569999999999999999988433222111000 00000 00000000111246899999999999
Q ss_pred eeEEecc
Q 030558 161 EVKHLGS 167 (175)
Q Consensus 161 ~~~~~~~ 167 (175)
++.++..
T Consensus 353 ~~~~~~~ 359 (372)
T 1fp1_D 353 SKFQVAC 359 (372)
T ss_dssp SEEEEEE
T ss_pred ceEEEEE
Confidence 8776543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=96.76 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=79.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.++..+++....+|+++|+|+.++ +.++++.. .+..+..+.. .. +++||+|+++.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~-~~a~~~~~------~~~~~~~d~~---~~-~~~~D~v~~~~ 118 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCG------GVNFMVADVS---EI-SGKYDTWIMNP 118 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCT------TSEEEECCGG---GC-CCCEEEEEECC
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHhcC------CCEEEECcHH---HC-CCCeeEEEECC
Confidence 36789999999999999999887334699999999998 66666553 1233333322 22 26899999998
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
.+++... .....+++++.+.+ |+ +++... ..+...+.+.++++| .++.+.
T Consensus 119 p~~~~~~-~~~~~~l~~~~~~~--g~-~~~~~~-------------------------~~~~~~~~~~~~~~g-~~~~~~ 168 (200)
T 1ne2_A 119 PFGSVVK-HSDRAFIDKAFETS--MW-IYSIGN-------------------------AKARDFLRREFSARG-DVFREE 168 (200)
T ss_dssp CC--------CHHHHHHHHHHE--EE-EEEEEE-------------------------GGGHHHHHHHHHHHE-EEEEEE
T ss_pred CchhccC-chhHHHHHHHHHhc--Cc-EEEEEc-------------------------CchHHHHHHHHHHCC-CEEEEE
Confidence 8744432 33347889999988 43 333210 011245566677777 777666
Q ss_pred ceEEE
Q 030558 167 SRVYC 171 (175)
Q Consensus 167 ~~~~~ 171 (175)
...+.
T Consensus 169 ~~~~~ 173 (200)
T 1ne2_A 169 KVYIT 173 (200)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 55554
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=101.96 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=73.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCC----CCCcceeeccCCCCCCCCCCCc
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGI----TPALPHIKHSWGDAFPIPNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f 79 (175)
..++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++++....+. ..++..+..+... .....++|
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~f 152 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRM-GYAEEAPY 152 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGG-CCGGGCCE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHhhcccccCCCcEEEEECCccc-CcccCCCc
Confidence 44678999999999999999988754 5899999999998 666666654332 1223333333221 22235689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
|+|++...+. .+++++.++|+|||++++.+..
T Consensus 153 D~i~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 153 DAIHVGAAAP---------VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEECSBBS---------SCCHHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCchH---------HHHHHHHHhcCCCcEEEEEEec
Confidence 9999987762 2236789999999999997544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=117.59 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=83.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|++|||+|||+|.+++.+++....+|+++|+|+.++ +.+++|...++.. .++..+..+..+.++...++||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al-~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYL-EWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 47899999999999999999886455699999999998 8999999998874 344444444332233345789999996
Q ss_pred CcccC--------cccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 86 DILLY--------VKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~--------~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
...+. +........++..+.++|+|||.+++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 54321 1223456788999999999999888753
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-14 Score=110.38 Aligned_cols=111 Identities=12% Similarity=0.036 Sum_probs=80.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-CcceeeccCCCCCCC---CCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPI---PNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~fD~i 82 (175)
.++++|||+|||+|.+++.+++....+|+++|+|+.++ +.+++|...++... ++..+..+..+.++. ...+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al-~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 46789999999999999999986455899999999998 88899999888743 444444333221221 23589999
Q ss_pred EeCCccc------CcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 83 LASDILL------YVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 83 ~~~~~l~------~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
++....+ ..........+++.+.+.|+|||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9865442 11122345567888899999999888863
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=102.99 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=76.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~ 81 (175)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++....+.. .+.+..++... ..+++||+
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l-~~a~~~~~~~g~~----~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGVL----NVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTCC----SEEEESSCGGGGGGGCCCEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHHhCCC----eEEEEECChhhcccccccCCE
Confidence 3467899999999999999998875 36899999999998 7777777766652 23333333222 23568999
Q ss_pred EEeCCc------ccCccc-------------chHHHHHHHHHHhhcCCCCceeeccc
Q 030558 82 ILASDI------LLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 82 i~~~~~------l~~~~~-------------~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
|++... +...++ ......+++++.++|||||++++++.
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 998432 211110 01135899999999999999988643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=103.01 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=94.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
...+|||||||+|-+++.++.. ...+|+++|+++.++ +.++.+...++.. ..+.+.+.. ....+.||++++.
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~l-e~a~~~l~~~g~~-----~~~~v~D~~~~~p~~~~DvaL~l 205 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLV-GFVDEALTRLNVP-----HRTNVADLLEDRLDEPADVTLLL 205 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHH-HHHHHHHHHTTCC-----EEEEECCTTTSCCCSCCSEEEET
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhcCCC-----ceEEEeeecccCCCCCcchHHHH
Confidence 3679999999999999988775 367899999999998 8888898887772 233444433 3456789999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
-++.+.++.. ....+ ++.+.|+|+|.++-. +.+. +..+.+.+.. .| ...|.+.+.+.|..+.++
T Consensus 206 kti~~Le~q~-kg~g~-~ll~aL~~~~vvVSf--p~ks----l~Grs~gm~~----~Y----~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 206 KTLPCLETQQ-RGSGW-EVIDIVNSPNIVVTF--PTKS----LGQRSKGMFQ----NY----SQSFESQARERSCRIQRL 269 (281)
T ss_dssp TCHHHHHHHS-TTHHH-HHHHHSSCSEEEEEE--ECC-----------CHHH----HH----HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHhhhhh-hHHHH-HHHHHhCCCCEEEec--cchh----hcCCCcchhh----HH----HHHHHHHHHhcCCceeee
Confidence 9984443322 22334 899999999855543 1100 0000111010 01 256677788788766655
Q ss_pred ---cceEEEEec
Q 030558 166 ---GSRVYCIKL 174 (175)
Q Consensus 166 ---~~~~~~i~~ 174 (175)
++..|+|.+
T Consensus 270 ~~~nEl~y~i~k 281 (281)
T 3lcv_B 270 EIGNELIYVIQK 281 (281)
T ss_dssp EETTEEEEEEC-
T ss_pred eecCeeEEEecC
Confidence 677777754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=103.61 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=76.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C-----CCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I-----PNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~ 78 (175)
.++++|||||||+|..++.+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++ . ..++
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY-EIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 467899999999999999999875 57899999999998 7888887776663233333322221111 1 2568
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|++... .......++++.+.|+|||.+++.
T Consensus 148 fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 148 YDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 999998633 234558999999999999988774
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=103.64 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=76.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~ 84 (175)
.++++|||+| |+|.+++.+++... .+|+++|+++.++ +.++++...++.. ++..+..+..+.++. .+++||+|++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l-~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLT-KFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 3578999999 99999999988743 6899999999998 8888888776663 344444444332332 3468999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCce
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
+..+ +.. ....+++++.++|+|||++
T Consensus 248 ~~p~-~~~---~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 248 DPPE-TLE---AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCCS-SHH---HHHHHHHHHHHTBCSTTCE
T ss_pred CCCC-chH---HHHHHHHHHHHHcccCCeE
Confidence 8765 333 2469999999999999954
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=103.47 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=80.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
+.++.+|||+|||+|.+++.++... ..+|+|+|+++.++ +.++.|....+.. .+..+..+..+ ++...+.||+|+
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i-~~a~~n~~~~g~~-~i~~~~~D~~~-~~~~~~~~D~Ii 277 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL-GLAREAALASGLS-WIRFLRADARH-LPRFFPEVDRIL 277 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHH-HHHHHHHHHTTCT-TCEEEECCGGG-GGGTCCCCSEEE
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHH-HHHHHHHHHcCCC-ceEEEeCChhh-CccccCCCCEEE
Confidence 4467899999999999999998864 37899999999998 8888888887763 34444433322 233345799999
Q ss_pred eCCcccCcccc------hHHHHHHHHHHhhcCCCCceeeccc
Q 030558 84 ASDILLYVKQY------SNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~------~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++..+ ..... .....+++++.+.|+|||++++.+.
T Consensus 278 ~npPy-g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 278 ANPPH-GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp ECCCS-CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ECCCC-cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 97664 22111 1126889999999999999888643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-14 Score=103.85 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=74.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhC-C-CCCCcceeeccCCCCCCCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTN-G-ITPALPHIKHSWGDAFPIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~fD~ 81 (175)
..++.+|||+|||+|.++..+++.. +.+|+++|+++.++ +.++++.... + ...++..+..+..+ .++.+++||+
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~g~~~~~v~~~~~d~~~-~~~~~~~~D~ 174 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-EHARRNVSGCYGQPPDNWRLVVSDLAD-SELPDGSVDR 174 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHHTSCCTTEEEECSCGGG-CCCCTTCEEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhcCCCCCcEEEEECchHh-cCCCCCceeE
Confidence 4567899999999999999998863 56899999999998 7777776654 3 22233333333222 2345678999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|+++. .+.. .+++++.++|+|||.+++..
T Consensus 175 v~~~~-----~~~~---~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 175 AVLDM-----LAPW---EVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp EEEES-----SCGG---GGHHHHHHHEEEEEEEEEEE
T ss_pred EEECC-----cCHH---HHHHHHHHhCCCCCEEEEEe
Confidence 99832 2222 78999999999999988864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-14 Score=100.96 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=74.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC------CcEEEEeCChHHHHHHHHHHHhhCCC----CCCcceeeccCCCCCC--
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN------LDITTSDYNDQEIEDNIAYNSTTNGI----TPALPHIKHSWGDAFP-- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~------~~v~~~D~s~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-- 73 (175)
..++.+|||+|||+|.++..+++..+ .+|+++|+++.++ +.++++....+. ..++..+..+..+..+
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV-NFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHH-HHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHH-HHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 44678999999999999999988754 4899999999998 677766665441 1223333333222110
Q ss_pred -CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 74 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 74 -~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
...++||+|++...+.+ +++++.+.|+|||++++....
T Consensus 157 ~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEcc
Confidence 23468999999888722 247789999999999987543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-14 Score=95.95 Aligned_cols=120 Identities=8% Similarity=-0.030 Sum_probs=80.5
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---CCCCc
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDW 79 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f 79 (175)
.....+|.+|||+|||. | ++|+|+.|+ +.++++... .+.....+.. .+++ .+++|
T Consensus 7 ~~g~~~g~~vL~~~~g~--------------v-~vD~s~~ml-~~a~~~~~~-----~~~~~~~d~~-~~~~~~~~~~~f 64 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS--------------S-PVEALKGLV-DKLQALTGN-----EGRVSVENIK-QLLQSAHKESSF 64 (176)
T ss_dssp TTTCCTTSEEEEEECTT--------------S-CHHHHHHHH-HHHHHHTTT-----TSEEEEEEGG-GGGGGCCCSSCE
T ss_pred ccCCCCCCEEEEecCCc--------------e-eeeCCHHHH-HHHHHhccc-----CcEEEEechh-cCccccCCCCCE
Confidence 34566899999999996 2 399999998 555544322 1233333332 2333 67899
Q ss_pred cEEEeCCcccCc-ccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHc
Q 030558 80 DLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 80 D~i~~~~~l~~~-~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
|+|+++.++++. .+ ...++++++++|||||++++..+..... .. ..+ ..+..++.+.++++
T Consensus 65 D~V~~~~~l~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~------~~--------~~~-~~~~~~~~~~l~~a 126 (176)
T 2ld4_A 65 DIILSGLVPGSTTLH---SAEILAEIARILRPGGCLFLKEPVETAV------DN--------NSK-VKTASKLCSALTLS 126 (176)
T ss_dssp EEEEECCSTTCCCCC---CHHHHHHHHHHEEEEEEEEEEEEEESSS------CS--------SSS-SCCHHHHHHHHHHT
T ss_pred eEEEECChhhhcccC---HHHHHHHHHHHCCCCEEEEEEccccccc------cc--------ccc-cCCHHHHHHHHHHC
Confidence 999999998665 43 3599999999999999999953321100 00 111 11357899999999
Q ss_pred CCeeE
Q 030558 159 GLEVK 163 (175)
Q Consensus 159 g~~~~ 163 (175)
|| ++
T Consensus 127 Gf-i~ 130 (176)
T 2ld4_A 127 GL-VE 130 (176)
T ss_dssp TC-EE
T ss_pred CC-cE
Confidence 99 55
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-14 Score=102.11 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=76.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C--C--CCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I--P--NPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--~~~f 79 (175)
.++++|||+|||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+.++ . . .++|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 467899999999999999998864 56899999999998 7777777776654344444332211111 1 1 1689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|++... ......+++++.+.|+|||.+++.
T Consensus 147 D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 147 DVAVVDAD------KENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp EEEEECSC------STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 99998644 233458999999999999988874
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=96.45 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=73.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (175)
.++.+|||||||+|.+++.+. .+..|+|+|+++.++ +.++.+...++. ...+.+.|.. ....++||+|++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i-~~ar~~~~~~g~-----~~~~~v~D~~~~~~~~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLG-DVITPFAREKDW-----DFTFALQDVLCAPPAEAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHH-HHHHHHHHHTTC-----EEEEEECCTTTSCCCCBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHH-HHHHHHHHhcCC-----CceEEEeecccCCCCCCcchHHHH
Confidence 357899999999999999886 478999999999998 888888777665 2233343433 2345589999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-++.+.++... ...-++.+.|++++.++-
T Consensus 176 k~lh~LE~q~~--~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 176 KLLPLLEREQA--GSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp SCHHHHHHHST--THHHHHHHHCBCSEEEEE
T ss_pred HHHHHhhhhch--hhHHHHHHHhcCCCEEEE
Confidence 88854444333 344488889999874444
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-14 Score=108.61 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=80.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-CCCcceeeccCCCCCC-C--CCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPHIKHSWGDAFP-I--PNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~--~~~~fD~i 82 (175)
.++++|||+|||+|.+++.+++.+..+|+++|+|+.++ +.+++|...++. ..++..+..+..+.++ . ...+||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al-~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 46789999999999999999987556899999999998 888889888776 3333444333222111 1 14689999
Q ss_pred EeCCcccCc------ccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~------~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++....+.. ........++.++.+.|+|||.+++.
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 338 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 997543111 11245668999999999999988875
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=104.85 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=71.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhh-------CCC---CCCcceeeccCCCCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTT-------NGI---TPALPHIKHSWGDAF 72 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~ 72 (175)
...++.+|||+|||+|.++..+++..+ .+|+++|+++.++ +.++++... ++. ..++..+..+..+..
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 345788999999999999999988743 7899999999998 676666653 222 122333333333222
Q ss_pred -CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 73 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 73 -~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
++.+++||+|++... ... .+++++.++|+|||++++..+.
T Consensus 181 ~~~~~~~fD~V~~~~~-----~~~---~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 181 EDIKSLTFDAVALDML-----NPH---VTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp -------EEEEEECSS-----STT---TTHHHHGGGEEEEEEEEEEESS
T ss_pred cccCCCCeeEEEECCC-----CHH---HHHHHHHHhcCCCcEEEEEeCC
Confidence 344568999998532 122 4789999999999999887443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-14 Score=101.33 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=71.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-------CcEEEEeCChHHHHHHHHHHHhhCCC----CCCcceeeccCCCCCCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-------LDITTSDYNDQEIEDNIAYNSTTNGI----TPALPHIKHSWGDAFPI 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-------~~v~~~D~s~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (175)
..++.+|||+|||+|.++..+++..+ .+|+++|+++.++ +.++++....+. ..++..+..+..+ ++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~ 158 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDSGQLLIVEGDGRK--GY 158 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHHTSEEEEESCGGG--CC
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHH-HHHHHHHHhcCccccCCCceEEEECCccc--CC
Confidence 34678999999999999999988654 4899999999998 666655544220 0122333333222 23
Q ss_pred CC-CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 75 PN-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 75 ~~-~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.+ ++||+|++...+.+. .+++.+.|+|||++++...
T Consensus 159 ~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 159 PPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp GGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred CcCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEe
Confidence 33 689999999887332 2678999999999998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-14 Score=103.13 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=74.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCC--CCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPN--PDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~f 79 (175)
.++++|||+|||+|..+..+++.. +.+|+++|+++.++ +.++++....+...++..+..+..+ .++..+ ++|
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT-AIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 467899999999999999998865 46899999999998 7777776665552223333222211 111222 789
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|++... .++...+++++.++|+|||.+++.
T Consensus 150 D~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 150 DLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99998644 234558999999999999988884
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-14 Score=100.93 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=68.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHh-----CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCC-CC
Q 030558 7 IERRRCIELGSGTGALAIFLRKA-----MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPN-PD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~-----~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~ 78 (175)
.++.+|||||||+|..+..+++. .+.+|+++|+++.++ +.++ . ...++..+..+..+. ++... .+
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l-~~a~-~-----~~~~v~~~~gD~~~~~~l~~~~~~~ 152 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPA-S-----DMENITLHQGDCSDLTTFEHLREMA 152 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCG-G-----GCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHH-HHHh-c-----cCCceEEEECcchhHHHHHhhccCC
Confidence 35689999999999999999886 267899999999987 3332 1 112334444333322 23223 37
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHh-hcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~-~l~pgG~~~~~ 117 (175)
||+|++... + . +...++.++.+ +|+|||++++.
T Consensus 153 fD~I~~d~~--~-~---~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 153 HPLIFIDNA--H-A---NTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp SSEEEEESS--C-S---SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred CCEEEECCc--h-H---hHHHHHHHHHHhhCCCCCEEEEE
Confidence 999997554 2 1 34589999997 99999999885
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-14 Score=106.83 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=90.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||||||+|.++..+++.. +.+++++|+ +.++ +.++. . ..+..+..+..+ +.+ .||+|++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~------~-~~v~~~~~d~~~--~~~--~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV-GNLTG------N-ENLNFVGGDMFK--SIP--SADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH-SSCCC------C-SSEEEEECCTTT--CCC--CCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH-hhccc------C-CCcEEEeCccCC--CCC--CceEEEEc
Confidence 456899999999999999998875 557999999 6676 33221 1 123333333322 222 59999999
Q ss_pred CcccCcccchHHHHHHHHHHhhcCC---CCceeeccccCCCCCCCC-CCCCCc---eEeeeeccCCCcchhHHHHHHHHc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKP---KDSQVGHLTKNEQGEGTE-GLPWPA---FLMSWRRRIGKEDETIFFTSCENA 158 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~p---gG~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 158 (175)
.+++++. .+....+++++.++|+| ||++++............ ...... +...........+..++.++++++
T Consensus 259 ~vlh~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 337 (358)
T 1zg3_A 259 WVLHDWN-DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDA 337 (358)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred ccccCCC-HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHc
Confidence 9995554 34566999999999999 999998744332211100 000000 000000001112468999999999
Q ss_pred CCeeEEe
Q 030558 159 GLEVKHL 165 (175)
Q Consensus 159 g~~~~~~ 165 (175)
||++.++
T Consensus 338 Gf~~~~~ 344 (358)
T 1zg3_A 338 GFSSYKI 344 (358)
T ss_dssp TCCEEEE
T ss_pred CCCeeEE
Confidence 9987665
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=101.69 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=86.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.+++.++.... .+|+|+|+|+.++ +.++.|....+....+.....+.. .++..+++||+|+++
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l-~~A~~n~~~~gl~~~i~~~~~D~~-~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHL-IGAEMNALAAGVLDKIKFIQGDAT-QLSQYVDSVDFAISN 293 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHH-HHHHHHHHHTTCGGGCEEEECCGG-GGGGTCSCEEEEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHHHcCCCCceEEEECChh-hCCcccCCcCEEEEC
Confidence 4678999999999999999988732 2899999999998 888888887776433444433332 234455789999997
Q ss_pred CcccCc----ccchHH-HHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 86 DILLYV----KQYSNL-IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 86 ~~l~~~----~~~~~~-~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
..+... ...+.+ ..+++++.+++ +|.+++.+. +...+.+.+++.||
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------~~~~~~~~~~~~G~ 344 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------EKKAIEEAIAENGF 344 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------CHHHHHHHHHHTTE
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------CHHHHHHHHHHcCC
Confidence 664211 112222 57888888888 444444211 23667778888898
Q ss_pred eeEE
Q 030558 161 EVKH 164 (175)
Q Consensus 161 ~~~~ 164 (175)
++.+
T Consensus 345 ~~~~ 348 (373)
T 3tm4_A 345 EIIH 348 (373)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8655
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.6e-14 Score=102.23 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=77.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC----CCCCcc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-N-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI----PNPDWD 80 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fD 80 (175)
.++.+|||+|||+|..+..+++.. + .+|+++|+++.++ +.++++....+.. ++..+..+..+ .+. ..++||
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~-~~~~~~~~~~~fD 158 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRT-KALKSNINRMGVL-NTIIINADMRK-YKDYLLKNEIFFD 158 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEESCHHH-HHHHHHHTTCCEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHH-HHHHHHHHHhCCC-cEEEEeCChHh-cchhhhhccccCC
Confidence 468899999999999999998854 3 6899999999998 7788888776662 22332222111 111 256899
Q ss_pred EEEeCCcccCcc---------------cchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 81 LILASDILLYVK---------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 81 ~i~~~~~l~~~~---------------~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
+|++........ ....+..+++++.+.|||||++++++...
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 999863321100 01234689999999999999998875443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-14 Score=106.74 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---CCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~i~~ 84 (175)
++++|||+|||+|.+++.+++. +.+|+++|+|+.++ +.+++|...++... +..+..+..+.++. ..++||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~-~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEAL-RRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHH-HHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5789999999999999999988 78899999999998 88888998887732 33333222211111 2468999998
Q ss_pred CCcccCc------ccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 85 SDILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 85 ~~~l~~~------~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
....+.. ........++.++.++|+|||.+++..
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 325 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6543111 111345688999999999999888863
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-14 Score=107.28 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=79.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---CCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~i~~ 84 (175)
++++|||+|||+|.+++.+++....+|+++|+|+.++ +.+++|...++...++..+..+..+..+. ..++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l-~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6889999999999999999887445899999999998 88888988887732333333332221111 2468999999
Q ss_pred CCcccCcc------cchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVK------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
....+... .......++.++.+.|+|||.+++.
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 334 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 334 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 65432111 1144668899999999999988775
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=102.68 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=75.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.+++. ++ .+.+|+++|+|+.++ +.+++|...++...++..+..+. ..+. ++||+|++..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai-~~a~~n~~~n~l~~~v~~~~~D~---~~~~-~~fD~Vi~dp 266 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAI-ELLKKNIKLNKLEHKIIPILSDV---REVD-VKGNRVIMNL 266 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCG---GGCC-CCEEEEEECC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECCh---HHhc-CCCcEEEECC
Confidence 3688999999999999999 88 478899999999998 88999999888744444444333 2222 7899999964
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. +. ..+++.+.+.|+|||.+++.
T Consensus 267 P~-~~------~~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 267 PK-FA------HKFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp TT-TG------GGGHHHHHHHEEEEEEEEEE
T ss_pred cH-hH------HHHHHHHHHHcCCCCEEEEE
Confidence 32 21 17888999999999977774
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-13 Score=97.87 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=71.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++....+.. ..+.+..++.......+||+|+++
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~-~~a~~~~~~~~~~---~~v~~~~~D~~~~~~~~fD~vv~n 100 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLV-AELHKRVQGTPVA---SKLQVLVGDVLKTDLPFFDTCVAN 100 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHH-HHHHHHHTTSTTG---GGEEEEESCTTTSCCCCCSEEEEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHH-HHHHHHHHhcCCC---CceEEEEcceecccchhhcEEEEe
Confidence 346789999999999999999887 77999999999998 7777666543331 233444444443333489999997
Q ss_pred CcccCcccchHHHHHHH--------------HH--HhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLS--------------VL--LKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~--------------~l--~~~l~pgG~~~~~ 117 (175)
-.+ ++.. +.+..++. |+ .++++|||.++..
T Consensus 101 lpy-~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~~ 146 (285)
T 1zq9_A 101 LPY-QISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCR 146 (285)
T ss_dssp CCG-GGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCSH
T ss_pred cCc-ccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccch
Confidence 664 4432 22223332 23 3589999988654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=94.53 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=68.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--------CCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------IPN 76 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 76 (175)
.++.+|||+|||+|.++..+++.. +.+|+++|+++ ++ +. ..+..+..+..+ .+ +.+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~-~~-----------~~~~~~~~d~~~-~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD-PI-----------VGVDFLQGDFRD-ELVMKALLERVGD 86 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC-CC-----------TTEEEEESCTTS-HHHHHHHHHHHTT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc-cc-----------CcEEEEEccccc-chhhhhhhccCCC
Confidence 467899999999999999998874 47899999999 75 21 122333333222 12 345
Q ss_pred CCccEEEeCCcccCcccc--hH------HHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQY--SN------LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~--~~------~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++||+|+++.++++.... +. ...+++++.++|+|||.+++.
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 789999998876433221 11 158999999999999988885
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-14 Score=105.45 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhC--CCCCCcceeeccCCCC---CCCCCCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIKHSWGDA---FPIPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~fD~ 81 (175)
++++|||||||+|..+..+++.. +.+|+++|+|+.++ +.++++.... +. ..+.+.+..++. .+..+++||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l-~~ar~~~~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-EVSKIYFKNISCGY--EDKRVNVFIEDASKFLENVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCTTTSGGG--GSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhhcccc--CCCcEEEEEccHHHHHhhcCCCceE
Confidence 56899999999999999998864 57899999999998 7777665431 11 012233333332 2223568999
Q ss_pred EEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++...- .......+ ..+++++.+.|+|||.+++.
T Consensus 193 Ii~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 193 IIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9985431 11111122 58999999999999988885
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=101.99 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=72.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh--CCCCCCcceeeccCCCCC---CCCCCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDAF---PIPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~fD~ 81 (175)
++++|||||||+|.++..+++.. ..+|+++|+++.++ +.++++... ++. ..+.+.+..++.. +..+++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v-~~ar~~~~~~~~~~--~~~rv~v~~~D~~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKL--DDPRVDVQVDDGFMHIAKSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTT--TSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHH-HHHHHHhHhhcccc--CCCceEEEECcHHHHHhhCCCCeeE
Confidence 57899999999999999998864 46899999999998 677666532 122 1122333333322 223578999
Q ss_pred EEeCCcccCcccchH--HHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~--~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++.... ....... ...+++++.+.|+|||.+++.
T Consensus 152 Ii~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 152 IMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9995432 2111100 138999999999999988885
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=94.21 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=65.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC---CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----------
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN---LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----------- 72 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~---~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 72 (175)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|+... . ..+..+..+..+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~------------~-~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP------------I-PNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC------------C-TTCEEEECCTTTTSSCCC-------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC------------C-CCceEEEccccchhhhhhccccccc
Confidence 4578999999999999999998753 6899999998320 0 11223332222211
Q ss_pred -------------CCCCCCccEEEeCCcccCc----ccch----HHHHHHHHHHhhcCCCCceeec
Q 030558 73 -------------PIPNPDWDLILASDILLYV----KQYS----NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 73 -------------~~~~~~fD~i~~~~~l~~~----~~~~----~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+++||+|++..++.+. .+.. ....+++++.++|+|||.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 0245689999998765321 1111 1134889999999999988874
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-13 Score=99.29 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=67.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeC----ChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDY----NDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~----s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~ 81 (175)
.++.+|||||||+|.++..+++. .+|+++|+ ++.++ +... .... ..+.+.+..+ +....+.++||+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~-~~~~----~~~~--~~~~v~~~~~~D~~~l~~~~fD~ 151 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHE-EPIP----MSTY--GWNLVRLQSGVDVFFIPPERCDT 151 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSC-CCCC----CCST--TGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHH-HHHH----hhhc--CCCCeEEEeccccccCCcCCCCE
Confidence 45789999999999999999886 58999999 55443 1100 0000 0133444444 555555679999
Q ss_pred EEeCCccc--Cc-ccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASDILL--YV-KQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~--~~-~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|++..++. ++ .+......+++++.++|||||.|++.+
T Consensus 152 V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 152 LLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99965541 11 111112258899999999999888864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-13 Score=98.63 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=67.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCc-ceeecc--CCCCCCCCCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PAL-PHIKHS--WGDAFPIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~-~~~~~~--~~~~~~~~~~~fD~i 82 (175)
.++.+|||||||+|.++..+++. .+|+|+|+++ |+ ..++.+ ... ... ..+.+. .++...+++++||+|
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~-~~a~~~----~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V 144 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LG-VGGHEV----PRITESYGWNIVKFKSRVDIHTLPVERTDVI 144 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CC-CSSCCC----CCCCCBTTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hh-hhhhhh----hhhhhccCCCeEEEecccCHhHCCCCCCcEE
Confidence 46789999999999999999886 7899999998 53 211100 010 000 023333 445444556799999
Q ss_pred EeCCcccCcccc--hH--HHHHHHHHHhhcCCCC--ceeecc
Q 030558 83 LASDILLYVKQY--SN--LIKSLSVLLKSYKPKD--SQVGHL 118 (175)
Q Consensus 83 ~~~~~l~~~~~~--~~--~~~~l~~l~~~l~pgG--~~~~~~ 118 (175)
++..+ ++.... +. ...+++++.++|+||| .|++.+
T Consensus 145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 99755 232211 11 1248899999999999 888754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-14 Score=103.12 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=71.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC--CC-----CCCcceeeccCCCCC---CCCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN--GI-----TPALPHIKHSWGDAF---PIPNP 77 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~---~~~~~ 77 (175)
++++|||||||+|..+..+++....+|+++|+++.++ +.++++. .. +. ....+.+.+..++.. +. ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i-~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVI-MVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHH-HHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 5689999999999999999887445899999999998 6666665 21 11 001123333333322 12 56
Q ss_pred CccEEEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~ 117 (175)
+||+|++.... .......+ ..+++++.+.|+|||.+++.
T Consensus 152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 89999985442 22111221 58899999999999988885
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=98.19 Aligned_cols=109 Identities=10% Similarity=0.077 Sum_probs=72.2
Q ss_pred CcEEEeCCCc--cHHHHHHHHh--CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCC--CCCcc
Q 030558 10 RRCIELGSGT--GALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIP--NPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~--~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~fD 80 (175)
.+|||||||+ +.....+++. .+.+|+++|.|+.|+ +.++........ .++..+..+..+.. ..+ .+.||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mL-a~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVL-TLSQGLLASTPE-GRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHH-HTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHH-HHHHHHhccCCC-CcEEEEEecccChhhhhcccccccccC
Confidence 6799999997 4444555443 267899999999998 666555443211 22344444433210 000 23454
Q ss_pred -----EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 81 -----LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 -----~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.|+++.+|+|..+.++...+++++.+.|+|||.|+++...
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 6888999966666554679999999999999999998433
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=102.84 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh--CCC-CCCcceeeccCCCCCCCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NGI-TPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
++++|||||||+|..+..+++.. ..+|+++|+++.++ +.++++... ++. ..++..+..+..+.++..+++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 46899999999999999998864 56899999999998 666666532 111 11223332221111222356899999
Q ss_pred eCCcccC-cccch--HHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLY-VKQYS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~-~~~~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+...- . ..... ....+++++.+.|+|||.+++.
T Consensus 169 ~d~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 169 IDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCC-cccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 84321 1 11111 1158899999999999988886
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=101.18 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=72.4
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCCccEEEe
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPDWDLILA 84 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD~i~~ 84 (175)
.+|||||||+|.++..+++.. +.+|+++|+++.++ +.++++..... .+.+.+..++.. ...+++||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi-~~Ar~~~~~~~----~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELA-RLSREWFDIPR----APRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHH-HHHHHHSCCCC----TTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHH-HHHHHhccccC----CCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 389999999999999998843 67899999999998 77776654321 123344444322 234578999998
Q ss_pred CCcccCcccchHH--HHHHHHHHhhcCCCCceeeccc
Q 030558 85 SDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 85 ~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.... .......+ ..+++++.++|+|||.+++...
T Consensus 166 D~~~-~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 166 DVFA-GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CCST-TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 5322 11111111 4899999999999998888643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=99.06 Aligned_cols=104 Identities=10% Similarity=-0.003 Sum_probs=67.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh-CCCCCCcceeecc--CCCCCCCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKHS--WGDAFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~fD~i~ 83 (175)
.++.+|||||||+|.++..+++. .+|+|+|+++ |+ ..++.+... .... ..+.+. .++...+++++||+|+
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~-~~a~~~~~~~~~~~---~~v~~~~~~~D~~~l~~~~fD~Vv 153 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LG-TSGHEKPRLVETFG---WNLITFKSKVDVTKMEPFQADTVL 153 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CC-CTTSCCCCCCCCTT---GGGEEEECSCCGGGCCCCCCSEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hh-hhhhhchhhhhhcC---CCeEEEeccCcHhhCCCCCcCEEE
Confidence 46789999999999999999886 6899999999 63 221111000 0000 023333 4444444567999999
Q ss_pred eCCcccCcccc----hHHHHHHHHHHhhcCCCC--ceeecc
Q 030558 84 ASDILLYVKQY----SNLIKSLSVLLKSYKPKD--SQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~----~~~~~~l~~l~~~l~pgG--~~~~~~ 118 (175)
+..+ ++.... .....+++++.++|+||| .|++.+
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 9766 332211 111247899999999999 888754
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=103.34 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhC--CCCCCcceeeccCCCCC---CCCCCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIKHSWGDAF---PIPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~fD~ 81 (175)
++++|||||||+|..+..+++.. ..+|+++|+++.++ +.++++.... +. ..+.+.+..++.. +..+++||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~Ar~~~~~~~~~~--~~~rv~~~~~D~~~~l~~~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGF--SHPKLDLFCGDGFEFLKNHKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGG--GCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHhcccc--CCCCEEEEEChHHHHHHhcCCCceE
Confidence 46899999999999999998864 46899999999998 7777665432 11 0123333344322 224578999
Q ss_pred EEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++...- .......+ ..+++++.++|+|||.+++.
T Consensus 185 Ii~d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 185 IITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp EEECCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 9985432 11111112 58999999999999988885
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-13 Score=102.32 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=73.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh--CC-C-CCCcceeeccCCCCCCCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NG-I-TPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
++++|||||||+|..+..+++.. ..+|+++|+++.++ +.++++... .+ . ..++..+..+..+.++..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 56899999999999999998864 56899999999998 666665532 11 1 1122322222211122235789999
Q ss_pred EeCCcccCc---ccchH--HHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYV---KQYSN--LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~---~~~~~--~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.... +. ..... ...+++++.++|+|||.+++.
T Consensus 156 i~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 156 IIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 997554 22 11111 258999999999999988886
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=102.86 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=70.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh--CCCCCCcceeeccCCCC---CCCCCCCcc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDA---FPIPNPDWD 80 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~fD 80 (175)
.++++|||||||+|..+..+++.. ..+|+++|+++.++ +.++++... .+. ..+.+.+..++. ++..+++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~ar~~~~~~~~~~--~~~rv~v~~~Da~~~l~~~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVI-QVSKKFLPGMAIGY--SSSKLTLHVGDGFEFMKQNQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGG--GCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHhHHhhccc--CCCcEEEEECcHHHHHhhCCCCce
Confidence 356899999999999999998864 46899999999998 666666543 111 011233333332 223457899
Q ss_pred EEEeCCcccCcccch--HHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|++.... ...... ....+++++.++|+|||.+++.
T Consensus 171 ~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 171 VIITDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp EEEEECC------------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence 99985432 111111 1247899999999999988875
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-13 Score=100.74 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
++++|||||||+|..+..+++.. ..+|+++|+++.++ +.++++....+.....+.+.+..++.. +..+++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i-~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-EVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 56899999999999999998764 46899999999998 677666543210000122333333322 22357899999
Q ss_pred eCCcccCcccchHH--HHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+.... .......+ ..+++++.++|+|||.+++..
T Consensus 157 ~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 85332 22212222 589999999999999888763
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=101.02 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=77.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i 82 (175)
..++.+|||+|||+|..+..+++..+ .+|+++|+++.++ +.++.+....+.. .+..+..+..+..+ +.+++||+|
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l-~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM-KRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADKV 334 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCEE
Confidence 34678999999999999999988653 6899999999998 7778887776662 23333222222211 334689999
Q ss_pred EeCC------cccCcccc------h-------HHHHHHHHHHhhcCCCCceeecccc
Q 030558 83 LASD------ILLYVKQY------S-------NLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 83 ~~~~------~l~~~~~~------~-------~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
++.. ++...++. . .+..+++++.+.|||||++++++..
T Consensus 335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9632 22111111 0 1257899999999999999886443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=90.89 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=64.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCC----------CcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCC---
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMN----------LDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAF--- 72 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~----------~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 72 (175)
.++.+|||+|||+|.++..+++..+ .+|+++|+|+... . ..+..+ ..+..+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------------~-~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------------L-EGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------------C-TTCEEECSCCTTSHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc------------C-CCCeEEEeccCCCHHHHH
Confidence 4678999999999999999999854 6899999998420 0 111222 22211110
Q ss_pred ----CCCCCCccEEEeCCcccC---c-ccch----HHHHHHHHHHhhcCCCCceeecc
Q 030558 73 ----PIPNPDWDLILASDILLY---V-KQYS----NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 73 ----~~~~~~fD~i~~~~~l~~---~-~~~~----~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.+.+++||+|++..++.. + .+.. ....+++++.++|+|||++++..
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 022458999999654321 1 1111 11488999999999999988853
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=101.97 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=75.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---CCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~i 82 (175)
++.+|||+|||+|..+..+++.. ...|+++|+++.++ +.++++....+. ..+.+..++...+ .+++||.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l-~~~~~n~~r~g~----~nv~~~~~D~~~~~~~~~~~fD~I 191 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRV-KVLHANISRCGI----SNVALTHFDGRVFGAAVPEMFDAI 191 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHH-HHHHHHHHHHTC----CSEEEECCCSTTHHHHSTTCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCC----CcEEEEeCCHHHhhhhccccCCEE
Confidence 68899999999999999999875 36799999999998 778888777665 2233333333221 35689999
Q ss_pred EeCCc------ccCcccc-------------hHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDI------LLYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~------l~~~~~~-------------~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++... +...++. ..+..+++++.++|||||+++++
T Consensus 192 l~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys 245 (479)
T 2frx_A 192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS 245 (479)
T ss_dssp EEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 98322 1111110 12357899999999999999986
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-13 Score=102.21 Aligned_cols=109 Identities=8% Similarity=0.069 Sum_probs=72.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhC--CC-CCCcceeeccCCCCCC-CCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN--GI-TPALPHIKHSWGDAFP-IPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~fD~i 82 (175)
++++|||||||+|..+..+++.. ..+|+++|+|+.++ +.++++.... +. ..++..+..+..+.++ ..+++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l-~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 56899999999999999998864 46899999999998 6666665431 11 1122333322211111 235689999
Q ss_pred EeCCccc-CcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILL-YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~-~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++...-. +....-....+++++.++|+|||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854321 1111101358999999999999998885
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=99.03 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=70.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.++ +.+++|...++.. +..+ .++.......+||+|++..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai-~~A~~n~~~ngl~--v~~~---~~d~~~~~~~~fD~Vv~dP 361 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAI-EMARRNVEINNVD--AEFE---VASDREVSVKGFDTVIVDP 361 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHHTCC--EEEE---ECCTTTCCCTTCSEEEECC
T ss_pred CCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHcCCc--EEEE---ECChHHcCccCCCEEEEcC
Confidence 35789999999999999999886 77999999999998 8888888877762 3333 3333333233899999965
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. . ... ..+++.+. .++|+|.++++
T Consensus 362 Pr-~--g~~--~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 362 PR-A--GLH--PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp CT-T--CSC--HHHHHHHH-HHCCSEEEEEE
T ss_pred Cc-c--chH--HHHHHHHH-hcCCCcEEEEE
Confidence 52 1 111 13555554 48999988886
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-12 Score=94.25 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=69.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++.+|||+|||+|.++..+++. +.+|+|+|+++.++ +.++++....+. +.+.+..++......++||+|+++
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~-~~a~~~~~~~~~----~~v~~~~~D~~~~~~~~~D~Vv~n 113 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMI-SEVKKRCLYEGY----NNLEVYEGDAIKTVFPKFDVCTAN 113 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHH-HHHHHHHHHTTC----CCEEC----CCSSCCCCCSEEEEE
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHHcCC----CceEEEECchhhCCcccCCEEEEc
Confidence 346789999999999999999887 77999999999998 777777655444 234444555444444589999997
Q ss_pred CcccCcccchHHHHHH---------------HHHHhhcCCCCce
Q 030558 86 DILLYVKQYSNLIKSL---------------SVLLKSYKPKDSQ 114 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l---------------~~l~~~l~pgG~~ 114 (175)
... ++. .+.+..++ +...|+++++|..
T Consensus 114 ~py-~~~-~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~ 155 (299)
T 2h1r_A 114 IPY-KIS-SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDS 155 (299)
T ss_dssp CCG-GGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTST
T ss_pred CCc-ccc-cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCc
Confidence 654 544 23333444 3466788887743
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-13 Score=92.86 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-------CC---C
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-------IP---N 76 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~ 76 (175)
.++.+|||+|||+|.++..+++. +.+|+|+|+++... . ..+..+..+..+... +. .
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~------------~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEE------------I-AGVRFIRCDIFKETIFDDIDRALREEGI 89 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCC------------C-TTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccccc------------C-CCeEEEEccccCHHHHHHHHHHhhcccC
Confidence 46889999999999999999887 88999999998421 1 122344333322110 00 1
Q ss_pred CCccEEEeCCcccCc--------ccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYV--------KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~--------~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++||+|++....... ...+....+++.+.++|+|||.|++.
T Consensus 90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k 138 (191)
T 3dou_A 90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK 138 (191)
T ss_dssp SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 489999996432110 01122357888999999999988874
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-13 Score=105.00 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=75.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++..+ ..|+++|+|+.++ +.+++|....+.. +..+..+..+.....+++||+|+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l-~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV-RGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEE
Confidence 34688999999999999999998753 5799999999998 8888888877762 22222221111112357899999
Q ss_pred eCCc------ccCcccc-------------hHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDI------LLYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~------l~~~~~~-------------~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+... +...++. ..+..+++++.++|||||+++++
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys 228 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS 228 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 6322 1111111 12368999999999999999886
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-12 Score=99.42 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=76.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~ 83 (175)
..++.+|||+|||+|..+..+++... .+|+++|+++.++ +.++.+....+.. +..+..+..+..+ +.+++||+|+
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l-~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEE
Confidence 34678999999999999999998753 6899999999998 7777787776652 2333322222111 2346899999
Q ss_pred eCCc------ccCcccc------h-------HHHHHHHHHHhhcCCCCceeeccc
Q 030558 84 ASDI------LLYVKQY------S-------NLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~------l~~~~~~------~-------~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+... +...++. . .+..+++++.+.|||||++++++.
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7322 1111110 1 125889999999999999988743
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=102.38 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=76.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCcc
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD 80 (175)
..++.+|||+|||+|..+..+++.. ...|+++|+++.++ +.+++|....+.. .+.+..++... ..+++||
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl-~~~~~n~~r~g~~----nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRA-KILSENIERWGVS----NAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHTCS----SEEEECCCHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC----ceEEEeCCHHHhhhhccccCC
Confidence 3468899999999999999998864 35799999999998 7888888877762 23333333221 2357899
Q ss_pred EEEeCCcc------cCccc---------c----hHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDIL------LYVKQ---------Y----SNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l------~~~~~---------~----~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|++.... ...++ . ..+..+++++.++|||||+++++
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 233 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYS 233 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99984431 11000 0 12347899999999999999886
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-13 Score=97.99 Aligned_cols=97 Identities=13% Similarity=0.013 Sum_probs=69.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh--CCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+++|||||||+|..+..+++. +.+|+++|+++.++ +.++++... .+. ..+.+.+..++...+. ++||+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i-~~ar~~~~~~~~~~--~~~rv~~~~~D~~~~~-~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKIL-DSFISFFPHFHEVK--NNKNFTHAKQLLDLDI-KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHH-GGGTTTSTTHHHHH--TCTTEEEESSGGGSCC-CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHH-HHHHHHHHhhcccc--CCCeEEEEechHHHHH-hhCCEEEEC
Confidence 4689999999999999999887 57899999999997 555443221 001 0123344444444443 789999986
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. .+.. .+++++.+.|+|||.+++.
T Consensus 147 ~-----~dp~---~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 147 Q-----EPDI---HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp S-----CCCH---HHHHHHHTTEEEEEEEEEE
T ss_pred C-----CChH---HHHHHHHHhcCCCcEEEEE
Confidence 2 2222 5899999999999988885
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=96.51 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=75.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC------CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCcc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN------LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~------~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD 80 (175)
++.+|||+|||+|.++..+++... .+++|+|+++.++ +.++.+....+. . +.+..++.+. ...++||
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~-~~a~~n~~~~g~--~---~~i~~~D~l~~~~~~~fD 203 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQ--K---MTLLHQDGLANLLVDPVD 203 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTC--C---CEEEESCTTSCCCCCCEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHHHHhCCC--C---ceEEECCCCCccccCCcc
Confidence 467899999999999998887652 6799999999998 777777665554 2 2233333332 3356899
Q ss_pred EEEeCCcccCcccch---------------HHHHHHHHHHhhcCCCCceeecc
Q 030558 81 LILASDILLYVKQYS---------------NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~---------------~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|+++..+.++...+ ....+++++.+.|+|||++++.+
T Consensus 204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999998853332111 11268999999999999888874
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=99.37 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCCcEEEeCCC------ccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC----
Q 030558 8 ERRRCIELGSG------TGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP---- 75 (175)
Q Consensus 8 ~~~~vLDlGcG------~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (175)
++.+||||||| +|..++.+++.. +.+|+++|+|+.|. . ...++..+..+.. .+++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-~----------~~~rI~fv~GDa~-dlpf~~~l~ 283 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-V----------DELRIRTIQGDQN-DAEFLDRIA 283 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-G----------CBTTEEEEECCTT-CHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-h----------cCCCcEEEEeccc-ccchhhhhh
Confidence 57899999999 777777777652 67899999999873 1 1112333333222 22233
Q ss_pred --CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 --NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 --~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++||+|++..+. + ..+...++++++++|||||.+++.
T Consensus 284 ~~d~sFDlVisdgsH-~---~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 284 RRYGPFDIVIDDGSH-I---NAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHCCEEEEEECSCC-C---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCccEEEECCcc-c---chhHHHHHHHHHHhcCCCeEEEEE
Confidence 5799999986542 3 346679999999999999998886
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=94.76 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=72.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.++ +.+++|...++.. ++..+..+..+.+ ++.+++||+|+
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al-~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALV-EKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 35689999999999999999887 78999999999998 8888888887762 4445544444332 23456899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.... .. .. .+++.+.+ ++|++.++++
T Consensus 362 ~dPPr-~g--~~---~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 362 LDPAR-AG--AA---GVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp ECCCT-TC--CH---HHHHHHHH-HCCSEEEEEE
T ss_pred ECCCC-cc--HH---HHHHHHHh-cCCCeEEEEE
Confidence 96553 11 12 45555543 6888766664
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-12 Score=98.44 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=73.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhC---------------CCCCCcceeeccCCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN---------------GITPALPHIKHSWGDA 71 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 71 (175)
++.+|||+|||+|..++.++++. +.+|+++|+++.++ +.+++|...+ +.. .+.+..+|.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av-~~a~~N~~~n~~~~~~~~~~~~~~~gl~----~i~v~~~Da 121 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFDGELRESKGRAILKGEK----TIVINHDDA 121 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCCSCCEECSSEEEEESSS----EEEEEESCH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHHHHhcccccccccccccccCCC----ceEEEcCcH
Confidence 67899999999999999999974 56799999999998 8888888887 441 133333332
Q ss_pred C---CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 72 F---PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 72 ~---~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. ....++||+|+.. .. .. . ..++..+.+.++|||.++++.
T Consensus 122 ~~~~~~~~~~fD~I~lD-P~-~~--~---~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 122 NRLMAERHRYFHFIDLD-PF-GS--P---MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHHSTTCEEEEEEC-CS-SC--C---HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCCCEEEeC-CC-CC--H---HHHHHHHHHhcCCCCEEEEEe
Confidence 1 1113579999964 33 21 1 278889999999999888764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-12 Score=97.13 Aligned_cols=103 Identities=12% Similarity=-0.053 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHHHHhhCCCCCC-cceeeccCCCCCC-CCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-N-LDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHSWGDAFP-IPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~fD~i~ 83 (175)
+|.+|||++||+|.+++.++++. + .+|+++|+++.++ +.+++|.+.+++..+ +..+..+..+.+. ...++||+|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av-~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAI-EIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHH-HHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 47899999999999999999863 3 6799999999998 899999999988432 3333322211121 2245799999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+.. |.. . ..++..+.+.++|||.++++.
T Consensus 131 lDP--~g~--~---~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--FGT--P---VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC--SSC--C---HHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC--CcC--H---HHHHHHHHHHhCCCCEEEEEe
Confidence 865 221 1 268888999999999888874
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=89.99 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=77.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC---------------------------------------CcEEEEeCChHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN---------------------------------------LDITTSDYNDQEIED 46 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~l~~ 46 (175)
+.++.+|||.+||+|.+.+.++.... .+|+|+|+|+.++ +
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al-~ 277 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLI-E 277 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH-H
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHH-H
Confidence 44678899999999999998877532 3599999999998 8
Q ss_pred HHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC-cccchHHHHHHHHHHhhcCC--CCceeecccc
Q 030558 47 NIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY-VKQYSNLIKSLSVLLKSYKP--KDSQVGHLTK 120 (175)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~-~~~~~~~~~~l~~l~~~l~p--gG~~~~~~~~ 120 (175)
.++.|....+....+..+..+..+. +. ..+||+|+++..+.. ....+++..+.+++.+.+++ ||.+++.+..
T Consensus 278 ~Ar~Na~~~gl~~~I~~~~~D~~~~-~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 278 IAKQNAVEAGLGDLITFRQLQVADF-QT-EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp HHHHHHHHTTCTTCSEEEECCGGGC-CC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred HHHHHHHHcCCCCceEEEECChHhC-CC-CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 8888988888754444444444322 22 358999999966411 12223455566666666655 8888877543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-11 Score=90.30 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=76.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC---------------------------------------CcEEEEeCChHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN---------------------------------------LDITTSDYNDQEIED 46 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~l~~ 46 (175)
+.++.+|||++||+|.+++.++.... .+|+|+|+++.++ +
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai-~ 271 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESI-D 271 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHH-H
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHH-H
Confidence 44678999999999999999877531 4699999999998 8
Q ss_pred HHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC-cccchHHHHHHHHHHhhcCC--CCceeeccc
Q 030558 47 NIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY-VKQYSNLIKSLSVLLKSYKP--KDSQVGHLT 119 (175)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~-~~~~~~~~~~l~~l~~~l~p--gG~~~~~~~ 119 (175)
.++.|...++....+.....+..+. + .+.+||+|+++..+.. ....+++..+.+++.+.+++ |+.+++.+.
T Consensus 272 ~Ar~Na~~~gl~~~i~~~~~D~~~l-~-~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 272 IARENAEIAGVDEYIEFNVGDATQF-K-SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHHTCGGGEEEEECCGGGC-C-CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHHHcCCCCceEEEECChhhc-C-cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 8888888877633333333333222 2 2358999999877521 12234556677777777776 777777644
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.5e-11 Score=85.05 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=65.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCC-CCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPN-PDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~fD~i 82 (175)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.++ +.++++... . ..+.+..++. .++.+ ..| .|
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~-~~a~~~~~~--~----~~v~~~~~D~~~~~~~~~~~~-~v 98 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLC-KTTENKLVD--H----DNFQVLNKDILQFKFPKNQSY-KI 98 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHTTT--C----CSEEEECCCGGGCCCCSSCCC-EE
T ss_pred CCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHH-HHHHHhhcc--C----CCeEEEEChHHhCCcccCCCe-EE
Confidence 446789999999999999999988 68999999999998 666665542 1 1233333332 23332 345 45
Q ss_pred EeCCcccCcccchHHHHHH--------------HHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSL--------------SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l--------------~~l~~~l~pgG~~~~~ 117 (175)
+++-. |++. .+-+..++ +.+.|+++|+|.+.+.
T Consensus 99 v~nlP-y~~~-~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 145 (244)
T 1qam_A 99 FGNIP-YNIS-TDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALF 145 (244)
T ss_dssp EEECC-GGGH-HHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHHH
T ss_pred EEeCC-cccC-HHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhHH
Confidence 55544 3432 22222333 3478899999977766
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=87.37 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=79.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC---------------------------------------CcEEEEeCChHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN---------------------------------------LDITTSDYNDQEIED 46 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~l~~ 46 (175)
+.++..+||.+||+|.+.+.++.... .+|+|+|+++.++ +
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al-~ 270 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV-E 270 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH-H
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH-H
Confidence 44678999999999999998876522 3499999999998 8
Q ss_pred HHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcccC-cccchHHHHHHHHHHhhcCC--CCceeecccc
Q 030558 47 NIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY-VKQYSNLIKSLSVLLKSYKP--KDSQVGHLTK 120 (175)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~-~~~~~~~~~~l~~l~~~l~p--gG~~~~~~~~ 120 (175)
.++.|....+....+..+..+..+. +. ..+||+|+++..+.. ..+.+++..+.+++.+.+|+ |+.+++.+..
T Consensus 271 ~Ar~Na~~~gl~~~I~~~~~D~~~l-~~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 271 IARKNAREVGLEDVVKLKQMRLQDF-KT-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHHHHHTTCTTTEEEEECCGGGC-CC-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHHHHHcCCCCceEEEECChHHC-Cc-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 8888998888754444444443322 22 348999999876421 12234566777777777776 8888887553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-11 Score=93.91 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=75.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--------------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM--------------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 73 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--------------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (175)
++.+|||.|||+|.+...+++.. ..+++|+|+++.++ +.++.+....+.... ...+..++.+.
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~-~lA~~nl~l~g~~~~--~~~i~~gD~l~ 247 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-TLASMNLYLHGIGTD--RSPIVCEDSLE 247 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-HHHHHHHHHTTCCSS--CCSEEECCTTT
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHH-HHHHHHHHHhCCCcC--CCCEeeCCCCC
Confidence 56799999999999998887642 46799999999997 777777776665210 12233344443
Q ss_pred C-CCCCccEEEeCCcccCcccc--------------hHHHHHHHHHHhhcCCCCceeecc
Q 030558 74 I-PNPDWDLILASDILLYVKQY--------------SNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 74 ~-~~~~fD~i~~~~~l~~~~~~--------------~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. ...+||+|+++..+...... .....+++++.+.|+|||++++++
T Consensus 248 ~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 248 KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 2 23489999998775322111 012478999999999999988774
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-11 Score=86.93 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=61.1
Q ss_pred cccCCCcEEEeCC------CccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcce-eeccCCCCCCCC
Q 030558 5 EWIERRRCIELGS------GTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPH-IKHSWGDAFPIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc------G~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 75 (175)
...++.+|||||| |+|. ..+++.. +.+|+|+|+++. + ..+.. +..++.+ .++
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v--------------~~v~~~i~gD~~~-~~~- 120 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V--------------SDADSTLIGDCAT-VHT- 120 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B--------------CSSSEEEESCGGG-CCC-
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C--------------CCCEEEEECcccc-CCc-
Confidence 3456889999999 5577 4445544 368999999996 1 12234 4444322 222
Q ss_pred CCCccEEEeCCccc--------CcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILL--------YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~--------~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++||+|+++.... +.........+++++.++|||||+|++.
T Consensus 121 ~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 121 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 36899999863320 0011223458999999999999998884
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=89.96 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=55.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCCh-------HHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCC--C
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYND-------QEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPN--P 77 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~ 77 (175)
++.+|||+|||+|..++.+++. +.+|+++|+|+ .++ +.++++...++...++..+..+..+.++ +.+ +
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l-~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGI-RRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHH-HHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHH-HHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 5689999999999999999987 78999999999 887 6666666554442223333333222222 223 6
Q ss_pred CccEEEeCCcc
Q 030558 78 DWDLILASDIL 88 (175)
Q Consensus 78 ~fD~i~~~~~l 88 (175)
+||+|++..++
T Consensus 161 ~fD~V~~dP~~ 171 (258)
T 2r6z_A 161 KPDIVYLDPMY 171 (258)
T ss_dssp CCSEEEECCCC
T ss_pred CccEEEECCCC
Confidence 89999997665
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-11 Score=92.97 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=66.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CC------------
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IP------------ 75 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------ 75 (175)
+++|||+|||+|.+++.+++. +.+|+++|+|+.++ +.+++|...++. .++..+..+..+..+ ..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai-~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSV-AAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHH-HHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccccccccc
Confidence 678999999999999999875 67899999999998 888889888877 233333322211111 11
Q ss_pred --CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 --NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 --~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.+||+|++...- . .+..++.+.++++|++++.
T Consensus 291 ~~~~~fD~Vv~dPPr-~--------g~~~~~~~~l~~~g~ivyv 325 (369)
T 3bt7_A 291 LKSYQCETIFVDPPR-S--------GLDSETEKMVQAYPRILYI 325 (369)
T ss_dssp GGGCCEEEEEECCCT-T--------CCCHHHHHHHTTSSEEEEE
T ss_pred cccCCCCEEEECcCc-c--------ccHHHHHHHHhCCCEEEEE
Confidence 1379999875432 1 2234566666788876664
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-11 Score=93.19 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEe
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILA 84 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~ 84 (175)
++.+|||+|||+|.++..+++.. +.+++|+|+++.++ +.+ ..+..+ .++.... ..++||+|++
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~-~~a----------~~~~~~---~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLP----------PWAEGI---LADFLLWEPGEAFDLILG 104 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCC----------TTEEEE---ESCGGGCCCSSCEEEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH-HhC----------CCCcEE---eCChhhcCccCCCCEEEE
Confidence 46799999999999999998863 57899999999886 322 112222 2232222 2468999999
Q ss_pred CCcccCccc-------c-hH------------------HHHHHHHHHhhcCCCCceeeccc
Q 030558 85 SDILLYVKQ-------Y-SN------------------LIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 85 ~~~l~~~~~-------~-~~------------------~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+..+..... . +. ...+++.+.+.|+|||++++.++
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 866532221 0 11 12568899999999999888643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-12 Score=90.72 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=68.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CC-CCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IP-NPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~fD~i 82 (175)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.++ +.++++... ...+.+..+|... +. +++| .|
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~-~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~f-~v 97 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-NLSSEKLKL------NTRVTLIHQDILQFQFPNKQRY-KI 97 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSS-SSSSCTTTT------CSEEEECCSCCTTTTCCCSSEE-EE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHhcc------CCceEEEECChhhcCcccCCCc-EE
Confidence 346789999999999999999888 68999999999987 554443321 1234444444332 33 2578 67
Q ss_pred EeCCcccCcccchHHHHH----------H----HHHHhhcCCCCceeeccc
Q 030558 83 LASDILLYVKQYSNLIKS----------L----SVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~----------l----~~l~~~l~pgG~~~~~~~ 119 (175)
+++-.. +... +.+..+ + +.+.++|+|||.+++...
T Consensus 98 v~n~Py-~~~~-~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 98 VGNIPY-HLST-QIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp EEECCS-SSCH-HHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred EEeCCc-cccH-HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 766443 3321 222222 2 668999999999888743
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-10 Score=82.55 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=55.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~i~ 83 (175)
..++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++... . ..+.+..+|.. ++++.+||.|+
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li-~~a~~~~~~--~----~~v~vi~gD~l~~~~~~~~fD~Iv 119 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLE-PYANKLKEL--Y----NNIEIIWGDALKVDLNKLDFNKVV 119 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGH-HHHHHHHHH--C----SSEEEEESCTTTSCGGGSCCSEEE
T ss_pred CCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHH-HHHHHHhcc--C----CCeEEEECchhhCCcccCCccEEE
Confidence 446789999999999999999988 78999999999998 676666542 1 22334444433 34445799999
Q ss_pred eCCcc
Q 030558 84 ASDIL 88 (175)
Q Consensus 84 ~~~~l 88 (175)
++-.+
T Consensus 120 ~NlPy 124 (295)
T 3gru_A 120 ANLPY 124 (295)
T ss_dssp EECCG
T ss_pred EeCcc
Confidence 88664
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.05 E-value=9.5e-10 Score=82.12 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=70.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--CCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~ 81 (175)
..+|.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++++....+. .++..+..+..+..+.. .++||.
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l-~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCCCE
Confidence 3468899999999999999998864 36899999999998 788888887776 22333333322221111 147999
Q ss_pred EEeCC------cccCccc-----------ch----HHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASD------ILLYVKQ-----------YS----NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~------~l~~~~~-----------~~----~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|++.. ++...++ .. .+.++++.+.+.++ ||++++++
T Consensus 178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT 234 (309)
T 2b9e_A 178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST 234 (309)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence 99732 1211111 11 12356777777776 89888763
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-11 Score=90.52 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=55.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC--CCCCCcceeeccCCCCCCC-CCCCccEEEeC
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIKHSWGDAFPI-PNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (175)
|.+|||+|||+|..++.+++. +.+|+++|+|+.++ +.++.|...+ +. .++..+..+..+.++. .+++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l-~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETA-VAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHH-HHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHH-HHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 899999999999999999876 78999999999998 8888888765 54 2333333333222121 23589999985
Q ss_pred Cc
Q 030558 86 DI 87 (175)
Q Consensus 86 ~~ 87 (175)
..
T Consensus 171 PP 172 (410)
T 3ll7_A 171 PA 172 (410)
T ss_dssp CE
T ss_pred CC
Confidence 44
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=87.40 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=77.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-------------------------------------------CCcEEEEeCChH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-------------------------------------------NLDITTSDYNDQ 42 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-------------------------------------------~~~v~~~D~s~~ 42 (175)
+.++.+|||.+||+|.+.+.++... ...|+|+|+++.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 3467889999999999998877642 147999999999
Q ss_pred HHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeCCcccC-cc---cchHHHHHHHHHHhhcCCCCceeec
Q 030558 43 EIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDILLY-VK---QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~-~~---~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++ +.++.|....+....+.....+..+.. +...++||+|+++..+-. .. ....+-+.+.+.++.+.|||++++.
T Consensus 268 av-~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 268 VI-QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HH-HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HH-HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 98 888899998887433344433333222 222348999999977421 11 1233444555666666799999988
Q ss_pred ccc
Q 030558 118 LTK 120 (175)
Q Consensus 118 ~~~ 120 (175)
+..
T Consensus 347 t~~ 349 (703)
T 3v97_A 347 SAS 349 (703)
T ss_dssp ESC
T ss_pred eCC
Confidence 443
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=79.65 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=53.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCC-CCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPN-PDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~fD~i 82 (175)
..++ +|||||||+|.++..+++. +.+|+++|+++.++ +.++++... . .+.+..+|... +.+ ..+|.|
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~-~~l~~~~~~----~---~v~vi~~D~l~~~~~~~~~~~~i 114 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLR-PVLEETLSG----L---PVRLVFQDALLYPWEEVPQGSLL 114 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGH-HHHHHHTTT----S---SEEEEESCGGGSCGGGSCTTEEE
T ss_pred CCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHH-HHHHHhcCC----C---CEEEEECChhhCChhhccCccEE
Confidence 3456 9999999999999999887 68999999999998 677666542 1 23333344332 222 268998
Q ss_pred EeCCcccCcc
Q 030558 83 LASDILLYVK 92 (175)
Q Consensus 83 ~~~~~l~~~~ 92 (175)
+++-.+ +..
T Consensus 115 v~NlPy-~is 123 (271)
T 3fut_A 115 VANLPY-HIA 123 (271)
T ss_dssp EEEECS-SCC
T ss_pred EecCcc-ccc
Confidence 887664 443
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=86.87 Aligned_cols=110 Identities=9% Similarity=0.041 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-------------------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCc-ceeecc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-------------------NLDITTSDYNDQEIEDNIAYNSTTNGITPAL-PHIKHS 67 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-------------------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 67 (175)
++.+|||.+||+|.+...+++.. ..+++|+|+++.++ +.++.+....+..... ....+.
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~-~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR-RLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH-HHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH-HHHHHHHHHhCCCccccccCCeE
Confidence 56799999999999998876643 23799999999997 7777777766652100 002233
Q ss_pred CCCCCC---CCCCCccEEEeCCcccCccc-----------chHHHHHHHHHHhhcCCCCceeecc
Q 030558 68 WGDAFP---IPNPDWDLILASDILLYVKQ-----------YSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 68 ~~~~~~---~~~~~fD~i~~~~~l~~~~~-----------~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
.++.+. ...++||+|+++..+..... ...-..+++++.+.|+|||++++++
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 444443 23468999999876522111 1112378999999999999988873
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.9e-09 Score=79.55 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCccHHHHHHHH--------h--------CCCcEEEEeCChHHHHHHHHHHHhhC-C----------CCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRK--------A--------MNLDITTSDYNDQEIEDNIAYNSTTN-G----------ITPA 60 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~--------~--------~~~~v~~~D~s~~~l~~~~~~~~~~~-~----------~~~~ 60 (175)
++-+|+|+|||+|.+++.+.. . ...+|...|...++.....+ .+... . ....
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~-~L~~~~~~~~~~~~~~~~~~~ 130 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQ-LLPPLVSNTCMEECLAADGNR 130 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHH-HSCCBCCCC--CCC---CCCB
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHh-hhhhhhhhcchhhhccccCCC
Confidence 357899999999999977622 1 12468999998877422222 21110 0 0000
Q ss_pred cceeeccCCC--CCCCCCCCccEEEeCCcccCcccch-----------------------------------HHHHHHHH
Q 030558 61 LPHIKHSWGD--AFPIPNPDWDLILASDILLYVKQYS-----------------------------------NLIKSLSV 103 (175)
Q Consensus 61 ~~~~~~~~~~--~~~~~~~~fD~i~~~~~l~~~~~~~-----------------------------------~~~~~l~~ 103 (175)
...+....+. ...+++++||+|+++.++++....+ ++..+|+.
T Consensus 131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0112112222 2236788999999999994433222 56677899
Q ss_pred HHhhcCCCCceeeccccC
Q 030558 104 LLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 104 l~~~l~pgG~~~~~~~~~ 121 (175)
.++.|+|||+++++....
T Consensus 211 ra~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHHHEEEEEEEEEEEEEC
T ss_pred HHHHhCCCCEEEEEEecC
Confidence 999999999999995544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.9e-09 Score=85.41 Aligned_cols=110 Identities=9% Similarity=0.014 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC----CcEEEEeCChHHHHHHH--HHHHhhCCCCCCcceeeccCCCCC---CCCCCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN----LDITTSDYNDQEIEDNI--AYNSTTNGITPALPHIKHSWGDAF---PIPNPD 78 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~----~~v~~~D~s~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 78 (175)
++.+|||.|||+|.+...+++..+ .+++|+|+++.++ +.+ +.+...+.....+....+...+.. ....+.
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al-~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFL-ELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGH-HHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHH-HHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 578999999999999999988653 4699999999987 555 444444333111222122222222 123468
Q ss_pred ccEEEeCCcccCcccch--------------------------HHHHHHHHHHhhcCCCCceeecc
Q 030558 79 WDLILASDILLYVKQYS--------------------------NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~--------------------------~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
||+|+++..+......+ ....+++.+.+.|+|||++++.+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999988752111000 12346788999999999998883
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=78.40 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=40.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT 54 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~ 54 (175)
..++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++...
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~-~~~~~~~~~ 73 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLV-AFLQKKYNQ 73 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHH-HHHHHHHTT
T ss_pred CCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHhh
Confidence 446789999999999999999887 68999999999998 677666543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-10 Score=82.66 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=50.2
Q ss_pred cCC--CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh---CCCCCC-c-ceeeccCCC---CCCCCC
Q 030558 7 IER--RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT---NGITPA-L-PHIKHSWGD---AFPIPN 76 (175)
Q Consensus 7 ~~~--~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~---~~~~~~-~-~~~~~~~~~---~~~~~~ 76 (175)
.++ .+|||+|||+|..++.+++. +.+|+++|+++.+. +.++.+... +..... + ..+.+..++ .++...
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~-~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHH-HHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence 345 89999999999999999998 67899999999764 333333221 100000 1 123333333 223223
Q ss_pred CCccEEEeCCcc
Q 030558 77 PDWDLILASDIL 88 (175)
Q Consensus 77 ~~fD~i~~~~~l 88 (175)
.+||+|++..++
T Consensus 163 ~~fDvV~lDP~y 174 (258)
T 2oyr_A 163 PRPQVVYLDPMF 174 (258)
T ss_dssp SCCSEEEECCCC
T ss_pred ccCCEEEEcCCC
Confidence 479999998775
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-09 Score=83.43 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=73.3
Q ss_pred CcEEEeCCCccHHHHHHHHhC----------------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC
Q 030558 10 RRCIELGSGTGALAIFLRKAM----------------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 73 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~----------------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (175)
.+|||.+||+|.+.+.+++.. ..+++|+|+++.++ ..++.|....+.... +.+..++.+.
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~-~lA~~Nl~l~gi~~~---i~i~~gDtL~ 321 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW-KLAAMNMVIRGIDFN---FGKKNADSFL 321 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH-HHHHHHHHHTTCCCB---CCSSSCCTTT
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH-HHHHHHHHHhCCCcc---cceeccchhc
Confidence 389999999999987765432 34699999999997 777878877776322 2234444432
Q ss_pred ---CCCCCccEEEeCCcccC--ccc--------------------c----hHHHHHHHHHHhhcCCCCceeecc
Q 030558 74 ---IPNPDWDLILASDILLY--VKQ--------------------Y----SNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 74 ---~~~~~fD~i~~~~~l~~--~~~--------------------~----~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
....+||+|+++..+-. +.. . ..-..+++.+.+.|+|||++++++
T Consensus 322 ~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 322 DDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp SCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 34568999999877532 100 0 011268899999999999988874
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=80.58 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=54.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-C---CCCCccE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-I---PNPDWDL 81 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~fD~ 81 (175)
.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.++ +.++++...++ .++..+..+..+... . ..++||.
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al-~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D~ 101 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDG 101 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCCE
Confidence 467899999999999999999876 57899999999998 77777766544 234444433322110 0 1157999
Q ss_pred EEeCC
Q 030558 82 ILASD 86 (175)
Q Consensus 82 i~~~~ 86 (175)
|++..
T Consensus 102 Vl~D~ 106 (301)
T 1m6y_A 102 ILMDL 106 (301)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 98754
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.1e-09 Score=83.21 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCccHHH---HHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALA---IFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~---~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
+++.|||+|||+|.++ +.+++..+. +|+|+|.|+.+ ..+.+....++...++..+..+..+. . .++++|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A--~~a~~~v~~N~~~dkVtVI~gd~eev-~-LPEKVDII 432 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA--VVTLENWQFEEWGSQVTVVSSDMREW-V-APEKADII 432 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH--HHHHHHHHHHTTGGGEEEEESCTTTC-C-CSSCEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH--HHHHHHHHhccCCCeEEEEeCcceec-c-CCcccCEE
Confidence 4467999999999995 444444444 58999999854 45555667777766666665555332 2 23689999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCce
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
++-.+=+ ....+.+..++...-|.|||||.+
T Consensus 433 VSEwMG~-fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 433 VSELLGS-FADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp ECCCCBT-TBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred EEEcCcc-cccccCCHHHHHHHHHhcCCCcEE
Confidence 9965542 333455667888888999999854
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=79.52 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=75.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNP 77 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 77 (175)
.++.+|+|.+||+|.+...+++.. ..+++|+|+++.++ ..++.|....+.. .....+..++.+. ....
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~-~lA~~Nl~l~gi~--~~~~~I~~gDtL~~d~p~~~~~ 296 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTY-NLARMNMILHGVP--IENQFLHNADTLDEDWPTQEPT 296 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHH-HHHHHHHHHTTCC--GGGEEEEESCTTTSCSCCSSCC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHH-HHHHHHHHHcCCC--cCccceEecceecccccccccc
Confidence 357899999999999998887764 45799999999987 7777777776662 1223333444332 2356
Q ss_pred CccEEEeCCcccCccc----------------c---h-HHHHHHHHHHhhcC-CCCceeecc
Q 030558 78 DWDLILASDILLYVKQ----------------Y---S-NLIKSLSVLLKSYK-PKDSQVGHL 118 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~----------------~---~-~~~~~l~~l~~~l~-pgG~~~~~~ 118 (175)
.||+|+++..+..... . . .-..+++.+.+.|+ |||++.+++
T Consensus 297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 8999999866421000 0 0 01248999999999 999988873
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.5e-09 Score=74.75 Aligned_cols=128 Identities=11% Similarity=0.074 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-------------CCcEEEEeCCh---HHHHH----------HHHHHHhhCC-----
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-------------NLDITTSDYND---QEIED----------NIAYNSTTNG----- 56 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-------------~~~v~~~D~s~---~~l~~----------~~~~~~~~~~----- 56 (175)
++.+|||+|+|+|..++.+++.. ..+|+++|..| +++.+ .++.......
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 34689999999999998865532 14799999877 44322 2333333210
Q ss_pred -----CCCCcceeeccCCCC---CCCCC----CCccEEEeCCcccCcccchH--HHHHHHHHHhhcCCCCceeeccccCC
Q 030558 57 -----ITPALPHIKHSWGDA---FPIPN----PDWDLILASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 57 -----~~~~~~~~~~~~~~~---~~~~~----~~fD~i~~~~~l~~~~~~~~--~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
.......+.+..+|. ++..+ ..||+|+.- .+ .....++ -..+++.+.++|+|||+++.. ..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD-~f-sp~~~p~lw~~~~l~~l~~~L~pGG~l~ty--sa- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLD-GF-APAKNPDMWTQNLFNAMARLARPGGTLATF--TS- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEEC-SS-CTTTCGGGCCHHHHHHHHHHEEEEEEEEES--CC-
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEEC-CC-CcccChhhcCHHHHHHHHHHcCCCcEEEEE--eC-
Confidence 000112233333442 22222 279999983 22 1111222 137999999999999976641 10
Q ss_pred CCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 123 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
...+.+.+.++||+++.+
T Consensus 215 -------------------------a~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 215 -------------------------AGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp -------------------------BHHHHHHHHHHTEEEEEE
T ss_pred -------------------------CHHHHHHHHHCCCEEEeC
Confidence 156778899999998875
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=73.44 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=64.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~i~ 83 (175)
..++.+|||||||+|.++.++++.. ...|+++|++..+..+. ..........+.+.- .+...+..+.||+|+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~p------i~~~~~g~~ii~~~~~~dv~~l~~~~~DlVl 145 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKP------MNVQSLGWNIITFKDKTDIHRLEPVKCDTLL 145 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCC------CCCCBTTGGGEEEECSCCTTTSCCCCCSEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccc------cccCcCCCCeEEEeccceehhcCCCCccEEE
Confidence 3457789999999999999987753 34688898875431000 000000001111111 133455667899999
Q ss_pred eCCcccC----cccchHHHHHHHHHHhhcCCC-Cceeecccc
Q 030558 84 ASDILLY----VKQYSNLIKSLSVLLKSYKPK-DSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~----~~~~~~~~~~l~~l~~~l~pg-G~~~~~~~~ 120 (175)
+.-+. + +.+......+++.+.++|+|| |.|++-+..
T Consensus 146 sD~ap-nsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 146 CDIGE-SSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp ECCCC-CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ecCcc-CcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 96544 3 112222224578889999999 988887544
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=74.21 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=37.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~ 51 (175)
..++.+|||+|||+|.++..+++..+.+|+++|+++.++ +.++.+
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~-~~~~~~ 73 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMV-ENLKSI 73 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHH-HHHTTS
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHH-HHHHhc
Confidence 346789999999999999999887447899999999998 665544
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=66.57 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC--CCCcceeeccCCCC--------------
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHSWGDA-------------- 71 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------- 71 (175)
+.++|||+||| ..++.+|+..+.+|+.+|.+++.. +.++.+....+. ..++..+..+.++.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~-~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWA-RMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHH-HHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46889999985 566777764368999999999886 777888888775 33343333322111
Q ss_pred CC--------C-CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 72 FP--------I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 72 ~~--------~-~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++ . ..++||+|+.-.-. . ...+..+.+.|+|||++++-
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k------~--~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF------R--VGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS------H--HHHHHHHHHHCSSCEEEEET
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC------c--hhHHHHHHHhcCCCeEEEEe
Confidence 11 1 23689999985432 1 25566677999999988664
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-08 Score=81.74 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCcEEEeCCCccHHHHH---HHHh-----------CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC
Q 030558 9 RRRCIELGSGTGALAIF---LRKA-----------MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 74 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~---l~~~-----------~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (175)
++.|||+|||+|.++.. +++. ...+|+|+|.|+..+ ..+++... ++....+..+..+..+. ..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~-~~l~~~~~-Ng~~d~VtVI~gd~eev-~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI-VTLKYMNV-RTWKRRVTIIESDMRSL-PG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH-HHHHHHHH-HTTTTCSEEEESCGGGH-HH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH-HHHHHHHh-cCCCCeEEEEeCchhhc-cc
Confidence 45799999999999743 3221 123899999999765 44444333 66655566665444322 12
Q ss_pred -----CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCce
Q 030558 75 -----PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 114 (175)
Q Consensus 75 -----~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~ 114 (175)
..++.|+|++-.+= +....+-+...+..+.+.|||||.+
T Consensus 487 p~~~~~~ekVDIIVSElmG-sfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELLG-SFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp HHHHTTCCCCSEEEECCCB-TTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred ccccCCCCcccEEEEeccc-cccchhccHHHHHHHHHhCCCCcEE
Confidence 14689999997664 2333444456777777999999943
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-08 Score=65.12 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCCcEEEeCCCcc-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCC---CCccEEE
Q 030558 8 ERRRCIELGSGTG-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN---PDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~fD~i~ 83 (175)
.+.+|||||||+| ..+..|++..+.+|+++|+++..+ + .+. .|.+.... ..||+|.
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av-~----------------~v~---dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG-G----------------IVR---DDITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST-T----------------EEC---CCSSSCCHHHHTTEEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc-c----------------eEE---ccCCCCcccccCCcCEEE
Confidence 4679999999999 799999875699999999999776 2 111 12222222 3799997
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.. +++++..+-++.+.+. .-+++.
T Consensus 95 sirP------P~El~~~i~~lA~~v~--adliI~ 120 (153)
T 2k4m_A 95 SIRP------PAEIHSSLMRVADAVG--ARLIIK 120 (153)
T ss_dssp EESC------CTTTHHHHHHHHHHHT--CEEEEE
T ss_pred EcCC------CHHHHHHHHHHHHHcC--CCEEEE
Confidence 7433 3456677777777555 445554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.7e-08 Score=73.91 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=86.5
Q ss_pred CCcEEEeCCCccHHHHHHHHh-------------C-----CCcEEEEeCChHHH---HHHHH---HH-HhhCCCCCCcce
Q 030558 9 RRRCIELGSGTGALAIFLRKA-------------M-----NLDITTSDYNDQEI---EDNIA---YN-STTNGITPALPH 63 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~-------------~-----~~~v~~~D~s~~~l---~~~~~---~~-~~~~~~~~~~~~ 63 (175)
.-+|+|+||++|..++.+... . ..+|+..|...+.. -..+. .. ....+......+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 467999999999999876665 1 23588999874321 11111 11 111111011123
Q ss_pred eeccCCCC--CCCCCCCccEEEeCCcccCccc-ch------------------------------------HHHHHHHHH
Q 030558 64 IKHSWGDA--FPIPNPDWDLILASDILLYVKQ-YS------------------------------------NLIKSLSVL 104 (175)
Q Consensus 64 ~~~~~~~~--~~~~~~~fD~i~~~~~l~~~~~-~~------------------------------------~~~~~l~~l 104 (175)
+....+.. ..+++++||+|+++.++ ||.+ .+ ++..+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 24678899999999999 5533 22 112236666
Q ss_pred HhhcCCCCceeeccccCCCC--C-C---CCCC-----------CCCceEeeeeccCCCcchhHHHHHHHHcC-CeeEEec
Q 030558 105 LKSYKPKDSQVGHLTKNEQG--E-G---TEGL-----------PWPAFLMSWRRRIGKEDETIFFTSCENAG-LEVKHLG 166 (175)
Q Consensus 105 ~~~l~pgG~~~~~~~~~~~~--~-~---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~ 166 (175)
++.|+|||+++++....... . . .+.. ....+.....+++.. +.+++...++++| |++..+.
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~p-s~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 212 SEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAP-STEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCC-CHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCC-CHHHHHHHHHHcCCceEEEEE
Confidence 89999999999986554332 1 0 0000 000000001123333 4588999999874 7877764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-08 Score=72.37 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=37.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCc----EEEEeCChHHHHHHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLD----ITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~----v~~~D~s~~~l~~~~~~~ 51 (175)
..++.+|||||||+|.++..+++. +.+ |+++|+++.++ +.++++
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l-~~a~~~ 87 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLI-GRLEQR 87 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHH-HHHHHH
T ss_pred CCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHH-HHHHHh
Confidence 346789999999999999999887 445 99999999998 666655
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.1e-08 Score=70.48 Aligned_cols=108 Identities=12% Similarity=0.046 Sum_probs=64.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~i~ 83 (175)
+.++.+|||||||+|.++.++++.. ...|+++|++..+.+... ..... ....+.+.- .+...+..+.+|+|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi----~~~~~--g~~ii~~~~~~dv~~l~~~~~DvVL 161 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI----MRTTL--GWNLIRFKDKTDVFNMEVIPGDTLL 161 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC----CCCBT--TGGGEEEECSCCGGGSCCCCCSEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccc----ccccC--CCceEEeeCCcchhhcCCCCcCEEE
Confidence 3467799999999999999988644 346899999865421110 00000 011111111 122345567899999
Q ss_pred eCCcccCc----ccchHHHHHHHHHHhhcCCC--Cceeecccc
Q 030558 84 ASDILLYV----KQYSNLIKSLSVLLKSYKPK--DSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~----~~~~~~~~~l~~l~~~l~pg--G~~~~~~~~ 120 (175)
+--+. +. .+......+++-+.++|+|| |.|++-+..
T Consensus 162 SDmAp-nsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 162 CDIGE-SSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp ECCCC-CCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred ecCcc-CCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 96554 31 11112224577778899999 988886444
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-07 Score=67.10 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=69.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhh-CCCCCCcceeeccCCCCC---CCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKHSWGDAF---PIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~fD~i 82 (175)
..++||=||.|.|.....+++.. ..+|+.+|+++.++ +.+++.... +.-...-+.+.+..+|.. ....++||+|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv-~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVV-SFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHH-HHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 46899999999999999998865 46799999999998 666555422 111011123333344433 3445689999
Q ss_pred EeCCcccCcccch---HHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~---~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.-.. .....+ --...++.+.+.|+|||.++..
T Consensus 162 i~D~~--dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCT--DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EESCC--CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEeCC--CcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 97311 000000 0127889999999999988875
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=71.43 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCcEEEeCCCccHHHHHHHHh---------------C--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC
Q 030558 9 RRRCIELGSGTGALAIFLRKA---------------M--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 71 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~---------------~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (175)
.-+|+|+||++|..++.+.+. . ..+|+..|...++. ..+-+.+...........+....+..
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDF-ntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDF-NAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCH-HHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHH-HHHHHhcchhcccCCCEEEEecchhh
Confidence 467999999999988644332 0 23589999999886 33332322110000112222222332
Q ss_pred --CCCCCCCccEEEeCCcccCcccc-h------------------------------HHHHHHHHHHhhcCCCCceeecc
Q 030558 72 --FPIPNPDWDLILASDILLYVKQY-S------------------------------NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 72 --~~~~~~~fD~i~~~~~l~~~~~~-~------------------------------~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
..++++++|+|+++.++ ||.+. + ++..+|+..++.|+|||+++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34778899999999999 55332 1 34556888999999999999985
Q ss_pred ccC
Q 030558 119 TKN 121 (175)
Q Consensus 119 ~~~ 121 (175)
...
T Consensus 210 ~gr 212 (359)
T 1m6e_X 210 LGR 212 (359)
T ss_dssp EEC
T ss_pred ecC
Confidence 444
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=68.45 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=48.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCC--C-----
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--N----- 76 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~--v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 76 (175)
..++.+|||||||+|.++. +++ +.+ |+++|+++.|+ +.++++... .+.+.+..+|..... +
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~-~~a~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~ 88 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLA-ARLQTHPFL------GPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHH-HHHHTCTTT------GGGEEEECSCGGGCCHHHHHHHH
T ss_pred CCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHH-HHHHHHhcc------CCceEEEECchhhCCHHHhhccc
Confidence 4467899999999999999 754 467 99999999998 666654432 123444444433321 1
Q ss_pred CCccEEEeCCcc
Q 030558 77 PDWDLILASDIL 88 (175)
Q Consensus 77 ~~fD~i~~~~~l 88 (175)
+..|.|+++-.+
T Consensus 89 ~~~~~vvsNlPY 100 (252)
T 1qyr_A 89 GQPLRVFGNLPY 100 (252)
T ss_dssp TSCEEEEEECCT
T ss_pred CCceEEEECCCC
Confidence 234677776553
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.1e-07 Score=65.36 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=63.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i~~ 84 (175)
.++++||||||++|.++..+++.. ...|.++|+...+.... ..........+.+.-+ +...+..+.+|+|++
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P------~~~~~~~~~iv~~~~~~di~~l~~~~~DlVls 153 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKP------IHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLC 153 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC------CCCCBTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccc------ccccccCCceEEeecCceeeecCCCCcCEEee
Confidence 468899999999999999998753 34689999976431000 0000000011112211 233445678999999
Q ss_pred CCcccCcc----cchHHHHHHHHHHhhcCCC-Cceeecccc
Q 030558 85 SDILLYVK----QYSNLIKSLSVLLKSYKPK-DSQVGHLTK 120 (175)
Q Consensus 85 ~~~l~~~~----~~~~~~~~l~~l~~~l~pg-G~~~~~~~~ 120 (175)
.-+. +.. +......+++-+.++|+|| |.|++-+..
T Consensus 154 D~AP-nsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 154 DIGE-SSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCcC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 5443 311 1111234577778999999 988887544
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-07 Score=70.55 Aligned_cols=119 Identities=11% Similarity=0.028 Sum_probs=76.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCC--CcceeeccCCCCC---CCCCCCc
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITP--ALPHIKHSWGDAF---PIPNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~f 79 (175)
..+|.+|||+.+|+|.=+..++.... ..|++.|+++.-+ +.++++....+... ....+.....+.. +...+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~-~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI-ARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH-HHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH-HHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 45688999999999999999888642 3699999999876 66666665544321 0112222222222 1245689
Q ss_pred cEEEeCCccc--------------Ccccc-------hHHHHHHHHHHhhcCCCCceeeccccCCCCC
Q 030558 80 DLILASDILL--------------YVKQY-------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE 125 (175)
Q Consensus 80 D~i~~~~~l~--------------~~~~~-------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~ 125 (175)
|.|+.-.... ..... .-+.++|....+.+||||+++.++-.....+
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~E 291 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQ 291 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTT
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhh
Confidence 9999622210 00000 1235788899999999999999866654444
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-06 Score=61.79 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC------CCcEEEEeCChH--------------------------HHHHHHHHHHhhC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM------NLDITTSDYNDQ--------------------------EIEDNIAYNSTTN 55 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~------~~~v~~~D~s~~--------------------------~l~~~~~~~~~~~ 55 (175)
..++|||+|+..|..++.++... +.+|+++|..+. .+ +.++++....
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~-~~ar~n~~~~ 184 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSE-EEVRRNFRNY 184 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCH-HHHHHHHHHT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHH-HHHHHHHHHc
Confidence 35789999999999998876642 567999996421 22 4466777776
Q ss_pred CCC-CCcceeeccCCCCCC-CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 56 GIT-PALPHIKHSWGDAFP-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 56 ~~~-~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
+.. .++..+..+..+.++ ...++||+|+.-.-. .+.-...++.+...|+|||.+++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-----y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-----YESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-----cccHHHHHHHHHhhcCCCEEEEE
Confidence 662 444444433333333 335689999874322 12334788999999999997777
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-06 Score=60.59 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=56.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHH-HHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQE-IEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i 82 (175)
+.++.+|+||||++|.++.++++..+. .|.|.++.... + . ...........+.+..+ |........+|+|
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~-~------P~~~~~~Gv~~i~~~~G~Df~~~~~~~~DvV 143 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHE-E------PMLMQSYGWNIVTMKSGVDVFYKPSEISDTL 143 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSC-C------CCCCCSTTGGGEEEECSCCGGGSCCCCCSEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccccc-C------CCcccCCCceEEEeeccCCccCCCCCCCCEE
Confidence 346899999999999999999886222 33444443320 0 0 00000011233443333 4333445589999
Q ss_pred EeCCcccCcc----cchHHHHHHHHHHhhcCCCC-ceeec
Q 030558 83 LASDILLYVK----QYSNLIKSLSVLLKSYKPKD-SQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~----~~~~~~~~l~~l~~~l~pgG-~~~~~ 117 (175)
+|--.- ... +.+....++.-+.+.|+||| .|++-
T Consensus 144 LSDMAP-nSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 144 LCDIGE-SSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp EECCCC-CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeCCCC-CCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 983322 111 11111225666778999999 67664
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-06 Score=62.79 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=38.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT 54 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~ 54 (175)
.+|..|||++||+|..++.+++. +.+++|+|+++.++ +.++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~-~~a~~r~~~ 279 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYA-QLAKERFAR 279 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHH-HHHHHHHHH
Confidence 36889999999999999998775 88999999999998 666655544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-05 Score=63.12 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=69.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--------------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--------------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 72 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--------------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (175)
..+.+|+|-.||+|.+...+.+.. ...++|.|+++.+. ..++-|....+.. .+. +.+++.+
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~-~la~mNl~lhg~~--~~~--I~~~dtL 290 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPY-LLVQMNLLLHGLE--YPR--IDPENSL 290 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHH-HHHHHHHHHHTCS--CCE--EECSCTT
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHH-HHHHHHHHhcCCc--ccc--ccccccc
Confidence 356799999999999987665432 24699999999886 5666666655551 122 3333433
Q ss_pred CC------CCCCccEEEeCCcccCcc-------------cchHHHHHHHHHHhhcC-------CCCceeecc
Q 030558 73 PI------PNPDWDLILASDILLYVK-------------QYSNLIKSLSVLLKSYK-------PKDSQVGHL 118 (175)
Q Consensus 73 ~~------~~~~fD~i~~~~~l~~~~-------------~~~~~~~~l~~l~~~l~-------pgG~~~~~~ 118 (175)
.. ...+||+|+++..+-... ....-...++.+.+.|| |||+..+++
T Consensus 291 ~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 291 RFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp CSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 21 234799999988762110 01112356777888886 699888873
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=6e-06 Score=62.84 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhC-C--C-CCCcceeeccCCCCCCC------CCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-G--I-TPALPHIKHSWGDAFPI------PNP 77 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~------~~~ 77 (175)
++++||=||.|.|....++.+....+|+.+|+++.++ +.+++..... . . ..+.+.+....+|...+ ..+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VV-e~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVI-DGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHH-HHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHH-HHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999887667799999999998 6666543221 0 0 01112233334443321 235
Q ss_pred CccEEEeCCcc-------cCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 78 DWDLILASDIL-------LYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 78 ~fD~i~~~~~l-------~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
+||+|+.-..= .......--..+++.+.+.|+|||.++.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 79999973110 0000001124678888999999997765
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=5.4e-06 Score=58.78 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=61.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i~ 83 (175)
+.++.+|+||||++|.++.+++...+ .+|+|+|+.+...+ .....+..+. +.+.+..+ |....+...+|+|+
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe--~P~~~~s~gw----n~v~fk~gvDv~~~~~~~~Dtll 149 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE--EPVPMSTYGW----NIVKLMSGKDVFYLPPEKCDTLL 149 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--CCCCCCCTTT----TSEEEECSCCGGGCCCCCCSEEE
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc--CcchhhhcCc----CceEEEeccceeecCCccccEEE
Confidence 34678999999999999998877654 45999999774320 0001112222 33444444 32333446799999
Q ss_pred eCCcccCcccch-HH---HHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYS-NL---IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~-~~---~~~l~~l~~~l~pgG~~~~~ 117 (175)
|--.= ..+... +. .++|+-+.+.|++ |.|++-
T Consensus 150 cDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~K 185 (267)
T 3p8z_A 150 CDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK 185 (267)
T ss_dssp ECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred EecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence 83221 111111 22 2356666788888 667665
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=6.1e-05 Score=57.15 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=46.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i~ 83 (175)
..+|.++|||||.+|.++..++++ +..|+|+|+.+ |- ..+.. . +.+.+..++... ...+.||+|+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~-~~l~~---~-------~~V~~~~~d~~~~~~~~~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MA-QSLMD---T-------GQVTWLREDGFKFRPTRSNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CC-HHHHT---T-------TCEEEECSCTTTCCCCSSCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cC-hhhcc---C-------CCeEEEeCccccccCCCCCcCEEE
Confidence 457899999999999999999887 78999999876 21 22111 1 122333333332 3346899999
Q ss_pred eCCcc
Q 030558 84 ASDIL 88 (175)
Q Consensus 84 ~~~~l 88 (175)
|-.+.
T Consensus 276 sDm~~ 280 (375)
T 4auk_A 276 CDMVE 280 (375)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 85443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.7e-05 Score=57.99 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=49.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CC-CCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FP-IPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~fD~ 81 (175)
..+++.++|.+||.|..+..+++. +.+|+|+|.++.++ +.++. ... .++..++.+..+. +. ...+++|.
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai-~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vDg 92 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAV-ARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVDG 92 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHH-HHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcCE
Confidence 346789999999999999999998 77999999999998 66554 322 2333333222211 11 12247888
Q ss_pred EEeC
Q 030558 82 ILAS 85 (175)
Q Consensus 82 i~~~ 85 (175)
|++.
T Consensus 93 IL~D 96 (285)
T 1wg8_A 93 ILAD 96 (285)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8864
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.3e-05 Score=55.94 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=59.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i~ 83 (175)
+.++.+||||||++|.++.+++...+. .|+|+|+.....++ ....+..+. ..+.+.-+ +........+|+|+
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~--P~~~~ql~w----~lV~~~~~~Dv~~l~~~~~D~iv 165 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE--PQLVQSYGW----NIVTMKSGVDVFYRPSECCDTLL 165 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC--CCCCCBTTG----GGEEEECSCCTTSSCCCCCSEEE
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC--cchhhhcCC----cceEEEeccCHhhCCCCCCCEEE
Confidence 346779999999999999987776544 59999997752100 000001111 11222222 22223336799999
Q ss_pred eCCcccCcccch-HH---HHHHHHHHhhcCCC-Cceeec
Q 030558 84 ASDILLYVKQYS-NL---IKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~-~~---~~~l~~l~~~l~pg-G~~~~~ 117 (175)
|--. ...+... +. ..+|+-+.+.|+++ |.|++-
T Consensus 166 cDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K 203 (321)
T 3lkz_A 166 CDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK 203 (321)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence 7322 1112111 22 23666667889888 777775
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-06 Score=77.07 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=46.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCC------CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 9 RRRCIELGSGTGALAIFLRKAMN------LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~------~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
..+|||||.|+|..+..+.+..+ .+++.+|+|+... +.++..... + .+..-.++..+..++...+||+|
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~-~~a~~~f~~--~--di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQAL-EAAQAKLEQ--L--HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSST-TTTTTTHHH--H--TEEEECCCSSCCCC-----CCEE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHH-HHHHHHhhh--c--ccccccccccccccCCCCceeEE
Confidence 46899999999987765544432 2689999998654 333322211 0 01111111111112345679999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++++++ ....++..+++++.++|+|||.+++.
T Consensus 1316 ia~~vl---~~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1316 VCNCAL---ATLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp EEECC-----------------------CCEEEEE
T ss_pred EEcccc---cccccHHHHHHHHHHhcCCCcEEEEE
Confidence 999998 34456669999999999999988775
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.60 E-value=4.3e-05 Score=55.88 Aligned_cols=102 Identities=10% Similarity=-0.043 Sum_probs=65.6
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
+.+..+||+=+|||.+++.+.+. +.+++.+|.++..+ +.+++|.... .++..+..+....+ ..+...||+|+
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~-~~L~~Nl~~~---~~~~V~~~D~~~~L~~l~~~~~~fdLVf 164 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEY-NFLLKLPHFN---KKVYVNHTDGVSKLNALLPPPEKRGLIF 164 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHH-HHHTTSCCTT---SCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred hcCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHH-HHHHHHhCcC---CcEEEEeCcHHHHHHHhcCCCCCccEEE
Confidence 35678999999999999999884 78899999999887 7777776541 22222222211111 12234699999
Q ss_pred eCCcccCcccchHHHHHHHHHHh--hcCCCCceee
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVG 116 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~ 116 (175)
+-..+ .. ..+..++++.+.+ .+.|+|.+++
T Consensus 165 iDPPY-e~--k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 165 IDPSY-ER--KEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp ECCCC-CS--TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred ECCCC-CC--CcHHHHHHHHHHHhCccCCCeEEEE
Confidence 97775 31 1233455555554 4568886666
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0003 Score=52.07 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=42.0
Q ss_pred CCCCccEEEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHH
Q 030558 75 PNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFF 152 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (175)
....||+|+.- .+ -....++| ..++++++++++|||+++- |.. ...+.
T Consensus 183 ~~~~~Da~flD-gF-sP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yta--------------------------ag~VR 232 (308)
T 3vyw_A 183 ENFKADAVFHD-AF-SPYKNPELWTLDFLSLIKERIDEKGYWVS--YSS--------------------------SLSVR 232 (308)
T ss_dssp CSCCEEEEEEC-CS-CTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SCC--------------------------CHHHH
T ss_pred cccceeEEEeC-CC-CcccCcccCCHHHHHHHHHHhCCCcEEEE--EeC--------------------------cHHHH
Confidence 34479998873 22 11222222 4899999999999995543 221 26677
Q ss_pred HHHHHcCCeeEEec
Q 030558 153 TSCENAGLEVKHLG 166 (175)
Q Consensus 153 ~~~~~~g~~~~~~~ 166 (175)
+.++++||+|+.+.
T Consensus 233 R~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 233 KSLLTLGFKVGSSR 246 (308)
T ss_dssp HHHHHTTCEEEEEE
T ss_pred HHHHHCCCEEEecC
Confidence 88999999999874
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00096 Score=50.77 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=63.2
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-------CCCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-------AFPIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 75 (175)
...+|.+||=+|+|. |..+..+++..|. .|+++|.+++.. +.++.. +.. ..+.....+ .....
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKR-RLAEEV----GAT---ATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHHHH----TCS---EEECTTSSCHHHHHHSTTSSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHc----CCC---EEECCCCcCHHHHHHhhhhcc
Confidence 345788999999985 8888999998888 899999999775 444332 110 011111101 00122
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+|+|+-.-. .+ ..++...++++++|++++.
T Consensus 251 ~gg~Dvvid~~G------~~---~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIECAG------VA---ETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEECSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCC------CH---HHHHHHHHHhccCCEEEEE
Confidence 347999987532 12 5778899999999998876
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0047 Score=46.28 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=45.2
Q ss_pred CcEEEeCCCccHHHHHHHHhCC-Cc-E-EEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCccEEEe
Q 030558 10 RRCIELGSGTGALAIFLRKAMN-LD-I-TTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWDLILA 84 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~-~~-v-~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~i~~ 84 (175)
-+++|+-||.|.+++-+.+.+- .+ | .++|+++..+ +..+.|..... +..+..+.. .+....+|++++
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~-~ty~~N~~~~~-------~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIAN-KIYSKNFKEEV-------QVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHH-HHHHHHHCCCC-------BCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHH-HHHHHHCCCCc-------ccCChhhcCHHHhccCCCCEEEe
Confidence 4799999999999999977631 34 6 7999999886 66666653321 111111111 011126899998
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
....
T Consensus 83 gpPC 86 (327)
T 3qv2_A 83 SPPC 86 (327)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 7665
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=50.84 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=39.9
Q ss_pred cCCCcEEEeCCCccHHHHHHH-HhCC--CcEEEEeCChHHHHHHHHHHHhh
Q 030558 7 IERRRCIELGSGTGALAIFLR-KAMN--LDITTSDYNDQEIEDNIAYNSTT 54 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~-~~~~--~~v~~~D~s~~~l~~~~~~~~~~ 54 (175)
.++..++|+||+.|..+..++ +..+ .+|+++|++|... +.+++|...
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~-~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHHHh
Confidence 578999999999999999987 4443 5899999999887 778888876
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0018 Score=48.52 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=37.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.+.+.+++||.||.|.+++.+.+.+...|.++|+++..+ +..+.|..
T Consensus 8 ~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~-~t~~~N~~ 54 (327)
T 2c7p_A 8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-EVYEMNFG 54 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-HHHHHHHS
T ss_pred ccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHcC
Confidence 345688999999999999999887444589999999887 66666653
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0054 Score=46.22 Aligned_cols=95 Identities=8% Similarity=0.055 Sum_probs=61.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-CC---
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-IP--- 75 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~--- 75 (175)
..+|++||=+|+|. |..+..+++..|.+|+++|.+++.+ +.++. .+.. ..+.....+.. . ..
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKN----CGAD---VTLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHH----TTCS---EEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHH----hCCC---EEEcCcccccHHHHHHHHhcccc
Confidence 45789999999975 8888889888888899999998775 44332 1220 11111100111 0 00
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+|+-...- + ..++...++++|+|+++..
T Consensus 238 g~g~D~vid~~g~------~---~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 238 GDLPNVTIDCSGN------E---KCITIGINITRTGGTLMLV 270 (352)
T ss_dssp SSCCSEEEECSCC------H---HHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 2468999875321 1 4678889999999988876
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00011 Score=55.25 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=63.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CCCCCCCcc
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD 80 (175)
...+|++||=.|+|. |..+..+++..|.+|+++|.+++.+ +.+++. +.. ..+.....+. .....+.+|
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~---~~i~~~~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKL-NLARRL----GAE---VAVNARDTDPAAWLQKEIGGAH 234 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHT----TCS---EEEETTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHc----CCC---EEEeCCCcCHHHHHHHhCCCCC
Confidence 455789999999985 9999999998899999999999776 444321 220 1111110000 000113688
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-... .. ..++...++++|+|+++..
T Consensus 235 ~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 235 GVLVTAV------SP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEESSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred EEEEeCC------CH---HHHHHHHHHhccCCEEEEe
Confidence 8876432 12 6788899999999988876
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00048 Score=52.37 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=62.6
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 78 (175)
...+|.+||-+|+|. |..+..+++..+. .|+++|.+++.+ +.++.. +.. ..+.....+ .. ....+.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~---~vi~~~~~~~~~~~~~~~~gg 258 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQL----GAT---HVINSKTQDPVAAIKEITDGG 258 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHH----TCS---EEEETTTSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHHc----CCC---EEecCCccCHHHHHHHhcCCC
Confidence 455789999999986 8888888887787 599999999775 444322 110 011111000 00 111237
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-...- + ..++...++++|+|++++.
T Consensus 259 ~D~vid~~g~------~---~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 259 VNFALESTGS------P---EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEEEEECSCC------H---HHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEECCCC------H---HHHHHHHHHHhcCCEEEEe
Confidence 9999865331 2 5678899999999988876
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0039 Score=47.05 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=61.8
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc------CCCCC-CCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS------WGDAF-PIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~ 75 (175)
...+|.+||-+|+|. |..+..+++..|. +|+++|.+++.+ +.++. .+.. ..+... +.+.. ...
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKE----IGAD---LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH----hCCC---EEEcCcccccchHHHHHHHHh
Confidence 345789999999985 8888999998888 899999998765 44332 1220 111111 00000 000
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+|+-.-.- + ..++...++++|+|+++..
T Consensus 240 ~~g~D~vid~~g~------~---~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 240 GCKPEVTIECTGA------E---ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp TSCCSEEEECSCC------H---HHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECCCC------h---HHHHHHHHHhcCCCEEEEE
Confidence 1468999875321 1 4678889999999988876
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0014 Score=49.60 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=36.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHH
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~ 52 (175)
++..|||||.|.|.++..|+... +.+|+++++++..+ ..++...
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~-~~L~~~~ 102 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKF 102 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH-HHHHHhc
Confidence 45889999999999999998753 56899999999876 6666544
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.01 Score=44.58 Aligned_cols=93 Identities=19% Similarity=0.133 Sum_probs=60.2
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCCCcc
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~fD 80 (175)
+|++||=+|+|. |..+..+++..|. +|+++|.+++.+ +.++.. +.. ..+.....+ .. . .....+|
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRR-ELAKKV----GAD---YVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-HHHHHH----TCS---EEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCC---EEECCCCcCHHHHHHHHcCCCCCC
Confidence 789999999974 8888888888788 899999998765 444321 110 011110000 00 0 1123699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-...- + ..++...+.++++|+++..
T Consensus 239 ~vid~~g~------~---~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 239 VFLEFSGA------P---KALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEEECSCC------H---HHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 99875331 1 5678889999999988776
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0084 Score=45.29 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=63.3
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeec------cCCCCC-C-C
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH------SWGDAF-P-I 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~-~ 74 (175)
...+|.+||=+|+|. |..+..+++..|.+ |+++|.+++.+ +.++.. ..... . ... ++.+.. . .
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l-~~~~~----~-~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL-KFAKEI-CPEVV----T-HKVERLSAEESAKKIVESF 248 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH-HHHHHH-CTTCE----E-EECCSCCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh-chhcc----c-ccccccchHHHHHHHHHHh
Confidence 345788999999975 89999999988887 99999999876 444432 21110 0 000 010000 0 1
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
....+|+|+-.-.- + ..++...++++++|++++.
T Consensus 249 ~g~g~Dvvid~~g~------~---~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 249 GGIEPAVALECTGV------E---SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SSCCCSEEEECSCC------H---HHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCCEEEECCCC------h---HHHHHHHHHhcCCCEEEEE
Confidence 13479999875321 1 4678899999999998876
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00077 Score=50.80 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=62.2
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
...+|.+||=+|+|. |..+..+++..|.+|+++|.+++.+ +.++. .+. ..+. . +.... ...+|+|+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~----lGa----~~v~-~--~~~~~-~~~~D~vi 239 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKK-QDALS----MGV----KHFY-T--DPKQC-KEELDFII 239 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTH-HHHHH----TTC----SEEE-S--SGGGC-CSCEEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHh----cCC----Ceec-C--CHHHH-hcCCCEEE
Confidence 455789999999986 8888999998899999999999776 44432 122 1111 1 11111 12799998
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.-.- . ..++...++++|+|+++..
T Consensus 240 d~~g~---~------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 240 STIPT---H------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp ECCCS---C------CCHHHHHTTEEEEEEEEEC
T ss_pred ECCCc---H------HHHHHHHHHHhcCCEEEEE
Confidence 64331 1 2567788999999998887
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.012 Score=43.93 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=44.0
Q ss_pred cEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 11 RCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+|+||=||.|.+++-+.+. |.+ |.++|+++..+ +..+.|... ..+..+..+.....-...|++++....
T Consensus 2 kvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~-~ty~~N~~~-------~~~~~DI~~i~~~~~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIW-KTYESNHSA-------KLIKGDISKISSDEFPKCDGIIGGPPS 71 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTH-HHHHHHCCS-------EEEESCGGGCCGGGSCCCSEEECCCCG
T ss_pred eEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHH-HHHHHHCCC-------CcccCChhhCCHhhCCcccEEEecCCC
Confidence 6999999999999999776 555 78999999886 555555321 112222211111112358999886554
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00094 Score=46.05 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=59.5
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C-CC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-IP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~ 75 (175)
...+|++||-.|+ |.|.....+++..|.+|+++|.+++.+ +.++. .+. .. ..+..+.. . ..
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~-~~~~~----~g~----~~-~~d~~~~~~~~~~~~~~~ 104 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSR----LGV----EY-VGDSRSVDFADEILELTD 104 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHT----TCC----SE-EEETTCSTHHHHHHHHTT
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCC----CE-EeeCCcHHHHHHHHHHhC
Confidence 4557899999994 458777777776688999999998765 33322 122 11 11111110 0 11
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+++.+.. . ..++...++++|+|+++..
T Consensus 105 ~~~~D~vi~~~g-------~---~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 105 GYGVDVVLNSLA-------G---EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TCCEEEEEECCC-------T---HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEECCc-------h---HHHHHHHHHhccCCEEEEE
Confidence 236999986532 1 4678889999999988876
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=50.24 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=61.3
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
...+|.+||-+|+|. |..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.....+......+.+|+|+
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~-~~a~~l----Ga~---~vi~~~~~~~~~~~~~g~Dvvi 262 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKAL----GAD---EVVNSRNADEMAAHLKSFDFIL 262 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHH----TCS---EEEETTCHHHHHTTTTCEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CCc---EEeccccHHHHHHhhcCCCEEE
Confidence 345789999999985 8888899998888999999999776 444431 110 0111100000000114799998
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.-.- . ..++...++++|+|+++..
T Consensus 263 d~~g~---~------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 263 NTVAA---P------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp ECCSS---C------CCHHHHHTTEEEEEEEEEC
T ss_pred ECCCC---H------HHHHHHHHHhccCCEEEEe
Confidence 65332 1 3456788999999988775
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=50.16 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=62.6
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~ 77 (175)
...+|.+||=+|+|. |..+..+++..|. +|+++|.+++.+ +.+++.. .. ..+.....+ .. . ....
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~lG----a~---~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIALEYG----AT---DIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHH-HHHHHHT----CC---EEECGGGSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHhC----Cc---eEEcCCCcCHHHHHHHHcCCC
Confidence 345789999999986 8889999998887 799999998765 4444321 10 111111111 00 1 1223
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-.- + .+++...++++|+|+++..
T Consensus 235 g~D~v~d~~g~------~---~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 235 GVDKVVIAGGD------V---HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CEEEEEECSSC------T---THHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCC------h---HHHHHHHHHHhcCCEEEEe
Confidence 69999864221 1 5678889999999998876
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.003 Score=48.47 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=63.3
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----C-CC-CC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----F-PI-PN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~-~~ 76 (175)
...+|.+||-+|||. |..+..+++..+. +|+++|.+++.+ +.++. .+. ..+.....+. . .. ..
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~----lGa----~~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL-KLLSD----AGF----ETIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHT----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHH----cCC----cEEcCCCcchHHHHHHHHhCC
Confidence 345789999999986 9999999887787 899999999775 44332 122 1121111110 0 00 12
Q ss_pred CCccEEEeCCcccCccc-----chHHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~-----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+|+|+-.-.-..... .......+++..++++++|++++.
T Consensus 253 ~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 253 PEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 26999987543200000 000115788899999999988765
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0012 Score=48.44 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=52.7
Q ss_pred cCCCcEEEeCC------CccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCC
Q 030558 7 IERRRCIELGS------GTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGc------G~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (175)
.-|.+|||+|+ -+|+. .+++.. +..|+++|+++-.. .. . ..+..+... ....+.
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da--~-~~IqGD~~~--~~~~~k 169 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DA--D-STLIGDCAT--VHTANK 169 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SS--S-EEEESCGGG--EEESSC
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CC--C-eEEEccccc--cccCCC
Confidence 34899999996 56773 343333 34799999988331 00 0 112222211 112368
Q ss_pred ccEEEeCCcc--cCccc------chHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDIL--LYVKQ------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l--~~~~~------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|+|-..- .-..+ ..-...++.-+.+.|+|||.|++-
T Consensus 170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 9999982111 00011 112346677777899999988885
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0052 Score=47.10 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=63.5
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-CCCC
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-IPNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 77 (175)
..+|.+||=+|+|. |..+..+|+..|. .|+++|.+++.+ +.++. .+. ..+.....+.. . ....
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~-~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g~ 253 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKA----QGF----EIADLSLDTPLHEQIAALLGEP 253 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHH----TTC----EEEETTSSSCHHHHHHHHHSSS
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHH----cCC----cEEccCCcchHHHHHHHHhCCC
Confidence 45789999999976 9999999998887 699999999776 44432 122 11211111100 0 0123
Q ss_pred CccEEEeCCcc---------cCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDIL---------LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l---------~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-.- ++.+..+ .+++...++++++|++++.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 254 EVDCAVDAVGFEARGHGHEGAKHEAPA---TVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTT---HHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCCcccccccccccccchH---HHHHHHHHHHhcCCEEEEe
Confidence 69999865332 0111122 5788899999999988775
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.006 Score=45.30 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=58.9
Q ss_pred cEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCCCCCCCCccEEEeCCc
Q 030558 11 RCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 11 ~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~ 87 (175)
+||=.|+ | .|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.... ........+.+|+|+-.-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~~d~v~d~~g 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTH-GYLKSL----GAN---RILSRDEFAESRPLEKQLWAGAIDTVG 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH-HHHHHH----TCS---EEEEGGGSSCCCSSCCCCEEEEEESSC
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CCC---EEEecCCHHHHHhhcCCCccEEEECCC
Confidence 4999997 5 59999999998899999999999776 554432 110 1111111 1111223457998876421
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. ..++...++++|+|+++..
T Consensus 221 --------~--~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 221 --------D--KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp --------H--HHHHHHHHTEEEEEEEEEC
T ss_pred --------c--HHHHHHHHHHhcCCEEEEE
Confidence 1 4788899999999988876
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0023 Score=48.72 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=62.6
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCC-----CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAF-----PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~ 76 (175)
...+|.+||=+|+|. |..+..+++..+. +|+++|.+++.+ +.+++ .+.. ..+.... .+.. ....
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~-~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY-ETAKK----FGVN---EFVNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHH-HHHHT----TTCC---EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----cCCc---EEEccccCchhHHHHHHHhcC
Confidence 455789999999985 8888899888787 799999999776 44332 1220 1111110 0000 1122
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-... .+ ..++...+.++++ |++++.
T Consensus 262 gg~D~vid~~g------~~---~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 262 GGVDYSFECIG------NV---SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SCBSEEEECSC------CH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCC------CH---HHHHHHHHHhhccCCEEEEE
Confidence 37999987532 12 5778899999997 988876
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.012 Score=44.57 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=62.1
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCC-----CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAF-----PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~ 76 (175)
...+|++||=+|+|. |..+..+++..+. +|+++|.+++.+ +.+++. +.. ..+.... .+.. ....
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVF----GAT---DFVNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT----TCC---EEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHh----CCc---eEEeccccchhHHHHHHHHhC
Confidence 455789999999975 8888889888888 799999999776 444321 220 1111110 0000 0112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-.-.- + ..++...++++++ |+++..
T Consensus 261 ~g~D~vid~~g~------~---~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 261 GGVDFSLECVGN------V---GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SCBSEEEECSCC------H---HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCCC------H---HHHHHHHHHhhcCCcEEEEE
Confidence 368999865321 2 5678899999999 988876
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0015 Score=48.79 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=60.8
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CC-----CCC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AF-----PIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~ 75 (175)
...+|++||-.|+ |.|..+..+++..|.+|+++|.+++.+ +.++. . +. . ..++..+ .. ...
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~-~~~~~-~---g~----~-~~~d~~~~~~~~~~~~~~~ 211 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-AYLKQ-I---GF----D-AAFNYKTVNSLEEALKKAS 211 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH-T---TC----S-EEEETTSCSCHHHHHHHHC
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHh-c---CC----c-EEEecCCHHHHHHHHHHHh
Confidence 4557899999997 468888888787788999999998775 43322 1 11 0 1112111 00 001
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+|+++.+..- ..++...++++++|++++.
T Consensus 212 ~~~~d~vi~~~g~----------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 212 PDGYDCYFDNVGG----------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp TTCEEEEEESSCH----------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCCeEEEECCCh----------HHHHHHHHHHhcCCEEEEE
Confidence 2479999876431 3478888999999988776
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0036 Score=47.41 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=62.3
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-CCC
Q 030558 4 REWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-IPN 76 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~ 76 (175)
....+|.+||=+|+|. |..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+. ...+.. . ...
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~---~vi~-~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKL-DRAFAL----GAD---HGIN-RLEEDWVERVYALTGD 255 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH----TCS---EEEE-TTTSCHHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhH-HHHHHc----CCC---EEEc-CCcccHHHHHHHHhCC
Confidence 3456789999999985 8888999998899999999998775 444322 110 1111 000000 0 112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+|+|+-...- ..++...++++|+|++++.
T Consensus 256 ~g~D~vid~~g~----------~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 256 RGADHILEIAGG----------AGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp CCEEEEEEETTS----------SCHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEECCCh----------HHHHHHHHHhhcCCEEEEE
Confidence 379998864321 3467788899999988876
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=44.75 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=62.2
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-----CCCCC-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-----WGDAF-PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~ 76 (175)
...+|.+||=+|+|. |..+..+|+..+. +|+++|.+++.+ +.++.. +.. ..+... +.+.. ....
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~---~vi~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIEL----GAT---ECLNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHT----TCS---EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHHc----CCc---EEEecccccchHHHHHHHHhC
Confidence 455789999999985 8888888887787 799999999775 444321 220 111111 00000 1112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-.-.- + ..++...++++++ |+++..
T Consensus 260 gg~Dvvid~~g~------~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 260 GGVDYAVECAGR------I---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SCBSEEEECSCC------H---HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCCC------H---HHHHHHHHHHhcCCCEEEEE
Confidence 379999865321 2 5678899999999 988776
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.014 Score=44.25 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=62.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCC-----CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAF-----PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~ 76 (175)
...+|.+||=+|+|. |..+..+++..+. +|+++|.+++.+ +.++.. +.. ..+.... .+.. ....
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~---~vi~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKAL----GAT---DCLNPRELDKPVQDVITELTA 263 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT----TCS---EEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHh----CCc---EEEccccccchHHHHHHHHhC
Confidence 445789999999985 8888899998888 799999999775 444321 220 1111110 0000 0112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-.-. .+ ..++...+.++++ |++++.
T Consensus 264 ~g~Dvvid~~G------~~---~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 264 GGVDYSLDCAG------TA---QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SCBSEEEESSC------CH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CCccEEEECCC------CH---HHHHHHHHHhhcCCCEEEEE
Confidence 37899986432 12 5678899999999 988776
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0025 Score=47.93 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=62.3
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceee-ccCCCCCCCCCCCcc
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFPIPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD 80 (175)
.. +|.+||=+|+|. |..+..+++.. |.+|+++|.+++.+ +.++.. +....+.... -++..... ....+|
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~~vi~~~~~~~~~~~~~-~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHR-DFALEL----GADYVSEMKDAESLINKLT-DGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHH-HHHHHH----TCSEEECHHHHHHHHHHHH-TTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HHHHHh----CCCEEeccccchHHHHHhh-cCCCcc
Confidence 45 789999999975 88889999988 88999999998775 444332 1100000000 00000000 123699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-.-.- + ..++...++++|+|+++..
T Consensus 241 ~vid~~g~------~---~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 241 IAIDLVGT------E---ETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEESSCC------H---HHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCC------h---HHHHHHHHHhhcCCEEEEe
Confidence 99875332 1 4678889999999988776
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.014 Score=44.24 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=62.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-----CCCCC-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-----WGDAF-PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~ 76 (175)
...+|.+||=+|+|. |..+..+++..+. +|+++|.+++.+ +.++.. +.. ..+... +.+.. ....
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~-~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEF----GAT---ECINPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHH----TCS---EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHc----CCc---eEeccccccccHHHHHHHHhC
Confidence 455789999999975 8888888887787 799999999776 444422 110 011111 00000 1112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-...- + ..++...+.++++ |+++..
T Consensus 259 ~g~D~vid~~g~------~---~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 259 GGVDYSFECIGN------V---KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SCBSEEEECSCC------H---HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCCc------H---HHHHHHHHhhccCCcEEEEE
Confidence 379999865321 2 5678899999999 988876
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0051 Score=45.96 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=61.3
Q ss_pred cccCCCcEEEeC-CC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---C-C-CCCC
Q 030558 5 EWIERRRCIELG-SG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---F-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~ 77 (175)
...+|++||=.| +| .|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.....+. . . ....
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----ga~---~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKL-KIAKEY----GAE---YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT----TCS---EEEETTTSCHHHHHHHHTTTS
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CCc---EEEeCCCchHHHHHHHHhCCC
Confidence 456789999999 44 58888888888899999999998775 443321 220 1111111110 0 0 1134
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-+..- ..++...++++++|+++..
T Consensus 217 g~D~vid~~g~----------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 217 GVDASFDSVGK----------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp CEEEEEECCGG----------GGHHHHHHHEEEEEEEEEC
T ss_pred CceEEEECCCh----------HHHHHHHHHhccCCEEEEE
Confidence 69999875331 3567788899999988876
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.40 E-value=0.018 Score=43.75 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=62.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC-CCCC-----CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW-GDAF-----PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~ 76 (175)
...+|.+||=+|+|. |..+..+++..+. +|+++|.+++.+ +.+++. +.. ..+.... .+.. ....
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAKEV----GAT---ECVNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT----TCS---EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHh----CCc---eEecccccchhHHHHHHHHhC
Confidence 455789999999975 8888888888887 799999999776 444321 220 1111110 0000 1112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
+.+|+|+-.-.- + ..++...++++++ |+++..
T Consensus 260 ~g~D~vid~~g~------~---~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 260 GGVDFSFEVIGR------L---DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SCBSEEEECSCC------H---HHHHHHHHHBCTTTCEEEEC
T ss_pred CCCcEEEECCCC------H---HHHHHHHHHhhcCCcEEEEe
Confidence 379999865321 2 5678889999999 988776
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0054 Score=45.95 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=60.2
Q ss_pred ccccCCCcEEEeCCC--ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---C-C-CCC
Q 030558 4 REWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---F-P-IPN 76 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~ 76 (175)
....+|++||=+|+| .|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.....+. . . ...
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~l----ga~---~~~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT-EELLRL----GAA---YVIDTSTAPLYETVMELTNG 211 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhC----CCc---EEEeCCcccHHHHHHHHhCC
Confidence 345678999999986 58888888887799999999998775 444432 110 0111110000 0 0 112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+|+|+-+..- ....+..++++++|+++..
T Consensus 212 ~g~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 212 IGADAAIDSIGG----------PDGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp SCEEEEEESSCH----------HHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEECCCC----------hhHHHHHHHhcCCCEEEEE
Confidence 379999875332 2223455899999988876
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.005 Score=46.19 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=61.4
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CC-----CCC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AF-----PIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~ 75 (175)
...+|++||-.|+ |.|..+..+++..|.+|+++|.+++.+ +.+++. .+. .. .++..+ .. ...
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~-~~~~~~---~g~----~~-~~d~~~~~~~~~~~~~~~ 222 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKV-DLLKTK---FGF----DD-AFNYKEESDLTAALKRCF 222 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT---SCC----SE-EEETTSCSCSHHHHHHHC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHH---cCC----ce-EEecCCHHHHHHHHHHHh
Confidence 4557899999997 468888888887788999999998765 433311 122 11 111111 11 001
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+|+++.+..- ..++...++++++|++++.
T Consensus 223 ~~~~d~vi~~~g~----------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 223 PNGIDIYFENVGG----------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp TTCEEEEEESSCH----------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCCcEEEECCCH----------HHHHHHHHHHhcCCEEEEE
Confidence 2468999875331 4678889999999988776
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0093 Score=44.68 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=61.0
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-C-----CCCCCC
Q 030558 6 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-F-----PIPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~ 78 (175)
..+|++||=+|+| .|..+..+++..|.+|+++|.+++.+ +.++. .+. .. .++..+. . ... +.
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~----lGa----~~-~~d~~~~~~~~~~~~~~-~~ 230 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKL-ELAKE----LGA----DL-VVNPLKEDAAKFMKEKV-GG 230 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHH-HHHHH----TTC----SE-EECTTTSCHHHHHHHHH-SS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----CCC----CE-EecCCCccHHHHHHHHh-CC
Confidence 4568999999997 48888888888889999999998775 44332 122 11 1111110 0 001 46
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-+..- + ..++...++++++|+++..
T Consensus 231 ~d~vid~~g~------~---~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 231 VHAAVVTAVS------K---PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEEESSCC------H---HHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCC------H---HHHHHHHHHhhcCCEEEEe
Confidence 8998875331 1 5678888999999988776
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0064 Score=45.28 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=61.4
Q ss_pred cccCCCcEEEeC-CC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCC
Q 030558 5 EWIERRRCIELG-SG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~ 77 (175)
...+|++||=.| +| .|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.....+ .. . ....
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----Ga~---~~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKA-AHAKAL----GAW---ETIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHHH----TCS---EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CCC---EEEeCCCccHHHHHHHHhCCC
Confidence 455789999999 44 59999888887799999999998776 444321 110 111111100 00 0 1224
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-+..- ..++...++++++|+++..
T Consensus 209 g~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 209 KCPVVYDGVGQ----------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp CEEEEEESSCG----------GGHHHHHTTEEEEEEEEEC
T ss_pred CceEEEECCCh----------HHHHHHHHHhcCCCEEEEE
Confidence 79999875331 3566788999999988887
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0014 Score=49.09 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=62.0
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 78 (175)
...+|++||=.|+ |.|..+..+++..|.+|+++|.+++.+ +.+.+. .+.. ..+.....+ .. ....+.
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~---~g~~---~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKC-RFLVEE---LGFD---GAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT---TCCS---EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHH---cCCC---EEEECCCHHHHHHHHHhcCCC
Confidence 4557899999998 458888888888899999999998765 443211 1220 111111100 00 011346
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+++-+..- ..++...++++++|+++..
T Consensus 219 ~d~vi~~~g~----------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 219 IDVFFDNVGG----------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp EEEEEESSCH----------HHHHHHHTTEEEEEEEEEC
T ss_pred ceEEEECCCc----------chHHHHHHHHhhCCEEEEE
Confidence 9998874321 4678889999999988876
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0069 Score=45.91 Aligned_cols=93 Identities=11% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCcEEEeC-CC-ccHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeec--cCCCC-CCCCCCCccE
Q 030558 8 ERRRCIELG-SG-TGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDA-FPIPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlG-cG-~G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~fD~ 81 (175)
+|.+||=.| +| .|..+..+++. .+.+|+++|.+++.+ +.++. .+.. ..+.. ++.+. .....+.+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~-~~~~~----lGad---~vi~~~~~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQ-EWVKS----LGAH---HVIDHSKPLAAEVAALGLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHH-HHHHH----TTCS---EEECTTSCHHHHHHTTCSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHHHH----cCCC---EEEeCCCCHHHHHHHhcCCCceE
Confidence 678899998 66 49999999987 588999999998775 44432 1220 01110 00000 1122357999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-... .+ ..++...++++|+|+++..
T Consensus 243 vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFSTTH------TD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEECSC------HH---HHHHHHHHHSCTTCEEEEC
T ss_pred EEECCC------ch---hhHHHHHHHhcCCCEEEEE
Confidence 887422 11 5778899999999998876
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=47.56 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=57.8
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
...+|.+||=+|+|. |..+..+++..|.+|+++| +++.+ +.+++.... ..+. + .+.+ .+.+|+|+
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~-~~~~~lGa~-------~v~~-d-~~~v---~~g~Dvv~ 204 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQ-ALAAKRGVR-------HLYR-E-PSQV---TQKYFAIF 204 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCH-HHHHHHTEE-------EEES-S-GGGC---CSCEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhH-HHHHHcCCC-------EEEc-C-HHHh---CCCccEEE
Confidence 456789999999974 9999999998899999999 88765 444432111 0111 1 1111 45799998
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.-.- ..+....++++|+|+++..
T Consensus 205 d~~g~----------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 205 DAVNS----------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp CC-----------------TTGGGEEEEEEEEEE
T ss_pred ECCCc----------hhHHHHHHHhcCCCEEEEE
Confidence 64221 2235678899999988876
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.034 Score=42.68 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=58.8
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~ 77 (175)
...+|.+||=+|+|. |..+..+++..|. +|+++|.++..+ +.+++.. .. ..+.....+ .. . ....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~~~~lG----a~---~vi~~~~~~~~~~i~~~t~g~ 281 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRR-NLAKELG----AD---HVIDPTKENFVEAVLDYTNGL 281 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHT----CS---EEECTTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHcC----CC---EEEcCCCCCHHHHHHHHhCCC
Confidence 456789999999975 8888999998888 899999999775 4444321 10 011110000 00 0 1123
Q ss_pred CccEEEeCCcccCcccch-HHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYS-NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~-~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-.- .. ....+++-+.++++++|++++.
T Consensus 282 g~D~vid~~g~-----~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 282 GAKLFLEATGV-----PQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CCSEEEECSSC-----HHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCCEEEECCCC-----cHHHHHHHHHHHHhccCCCcEEEEe
Confidence 69999864321 11 1112233333444999988886
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0069 Score=45.42 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=58.8
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CC-----CCCCCCc
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AF-----PIPNPDW 79 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~f 79 (175)
+|.+||=+|+|. |..+..+++..|. +|+++|.+++.+ +.++.. . .. .++..+ .. ......+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~l-----a----~~-v~~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL-AFARPY-----A----DR-LVNPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH-GGGTTT-----C----SE-EECTTTSCHHHHHHHHHSSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh-----H----Hh-ccCcCccCHHHHHHHhcCCCC
Confidence 789999999874 8888888888888 899999988664 332211 1 00 111111 00 0012468
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+-.-. .+ ..++...+.++++|+++..
T Consensus 233 D~vid~~g------~~---~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 233 EVLLEFSG------NE---AAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp EEEEECSC------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 99986532 11 5678889999999988776
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=43.75 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=62.6
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc--CCCCC-CC-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS--WGDAF-PI-PNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~~ 78 (175)
...+|.+||=+|+|. |..+..+++.. +.+|+++|.+++.+ +.++.. +.. ..+... +.+.. .. ....
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~-~~~~~l----Ga~---~~i~~~~~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL-ALAREV----GAD---AAVKSGAGAADAIRELTGGQG 239 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHH-HHHHHT----TCS---EEEECSTTHHHHHHHHHGGGC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc----CCC---EEEcCCCcHHHHHHHHhCCCC
Confidence 456789999999985 88888888876 78999999999775 444321 220 111110 00000 00 1236
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-.-.- + ..++...++++++|++++.
T Consensus 240 ~d~v~d~~G~------~---~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 240 ATAVFDFVGA------Q---STIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEEESSCC------H---HHHHHHHHHEEEEEEEEEC
T ss_pred CeEEEECCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 8998875321 1 5788899999999998876
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=47.96 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=61.1
Q ss_pred ccccCCCcEEEeC-CC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCC
Q 030558 4 REWIERRRCIELG-SG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNP 77 (175)
Q Consensus 4 ~~~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~ 77 (175)
....+|++||=.| +| .|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.....+ .. ....+
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~---~~~~~~~~~~~~~~~~~~~~ 234 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKC-EACERL----GAK---RGINYRSEDFAAVIKAETGQ 234 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TCS---EEEETTTSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CCC---EEEeCCchHHHHHHHHHhCC
Confidence 3456789999994 44 58888888888899999999999776 444331 110 111111100 00 00134
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-+..- ..++...++++++|+++..
T Consensus 235 g~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 235 GVDIILDMIGA----------AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp CEEEEEESCCG----------GGHHHHHHTEEEEEEEEEC
T ss_pred CceEEEECCCH----------HHHHHHHHHhccCCEEEEE
Confidence 69999875432 2467788899999988776
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0076 Score=44.91 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=59.0
Q ss_pred cCCC-cEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEE
Q 030558 7 IERR-RCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~-~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i 82 (175)
.++. +||=.|+ | .|..+..+++..|.+|++++.+++.+ +.++.. +....+.....+ .+. .....+.+|+|
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~-~~~~~l----Ga~~v~~~~~~~-~~~~~~~~~~~~d~v 221 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA-DYLKQL----GASEVISREDVY-DGTLKALSKQQWQGA 221 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH-HHHHHH----TCSEEEEHHHHC-SSCCCSSCCCCEEEE
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CCcEEEECCCch-HHHHHHhhcCCccEE
Confidence 3454 8999997 5 59988888888789999999988665 444321 110000000000 111 11223468998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-+-. . ..++...++++++|+++..
T Consensus 222 id~~g-----~-----~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 222 VDPVG-----G-----KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EESCC-----T-----HHHHHHHTTEEEEEEEEEC
T ss_pred EECCc-----H-----HHHHHHHHhhcCCCEEEEE
Confidence 86532 1 3577889999999988776
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0087 Score=45.62 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=61.2
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc------CCCCC-CC-C
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS------WGDAF-PI-P 75 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~-~ 75 (175)
..+|.+||=+|+|. |..+..+++..| .+|+++|.+++.+ +.++. .+.. ..+... +.+.. .. .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~~~ 264 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEE----IGAD---LTLNRRETSVEERRKAIMDITH 264 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHH-HHHHH----cCCc---EEEeccccCcchHHHHHHHHhC
Confidence 45689999999874 888899999888 6999999998775 44432 1220 111111 00000 11 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+|+-.-.- + ..++...++++++|+++..
T Consensus 265 g~g~Dvvid~~g~------~---~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 265 GRGADFILEATGD------S---RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp TSCEEEEEECSSC------T---THHHHHHHHEEEEEEEEEC
T ss_pred CCCCcEEEECCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 2369999865331 1 4567788999999988776
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0065 Score=45.56 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=35.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNI 48 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~ 48 (175)
..+|..++|..||.|..+..+++.. ..+|+|+|.++.++ +.+
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al-~~A 98 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI-AVA 98 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHH
Confidence 4568899999999999999998875 35799999999998 444
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0056 Score=46.02 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=61.4
Q ss_pred cccCCCcEEEeCCC--ccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---C-CCCC-
Q 030558 5 EWIERRRCIELGSG--TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---F-PIPN- 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG--~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~- 76 (175)
...++++||-.|+| .|..+..+++.. |.+|+++|.+++.+ +.++.. +.. ..+.....+. . ....
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~-~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~ 238 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRA----GAD---YVINASMQDPLAEIRRITES 238 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHh----CCC---EEecCCCccHHHHHHHHhcC
Confidence 34578999999997 577888888877 88999999998775 444321 110 0111110010 0 1111
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.+|+++.+..- + ..++...+.++|+|+++..
T Consensus 239 ~~~d~vi~~~g~------~---~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 239 KGVDAVIDLNNS------E---KTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp SCEEEEEESCCC------H---HHHTTGGGGEEEEEEEEEC
T ss_pred CCceEEEECCCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 479999875332 1 4677888999999988775
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.013 Score=43.74 Aligned_cols=46 Identities=4% Similarity=0.092 Sum_probs=37.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT 54 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~ 54 (175)
.+|..|||.-||+|..+..+.+. +.+.+++|+++..+ +.++.++..
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~-~~~~~r~~~ 296 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYV-AASAFRFLD 296 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHGGGSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHH-HHHHHHHHh
Confidence 46889999999999988887555 99999999999886 555555443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.013 Score=43.91 Aligned_cols=93 Identities=8% Similarity=0.039 Sum_probs=61.3
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-----C-C-CC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----F-P-IP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~-~~ 75 (175)
...++++||-.|+ |.|..+..+++..+.+|+++|.+++.+ +.++.. +. .. .++..+. . . ..
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~-~~~~~~----ga----~~-~~d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKL-RRAKAL----GA----DE-TVNYTHPDWPKEVRRLTG 232 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TC----SE-EEETTSTTHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHhc----CC----CE-EEcCCcccHHHHHHHHhC
Confidence 4557899999998 569999888888889999999998776 444321 11 01 1111110 0 0 11
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+|+.+.. . ..++.+.+.++++|+++..
T Consensus 233 ~~~~d~vi~~~g----~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 233 GKGADKVVDHTG----A------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTCEEEEEESSC----S------SSHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC----H------HHHHHHHHhhccCCEEEEE
Confidence 247999987533 1 3467788899999988776
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.01 Score=44.78 Aligned_cols=44 Identities=27% Similarity=0.309 Sum_probs=35.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHh
Q 030558 9 RRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
..+++|+-||.|.+++.+.+.+ ...|+++|+++.++ +..+.|..
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~-~~~~~N~~ 47 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-EVYKYNFP 47 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHCT
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHH-HHHHHhcc
Confidence 3579999999999999998874 23599999999887 66666653
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0041 Score=46.72 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=61.6
Q ss_pred cccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc--CCCCC-C-CCCCC
Q 030558 5 EWIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS--WGDAF-P-IPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~ 78 (175)
...+|++||=.|+ | .|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+... +.+.. . .....
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----ga~---~v~~~~~~~~~~v~~~~~~~g 227 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAAT-EFVKSV----GAD---IVLPLEEGWAKAVREATGGAG 227 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHH----TCS---EEEESSTTHHHHHHHHTTTSC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CCc---EEecCchhHHHHHHHHhCCCC
Confidence 4557899999997 4 59999999998899999999998775 444432 110 111111 00000 1 11236
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-+..- ..++...++++++|+++..
T Consensus 228 ~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 228 VDMVVDPIGG----------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEEEESCC------------CHHHHHHTEEEEEEEEEC
T ss_pred ceEEEECCch----------hHHHHHHHhhcCCCEEEEE
Confidence 9999875332 2467788999999988876
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.066 Score=40.80 Aligned_cols=98 Identities=18% Similarity=0.103 Sum_probs=66.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.+++||.++.+.|.++..++.. .++.+.-|--. +..++.|.+.+++... .+ .+.+........||+|+..
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~-~~~~~~n~~~~~~~~~--~~--~~~~~~~~~~~~~~~v~~~-- 107 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYIS-ELATRENLRLNGIDES--SV--KFLDSTADYPQQPGVVLIK-- 107 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHH-HHHHHHHHHHTTCCGG--GS--EEEETTSCCCSSCSEEEEE--
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHH-HHHHHHHHHHcCCCcc--ce--EecccccccccCCCEEEEE--
Confidence 4578999999999999888643 44554223323 3667788888877321 11 1112333345679998883
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.......+...+..+...++||+++++.
T Consensus 108 --lpk~~~~l~~~L~~l~~~l~~~~~i~~~ 135 (375)
T 4dcm_A 108 --VPKTLALLEQQLRALRKVVTSDTRIIAG 135 (375)
T ss_dssp --CCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred --cCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 3355667788999999999999988665
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.016 Score=43.69 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=60.6
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C-CC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-IP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~ 75 (175)
...++++||=.|+ |.|..+..+++..|.+|+++|.+++.+ +.++. .+. .. .++..+.. . ..
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~----~ga----~~-~~d~~~~~~~~~~~~~~~ 236 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQ----NGA----HE-VFNHREVNYIDKIKKYVG 236 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTC----SE-EEETTSTTHHHHHHHHHC
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHH-HHHHH----cCC----CE-EEeCCCchHHHHHHHHcC
Confidence 4557899999997 458888888887789999999998775 33322 122 11 11111100 0 11
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
...+|+++.+..- ..+....++++++|+++..-
T Consensus 237 ~~~~D~vi~~~G~----------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 237 EKGIDIIIEMLAN----------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp TTCEEEEEESCHH----------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCcEEEEECCCh----------HHHHHHHHhccCCCEEEEEe
Confidence 2368999875321 35677889999999887763
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0062 Score=46.11 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=60.9
Q ss_pred ccCCCcEEEeC-C-CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCCc
Q 030558 6 WIERRRCIELG-S-GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlG-c-G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~f 79 (175)
..+|++||=.| + |.|..+..+++..|.+|+++|.+++.+ +.++. .+.. ..+.....+ .. ......+
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~-~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKS-AFLKS----LGCD---RPINYKTEPVGTVLKQEYPEGV 232 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCS---EEEETTTSCHHHHHHHHCTTCE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHH----cCCc---EEEecCChhHHHHHHHhcCCCC
Confidence 45689999999 4 469999999888889999999998765 44432 1220 011111000 00 0112468
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+-+..- ..++.+.++++++|+++..
T Consensus 233 D~vid~~g~----------~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 233 DVVYESVGG----------AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp EEEEECSCT----------HHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCH----------HHHHHHHHHHhcCCEEEEE
Confidence 999875331 4677889999999988776
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.014 Score=43.38 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=59.8
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C-CC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-IP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~ 75 (175)
...++++||-.|+ |.|.....+++..|.+|+++|.+++.+ +.++.. +. .. .++..+.. . ..
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~-~~~~~~----g~----~~-~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA-QSALKA----GA----WQ-VINYREEDLVERLKEITG 206 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHHH----TC----SE-EEETTTSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHc----CC----CE-EEECCCccHHHHHHHHhC
Confidence 4557899999993 468888887777788999999998765 444321 11 00 11111100 0 11
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+++.+.. . ..++...++++++|+++..
T Consensus 207 ~~~~D~vi~~~g-------~---~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 207 GKKVRVVYDSVG-------R---DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TCCEEEEEECSC-------G---GGHHHHHHTEEEEEEEEEC
T ss_pred CCCceEEEECCc-------h---HHHHHHHHHhcCCCEEEEE
Confidence 236899987532 1 4567888999999988776
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0061 Score=45.80 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=61.4
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-------CC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-------IP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 75 (175)
...+|++||-.|+ |.|..+..+++..|.+|+++|.+++.+ +.++. .+. . ..++..+... ..
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~-~~~~~----~g~----~-~~~d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE-ELFRS----IGG----E-VFIDFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH-HHHHH----TTC----C-EEEETTTCSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH-HHHHH----cCC----c-eEEecCccHhHHHHHHHHh
Confidence 3457899999998 468888888887788999999988765 44332 122 1 1112111100 01
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+|+++.+... . ..++.+.+.++++|+++..
T Consensus 236 ~~~~D~vi~~~g~------~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 236 DGGAHGVINVSVS------E---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp TSCEEEEEECSSC------H---HHHHHHTTSEEEEEEEEEC
T ss_pred CCCCCEEEECCCc------H---HHHHHHHHHHhcCCEEEEE
Confidence 1268998876432 1 5678889999999988776
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.097 Score=39.26 Aligned_cols=106 Identities=10% Similarity=0.144 Sum_probs=64.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHh-CCCcEEEEeCChHHHHHHHHHHHhhCC--------------------CCCCcceeec
Q 030558 8 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNG--------------------ITPALPHIKH 66 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~~D~s~~~l~~~~~~~~~~~~--------------------~~~~~~~~~~ 66 (175)
+.+.|+.||||.......+... .+..++=+|. |.++ +.-++.+...+ ...+...+..
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi-~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESV-ELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHH-HHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHH-HHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 3467999999999999888664 2445666666 4454 33333332220 0123444444
Q ss_pred cCCCC------C-CC-CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 67 SWGDA------F-PI-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 67 ~~~~~------~-~~-~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..+. + .. ..+...++++-.+++|.. .+...++++.+.+.. |+|.+++.
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~-~~~~~v~~ 231 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMH-NNESQLLINTIMSKF-SHGLWISY 231 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhC-CCcEEEEE
Confidence 44331 0 11 234678899888886665 667888899888876 67766544
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0081 Score=44.71 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=57.8
Q ss_pred cCCC-cEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CC-CCCCCCCcc
Q 030558 7 IERR-RCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DA-FPIPNPDWD 80 (175)
Q Consensus 7 ~~~~-~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~fD 80 (175)
.++. +||=.|+ | .|..+..+++..|.+|++++.+++.+ +.++. .+.. ..+..... +. .....+.+|
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~-~~~~~----lGa~---~~i~~~~~~~~~~~~~~~~~~d 218 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLRV----LGAK---EVLAREDVMAERIRPLDKQRWA 218 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHHHH----TTCS---EEEECC---------CCSCCEE
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHH----cCCc---EEEecCCcHHHHHHHhcCCccc
Confidence 3454 8999997 4 59999999998899999999988665 44432 1220 01111100 11 112234689
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-+-.- ..++...++++++|+++..
T Consensus 219 ~vid~~g~----------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 219 AAVDPVGG----------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEECSTT----------TTHHHHHHTEEEEEEEEEC
T ss_pred EEEECCcH----------HHHHHHHHhhccCCEEEEE
Confidence 98865321 2466788899999988776
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.023 Score=42.82 Aligned_cols=95 Identities=13% Similarity=-0.020 Sum_probs=59.7
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~ 77 (175)
...+|++||=.|+ |.|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.....+ .. . ....
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKL-QMAEKL----GAA---AGFNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH----TCS---EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHc----CCc---EEEecCChHHHHHHHHHhcCC
Confidence 4557899999983 468888888887789999999998776 444321 110 011111100 00 0 1123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+++-+..- ..++...++++++|+++..
T Consensus 231 ~~d~vi~~~G~----------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 231 GVNLILDCIGG----------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp CEEEEEESSCG----------GGHHHHHHHEEEEEEEEEC
T ss_pred CceEEEECCCc----------hHHHHHHHhccCCCEEEEE
Confidence 69999876432 2356678899999988776
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0029 Score=46.62 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=58.9
Q ss_pred ccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc----CCCCCCCCCCCc
Q 030558 6 WIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS----WGDAFPIPNPDW 79 (175)
Q Consensus 6 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~f 79 (175)
..+|++||=+|+ | .|..+..+++..|.+|+++|.+++.+ +.++. .+.. ..+... +.+.. +.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~----~ga~---~~~~~~~~~~~~~~~----~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL-ALPLA----LGAE---EAATYAEVPERAKAW----GGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS-HHHHH----TTCS---EEEEGGGHHHHHHHT----TSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHh----cCCC---EEEECCcchhHHHHh----cCc
Confidence 456899999997 4 58888888888889999999988765 44332 1220 111110 10111 468
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+- ..- ..++...++++++|+++..
T Consensus 191 d~vid-~g~----------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 191 DLVLE-VRG----------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EEEEE-CSC----------TTHHHHHTTEEEEEEEEEC
T ss_pred eEEEE-CCH----------HHHHHHHHhhccCCEEEEE
Confidence 99886 321 2467788999999988775
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.027 Score=41.98 Aligned_cols=93 Identities=10% Similarity=0.103 Sum_probs=60.2
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------C-CC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------P-IP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~ 75 (175)
...++++||=.|+ |.|.....+++..|.+|+++|.+++.+ +.++.. +. .. .++..+.. . ..
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~-~~~~~~----g~----~~-~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKA-ETARKL----GC----HH-TINYSTQDFAEVVREITG 211 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TC----SE-EEETTTSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CC----CE-EEECCCHHHHHHHHHHhC
Confidence 4557899999995 568888888887789999999998765 444321 11 00 11111100 0 01
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+++.+..- ..++...++++++|+++..
T Consensus 212 ~~~~d~vi~~~g~----------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 212 GKGVDVVYDSIGK----------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TCCEEEEEECSCT----------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEECCcH----------HHHHHHHHhhccCCEEEEE
Confidence 2368999875331 3467788999999988776
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0085 Score=45.01 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCcEEEe-CCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCCCcc
Q 030558 8 ERRRCIEL-GSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDl-GcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fD 80 (175)
+|++||=. |+| .|..+..+++..|.+|+++|.+++.+ +.++.. +. ..+ ++..++. ....+.+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~l----Ga----~~v-i~~~~~~~~~~~~~~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETI-EWTKKM----GA----DIV-LNHKESLLNQFKTQGIELVD 219 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHH-HHHHHH----TC----SEE-ECTTSCHHHHHHHHTCCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhc----CC----cEE-EECCccHHHHHHHhCCCCcc
Confidence 78899999 566 48889999998899999999988775 444432 11 000 1111100 11234699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-... .+ ..++...++++++|+++..
T Consensus 220 vv~d~~g------~~---~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 220 YVFCTFN------TD---MYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEESSC------HH---HHHHHHHHHEEEEEEEEES
T ss_pred EEEECCC------ch---HHHHHHHHHhccCCEEEEE
Confidence 9887422 11 5678889999999998665
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.031 Score=43.61 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=61.5
Q ss_pred cccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-----------
Q 030558 5 EWIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----------- 71 (175)
Q Consensus 5 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 71 (175)
...+|.+||=+|+ | .|..+..+++..|.+|++++.+++.+ +.++.. +.. ..+.....+.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~-~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA-EICRAM----GAE---AIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHH----TCC---EEEETTTTTCCSEEETTEECH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHH-HHHHhh----CCc---EEEecCcCcccccccccccch
Confidence 4567899999997 5 59999999998899999999888765 444321 110 0111100000
Q ss_pred ---------C-C-CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 72 ---------F-P-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 72 ---------~-~-~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. . .....+|+|+-+-. . ..++...++++++|+++..
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G--------~--~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG--------R--ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC--------H--HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC--------c--hhHHHHHHHhhCCcEEEEE
Confidence 0 0 01247899886422 1 4677888999999988876
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.026 Score=43.93 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=61.8
Q ss_pred ccccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----------
Q 030558 4 REWIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---------- 71 (175)
Q Consensus 4 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (175)
....+|++||=.|+ | .|..+..+++..|.+|++++.+++.+ +.++. .+....+.....++.+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~-~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKE-AAVRA----LGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh----cCCCEEEecccccccccccccccccch
Confidence 35567899999997 5 58899999998899999999888765 44332 12211011000010000
Q ss_pred --------C-CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 72 --------F-PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 72 --------~-~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. ......+|+|+-+..- ..++...++++++|+++..
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~G~----------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHTGR----------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECSCH----------HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHhCCCceEEEECCCc----------hHHHHHHHHHhcCCEEEEE
Confidence 0 0012468999875331 3567788899999988876
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0033 Score=47.49 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=57.6
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+|.+||=+|+|. |..+..+++..|.+|+++|.+++.+ +.+++ ..+.. ..+.....+......+.+|+|+-.-
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~-~~~~~---~lGa~---~vi~~~~~~~~~~~~~g~D~vid~~ 252 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR-EEALQ---DLGAD---DYVIGSDQAKMSELADSLDYVIDTV 252 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHH-HHHHT---TSCCS---CEEETTCHHHHHHSTTTEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHH---HcCCc---eeeccccHHHHHHhcCCCCEEEECC
Confidence 788999999875 8888888887788999999988665 33321 11220 1111110000000113689998643
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.- . ..++...++++|+|+++..
T Consensus 253 g~---~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 253 PV---H------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp CS---C------CCSHHHHTTEEEEEEEEEC
T ss_pred CC---h------HHHHHHHHHhccCCEEEEe
Confidence 21 1 2345677899999988775
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.024 Score=43.26 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=34.2
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~ 52 (175)
-+++||-||.|.+++-+.+.+...|.++|+++..+ +..+.|.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~-~t~~~N~ 44 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAI-NTHAINF 44 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHH-HHHHHHC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHH-HHHHHhC
Confidence 47999999999999999887433478999999886 6666654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.028 Score=41.90 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=36.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCCh---HHHHHHHHHHHh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYND---QEIEDNIAYNST 53 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~---~~l~~~~~~~~~ 53 (175)
.+|..|||.-||+|..+..+.+. +.+.+++|+++ ..+ +.+..++.
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~-~~~~~Rl~ 288 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYY-QKQLTFLQ 288 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHH-HHHHHHC-
T ss_pred CCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHH-HHHHHHHH
Confidence 36889999999999999888666 89999999999 776 45444443
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.098 Score=42.88 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=70.8
Q ss_pred CcEEEeCCCccHHHHHHHHhC-------------CCcEEEEeC---ChHHHHHHHHH----------HHhhCCC-CCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAM-------------NLDITTSDY---NDQEIEDNIAY----------NSTTNGI-TPALP 62 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-------------~~~v~~~D~---s~~~l~~~~~~----------~~~~~~~-~~~~~ 62 (175)
-+|||+|-|+|...+...+.. ..++++++. +.+.+...++. -...... ...+.
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 479999999999997654432 135899999 77666323221 1111111 00110
Q ss_pred e---------eeccCCCC---CC-C---CCCCccEEEeCCcccCcccchHH--HHHHHHHHhhcCCCCceeeccccCCCC
Q 030558 63 H---------IKHSWGDA---FP-I---PNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQG 124 (175)
Q Consensus 63 ~---------~~~~~~~~---~~-~---~~~~fD~i~~~~~l~~~~~~~~~--~~~l~~l~~~l~pgG~~~~~~~~~~~~ 124 (175)
. +.+..+|. ++ . ....||+++.-. + -....+++ ..+++.+.++++|||++... .
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f-~p~~np~~w~~~~~~~l~~~~~~g~~~~t~--~---- 219 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-F-APAKNPDMWTQNLFNAMARLARPGGTLATF--T---- 219 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-S-CGGGCGGGSCHHHHHHHHHHEEEEEEEEES--C----
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-C-CCcCChhhhhHHHHHHHHHHhCCCCEEEec--c----
Confidence 1 11112221 11 1 135799988732 1 11111111 38899999999999865541 1
Q ss_pred CCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 125 EGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
....+.+.+.++||.+....
T Consensus 220 ----------------------~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 220 ----------------------SAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp ----------------------CCHHHHHHHHHHTCEEEEEE
T ss_pred ----------------------CcHHHHHHHHhCCeEEEecc
Confidence 02566778888999877653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.013 Score=44.27 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=57.9
Q ss_pred CcEEEeCCCc-cHHH-HHHH-HhCCCc-EEEEeCChH---HHHHHHHHHHhhCCCCCCcceeecc---CCCCCCCCCCCc
Q 030558 10 RRCIELGSGT-GALA-IFLR-KAMNLD-ITTSDYNDQ---EIEDNIAYNSTTNGITPALPHIKHS---WGDAFPIPNPDW 79 (175)
Q Consensus 10 ~~vLDlGcG~-G~~~-~~l~-~~~~~~-v~~~D~s~~---~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~f 79 (175)
.+||=+|+|. |..+ ..++ +..|.+ |+++|.+++ .+ +.++. .+. ..+... +.+.... .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~-~~~~~----lGa----~~v~~~~~~~~~i~~~-~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTI-DIIEE----LDA----TYVDSRQTPVEDVPDV-YEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHH-HHHHH----TTC----EEEETTTSCGGGHHHH-SCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHH-HHHHH----cCC----cccCCCccCHHHHHHh-CCCC
Confidence 8999999875 8888 8898 877887 999999886 54 44432 122 111000 1010011 2378
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+-...- + ..++...++++++|+++..
T Consensus 244 Dvvid~~g~------~---~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 244 DFIYEATGF------P---KHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEEECSCC------H---HHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCC------h---HHHHHHHHHHhcCCEEEEE
Confidence 999864321 1 4678889999999988776
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.062 Score=40.25 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=60.1
Q ss_pred ccccCCCcEEEeC-CC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----C-CCC
Q 030558 4 REWIERRRCIELG-SG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----P-IPN 76 (175)
Q Consensus 4 ~~~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~ 76 (175)
....+|++||=+| +| .|..+..+++..|.+|+++ .+++.+ +.++.. +. ..+. ...+.. . ...
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~-~~~~~l----Ga----~~i~-~~~~~~~~~~~~~~~ 214 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDL-EYVRDL----GA----TPID-ASREPEDYAAEHTAG 214 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHH-HHHHHH----TS----EEEE-TTSCHHHHHHHHHTT
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHH-HHHHHc----CC----CEec-cCCCHHHHHHHHhcC
Confidence 3455789999999 44 5999999999889999999 777665 443321 22 1111 100000 0 112
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+|+|+-+-. . ..++...++++++|+++..
T Consensus 215 ~g~D~vid~~g-------~---~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 215 QGFDLVYDTLG-------G---PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp SCEEEEEESSC-------T---HHHHHHHHHEEEEEEEEES
T ss_pred CCceEEEECCC-------c---HHHHHHHHHHhcCCeEEEE
Confidence 46999886422 1 4677888999999988876
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0069 Score=45.93 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
+|.+||=+|+|. |..+..+++..|.+|+++|.+++.+ +.+.+. .+.. ..+.....+......+.+|+|+-.-
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~-~~~~~~---lGa~---~v~~~~~~~~~~~~~~~~D~vid~~ 259 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKK-EEALKN---FGAD---SFLVSRDQEQMQAAAGTLDGIIDTV 259 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGH-HHHHHT---SCCS---EEEETTCHHHHHHTTTCEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHh---cCCc---eEEeccCHHHHHHhhCCCCEEEECC
Confidence 788999999875 8888888888889999999998765 333211 1220 1111100000000113689998753
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.. . ..++...+.++++|+++..
T Consensus 260 g~---~------~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 260 SA---V------HPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp SS---C------CCSHHHHHHEEEEEEEEEC
T ss_pred Cc---H------HHHHHHHHHHhcCCEEEEE
Confidence 32 1 1245577889999988775
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.039 Score=40.87 Aligned_cols=94 Identities=16% Similarity=0.037 Sum_probs=57.3
Q ss_pred cccCCCcEEEeC-CC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 5 EWIERRRCIELG-SG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...+|.+||=+| +| .|..+..+++..|.+|++++. +... +.+++. +.. ..+.....+........+|+|
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-~~~~-~~~~~l----Ga~---~~i~~~~~~~~~~~~~g~D~v 219 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNH-AFLKAL----GAE---QCINYHEEDFLLAISTPVDAV 219 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-HHHH-HHHHHH----TCS---EEEETTTSCHHHHCCSCEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-cchH-HHHHHc----CCC---EEEeCCCcchhhhhccCCCEE
Confidence 455789999996 66 499999999988999999974 4333 333321 220 111111111011111468998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.-. . ..++...++++++|+++..
T Consensus 220 ~d~~g------~----~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 220 IDLVG------G----DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EESSC------H----HHHHHHGGGEEEEEEEEEC
T ss_pred EECCC------c----HHHHHHHHhccCCCEEEEe
Confidence 86422 1 2337788999999988876
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.058 Score=41.27 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=27.7
Q ss_pred CcEEEeCCCccHHHHHHHHhC--------CCcEEEEeCChHHH
Q 030558 10 RRCIELGSGTGALAIFLRKAM--------NLDITTSDYNDQEI 44 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~--------~~~v~~~D~s~~~l 44 (175)
-+|+|+|.|+|.++..+.+.. ..+++.+|+|+...
T Consensus 82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 469999999999997765432 23799999999763
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.035 Score=45.63 Aligned_cols=127 Identities=14% Similarity=0.171 Sum_probs=70.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-------------CCcEEEEeC---ChHHHHHHHHH---------HHhhCCCCC--Cc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-------------NLDITTSDY---NDQEIEDNIAY---------NSTTNGITP--AL 61 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-------------~~~v~~~D~---s~~~l~~~~~~---------~~~~~~~~~--~~ 61 (175)
.-+|+|+|-|+|...+.+.+.. ..+++.++. +...+.+..+. .+....... .+
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 3589999999999998765532 146899999 44444322211 111111100 01
Q ss_pred c---------eeeccCCCC---CC-CC---CCCccEEEeCCcccCcccc-hH--HHHHHHHHHhhcCCCCceeeccccCC
Q 030558 62 P---------HIKHSWGDA---FP-IP---NPDWDLILASDILLYVKQY-SN--LIKSLSVLLKSYKPKDSQVGHLTKNE 122 (175)
Q Consensus 62 ~---------~~~~~~~~~---~~-~~---~~~fD~i~~~~~l~~~~~~-~~--~~~~l~~l~~~l~pgG~~~~~~~~~~ 122 (175)
. .+.+..+|. ++ .. ...+|.++.-..- +.. ++ -..++..+.++++|||++... .
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~---p~~np~~w~~~~~~~l~~~~~~g~~~~t~--~-- 211 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA---PAKNPDMWNEQLFNAMARMTRPGGTFSTF--T-- 211 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC---C--CCTTCSHHHHHHHHHHEEEEEEEEES--C--
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC---CCCChhhhhHHHHHHHHHHhCCCCEEEec--c--
Confidence 0 111222332 12 11 4679998873211 111 11 138899999999999855441 0
Q ss_pred CCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEec
Q 030558 123 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (175)
......+.+.++||.+..+.
T Consensus 212 ------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ------------------------CcHHHHHHHHhCCeEEEecc
Confidence 02456777889999887754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.19 Score=37.40 Aligned_cols=96 Identities=20% Similarity=0.142 Sum_probs=59.6
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----C-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~ 77 (175)
...+|.+||=.|+|. |..+..+++..+.. ++++|.+++.+ +.+++. +.. ..+...-.+.. . ....
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~-~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKL-ALAKSF----GAM---QTFNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT----TCS---EEEETTTSCHHHHHHHHGGGC
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHH-HHHHHc----CCe---EEEeCCCCCHHHHHHhhcccC
Confidence 345788999999975 77888888887766 68999999765 444321 220 11111110000 0 0123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-... .+ ..++...++++++|++++.
T Consensus 229 g~d~v~d~~G------~~---~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 229 FNQLILETAG------VP---QTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SSEEEEECSC------SH---HHHHHHHHHCCTTCEEEEC
T ss_pred Cccccccccc------cc---chhhhhhheecCCeEEEEE
Confidence 5788776432 12 6778888999999988876
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.31 Score=36.10 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=65.0
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCC--CCCCcceeeccCCCCC-------CCCCCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAF-------PIPNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~fD 80 (175)
+.|++||||-=.....+....+..|+=+|. |.++ +..++.+...+ .......+..+..+.+ .+..+..-
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi-~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVL-AYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHH-HHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHH-HHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence 569999999766555553211457888884 6565 45444444322 1223344444443311 11223445
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++++..+++|... ++...+++.+...+.||+.+++...
T Consensus 182 ~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 182 AWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp EEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEec
Confidence 7778888866664 5788999999998889987777643
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.22 Score=37.29 Aligned_cols=90 Identities=12% Similarity=0.045 Sum_probs=53.0
Q ss_pred CcEEEe-CCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CC-CCCCccEE
Q 030558 10 RRCIEL-GSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PI-PNPDWDLI 82 (175)
Q Consensus 10 ~~vLDl-GcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~fD~i 82 (175)
++||=. |+| .|..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+.....+.. .. ....+|+|
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~~~~g~D~v 237 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI-ALLKDI----GAA---HVLNEKAPDFEATLREVMKAEQPRIF 237 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH-HHHHHH----TCS---EEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHc----CCC---EEEECCcHHHHHHHHHHhcCCCCcEE
Confidence 455533 555 47777888887789999999998775 444321 110 11111100000 00 01368999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-+..- ..++...++++++|+++..
T Consensus 238 id~~g~----------~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 238 LDAVTG----------PLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp EESSCH----------HHHHHHHHHSCTTCEEEEC
T ss_pred EECCCC----------hhHHHHHhhhcCCCEEEEE
Confidence 875331 2346788999999988876
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.044 Score=41.00 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=56.9
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHH-hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRK-AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~-~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~ 77 (175)
...+|.+||=+|+|. |..+..+++ ..+.+|+++|.+++-+ +.++.. +.. ..+.....+ .. . ....
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~-~~~~~~----Ga~---~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKL-NLAKKI----GAD---VTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHH-HHHHHT----TCS---EEEEC-CCCHHHHHHHHTTSS
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHh-hhhhhc----CCe---EEEeCCCCCHHHHhhhhcCCC
Confidence 345788999999986 556666555 4588999999999765 333321 220 111111111 00 0 1122
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|.++.... .. ..+....+.++++|++++.
T Consensus 232 g~d~~~~~~~------~~---~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCAV------AR---IAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECCS------CH---HHHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEecc------Cc---chhheeheeecCCceEEEE
Confidence 5666665322 12 6778889999999988876
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.072 Score=40.37 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=57.3
Q ss_pred ccCCCcEEEeC-CC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCcc
Q 030558 6 WIERRRCIELG-SG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD 80 (175)
..+|++||=.| +| .|..+..+++..|.+|++++ +++.. +.++. .+.. ..+.....+ ... ....+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~-~~~~~----lGa~---~v~~~~~~~~~~~~~-~~~g~D 250 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDAS-ELVRK----LGAD---DVIDYKSGSVEEQLK-SLKPFD 250 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGH-HHHHH----TTCS---EEEETTSSCHHHHHH-TSCCBS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHH-HHHHH----cCCC---EEEECCchHHHHHHh-hcCCCC
Confidence 45789999999 55 59999999888889999998 66554 33322 1220 111111000 000 114689
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-+..- .. ..++...++++++|+++..
T Consensus 251 ~vid~~g~-----~~---~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 251 FILDNVGG-----ST---ETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EEEESSCT-----TH---HHHGGGGBCSSSCCEEEES
T ss_pred EEEECCCC-----hh---hhhHHHHHhhcCCcEEEEe
Confidence 99865332 11 3456677889999988776
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.03 Score=42.12 Aligned_cols=93 Identities=5% Similarity=-0.012 Sum_probs=59.4
Q ss_pred ccCC--CcEEEeCC--CccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------CC
Q 030558 6 WIER--RRCIELGS--GTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PI 74 (175)
Q Consensus 6 ~~~~--~~vLDlGc--G~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (175)
..+| ++||=.|+ |.|..+..+++..|. +|+++|.+++.+ +.+++. .+. . ..++..+.. ..
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~-~~~~~~---~g~----~-~~~d~~~~~~~~~~~~~ 226 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKC-ILLTSE---LGF----D-AAINYKKDNVAEQLRES 226 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT---SCC----S-EEEETTTSCHHHHHHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHH---cCC----c-eEEecCchHHHHHHHHh
Confidence 4457 89999997 458888888887788 999999998665 333321 122 1 111111100 00
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..+.+|+++.+.. . ..++...++++++|+++..
T Consensus 227 ~~~~~d~vi~~~G-------~---~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 227 CPAGVDVYFDNVG-------G---NISDTVISQMNENSHIILC 259 (357)
T ss_dssp CTTCEEEEEESCC-------H---HHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCCEEEECCC-------H---HHHHHHHHHhccCcEEEEE
Confidence 1126899887533 1 5678889999999988776
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.17 Score=39.27 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.1
Q ss_pred CCcEEEeCCCccHHHHHHHHhC------CCcEEEEeCChHHH
Q 030558 9 RRRCIELGSGTGALAIFLRKAM------NLDITTSDYNDQEI 44 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~------~~~v~~~D~s~~~l 44 (175)
.-+|+|+|.|+|.++..+.+.. ..+++.+|+|+..-
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr 179 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELR 179 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHH
Confidence 3589999999999997665432 23699999999763
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.067 Score=41.20 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=32.9
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.++.+|+=+|+|. |..+..+++..|.+|+++|.++..+
T Consensus 188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l 226 (405)
T 4dio_A 188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAK 226 (405)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHH
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 4678999999996 8888888888899999999999765
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.2 Score=37.64 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=52.8
Q ss_pred cccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEE-eCChHHH--HHHHHHHHhhCCCCCCcceeecc--CCCCC-CCCC
Q 030558 5 EWIERRRCIELGS-G-TGALAIFLRKAMNLDITTS-DYNDQEI--EDNIAYNSTTNGITPALPHIKHS--WGDAF-PIPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~-D~s~~~l--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~ 76 (175)
...+|.+||=+|+ | .|..+..+|+..|.+++++ +.++..- .+.++ ..+.. ..+... +.+.. ....
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~~~ 236 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE---HVITEEELRRPEMKNFFK 236 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS---EEEEHHHHHSGGGGGTTS
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc---EEEecCcchHHHHHHHHh
Confidence 3457899999997 4 5999999999878876555 4443221 02222 12221 111110 00111 1111
Q ss_pred --CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 --PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 --~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.+|+|+-.-. . ....+..++++++|+++..
T Consensus 237 ~~~~~Dvvid~~g------~----~~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 237 DMPQPRLALNCVG------G----KSSTELLRQLARGGTMVTY 269 (357)
T ss_dssp SSCCCSEEEESSC------H----HHHHHHHTTSCTTCEEEEC
T ss_pred CCCCceEEEECCC------c----HHHHHHHHhhCCCCEEEEE
Confidence 14899886422 1 1224578999999988775
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.71 Score=33.24 Aligned_cols=104 Identities=13% Similarity=-0.028 Sum_probs=57.9
Q ss_pred CCcEEEeCCCccHHHHHHHHh--------CCCcEEEEeC-----ChHH------------------HHHHHHHHHh---h
Q 030558 9 RRRCIELGSGTGALAIFLRKA--------MNLDITTSDY-----NDQE------------------IEDNIAYNST---T 54 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~--------~~~~v~~~D~-----s~~~------------------l~~~~~~~~~---~ 54 (175)
.+.|+|+|+..|..+..+++. ...+|+++|. .+.. ..+...+.+. .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 457999999999988876652 1367999993 2210 0011111111 0
Q ss_pred CCCCCC-cceeeccCCC---CCC-----CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 55 NGITPA-LPHIKHSWGD---AFP-----IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 55 ~~~~~~-~~~~~~~~~~---~~~-----~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...... -..+.+..++ .++ .+..+||++..-.=. .+.-...++.+...|+|||.+++-
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-----Y~~t~~~le~~~p~l~~GGvIv~D 216 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-----YEPTKAVLEAIRPYLTKGSIVAFD 216 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-----HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-----cchHHHHHHHHHHHhCCCcEEEEc
Confidence 001011 1334444443 221 234479998874322 223347788899999999988874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.026 Score=43.05 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=32.5
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.++++|+=+|+|. |..+..+++..|.+|+++|.++..+
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l 220 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVA 220 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGH
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4678999999996 8888777777799999999999776
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.23 Score=36.54 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCc---EEEEeCChHHHHHHHHHH
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLD---ITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~---v~~~D~s~~~l~~~~~~~ 51 (175)
.+-+++||-||.|.+++-+.+. |.+ |.++|+++..+ +..+.|
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~-~ty~~N 59 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSI-TVGMVR 59 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHH-HHHHHH
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHH-HHHHHh
Confidence 3568999999999999999776 554 59999999886 555555
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.21 Score=37.41 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=33.2
Q ss_pred CcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHH
Q 030558 10 RRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~ 52 (175)
-+++|+-||.|.+++-+.+.+- ..|.++|+++... +..+.|.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~-~ty~~N~ 47 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVAN-SVYKHNF 47 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHH-HHHHHHC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHH-HHHHHhC
Confidence 3799999999999999977632 3489999999886 6666554
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.046 Score=41.38 Aligned_cols=104 Identities=11% Similarity=0.128 Sum_probs=58.3
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|+=+|+|. |.....+++..|.+|+++|.+++.+ +.++...... . ..+.... +.+...-..+|+|+..
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~-~~~~~~~~~~-~----~~~~~~~-~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERL-SYLETLFGSR-V----ELLYSNS-AEIETAVAEADLLIGA 237 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHGGG-S----EEEECCH-HHHHHHHHTCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHhhCce-e----EeeeCCH-HHHHHHHcCCCEEEEC
Confidence 4568999999974 7777777777788999999999776 4443322211 0 0010000 0000001258999875
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
-..-... .+. -+.++..+.++|+|+++...+.
T Consensus 238 ~~~~~~~-~~~--li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 238 VLVPGRR-API--LVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp CCCTTSS-CCC--CBCHHHHTTSCTTCEEEETTCT
T ss_pred CCcCCCC-CCe--ecCHHHHhhCCCCCEEEEEecC
Confidence 4431100 010 1134567788999977776543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=92.23 E-value=0.12 Score=38.86 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=29.9
Q ss_pred cccCC-CcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChH
Q 030558 5 EWIER-RRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 5 ~~~~~-~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
...+| .+||=.|+ | .|..+..+|+..|.+++++..+++
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 203 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 34567 89999987 5 599999999988999888875553
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.58 Score=34.63 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=51.1
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEEe
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILA 84 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~~ 84 (175)
.+|.=||+|. | .++..+++. |. +|+++|.+++.+ +.+.. .+. ..... ..... .-...|+|+.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~-~~a~~----~G~---~~~~~----~~~~~~~~~~aDvVil 100 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESI-SKAVD----LGI---IDEGT----TSIAKVEDFSPDFVML 100 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHH-HHHHH----TTS---CSEEE----SCTTGGGGGCCSEEEE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHH-HHHHH----CCC---cchhc----CCHHHHhhccCCEEEE
Confidence 5788899885 3 445556554 66 899999999776 33221 122 00111 11111 1235798887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
+-.. .....+++++...++|+..++
T Consensus 101 avp~------~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 101 SSPV------RTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CSCG------GGHHHHHHHHHHHSCTTCEEE
T ss_pred eCCH------HHHHHHHHHHhhccCCCcEEE
Confidence 5332 234578889988899886443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.12 Score=39.22 Aligned_cols=93 Identities=8% Similarity=0.026 Sum_probs=58.0
Q ss_pred cCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCCcc
Q 030558 7 IERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPDWD 80 (175)
Q Consensus 7 ~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~fD 80 (175)
.+|.+||=+|+ | .|..+..+++..|.+|+++. +++.+ +.++. .+.. ..+.....+ .. ....+.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~-~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNF-DLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGH-HHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHH-HHHHH----cCCc---EEEECCCchHHHHHHHHccCCcc
Confidence 57889999998 4 69999999998899999885 77664 44332 1220 111111111 00 11123599
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhc-CCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l-~pgG~~~~~ 117 (175)
+|+-.-. .+ ..++...+.+ +++|+++..
T Consensus 234 ~v~d~~g------~~---~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 234 YALDCIT------NV---ESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEEESSC------SH---HHHHHHHHHSCTTCEEEEES
T ss_pred EEEECCC------ch---HHHHHHHHHhhcCCCEEEEE
Confidence 9886422 12 5677788888 699988776
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.49 E-value=0.25 Score=37.16 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=59.9
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCC-CCCCCCccE
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAF-PIPNPDWDL 81 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~fD~ 81 (175)
...+|.+||=+|+|. |..+..+++..|.+|+++|.+++.+ +.++.. +.. ..+..... +.. ... +.+|+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~-~~~~~l----Ga~---~v~~~~~~~~~~~~~~-~~~D~ 246 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-EDAMKM----GAD---HYIATLEEGDWGEKYF-DTFDL 246 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHHH----TCS---EEEEGGGTSCHHHHSC-SCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHc----CCC---EEEcCcCchHHHHHhh-cCCCE
Confidence 345789999999875 8888888887788999999988775 444431 110 11111100 100 011 47999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+-...-. . + ..++...++++++|+++..
T Consensus 247 vid~~g~~---~-~---~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 247 IVVCASSL---T-D---IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEECCSCS---T-T---CCTTTGGGGEEEEEEEEEC
T ss_pred EEECCCCC---c-H---HHHHHHHHHhcCCCEEEEe
Confidence 98653210 0 1 2345577889999988775
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.84 Score=35.50 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCCccccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCCh
Q 030558 1 MHHREWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYND 41 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~ 41 (175)
|+....+++++|+=+|.|. |.-+..++...|.+|+++|.++
T Consensus 1 m~~~~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 1 MKTITTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp ---CCTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcchhhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 3344456789999999975 5544445555599999999965
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=90.54 E-value=0.12 Score=37.96 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCCCCccEEEeCCcccCccc-----------------chHHHHHHHHHHhhcCCCCceeeccc
Q 030558 74 IPNPDWDLILASDILLYVKQ-----------------YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~-----------------~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.++++||+|+++...+.... ...+..+++++.++|+|||.+++.+.
T Consensus 36 l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 36 FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 34679999999877531110 11245688899999999999988644
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=0.52 Score=36.58 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=31.8
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
.+.|++|+=+|+|. |......++.+|.+|+++|.++..
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~r 255 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC 255 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 45789999999996 777777777779999999999854
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=1.1 Score=37.26 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=78.0
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh-----------hCCCCCCcceeeccCCCCCCCCC
Q 030558 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST-----------TNGITPALPHIKHSWGDAFPIPN 76 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
++|-=||+|+ +..+..++.. |..|+..|++++.++ .....+. ..........+.. ..... .-
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~a-G~~V~l~D~~~~~l~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARV-GISVVAVESDPKQLD-AAKKIITFTLEKEASRAHQNGQASAKPKLRF--SSSTK-EL 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSHHHHH-HHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE--ESCGG-GG
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCchhcccchHhhhh-hHHHHHHHHHHHHHHhccccchhhhhhhhcc--cCcHH-HH
Confidence 5788889987 3334445554 899999999998763 2221111 1111001111110 11111 11
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC-------------CCCCCCCCce-Eee--ee
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAF-LMS--WR 140 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~--~~ 140 (175)
...|+|+=+ +. ++.+--.++++++-.+++|+..+.-.+....-.. .+++.+.+.. +.. ..
T Consensus 392 ~~aDlVIEA-V~---E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g 467 (742)
T 3zwc_A 392 STVDLVVEA-VF---EDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPS 467 (742)
T ss_dssp GSCSEEEEC-CC---SCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEEC
T ss_pred hhCCEEEEe-cc---ccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecC
Confidence 246888865 33 5555667999999999999975555433332111 1222222211 111 11
Q ss_pred ccCCCcchhHHHHHHHHcCCeeEEecceE
Q 030558 141 RRIGKEDETIFFTSCENAGLEVKHLGSRV 169 (175)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 169 (175)
.....+......+++++.|-....+.+..
T Consensus 468 ~~Ts~e~~~~~~~~~~~lgK~pV~vkd~p 496 (742)
T 3zwc_A 468 RYSSPTTIATVMSLSKKIGKIGVVVGNCY 496 (742)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEECCCST
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcccCCCC
Confidence 22223334666777888887766665543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=2 Score=31.96 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=57.4
Q ss_pred CCcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHH---HHHHH----hhCCCCCCcce-e---eccCCCCCCCC
Q 030558 9 RRRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDN---IAYNS----TTNGITPALPH-I---KHSWGDAFPIP 75 (175)
Q Consensus 9 ~~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~---~~~~~----~~~~~~~~~~~-~---~~~~~~~~~~~ 75 (175)
..+|.=||+|+ |. .+..++.. |.+|+..|++++.+... +++.. ........... . .+....++...
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG-GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 35788899987 33 44455555 99999999999876322 11111 11111111000 0 00001111111
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
-..-|+|+=+ +. ++.+--.++++++-++++|+..+.-.+..
T Consensus 85 ~~~ad~ViEa-v~---E~l~iK~~lf~~l~~~~~~~aIlaSNTSs 125 (319)
T 3ado_A 85 VEGVVHIQEC-VP---ENLDLKRKIFAQLDSIVDDRVVLSSSSSC 125 (319)
T ss_dssp TTTEEEEEEC-CC---SCHHHHHHHHHHHHTTCCSSSEEEECCSS
T ss_pred hccCcEEeec-cc---cHHHHHHHHHHHHHHHhhhcceeehhhhh
Confidence 2345776654 22 45555579999999999998755555433
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=90.04 E-value=0.35 Score=38.10 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~ 52 (175)
.-+++||-||.|.+++-+.+.+...|.++|+++... +..+.|.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~-~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAV-RTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHH-HHHHHHS
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHH-HHHHHhc
Confidence 467999999999999999766333489999999886 5555553
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.099 Score=43.83 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=57.3
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CC-----C-CC
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AF-----P-IP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~-~~ 75 (175)
...+|.+||=.|+ |.|..++.+++..|.+|++++.+++. +.++ .+. ..+ ++..+ +. . ..
T Consensus 342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k~--~~l~-----lga----~~v-~~~~~~~~~~~i~~~t~ 409 (795)
T 3slk_A 342 GLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKW--QAVE-----LSR----EHL-ASSRTCDFEQQFLGATG 409 (795)
T ss_dssp CCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGGG--GGSC-----SCG----GGE-ECSSSSTHHHHHHHHSC
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHHh--hhhh-----cCh----hhe-eecCChhHHHHHHHHcC
Confidence 4567899999984 46999999999999999999865521 1111 111 001 11000 00 0 12
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+|+-+-. . ..++...++++|+|+++..
T Consensus 410 g~GvDvVld~~g----g------~~~~~~l~~l~~~Gr~v~i 441 (795)
T 3slk_A 410 GRGVDVVLNSLA----G------EFADASLRMLPRGGRFLEL 441 (795)
T ss_dssp SSCCSEEEECCC----T------TTTHHHHTSCTTCEEEEEC
T ss_pred CCCeEEEEECCC----c------HHHHHHHHHhcCCCEEEEe
Confidence 346999997422 1 3457788999999998876
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.58 Score=30.50 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=28.0
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 4 REWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
+....+.+|+=+|+|. |......+...+.+|+++|.++..+
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~ 55 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAF 55 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGG
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 4556688999999875 5554444444478999999998664
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.29 E-value=1.2 Score=31.91 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=47.5
Q ss_pred cEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 11 RCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+|.=||||. |.. +..+++. +.+|+++|.+++.+ +.+.+ .+.. .... ...... ...|+|+..-.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~~~~-~~~~~----~g~~---~~~~----~~~~~~-~~~D~vi~av~- 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTC-EKAVE----RQLV---DEAG----QDLSLL-QTAKIIFLCTP- 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHH----TTSC---SEEE----SCGGGG-TTCSEEEECSC-
T ss_pred EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHh----CCCC---cccc----CCHHHh-CCCCEEEEECC-
Confidence 466688875 433 3344443 67899999998775 33321 1220 0111 111112 45798887532
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
......+++++...++|+..++
T Consensus 67 -----~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 67 -----IQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp -----HHHHHHHHHHHGGGSCTTCEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEE
Confidence 2244577888888888876443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=1.4 Score=31.92 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=52.0
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh--------hC-CCCCC-ccee--eccCCCCCCCC
Q 030558 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNST--------TN-GITPA-LPHI--KHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~--------~~-~~~~~-~~~~--~~~~~~~~~~~ 75 (175)
++|.=||+|+ |. ++..+++. |.+|+.+|.+++.++ .+...+. .. ..... .... ......+....
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINTDALD-AAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSHHHHH-HHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 4677788876 33 33444444 889999999998763 3322211 10 11000 0000 00001111111
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
-...|+|+.+-. +..+....+++++...++|+..++
T Consensus 83 ~~~aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 83 VKDADLVIEAVP----ESLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp TTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hccCCEEEEecc----CcHHHHHHHHHHHHhhCCCCcEEE
Confidence 235699887633 223344578889999999876544
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.92 E-value=0.72 Score=34.60 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=57.2
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc--CCCCC-CCC-CCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS--WGDAF-PIP-NPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-~~~ 78 (175)
...+|.+||=+|+|. |..+..+++.. |.+|+++|.+++.+ +.++. .+.. ..+... +.+.. ... ...
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~-~~~~~----lGa~---~vi~~~~~~~~~v~~~~~g~g 254 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL-KLAER----LGAD---HVVDARRDPVKQVMELTRGRG 254 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH-HHHHH----TTCS---EEEETTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH----hCCC---EEEeccchHHHHHHHHhCCCC
Confidence 355789999999974 88888898988 88999999998765 44432 1220 011110 00000 111 226
Q ss_pred ccEEEeCCcccCcccchHHHH--HHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIK--SLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~--~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+-.-.- + . .++...+. ++|+++..
T Consensus 255 ~Dvvid~~G~------~---~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 255 VNVAMDFVGS------Q---ATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp EEEEEESSCC------H---HHHHHGGGGEE--EEEEEEEC
T ss_pred CcEEEECCCC------c---hHHHHHHHhhc--CCCEEEEE
Confidence 9999865331 1 2 55566666 89988776
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=88.92 E-value=2.1 Score=31.58 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=53.4
Q ss_pred CCCcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHH-hhCCCCCCcce-eeccCCCCCCCCCCCccEEE
Q 030558 8 ERRRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS-TTNGITPALPH-IKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~fD~i~ 83 (175)
...+|.=||+|. | .++..+++. +.+|+.+ .+++.+ +.+++.. ..... .... ......++.. ....+|+|+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~~~~~-~~i~~~g~~~~~~--~~~~~~~~~~~~~~~-~~~~~D~vi 91 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA-GHEVILI-ARPQHV-QAIEATGLRLETQ--SFDEQVKVSASSDPS-AVQGADLVL 91 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CCHHHH-HHHHHHCEEEECS--SCEEEECCEEESCGG-GGTTCSEEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC-CCeEEEE-EcHhHH-HHHHhCCeEEEcC--CCcEEEeeeeeCCHH-HcCCCCEEE
Confidence 457899999986 4 344556554 7889999 887665 4443321 11000 0000 0000011111 124689988
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
..--- ..+..+++++...++|+..++...
T Consensus 92 lavk~------~~~~~~l~~l~~~l~~~~~iv~~~ 120 (318)
T 3hwr_A 92 FCVKS------TDTQSAALAMKPALAKSALVLSLQ 120 (318)
T ss_dssp ECCCG------GGHHHHHHHHTTTSCTTCEEEEEC
T ss_pred EEccc------ccHHHHHHHHHHhcCCCCEEEEeC
Confidence 75322 145588889988888886555443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.56 Score=34.35 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=52.7
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.+++|+=+|+|. |......++..+.+|+++|.++... +.+.. .+. ..... ..+...-...|+|+.
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~-~~~~~----~g~----~~~~~---~~l~~~l~~aDvVi~ 221 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHL-ARITE----MGL----VPFHT---DELKEHVKDIDICIN 221 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTC----EEEEG---GGHHHHSTTCSEEEE
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHH----CCC----eEEch---hhHHHHhhCCCEEEE
Confidence 45789999999985 6666655566688999999988654 22221 122 11111 111111235799988
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.. +.. . ++..+.++|++.++-+
T Consensus 222 ~~p~-~~i--~------~~~~~~mk~g~~lin~ 245 (300)
T 2rir_A 222 TIPS-MIL--N------QTVLSSMTPKTLILDL 245 (300)
T ss_dssp CCSS-CCB--C------HHHHTTSCTTCEEEEC
T ss_pred CCCh-hhh--C------HHHHHhCCCCCEEEEE
Confidence 7554 211 1 2345778998755443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.53 E-value=0.66 Score=33.86 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=30.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.+.+++|+=+|+|. |......++..|.+|+++|.++...
T Consensus 152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~ 191 (293)
T 3d4o_A 152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLL 191 (293)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 35789999999985 6666665566688999999988654
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.36 E-value=2.6 Score=29.94 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCcEEEeCCCc-cHH-HHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 9 RRRCIELGSGT-GAL-AIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~-~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
+.+|.=||+|. |.. +..+++. +.+ |+.+|.+++.+ +.+.... +. . .. ......-...|+|+..
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~-~~~~~~~---g~----~-~~----~~~~~~~~~~Dvvi~a 75 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRTEESA-RELAQKV---EA----E-YT----TDLAEVNPYAKLYIVS 75 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSHHHH-HHHHHHT---TC----E-EE----SCGGGSCSCCSEEEEC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCCHHHH-HHHHHHc---CC----c-ee----CCHHHHhcCCCEEEEe
Confidence 45788899975 433 3445444 677 89999998776 3333221 12 1 11 1111111357998875
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.- .....+++++...++++..++-.
T Consensus 76 v~~------~~~~~v~~~l~~~~~~~~ivv~~ 101 (266)
T 3d1l_A 76 LKD------SAFAELLQGIVEGKREEALMVHT 101 (266)
T ss_dssp CCH------HHHHHHHHHHHTTCCTTCEEEEC
T ss_pred cCH------HHHHHHHHHHHhhcCCCcEEEEC
Confidence 332 13457788888778777544433
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.24 E-value=1.7 Score=31.24 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=47.8
Q ss_pred cEEEeCCCc-cHH-HHHHHHhCCC--cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCC-CccEEEeC
Q 030558 11 RCIELGSGT-GAL-AIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP-DWDLILAS 85 (175)
Q Consensus 11 ~vLDlGcG~-G~~-~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fD~i~~~ 85 (175)
+|.=||+|. |.. +..+++. +. +|+++|.+++.+ +.+.. .+.. .... .+....-. ..|+|+.+
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~-~~~~~----~g~~---~~~~----~~~~~~~~~~aDvVila 69 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESI-SKAVD----LGII---DEGT----TSIAKVEDFSPDFVMLS 69 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHH-HHHHH----TTSC---SEEE----SCGGGGGGTCCSEEEEC
T ss_pred EEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCHHHH-HHHHH----CCCc---cccc----CCHHHHhcCCCCEEEEc
Confidence 566788875 443 3444443 55 799999998765 33321 1220 0011 11111112 57888875
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-.. .....+++++...++++..++.
T Consensus 70 vp~------~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 70 SPV------RTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp SCH------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCH------HHHHHHHHHHHhhCCCCcEEEE
Confidence 322 2344778888888888864443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.92 E-value=2.8 Score=32.79 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=54.7
Q ss_pred CcEEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHH----HHHHHHhhCCCCC-----CcceeeccCCCCCCCCCCC
Q 030558 10 RRCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIED----NIAYNSTTNGITP-----ALPHIKHSWGDAFPIPNPD 78 (175)
Q Consensus 10 ~~vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 78 (175)
++|.=||+|+ +.++..+++. |.+|+++|.+++.... ++++......... ....+. ...++. .-..
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~--~t~dl~-al~~ 130 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLA-GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLK--ITSDFH-KLSN 130 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEE--EESCGG-GCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceE--EeCCHH-HHcc
Confidence 5688889986 4445566555 8899999999973212 2222222211100 000111 111222 1235
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.|+|+.+-. ++..-...+++++...++|+..+...
T Consensus 131 aDlVIeAVp----e~~~vk~~v~~~l~~~~~~~aIlasn 165 (460)
T 3k6j_A 131 CDLIVESVI----EDMKLKKELFANLENICKSTCIFGTN 165 (460)
T ss_dssp CSEEEECCC----SCHHHHHHHHHHHHTTSCTTCEEEEC
T ss_pred CCEEEEcCC----CCHHHHHHHHHHHHhhCCCCCEEEec
Confidence 799887532 23333457889999999998755433
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.08 E-value=1.8 Score=27.39 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=24.8
Q ss_pred CCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 8 ERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 8 ~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
..++|+=+|+|. |..........+.+|+++|.+++.+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~ 42 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKI 42 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 346899999975 4433222233388999999999776
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=86.99 E-value=1.5 Score=31.98 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=47.3
Q ss_pred CCcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 9 RRRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
..+|.=||+|. |. ++..+++. |.+|+++|.+++.+ +.+... +. .... ......-...|+|+..-
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~-~~~~~~----g~----~~~~----~~~~e~~~~aDvvi~~v 72 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA-GLSTWGADLNPQAC-ANLLAE----GA----CGAA----ASAREFAGVVDALVILV 72 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHHT----TC----SEEE----SSSTTTTTTCSEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEECCHHHH-HHHHHc----CC----cccc----CCHHHHHhcCCEEEEEC
Confidence 35688888885 44 33445444 78999999999776 333221 22 0101 11111123458887742
Q ss_pred cccCcccchHHHHHH---HHHHhhcCCCCcee
Q 030558 87 ILLYVKQYSNLIKSL---SVLLKSYKPKDSQV 115 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l---~~l~~~l~pgG~~~ 115 (175)
+.......++ +++...++||..++
T Consensus 73 -----p~~~~~~~v~~~~~~l~~~l~~g~ivv 99 (303)
T 3g0o_A 73 -----VNAAQVRQVLFGEDGVAHLMKPGSAVM 99 (303)
T ss_dssp -----SSHHHHHHHHC--CCCGGGSCTTCEEE
T ss_pred -----CCHHHHHHHHhChhhHHhhCCCCCEEE
Confidence 2222334554 55667777765443
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=86.94 E-value=9.4 Score=29.76 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=52.6
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh--------h---CCC--CCCcceeeccCCCCCCC
Q 030558 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNST--------T---NGI--TPALPHIKHSWGDAFPI 74 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~--------~---~~~--~~~~~~~~~~~~~~~~~ 74 (175)
++|.=||+|. |. ++..+++. |.+|+++|.+++.++ .+..... . ... ......+. .+..
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~~~~~-~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~----~~~~- 110 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARV-GISVVAVESDPKQLD-AAKKIITFTLEKEASRAHQNGQASAKPKLRFS----SSTK- 110 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSHHHHH-HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEE----SCGG-
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEEECCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhc----CCHH-
Confidence 5688899987 43 34455554 789999999998763 2222111 0 000 00001111 1111
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.-...|+|+.+-. .+..-...+++++...++|+..++.
T Consensus 111 ~~~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 111 ELSTVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp GGTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHCCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 1235788887532 2232335788888888988865544
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=86.85 E-value=1.7 Score=32.04 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=52.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHH-HhhCC-CCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-STTNG-ITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.+|+=||+|. | .++..|++. +.+|+.++.++ . +.++++ ...+. ..............+.......+|+|+..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~--~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila 78 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD--Y-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC 78 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT--H-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh--H-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence 4678889986 4 344556554 78899999987 2 333332 11111 10111100001111111112368998875
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
--- .... .+++.+...++++..++....+
T Consensus 79 vK~---~~~~---~~l~~l~~~l~~~t~Iv~~~nG 107 (320)
T 3i83_A 79 IKV---VEGA---DRVGLLRDAVAPDTGIVLISNG 107 (320)
T ss_dssp CCC---CTTC---CHHHHHTTSCCTTCEEEEECSS
T ss_pred cCC---CChH---HHHHHHHhhcCCCCEEEEeCCC
Confidence 333 1122 6778888888888765555333
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=86.76 E-value=1.8 Score=28.88 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=27.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhC-CCcEEEEeCChHHH
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~-~~~v~~~D~s~~~l 44 (175)
..+.+|+=+|+|. |.......... +.+|+++|.+++.+
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~ 76 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAA 76 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHH
Confidence 4467899999874 55544444444 78899999999775
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=86.68 E-value=2.3 Score=27.02 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 9 RRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
..+|+=+|||. |..........+.+|+++|.+++.+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~ 43 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRV 43 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHH
Confidence 45788899875 5544433344488999999999876
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.64 E-value=3.1 Score=30.13 Aligned_cols=99 Identities=18% Similarity=0.099 Sum_probs=51.0
Q ss_pred CcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHH-hhCCCCCCcceeeccCCCCCCCCC--CCccEEEe
Q 030558 10 RRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNS-TTNGITPALPHIKHSWGDAFPIPN--PDWDLILA 84 (175)
Q Consensus 10 ~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~fD~i~~ 84 (175)
.+|.=||+|. |.. +..+++. +.+|+++|.+++.+ +.+.+.. ..... ...........+...... ...|+|+.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQWPAHI-EAIRKNGLIADFN-GEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHCEEEEET-TEEEEECCCEECGGGCCTTSCCCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CCcEEEEECCHHHH-HHHHhCCEEEEeC-CCeeEecceeecchhhcccCCCCCEEEE
Confidence 3688889875 433 3445444 77899999998776 3333221 00000 000000000001101111 26799887
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-- ......+++++...++|+..++..
T Consensus 81 ~v~------~~~~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 81 LTK------AQQLDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp CSC------HHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred Eec------cccHHHHHHHHHHhcCCCCEEEEe
Confidence 532 224557888888888887655444
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.64 E-value=0.43 Score=30.81 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCCCCCCccEEEeCCccc-CcccchHHHHHHHHHHhhcCCCCceee
Q 030558 72 FPIPNPDWDLILASDILL-YVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~-~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
..++.++||.|+...--- .....+ ..+++.+++.|||||.|.-
T Consensus 53 VsLp~stYD~V~~lt~~~~~~~~l~--r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 53 ITLENAKYETVHYLTPEAQTDIKFP--KKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCCSSSCCSEEEECCCSSCSCCCC--HHHHHHHHTTCCTTCCEEC
T ss_pred ccCCcccccEEEEecCCccchhhcC--HHHHHHHHHHhCCCCEEEe
Confidence 356778999887632110 001111 4999999999999997764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=86.63 E-value=4.9 Score=28.36 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=58.4
Q ss_pred cCCCcEEEeCCC--c--cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-------
Q 030558 7 IERRRCIELGSG--T--GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG--~--G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (175)
++++++|=.|++ . |. ++..+++. |.+|+.++.++... +..+......+. .++..+..+..+....
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERLE-KSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGH-HHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHHH-HHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHH
Confidence 568889988875 2 32 23445454 88999999887553 333333332221 1344455555432211
Q ss_pred --CCCCccEEEeCCcccC---------cccchHHH-----------HHHHHHHhhcCCCCceeec
Q 030558 75 --PNPDWDLILASDILLY---------VKQYSNLI-----------KSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 --~~~~fD~i~~~~~l~~---------~~~~~~~~-----------~~l~~l~~~l~pgG~~~~~ 117 (175)
.-+..|+++.+..+.. ..+.+++. .+++.+...++++|+++.+
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 146 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL 146 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 0136788887655422 11112222 3455666777777877665
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=86.57 E-value=1.2 Score=32.39 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=50.4
Q ss_pred CCcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 9 RRRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 9 ~~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
..+|.=||+|. |. ++..+++. +.+|+++|.+++.+ +.+... +. .. .+.....-. .|+|+..-
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~-~~~~~~----g~----~~-----~~~~~~~~~-aDvvi~~v 78 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIEAM-TPLAEA----GA----TL-----ADSVADVAA-ADLIHITV 78 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTTTS-HHHHHT----TC----EE-----CSSHHHHTT-SSEEEECC
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHHHH-HHHHHC----CC----EE-----cCCHHHHHh-CCEEEEEC
Confidence 35788899886 54 33445443 78899999999775 333221 22 00 011111112 68888742
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
+.......+++++...++||..++-
T Consensus 79 -----p~~~~~~~v~~~l~~~l~~g~ivv~ 103 (296)
T 3qha_A 79 -----LDDAQVREVVGELAGHAKPGTVIAI 103 (296)
T ss_dssp -----SSHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred -----CChHHHHHHHHHHHHhcCCCCEEEE
Confidence 3233455778888888888764443
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.50 E-value=4.6 Score=31.79 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=53.9
Q ss_pred CcEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHH---HHhhCCCCCCccee-------eccCCCCCCCCCC
Q 030558 10 RRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAY---NSTTNGITPALPHI-------KHSWGDAFPIPNP 77 (175)
Q Consensus 10 ~~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 77 (175)
++|-=||+|+ | .++..+++. |.+|+++|.+++.+++..+. +.........+... .+....+.. .-.
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASH-GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence 4677788886 3 445556555 88999999999887432221 11111000001000 000111111 123
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.-|+|+.+-. ++......+++++...++|+..++.
T Consensus 84 ~aDlVIeAVp----e~~~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 84 AADLVIEAAS----ERLEVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp GCSEEEECCC----CCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCEEEEcCC----CcHHHHHHHHHHHHHhhccCcEEEe
Confidence 4688887532 2223345888999999999875544
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=86.41 E-value=5.9 Score=28.15 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=58.2
Q ss_pred cccCCCcEEEeCCCccHHHHH----HHHhCCCcEEEEeCCh-HHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-----
Q 030558 5 EWIERRRCIELGSGTGALAIF----LRKAMNLDITTSDYND-QEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI----- 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~----l~~~~~~~v~~~D~s~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 74 (175)
..++++++|=-|++.| ++.. |++. |.+|+.++.+. ..+ +.........+. .+..+..+..+....
T Consensus 14 ~~l~~k~~lVTGas~g-IG~aia~~l~~~-G~~V~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 14 GRLDGKVALVTGSGRG-IGAAVAVHLGRL-GAKVVVNYANSTKDA-EKVVSEIKALGS--DAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TCCTTCEEEESCTTSH-HHHHHHHHHHHT-TCEEEEEESSCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHH
T ss_pred CCcCCCEEEEECCCch-HHHHHHHHHHHC-CCEEEEEcCCCHHHH-HHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHH
Confidence 3467888888886544 3443 4444 88999887754 333 333333333222 334444444431110
Q ss_pred ----CCCCccEEEeCCcccCcc-----cchHH-----------HHHHHHHHhhcCCCCceeec
Q 030558 75 ----PNPDWDLILASDILLYVK-----QYSNL-----------IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ----~~~~fD~i~~~~~l~~~~-----~~~~~-----------~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-+..|+++.+..+.... +.+++ ..+.+.+.+.++++|+++..
T Consensus 89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 151 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT 151 (270)
T ss_dssp HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 013679888765543221 12222 23456677788888877765
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.39 E-value=4.2 Score=29.24 Aligned_cols=80 Identities=8% Similarity=0.093 Sum_probs=43.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CC---C----
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FP---I---- 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~---- 74 (175)
..+++++|=.|++. .++..+++.+ |.+|++++.++..+++..+ .+...+. ..+..+..+..+. .. +
T Consensus 9 ~~~~k~vlITGas~-GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~-~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 9 VTKRRCAVVTGGNK-GIGFEICKQLSSNGIMVVLTCRDVTKGHEAVE-KLKNSNH-ENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp ---CCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTTTC-CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHhcCC-CceEEEEccCCCcHHHHHHHHHHH
Confidence 34577888777654 4454443332 8899999999877633333 3332221 2344455555443 10 0
Q ss_pred --CCCCccEEEeCCcc
Q 030558 75 --PNPDWDLILASDIL 88 (175)
Q Consensus 75 --~~~~fD~i~~~~~l 88 (175)
..+..|+++.+..+
T Consensus 86 ~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 86 KTHFGKLDILVNNAGV 101 (311)
T ss_dssp HHHHSSCCEEEECCCC
T ss_pred HHhCCCCCEEEECCcc
Confidence 01468999887765
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=86.15 E-value=0.94 Score=35.39 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=31.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
.+.|++|+=+|+|. |......++.+|.+|+++|.++..
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~ 282 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC 282 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 46789999999996 777777777779999999998854
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=85.91 E-value=6.5 Score=28.22 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=48.8
Q ss_pred CcEEEeCC-Cc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 10 RRCIELGS-GT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 10 ~~vLDlGc-G~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+|.=||+ |. |.. +..+++. +.+|+++|.+++.+ +.+.. .+. .. .+ ....-...|+|+..-
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~~~~-~~~~~----~g~----~~-----~~-~~~~~~~aDvVi~av 75 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS-AHHLAAIEIAPEGR-DRLQG----MGI----PL-----TD-GDGWIDEADVVVLAL 75 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSHHHH-HHHHH----TTC----CC-----CC-SSGGGGTCSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCHHHH-HHHHh----cCC----Cc-----CC-HHHHhcCCCEEEEcC
Confidence 47888998 85 443 3445443 77899999998765 33332 122 10 01 111123579988753
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
. ......+++++...++|+..++
T Consensus 76 ~------~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 76 P------DNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp C------HHHHHHHHHHHGGGSCTTCEEE
T ss_pred C------chHHHHHHHHHHHhCCCCCEEE
Confidence 2 1235578888888888875443
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.77 E-value=5 Score=28.60 Aligned_cols=107 Identities=11% Similarity=0.125 Sum_probs=57.2
Q ss_pred ccCCCcEEEeCCCccHHHHH----HHHhCCCcEEEEeCC------------hHHHHHHHHHHHhhCCCCCCcceeeccCC
Q 030558 6 WIERRRCIELGSGTGALAIF----LRKAMNLDITTSDYN------------DQEIEDNIAYNSTTNGITPALPHIKHSWG 69 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~----l~~~~~~~v~~~D~s------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (175)
.++++++|=-|++.| ++.. |++. |.+|+.+|.+ ...+ +.........+. .+..+..+..
T Consensus 7 ~l~gk~vlVTGas~g-IG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~ 81 (287)
T 3pxx_A 7 RVQDKVVLVTGGARG-QGRSHAVKLAEE-GADIILFDICHDIETNEYPLATSRDL-EEAGLEVEKTGR--KAYTAEVDVR 81 (287)
T ss_dssp TTTTCEEEEETTTSH-HHHHHHHHHHHT-TCEEEEEECCSCCTTSCSCCCCHHHH-HHHHHHHHHTTS--CEEEEECCTT
T ss_pred ccCCCEEEEeCCCCh-HHHHHHHHHHHC-CCeEEEEcccccccccccchhhhHHH-HHHHHHHHhcCC--ceEEEEccCC
Confidence 356888988887553 3433 4444 8899999987 4444 233333333222 3344444544
Q ss_pred CCCCC---------CCCCccEEEeCCcccCc---ccchHHH-----------HHHHHHHhhcCCCCceeec
Q 030558 70 DAFPI---------PNPDWDLILASDILLYV---KQYSNLI-----------KSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 70 ~~~~~---------~~~~fD~i~~~~~l~~~---~~~~~~~-----------~~l~~l~~~l~pgG~~~~~ 117 (175)
+.... .-+..|+++.+..+... .+.+++. .+++.+.+.++++|.++.+
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 32110 01367988876654321 1222222 3445566677777876665
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.53 E-value=0.47 Score=35.23 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCCCCccEEEeCCcccCccc------------chHHHHHHHHHHhhcCCCCceeeccc
Q 030558 74 IPNPDWDLILASDILLYVKQ------------YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~------------~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
.++++||+|++.... .... ...+..+++++.++|+|||.+++.+.
T Consensus 29 l~~~svDlI~tDPPY-~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 29 FPEESISLVMTSPPF-ALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SCSSCEEEEEECCCC-SSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCeeEEEECCCC-CCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 346789999997664 2210 12467899999999999999988643
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=85.34 E-value=1.2 Score=34.70 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=53.7
Q ss_pred ccCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcce--------eeccCCCCCCC
Q 030558 6 WIERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPH--------IKHSWGDAFPI 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~ 74 (175)
....-+|-=||.|. |... ..+++. |.+|+++|++++.+ +.++.. .+... ..... -.+....+...
T Consensus 5 ~~~~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~kv-~~l~~g--~~~~~epgl~~~~~~~~~~g~l~~ttd~~e 80 (446)
T 4a7p_A 5 HHGSVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDARKI-ELLHQN--VMPIYEPGLDALVASNVKAGRLSFTTDLAE 80 (446)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTH-HHHTTT--CCSSCCTTHHHHHHHHHHTTCEEEESCHHH
T ss_pred cCCceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHHHH-HHHhcC--CCCccCCCHHHHHHhhcccCCEEEECCHHH
Confidence 33455677778775 5444 345444 88999999999876 443321 11000 00000 00001111110
Q ss_pred CCCCccEEEeCCcc-----cCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDIL-----LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l-----~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-..-|+|+..-.. ...++...+..+++.+.+.+++|..++..
T Consensus 81 a~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ 128 (446)
T 4a7p_A 81 GVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK 128 (446)
T ss_dssp HHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC
T ss_pred HHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 11235777765211 11223335778888999999887654443
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.22 E-value=3.6 Score=29.14 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=25.7
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 44 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l 44 (175)
.++++++|=.|++ |.++..+++.+ |.+|+++|.++..+
T Consensus 4 m~~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 44 (267)
T 2gdz_A 4 MVNGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAG 44 (267)
T ss_dssp CCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred ccCCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 3567888888864 44444433322 88999999988665
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=84.81 E-value=0.77 Score=35.31 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=34.4
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCc----EEEEeCChHHHHHHHHHHHh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLD----ITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~----v~~~D~s~~~l~~~~~~~~~ 53 (175)
++.-+|+|+-||.|..+..+.+.+ ..- |.++|+++.++ +..+.+..
T Consensus 8 ~~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~-~ty~~n~~ 59 (403)
T 4dkj_A 8 IKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAI-VSYVAIHS 59 (403)
T ss_dssp CEEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHH-HHHHHHHC
T ss_pred cccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHH-HHHHHHcC
Confidence 344689999999999999886653 123 88899999886 55555544
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=84.79 E-value=1.2 Score=34.56 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=30.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
.+.|++|.=+|.|. |......++..|.+|+++|+++..
T Consensus 208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~ 246 (436)
T 3h9u_A 208 MIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN 246 (436)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred cccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhh
Confidence 35689999999886 776666667779999999999854
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=84.64 E-value=0.74 Score=43.53 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=61.5
Q ss_pred cccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCC-CCCCcc
Q 030558 5 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPI-PNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~fD 80 (175)
...+|.+||=.|+ |.|..++.+|+..|.+|++++.+++.. +.+++....-+....++.-..++.+. .+. ....+|
T Consensus 1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~-~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvD 1742 (2512)
T 2vz8_A 1664 RMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKR-AYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVD 1742 (2512)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEE
T ss_pred cCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhh-HHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCce
Confidence 4557899998864 469999999998899999999988664 44443211111100000000000000 011 123699
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+-+ . . . ..++...++++|+|+++..
T Consensus 1743 vVld~--~---g--~---~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1743 LVLNS--L---A--E---EKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp EEEEC--C---C--H---HHHHHHHTTEEEEEEEEEC
T ss_pred EEEEC--C---C--c---hHHHHHHHhcCCCcEEEEe
Confidence 99863 2 1 2 5688899999999988776
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=1.3 Score=33.18 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCCh---HHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--C--CCCCcc
Q 030558 9 RRRCIELGSGT-GALAIFLRKAMNLDITTSDYND---QEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--I--PNPDWD 80 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~fD 80 (175)
|++||=+|+|. |..+..+++..|.+|+++|.++ +.+ +.++.. +. ..+ + .+... . ..+.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~~----ga----~~v--~-~~~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEET----KT----NYY--N-SSNGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHHH----TC----EEE--E-CTTCSHHHHHHHCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHHh----CC----cee--c-hHHHHHHHHHhCCCCC
Confidence 89999999964 7777777777788999999987 664 433321 11 111 1 11100 0 014689
Q ss_pred EEEeCCcccCcccchHHHHHH-HHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~~ 117 (175)
+|+.+... . ..+ +...+.++++|+++..
T Consensus 249 ~vid~~g~---~------~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGA---D------VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCC---C------THHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCC---h------HHHHHHHHHHHhcCCEEEEE
Confidence 99875432 1 245 7888999999988776
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=84.33 E-value=5.4 Score=28.47 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=47.2
Q ss_pred ccCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC--------
Q 030558 6 WIERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-------- 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 74 (175)
.++||++|==|++.|. .+..|++. |.+|+.+|.+++.+ +...+.+...+. +...+..|..+....
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~-Ga~Vv~~~~~~~~~-~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALN-DSIVVAVELLEDRL-NQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTF 79 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence 3578888888876654 22344444 88999999999887 444444444333 334455555432110
Q ss_pred -CCCCccEEEeCCcc
Q 030558 75 -PNPDWDLILASDIL 88 (175)
Q Consensus 75 -~~~~fD~i~~~~~l 88 (175)
.-+..|+++.+.-+
T Consensus 80 ~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 80 ETYSRIDVLCNNAGI 94 (254)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCcc
Confidence 12467888876543
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.29 E-value=1.9 Score=28.61 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=27.1
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCC
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYN 40 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s 40 (175)
.+-|||+|-|+|+.--.+...+ +..|+++|-.
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~ 73 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERA 73 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESS
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEee
Confidence 3569999999999998898766 6789999973
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=84.21 E-value=1.1 Score=35.33 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=51.3
Q ss_pred ccccCCCcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCC--CC
Q 030558 4 REWIERRRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPN--PD 78 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 78 (175)
...+..++|.=||+|. |. ++..+++. |.+|+++|.+++.+ +.+.......+. .. ..+.. ... +.
T Consensus 10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~~~~~-~~l~~~~~~~gi----~~-----~~s~~e~v~~l~~ 78 (480)
T 2zyd_A 10 HHHMSKQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRSREKT-EEVIAENPGKKL----VP-----YYTVKEFVESLET 78 (480)
T ss_dssp -----CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSHHHH-HHHHHHSTTSCE----EE-----CSSHHHHHHTBCS
T ss_pred ccccCCCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCCHHHH-HHHHhhCCCCCe----EE-----eCCHHHHHhCCCC
Confidence 3455667888899886 44 34556554 78999999999776 333322110011 00 01110 000 13
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
.|+|+..- +.......+++++...++||..++
T Consensus 79 aDvVil~V-----p~~~~v~~vl~~l~~~l~~g~iII 110 (480)
T 2zyd_A 79 PRRILLMV-----KAGAGTDAAIDSLKPYLDKGDIII 110 (480)
T ss_dssp SCEEEECS-----CSSSHHHHHHHHHGGGCCTTCEEE
T ss_pred CCEEEEEC-----CCHHHHHHHHHHHHhhcCCCCEEE
Confidence 68887742 222345588888888888875443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=83.95 E-value=2.3 Score=32.23 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=56.9
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++++|+=+|+|. |......++..|.+|+++|.++..+ +.++... +. ......... ..+...-...|+|+.+
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l-~~~~~~~---g~--~~~~~~~~~-~~l~~~l~~aDvVi~~ 238 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKL-RQLDAEF---CG--RIHTRYSSA-YELEGAVKRADLVIGA 238 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHT---TT--SSEEEECCH-HHHHHHHHHCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHhc---CC--eeEeccCCH-HHHHHHHcCCCEEEEC
Confidence 5789999999975 7777777777788999999999765 3333211 11 000000000 0000001247998874
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
-..-.. ..+. -+.++..+.++|||.++-..
T Consensus 239 ~~~p~~-~t~~--li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 239 VLVPGA-KAPK--LVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCTTS-CCCC--CBCHHHHTTSCTTCEEEEGG
T ss_pred CCcCCC-CCcc--eecHHHHhcCCCCcEEEEEe
Confidence 322010 1111 12456778899999776653
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.82 E-value=1.6 Score=32.94 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=31.5
Q ss_pred cCCCcEEEe--CCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 030558 7 IERRRCIEL--GSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIA 49 (175)
Q Consensus 7 ~~~~~vLDl--GcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~ 49 (175)
.+|.+||=+ |+| .|..+..+++..|.+|+++|.+++.+ +.++
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~-~~~~ 213 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQA-DLLK 213 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHH-HHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHH
Confidence 467889988 444 36777778887789999999998775 4443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.70 E-value=2.6 Score=30.42 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=49.3
Q ss_pred CCcEEEeCCCc-cH-HHHHHHHhCCC---cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 9 RRRCIELGSGT-GA-LAIFLRKAMNL---DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 9 ~~~vLDlGcG~-G~-~~~~l~~~~~~---~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+|.=||||. |. ++..+++. +. +|+.+|.+++.+ +.+... .+. .. . .+....-...|+|+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-g~~~~~V~v~dr~~~~~-~~l~~~---~gi----~~-~----~~~~~~~~~aDvVi 68 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-GYDPNRICVTNRSLDKL-DFFKEK---CGV----HT-T----QDNRQGALNADVVV 68 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-TCCGGGEEEECSSSHHH-HHHHHT---TCC----EE-E----SCHHHHHSSCSEEE
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-CCCCCeEEEEeCCHHHH-HHHHHH---cCC----EE-e----CChHHHHhcCCeEE
Confidence 35788899986 43 44555554 55 899999999776 333321 122 11 0 11100012458888
Q ss_pred eCCcccCcccchHHHHHHHHHHhh-cCCCCcee
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKS-YKPKDSQV 115 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~-l~pgG~~~ 115 (175)
..-- ......+++++... ++++..++
T Consensus 69 lav~------p~~~~~vl~~l~~~~l~~~~iii 95 (280)
T 3tri_A 69 LAVK------PHQIKMVCEELKDILSETKILVI 95 (280)
T ss_dssp ECSC------GGGHHHHHHHHHHHHHTTTCEEE
T ss_pred EEeC------HHHHHHHHHHHHhhccCCCeEEE
Confidence 7532 23455888888887 77664333
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=83.60 E-value=1.7 Score=37.45 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCC--cEEEEeCChHHHHHHHHHHH
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~--~v~~~D~s~~~l~~~~~~~~ 52 (175)
.-+++||-||.|.+++-+.+. |. .+.++|+++... +..+.|.
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~-~ty~~N~ 583 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAA-QAFRLNN 583 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHH-HHHHHHC
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHH-HHHHHhC
Confidence 457999999999999999777 54 588999999886 5555553
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.59 E-value=3.3 Score=31.12 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=53.0
Q ss_pred CCcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee-eccCCCCCCCCCCCccEEEeC
Q 030558 9 RRRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+|.=||+|. |. ++..+++. +.+|+.+|.+++.+ +.++.........+..... ......+....-...|+|+..
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~~~~~-~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila 106 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK-GQKVRLWSYESDHV-DEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV 106 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT-TCCEEEECSCHHHH-HHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred CCeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCHHHH-HHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence 35788899986 43 34445444 78899999998776 4443322110000000000 000001111011246888765
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-. ...+..+++++...++|+..++..
T Consensus 107 Vp------~~~~~~vl~~i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 107 VP------SFAFHEVITRMKPLIDAKTRIAWG 132 (356)
T ss_dssp CC------HHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred CC------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 235668888888888887655444
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=83.46 E-value=2.1 Score=32.81 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=32.7
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
.++++|+=+|+|. |..+..+++..|.+|+++|.++..+
T Consensus 170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~ 208 (401)
T 1x13_A 170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVK 208 (401)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 4689999999986 8888888887888999999999765
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=82.92 E-value=1.4 Score=36.78 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCcEEEeCCCccHHHHHHHHhCC------CcEEEEeCChHHHHHHHHHH
Q 030558 9 RRRCIELGSGTGALAIFLRKAMN------LDITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~------~~v~~~D~s~~~l~~~~~~~ 51 (175)
..+|+||=||.|.++.-+.+.++ .-+.++|+++.++ +..+.|
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~-~Ty~~N 259 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFAC-QSLKYN 259 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHH-HHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHH-HHHHHH
Confidence 35799999999999988866531 2479999999887 555555
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=82.78 E-value=4.6 Score=28.87 Aligned_cols=83 Identities=8% Similarity=-0.093 Sum_probs=46.5
Q ss_pred cEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 11 RCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+|.=||+|. |... ..++ . +.+|+++|.+++.. +.+... +. ... + ....-...|+|+..-.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~-~-g~~V~~~~~~~~~~-~~~~~~----g~----~~~-----~-~~~~~~~~D~vi~~v~- 64 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLA-R-RFPTLVWNRTFEKA-LRHQEE----FG----SEA-----V-PLERVAEARVIFTCLP- 64 (289)
T ss_dssp CEEEECCSTTHHHHHHHHH-T-TSCEEEECSSTHHH-HHHHHH----HC----CEE-----C-CGGGGGGCSEEEECCS-
T ss_pred eEEEEcccHHHHHHHHHHh-C-CCeEEEEeCCHHHH-HHHHHC----CC----ccc-----C-HHHHHhCCCEEEEeCC-
Confidence 577789986 5543 4454 4 78899999998775 333322 11 011 1 1101124688877522
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
.......+++++...+++|..++
T Consensus 65 ----~~~~~~~v~~~l~~~l~~~~~vv 87 (289)
T 2cvz_A 65 ----TTREVYEVAEALYPYLREGTYWV 87 (289)
T ss_dssp ----SHHHHHHHHHHHTTTCCTTEEEE
T ss_pred ----ChHHHHHHHHHHHhhCCCCCEEE
Confidence 12234466777777787775444
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=82.55 E-value=2 Score=32.41 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=50.0
Q ss_pred ccCCCcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.++..+|.=||+|. |.. +..+++. +.+|+++|.+++.+ +.+.. .+.. . ..+..+... .....|+|+
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~~~~-~~l~~----~g~~----~-~~s~~e~~~-~a~~~DvVi 86 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNVNAV-QALER----EGIA----G-ARSIEEFCA-KLVKPRVVW 86 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHT----TTCB----C-CSSHHHHHH-HSCSSCEEE
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCHHHH-HHHHH----CCCE----E-eCCHHHHHh-cCCCCCEEE
Confidence 34567888888875 443 3445444 78999999999776 33321 1220 0 000000000 012358888
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
..-.- . ....+++++...+++|..++
T Consensus 87 ~~vp~-----~-~v~~vl~~l~~~l~~g~iiI 112 (358)
T 4e21_A 87 LMVPA-----A-VVDSMLQRMTPLLAANDIVI 112 (358)
T ss_dssp ECSCG-----G-GHHHHHHHHGGGCCTTCEEE
T ss_pred EeCCH-----H-HHHHHHHHHHhhCCCCCEEE
Confidence 75322 2 45578888888888875443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.48 E-value=9.4 Score=26.23 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=39.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCc-ceeeccCCCCCCCCCCCcc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPAL-PHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fD 80 (175)
..+++++||=.|+ +|.++..+++.+ +.+|++++.++..+ +.+... .+ ..+..+..+.+...-+..|
T Consensus 17 ~~l~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~-~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~D 86 (236)
T 3e8x_A 17 LYFQGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQG-PELRER--------GASDIVVANLEEDFSHAFASID 86 (236)
T ss_dssp ----CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHT--------TCSEEEECCTTSCCGGGGTTCS
T ss_pred cCcCCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHH-HHHHhC--------CCceEEEcccHHHHHHHHcCCC
Confidence 3457888997775 455554443332 78999999998765 332211 12 2333343322221223689
Q ss_pred EEEeCCcc
Q 030558 81 LILASDIL 88 (175)
Q Consensus 81 ~i~~~~~l 88 (175)
+|+.+...
T Consensus 87 ~vi~~ag~ 94 (236)
T 3e8x_A 87 AVVFAAGS 94 (236)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 98877665
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=82.27 E-value=1.8 Score=34.04 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=29.3
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHH
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~ 43 (175)
.+.|++|.=+|.|. |......++.+|.+|+++|.++..
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~ 292 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPIC 292 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhh
Confidence 45789999999885 665555555569999999999854
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=82.27 E-value=4.9 Score=31.70 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=27.4
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHH
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
+.|++++=+|+|. |......++..|.+|+.+|+++...
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a 301 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICA 301 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 5789999999882 4444443344588999999998654
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=82.01 E-value=0.65 Score=32.86 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=24.2
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCC----cEEEEeCChHHH
Q 030558 10 RRCIELGSGT-GA-LAIFLRKAMNL----DITTSDYNDQEI 44 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~----~v~~~D~s~~~l 44 (175)
.+|.=||||. |. ++..+++. +. +|+++|.+++.+
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~-g~~~~~~V~~~~r~~~~~ 42 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK-NIVSSNQIICSDLNTANL 42 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TSSCGGGEEEECSCHHHH
T ss_pred CeEEEECccHHHHHHHHHHHhC-CCCCCCeEEEEeCCHHHH
Confidence 4677889885 43 44555554 65 899999999776
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=81.78 E-value=6.7 Score=28.15 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=48.2
Q ss_pred CCcEEEeCCCc-cH-HHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 9 RRRCIELGSGT-GA-LAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGcG~-G~-~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
-.+|.=||+|. |. ++..+++.. +.+|+++|.+++.+ +.+.. .+.. .... .+....-...|+|+..
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~-~~~~~----~g~~---~~~~----~~~~~~~~~aDvVila 73 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSR-DIALE----RGIV---DEAT----ADFKVFAALADVIILA 73 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHH-HHHHH----TTSC---SEEE----SCTTTTGGGCSEEEEC
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHH----cCCc---cccc----CCHHHhhcCCCEEEEc
Confidence 35688889886 33 344555543 56899999998765 33322 1220 0111 1111111346888775
Q ss_pred CcccCcccchHHHHHHHHHHhh-cCCCCcee
Q 030558 86 DILLYVKQYSNLIKSLSVLLKS-YKPKDSQV 115 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~-l~pgG~~~ 115 (175)
-.- .....+++++... ++++..++
T Consensus 74 vp~------~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 74 VPI------KKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp SCH------HHHHHHHHHHHTSCCCTTCEEE
T ss_pred CCH------HHHHHHHHHHHhcCCCCCCEEE
Confidence 322 2335777777777 77765443
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=81.56 E-value=2.4 Score=32.98 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=51.1
Q ss_pred CcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-CCCcce--------eeccCCCCCCCCCCC
Q 030558 10 RRCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPH--------IKHSWGDAFPIPNPD 78 (175)
Q Consensus 10 ~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~ 78 (175)
.+|.=||+|. |... ..+++. |.+|+++|.+++.+ +.++.. .... ...... -.+....+....-..
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~~~~v-~~l~~g--~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~ 78 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL-GANVRCIDTDRNKI-EQLNSG--TIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPE 78 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHHT--CSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhc-CCEEEEEECCHHHH-HHHHcC--CCcccCCCHHHHHHhhcccCcEEEECCHHHHHhc
Confidence 3677788875 4433 345444 78999999999876 443321 1100 000000 000000111100124
Q ss_pred ccEEEeCCccc----CcccchHHHHHHHHHHhhcCCCCceee
Q 030558 79 WDLILASDILL----YVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 79 fD~i~~~~~l~----~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
.|+|+.+-.-. ..++...+..+++.+.+.+++|..++.
T Consensus 79 aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~ 120 (450)
T 3gg2_A 79 ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVT 120 (450)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEE
Confidence 58777643220 112223567888899999988754443
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=81.52 E-value=6.1 Score=28.25 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=54.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---------
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 74 (175)
++++++|=.|++ |.++..+++.+ |.+|++++.++....+.....+...+. ++..+..+..+....
T Consensus 27 ~~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 27 LEGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 356778777764 44555444433 889999998864321333223332222 233344444321100
Q ss_pred CCCCccEEEeCCcccCcc-----cchHH-----------HHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVK-----QYSNL-----------IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~-----~~~~~-----------~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-+..|+++.+..+.... +.+++ ..+++.+.+.++.+|+++..
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 162 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 162 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 013679988776543221 12222 22445666667677777665
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=81.48 E-value=10 Score=26.52 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=43.8
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCCC--------
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPI-------- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 74 (175)
++++++|=.|++.|. ++..|++. |.+|+.+|.++..+++..+ ........ ..+..+..+..+....
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHD-EIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHHH-HHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-HHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 467788888876542 22344444 8899999999987633333 33222111 2233444454431110
Q ss_pred -CCCCccEEEeCCcc
Q 030558 75 -PNPDWDLILASDIL 88 (175)
Q Consensus 75 -~~~~fD~i~~~~~l 88 (175)
.-+..|+++.+..+
T Consensus 83 ~~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 83 QKYGAVDILVNAAAM 97 (250)
T ss_dssp HHHCCEEEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 11468998887655
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=81.13 E-value=1 Score=32.24 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=28.9
Q ss_pred CCCccEEEeCCcccCcc--------c----chHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVK--------Q----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~--------~----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++||+|+..... ... . ...+...++++.++|+|+|.+++.
T Consensus 21 ~~~vdlI~~DPPY-~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 21 NKSVQLAVIDPPY-NLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp TTCEEEEEECCCC-SSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCEEEECCCC-CCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4578888886654 222 0 124567888999999999988886
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=81.03 E-value=13 Score=26.49 Aligned_cols=83 Identities=14% Similarity=0.310 Sum_probs=46.8
Q ss_pred CCCccccCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC----
Q 030558 1 MHHREWIERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---- 73 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 73 (175)
|++|-.++|+++|==|++.|. .+..|++. |.+|+.+|.+... +..+ .+...+. +...+..++.+...
T Consensus 1 M~n~f~L~GKvalVTGas~GIG~aiA~~la~~-Ga~Vvi~~r~~~~--~~~~-~~~~~g~--~~~~~~~Dv~d~~~v~~~ 74 (247)
T 4hp8_A 1 MKNPFSLEGRKALVTGANTGLGQAIAVGLAAA-GAEVVCAARRAPD--ETLD-IIAKDGG--NASALLIDFADPLAAKDS 74 (247)
T ss_dssp --CTTCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCCH--HHHH-HHHHTTC--CEEEEECCTTSTTTTTTS
T ss_pred CcCCcCCCCCEEEEeCcCCHHHHHHHHHHHHc-CCEEEEEeCCcHH--HHHH-HHHHhCC--cEEEEEccCCCHHHHHHH
Confidence 566666789988888876654 22344444 8899999997632 2222 2222222 33445555543221
Q ss_pred CCCCCccEEEeCCccc
Q 030558 74 IPNPDWDLILASDILL 89 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~ 89 (175)
...+..|+.+.+.-+.
T Consensus 75 ~~~g~iDiLVNNAGi~ 90 (247)
T 4hp8_A 75 FTDAGFDILVNNAGII 90 (247)
T ss_dssp STTTCCCEEEECCCCC
T ss_pred HHhCCCCEEEECCCCC
Confidence 2345789988876543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=81.01 E-value=1.2 Score=33.91 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+.+||.++-+-|.++..++. ..+++.+.-|-... .. .+.+++.. .. ..........||+|+.-
T Consensus 46 ~~~~l~~n~~~g~~~~~~~~--~~~~~~~~~~~~~~-~~----l~~~~~~~--~~-----~~~~~~~~~~~d~v~~~--- 108 (381)
T 3dmg_A 46 GERALDLNPGVGWGSLPLEG--RMAVERLETSRAAF-RC----LTASGLQA--RL-----ALPWEAAAGAYDLVVLA--- 108 (381)
T ss_dssp SSEEEESSCTTSTTTGGGBT--TBEEEEEECBHHHH-HH----HHHTTCCC--EE-----CCGGGSCTTCEEEEEEE---
T ss_pred CCcEEEecCCCCccccccCC--CCceEEEeCcHHHH-HH----HHHcCCCc--cc-----cCCccCCcCCCCEEEEE---
Confidence 46899999999987766632 35677764444332 23 44555521 11 11122235689998873
Q ss_pred cCcc---cchHHHHHHHHHHhhcCCCCceeec
Q 030558 89 LYVK---QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 89 ~~~~---~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++ ........+.++.+.++|||.+++.
T Consensus 109 --~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~ 138 (381)
T 3dmg_A 109 --LPAGRGTAYVQASLVAAARALRMGGRLYLA 138 (381)
T ss_dssp --CCGGGCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCcchhHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 23 2234668889999999999998877
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=80.83 E-value=10 Score=29.43 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=52.8
Q ss_pred ccCCCcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCccee--------eccCCCCCCCC
Q 030558 6 WIERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI--------KHSWGDAFPIP 75 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 75 (175)
..-|.++-=||.|. |... ..|++. |.+|+++|++++.+ +.++... ..-.......+ .+....+.
T Consensus 8 ~~~~~~~~ViGlGyvGlp~A~~La~~-G~~V~~~D~~~~kv-~~L~~g~-~pi~epgl~~ll~~~~~~g~l~~ttd~--- 81 (431)
T 3ojo_A 8 HHHGSKLTVVGLGYIGLPTSIMFAKH-GVDVLGVDINQQTI-DKLQNGQ-ISIEEPGLQEVYEEVLSSGKLKVSTTP--- 81 (431)
T ss_dssp ----CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESSC---
T ss_pred cccCCccEEEeeCHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHCCC-CCcCCCCHHHHHHhhcccCceEEeCch---
Confidence 34566777788885 6655 445554 88999999999887 4433210 00000000000 00001111
Q ss_pred CCCccEEEeCCcc-c-----CcccchHHHHHHHHHHhhcCCCCceee
Q 030558 76 NPDWDLILASDIL-L-----YVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 76 ~~~fD~i~~~~~l-~-----~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
..-|+|+.+-.. . ..++...+..+.+.+.+.++||..++.
T Consensus 82 -~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~ 127 (431)
T 3ojo_A 82 -EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIV 127 (431)
T ss_dssp -CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEE
T ss_pred -hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEE
Confidence 235776654221 1 122344566778888889998764443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=80.53 E-value=14 Score=26.64 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=57.8
Q ss_pred ccCCCcEEEeCCCcc----H-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC------
Q 030558 6 WIERRRCIELGSGTG----A-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------ 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G----~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (175)
.++++++|=.|++.| . ++..+++. |.+|+.++.++... +.++......+ .+..+..+..+....
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~-G~~V~~~~r~~~~~-~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREA-GAELAFTYQGDALK-KRVEPLAEELG---AFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHT-TCEEEEEECSHHHH-HHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHHH-HHHHHHHHhcC---CceEEECCCCCHHHHHHHHHH
Confidence 357888998887633 2 33445554 88999999987543 33332222211 123444444432110
Q ss_pred ---CCCCccEEEeCCcccC---------cccchHH-----------HHHHHHHHhhcCCCCceeec
Q 030558 75 ---PNPDWDLILASDILLY---------VKQYSNL-----------IKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ---~~~~fD~i~~~~~l~~---------~~~~~~~-----------~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-+..|+++.+..+.. ..+.+++ ..+++.+.+.++++|+++..
T Consensus 103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~i 168 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTL 168 (293)
T ss_dssp HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1246899888766532 1112222 23455666777778877665
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=80.40 E-value=3.4 Score=32.69 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=54.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...|++|+=+|+|. |......++..|.+|+++|.++... +.+. ..+. ..+ +..+. -...|+|+.
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~-~~A~----~~Ga----~~~--~l~e~----l~~aDvVi~ 335 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINA-LQAM----MEGF----DVV--TVEEA----IGDADIVVT 335 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH-HHHH----HTTC----EEC--CHHHH----GGGCSEEEE
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHH----HcCC----EEe--cHHHH----HhCCCEEEE
Confidence 45789999999985 7777777777788999999998664 2222 1122 111 11011 135798887
Q ss_pred CCcccCcccchHHHHHH-HHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l-~~l~~~l~pgG~~~~~ 117 (175)
+--- . .++ .+..+.++|||+++.+
T Consensus 336 atgt---~------~~i~~~~l~~mk~ggilvnv 360 (494)
T 3ce6_A 336 ATGN---K------DIIMLEHIKAMKDHAILGNI 360 (494)
T ss_dssp CSSS---S------CSBCHHHHHHSCTTCEEEEC
T ss_pred CCCC---H------HHHHHHHHHhcCCCcEEEEe
Confidence 5322 1 112 3566778999977655
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.14 E-value=3.5 Score=30.53 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=50.5
Q ss_pred CcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh--CCCCCCcc-eeecc-CCCCCCCCCCCccEEE
Q 030558 10 RRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT--NGITPALP-HIKHS-WGDAFPIPNPDWDLIL 83 (175)
Q Consensus 10 ~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~--~~~~~~~~-~~~~~-~~~~~~~~~~~fD~i~ 83 (175)
.+|.=||+|. |.. +..+++. +.+|+++|.+++.+ +.++..... .+. ... ..... ..++....-...|+|+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~vi 80 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDAQRI-KEIQDRGAIIAEGP--GLAGTAHPDLLTSDIGLAVKDADVIL 80 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHTSEEEESS--SCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHH-HHHHhcCCeEEecc--ccccccccceecCCHHHHHhcCCEEE
Confidence 5788899986 433 3445444 77899999998776 443322110 000 000 00000 0011110013579888
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..--- . ....+++++...++++..++..
T Consensus 81 ~~v~~---~---~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 81 IVVPA---I---HHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp ECSCG---G---GHHHHHHHHGGGCCTTCEEEES
T ss_pred EeCCc---h---HHHHHHHHHHHhCCCCCEEEEc
Confidence 75332 1 2247788888888887644433
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=80.14 E-value=3.6 Score=30.14 Aligned_cols=97 Identities=15% Similarity=0.046 Sum_probs=49.8
Q ss_pred CcEEEeCCCc-cH-HHHHHHHhCCCcEEEEeCChHHHHHHHHHHH-hhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 10 RRCIELGSGT-GA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNS-TTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 10 ~~vLDlGcG~-G~-~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+|+=||+|. |. ++..|++. +.+|+.++.++ . +.+++.. .................+... ....+|+|+..-
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~--~-~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~vilav 77 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS-GEDVHFLLRRD--Y-EAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDLVLVGL 77 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT-SCCEEEECSTT--H-HHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCc--H-HHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCEEEEec
Confidence 4688889996 44 44556554 78899999976 2 3333211 000000000000000001111 123689988753
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-- . ++..+++++...++|+..++..
T Consensus 78 k~---~---~~~~~l~~l~~~l~~~~~iv~l 102 (312)
T 3hn2_A 78 KT---F---ANSRYEELIRPLVEEGTQILTL 102 (312)
T ss_dssp CG---G---GGGGHHHHHGGGCCTTCEEEEC
T ss_pred CC---C---CcHHHHHHHHhhcCCCCEEEEe
Confidence 32 2 2237788888888888765554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 175 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.91 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.91 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.9 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.87 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.87 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.86 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.86 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.85 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.85 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.85 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.84 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.83 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.83 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.82 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.81 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.81 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.8 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.79 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.77 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.76 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.76 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.74 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.74 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.73 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.71 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.7 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.69 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.68 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.67 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.67 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.66 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.65 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.65 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.63 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.62 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.59 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.59 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.59 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.58 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.54 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.53 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.52 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.51 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.49 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.48 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.48 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.48 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.48 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.47 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.46 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.45 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.4 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.36 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.35 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.34 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.34 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.33 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.33 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.3 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.29 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.25 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.2 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.15 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.14 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.14 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.05 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.0 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.92 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.87 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.83 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.76 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.76 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.69 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.56 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.55 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.55 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.55 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.54 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.49 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.44 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.42 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.41 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.34 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.34 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.28 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.24 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.16 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.15 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.08 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.06 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.92 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.92 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.86 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.81 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.68 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.57 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.57 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.51 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.48 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.47 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.42 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.34 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.32 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.29 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.17 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.1 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.02 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.0 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.9 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.89 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.89 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.66 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.53 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.52 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.45 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.37 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.35 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.1 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.08 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.91 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.86 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.83 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.79 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.76 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.75 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.31 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 95.29 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.16 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.11 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.93 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.92 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.41 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.96 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.89 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.71 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.67 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 91.86 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 90.92 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 90.59 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.58 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.41 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 90.28 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 90.12 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.09 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 89.83 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.39 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 89.34 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.25 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.23 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.04 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.9 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 88.8 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.78 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 88.19 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.85 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 87.62 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 87.43 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 86.27 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 86.2 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 86.2 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 85.15 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 84.37 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 84.24 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 84.21 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 83.91 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 83.82 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.7 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 83.19 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 82.76 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.69 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 82.28 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 82.03 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.25 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.99 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 80.88 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.45 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=2.8e-25 Score=158.72 Aligned_cols=160 Identities=11% Similarity=0.102 Sum_probs=110.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
.++.+|.||||||||+|.++..+++. +.+|+|+|+|+.|+ +.++++....+. .++..+..+. ..+++++++||+|+
T Consensus 12 ~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l-~~A~~~~~~~~~-~~~~~~~~d~-~~~~~~~~~fD~v~ 87 (234)
T d1xxla_ 12 AECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMV-EVASSFAQEKGV-ENVRFQQGTA-ESLPFPDDSFDIIT 87 (234)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHHTC-CSEEEEECBT-TBCCSCTTCEEEEE
T ss_pred hCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhh-hhhhhhhccccc-cccccccccc-ccccccccccceee
Confidence 45678999999999999999999887 68999999999998 667666666555 2333433333 34678889999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCC-ceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWP-AFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
+..++++.. ++..+++++.++|||||.+++......... ..+..... .+...+.+. .+...+.++++++||
T Consensus 88 ~~~~l~~~~---d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gf 161 (234)
T d1xxla_ 88 CRYAAHHFS---DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRE---SSLSEWQAMFSANQL 161 (234)
T ss_dssp EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCC---CBHHHHHHHHHHTTE
T ss_pred eeceeeccc---CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCccccc---CCHHHHHHHHHHCCC
Confidence 999995544 456999999999999999988643321111 00000000 000001111 134778899999999
Q ss_pred eeEEecceEEEEe
Q 030558 161 EVKHLGSRVYCIK 173 (175)
Q Consensus 161 ~~~~~~~~~~~i~ 173 (175)
.+..+....+..+
T Consensus 162 ~~~~~~~~~~~~~ 174 (234)
T d1xxla_ 162 AYQDIQKWNLPIQ 174 (234)
T ss_dssp EEEEEEEEEEEEE
T ss_pred ceeEEEEeeCccC
Confidence 9988877666553
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.91 E-value=7.6e-25 Score=155.91 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=106.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|+ +.++.+....+. .++..+..+. ..+++++++||+|++
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i-~~A~~~~~~~~~-~~i~~~~~d~-~~l~~~~~~fD~v~~ 87 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDIL-KVARAFIEGNGH-QQVEYVQGDA-EQMPFTDERFHIVTC 87 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHTTC-CSEEEEECCC--CCCSCTTCEEEEEE
T ss_pred CCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHH-hhhhhccccccc-cccccccccc-ccccccccccccccc
Confidence 4567899999999999999999887 78999999999998 777777666555 3344444433 345677899999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCC-ceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWP-AFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
..+++|.. ++..+++++.++|||||++++......... ........ .....+.+.+ +..++.+.++++||+
T Consensus 88 ~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~aGf~ 161 (231)
T d1vl5a_ 88 RIAAHHFP---NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAW---KKSDWLKMLEEAGFE 161 (231)
T ss_dssp ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCC---BHHHHHHHHHHHTCE
T ss_pred cccccccC---CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCC---CHHHHHHHHHHCCCE
Confidence 99996555 455999999999999999998643322111 00000000 0000011112 247888999999999
Q ss_pred eEEecce
Q 030558 162 VKHLGSR 168 (175)
Q Consensus 162 ~~~~~~~ 168 (175)
++++...
T Consensus 162 ~~~~~~~ 168 (231)
T d1vl5a_ 162 LEELHCF 168 (231)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8776543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.90 E-value=5.3e-24 Score=155.98 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=109.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.|+ +.++++....++..++..+..+.. .+++++++||+|++
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i-~~a~~~~~~~gl~~~v~~~~~d~~-~l~~~~~sfD~V~~ 141 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQN-KRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWS 141 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhh-hhhhcccccccccccccccccccc-cccccccccchhhc
Confidence 4567899999999999999999987788999999999998 666666666666555555554443 45778899999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..+++|.++ +..+++++.++|||||++++...........- ....+...+ ......+...+.++++++||+...
T Consensus 142 ~~~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~s~~~~~~~l~~~Gf~~i~ 215 (282)
T d2o57a1 142 QDAFLHSPD---KLKVFQECARVLKPRGVMAITDPMKEDGIDKS--SIQPILDRI-KLHDMGSLGLYRSLAKECGLVTLR 215 (282)
T ss_dssp ESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG--GGHHHHHHH-TCSSCCCHHHHHHHHHHTTEEEEE
T ss_pred cchhhhccC---HHHHHHHHHHhcCCCcEEEEEEeecCCCCchh--HHHHHHHHh-ccCCCCCHHHHHHHHHHcCCceEE
Confidence 999966654 45999999999999999998744332211100 000011000 011112357888999999998766
Q ss_pred ecc
Q 030558 165 LGS 167 (175)
Q Consensus 165 ~~~ 167 (175)
+.+
T Consensus 216 ~~d 218 (282)
T d2o57a1 216 TFS 218 (282)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.4e-24 Score=152.61 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=108.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
.+.+|++|||||||+|..+..+++..+.+|+|+|+|+.|+ +.++++....++..++..+..+..+. ..+++||+|++
T Consensus 30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~-~~ar~~~~~~gl~~~v~~~~~d~~~~--~~~~~fD~v~~ 106 (245)
T d1nkva_ 30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT-AQAKRRAEELGVSERVHFIHNDAAGY--VANEKCDVAAC 106 (245)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEESCCTTC--CCSSCEEEEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchh-hHHHHHHHHhhccccchhhhhHHhhc--cccCceeEEEE
Confidence 4667999999999999999999887788999999999998 77787888877765566665555443 35789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCC--CCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG--TEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
..+++|..+.+ .+++++.++|||||++++..+....... .... .+.. .......+...+...++++||++
T Consensus 107 ~~~~~~~~d~~---~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~aG~~~ 178 (245)
T d1nkva_ 107 VGATWIAGGFA---GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ---ACGV--SSTSDFLTLPGLVGAFDDLGYDV 178 (245)
T ss_dssp ESCGGGTSSSH---HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH---TTTC--SCGGGSCCHHHHHHHHHTTTBCC
T ss_pred EehhhccCCHH---HHHHHHHHHcCcCcEEEEEeccccCCCChHHHHH---Hhcc--CCCcccCCHHHHHHHHHHcCCEE
Confidence 99997776544 9999999999999999997443222110 0000 0000 00111113477889999999986
Q ss_pred EEe
Q 030558 163 KHL 165 (175)
Q Consensus 163 ~~~ 165 (175)
...
T Consensus 179 v~~ 181 (245)
T d1nkva_ 179 VEM 181 (245)
T ss_dssp CEE
T ss_pred EEE
Confidence 543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.8e-22 Score=141.29 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=102.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~ 83 (175)
..++.+|||||||+|.++..+++..+.+|+|+|+|+.|+ +.++.+....+. ..+.+..++ .+++++++||+|+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l-~~ak~~~~~~~~----~~~~f~~~d~~~~~~~~~~fD~I~ 132 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGK----RVRNYFCCGLQDFTPEPDSYDVIW 132 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH-HHHHHHTGGGGG----GEEEEEECCGGGCCCCSSCEEEEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHh-hccccccccccc----cccccccccccccccccccccccc
Confidence 445788999999999999998776677899999999998 666666555433 233333333 3456678999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeE
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 163 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (175)
+..+++|.. .+++.++++++.++|+|||.+++......... ......... ..+.+.+.++++++||++.
T Consensus 133 ~~~~l~h~~-~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 133 IQWVIGHLT-DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV---------ILDDVDSSV-CRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp EESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE---------EEETTTTEE-EEBHHHHHHHHHHTTCCEE
T ss_pred cccccccch-hhhhhhHHHHHHHhcCCcceEEEEEccccccc---------ccccCCcee-eCCHHHHHHHHHHcCCEEE
Confidence 999996655 45677899999999999999988743221111 000000000 1135889999999999977
Q ss_pred Eec
Q 030558 164 HLG 166 (175)
Q Consensus 164 ~~~ 166 (175)
+..
T Consensus 202 ~~~ 204 (222)
T d2ex4a1 202 AEE 204 (222)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.87 E-value=5.6e-22 Score=142.35 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=81.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC-
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS- 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~- 85 (175)
.++++|||+|||+|.++..+++. +.+|+|+|+|+.|+ +.++++....+. .+..+..+..+ ++ .+++||+|++.
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml-~~A~~~~~~~~~--~v~~~~~d~~~-~~-~~~~fD~i~~~~ 109 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEML-SEAENKFRSQGL--KPRLACQDISN-LN-INRKFDLITCCL 109 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHH-HHHHHHHHHTTC--CCEEECCCGGG-CC-CSCCEEEEEECT
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhh-hhccccccccCc--cceeeccchhh-hc-ccccccccceee
Confidence 45689999999999999999887 78999999999998 666666555544 23333322221 22 25689999975
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+++++..+.+++.++++++++.|+|||.+++.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 66767777888999999999999999998875
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=1.3e-21 Score=138.21 Aligned_cols=107 Identities=13% Similarity=0.259 Sum_probs=84.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|+ +.++++....+. .+..+..+ ...+++.+++||+|++..
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i-~~ak~~~~~~~~--~~~~~~~d-~~~l~~~~~~fD~I~~~~ 110 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMI-RKAREYAKSRES--NVEFIVGD-ARKLSFEDKTFDYVIFID 110 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEECC-TTSCCSCTTCEEEEEEES
T ss_pred CCCCEEEEECCCcchhhhhHhhh-hcccccccccccch-hhhhhhhccccc--cccccccc-cccccccCcCceEEEEec
Confidence 46789999999999999999886 78999999999998 677666655444 22333322 234677889999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++.|.+ ..++.++++++.++|||||++++...
T Consensus 111 ~l~~~~-~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 111 SIVHFE-PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CGGGCC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhCC-hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 996654 45778999999999999999888743
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.86 E-value=7e-22 Score=140.17 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=99.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..++++|||||||+|.++..+++. +.+|+|+|+|+.++ +.++++... .+..+..+.. ..+ .+++||+|++.
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i-~~a~~~~~~-----~~~~~~~~~~-~~~-~~~~fD~I~~~ 88 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAI-SHAQGRLKD-----GITYIHSRFE-DAQ-LPRRYDNIVLT 88 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHH-HHHHHHSCS-----CEEEEESCGG-GCC-CSSCEEEEEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHh-hhhhccccc-----cccccccccc-ccc-ccccccccccc
Confidence 356889999999999999999876 78999999999998 666654321 2233332222 233 35799999999
Q ss_pred CcccCcccchHHHHHHHHHH-hhcCCCCceeeccccCCCCC------CCCCCCCC-----ceEeeeeccCCCcchhHHHH
Q 030558 86 DILLYVKQYSNLIKSLSVLL-KSYKPKDSQVGHLTKNEQGE------GTEGLPWP-----AFLMSWRRRIGKEDETIFFT 153 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~-~~l~pgG~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 153 (175)
+++.|.. +...+++++. ++|+|||.+++.++...... ........ .....+.+.+. .+.+.+
T Consensus 89 ~vleh~~---d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~---~~~l~~ 162 (225)
T d2p7ia1 89 HVLEHID---DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYA---LDTLER 162 (225)
T ss_dssp SCGGGCS---SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCC---HHHHHH
T ss_pred ceeEecC---CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccC---HHHHHH
Confidence 9996554 4559999998 79999999999866533211 00100000 11111223333 488999
Q ss_pred HHHHcCCeeEEecc
Q 030558 154 SCENAGLEVKHLGS 167 (175)
Q Consensus 154 ~~~~~g~~~~~~~~ 167 (175)
+++++||++.+.+.
T Consensus 163 ~l~~~Gf~i~~~~~ 176 (225)
T d2p7ia1 163 DASRAGLQVTYRSG 176 (225)
T ss_dssp HHHHTTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999877553
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=1.9e-21 Score=137.82 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=84.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHh---CCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
..++.+|||||||+|..+..+++. .+.+|+|+|+|+.|+ +.++++....... ..+.....+..+++.+.+|+|
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml-~~A~~~~~~~~~~---~~~~~~~~d~~~~~~~~~d~i 112 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSE---IPVEILCNDIRHVEIKNASMV 112 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHH-HHHHHHHHTSCCS---SCEEEECSCTTTCCCCSEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHH-HHHHHHhHhhccc---chhhhccchhhccccccceee
Confidence 456889999999999999999874 367899999999999 6766666554442 233334455566667789999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+++.++++ ...++...++++++++|||||.+++..
T Consensus 113 ~~~~~l~~-~~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 113 ILNFTLQF-LPPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp EEESCGGG-SCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeeeccc-cChhhHHHHHHHHHHhCCCCceeeccc
Confidence 99999844 456778899999999999999999873
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=1.2e-21 Score=142.97 Aligned_cols=159 Identities=8% Similarity=-0.004 Sum_probs=108.2
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...+.+|.+|||||||+|.++..+++..+++|+|+|+|++++ +.+++.....++...+.... .+ ....+++||.|
T Consensus 47 ~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~-~~a~~~~~~~~l~~~~~~~~---~d-~~~~~~~fD~i 121 (280)
T d2fk8a1 47 KLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQH-ARCEQVLASIDTNRSRQVLL---QG-WEDFAEPVDRI 121 (280)
T ss_dssp TSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTSCCSSCEEEEE---SC-GGGCCCCCSEE
T ss_pred HcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHH-HHHHHHHHhhccccchhhhh---hh-hhhhccchhhh
Confidence 345678999999999999999999988799999999999998 77777777777643333322 22 22335789999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCC---------CCCCceEeeee-ccCCCcchhHHH
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG---------LPWPAFLMSWR-RRIGKEDETIFF 152 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~ 152 (175)
++..++.|.. ..+...+++++.++|||||++++............. .....|+..+. +.....+...+.
T Consensus 122 ~si~~~eh~~-~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~ 200 (280)
T d2fk8a1 122 VSIEAFEHFG-HENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMV 200 (280)
T ss_dssp EEESCGGGTC-GGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred hHhhHHHHhh-hhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhh
Confidence 9999996655 456779999999999999999986322211100000 00001111111 111122357888
Q ss_pred HHHHHcCCeeEEecc
Q 030558 153 TSCENAGLEVKHLGS 167 (175)
Q Consensus 153 ~~~~~~g~~~~~~~~ 167 (175)
+.++++||++.++.+
T Consensus 201 ~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 201 EHGEKAGFTVPEPLS 215 (280)
T ss_dssp HHHHHTTCBCCCCEE
T ss_pred hhHHhhccccceeee
Confidence 999999999887654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=2.6e-21 Score=141.60 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=109.5
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+.+|.+|||||||.|.+++++|+..+++|+|+++|++++ +.++......++... +.+...+ .++.+++||.|+
T Consensus 57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~-~~a~~~~~~~~l~~~---v~~~~~d-~~~~~~~fD~i~ 131 (291)
T d1kpia_ 57 LNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQY-AHDKAMFDEVDSPRR---KEVRIQG-WEEFDEPVDRIV 131 (291)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHSCCSSC---EEEEECC-GGGCCCCCSEEE
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHH-HHHHHHHHhhccchh---hhhhhhc-ccccccccceEe
Confidence 45678999999999999999999988899999999999997 677767776666433 3333333 345578999999
Q ss_pred eCCcccCcccc------hHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCC-------ceEeeee-ccCCCcc
Q 030558 84 ASDILLYVKQY------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWP-------AFLMSWR-RRIGKED 147 (175)
Q Consensus 84 ~~~~l~~~~~~------~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~-~~~~~~~ 147 (175)
+..++.|..+. ++...+++++.++|||||++++.+....+.. .+.....+ .|+..+. +.-...+
T Consensus 132 sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps 211 (291)
T d1kpia_ 132 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPR 211 (291)
T ss_dssp EESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCC
T ss_pred echhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCC
Confidence 99999776542 4567999999999999999998744332211 00000011 1221111 1111123
Q ss_pred hhHHHHHHHHcCCeeEEec
Q 030558 148 ETIFFTSCENAGLEVKHLG 166 (175)
Q Consensus 148 ~~~~~~~~~~~g~~~~~~~ 166 (175)
...+...++++||+++++.
T Consensus 212 ~~~~~~~~e~~gl~v~~~~ 230 (291)
T d1kpia_ 212 ISQVDYYSSNAGWKVERYH 230 (291)
T ss_dssp HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHhhhcccccccceee
Confidence 5788889999999988764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.85 E-value=2.6e-21 Score=139.54 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=97.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC--CCCCCCCCCccEEEe
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAFPIPNPDWDLILA 84 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~i~~ 84 (175)
.++.+|||+|||+|.++..++.....+|+++|+|+.|+ +.++++... . +.+.+..+ ..+++++++||+|++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l-~~a~~~~~~--~----~~~~~~~~d~~~~~~~~~~fD~I~~ 164 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAG--M----PVGKFILASMETATLPPNTYDLIVI 164 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHH-HHHHHHTTT--S----SEEEEEESCGGGCCCCSSCEEEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHH-Hhhhccccc--c----ccceeEEccccccccCCCccceEEe
Confidence 35679999999999999988776567899999999998 565544332 1 22333332 345566789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
..+++|.. .+++.++++++.+.|+|||.+++................+.+ ..+.+.+.++++++||++.+
T Consensus 165 ~~vl~hl~-d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~---------~rs~~~~~~l~~~aGf~ii~ 234 (254)
T d1xtpa_ 165 QWTAIYLT-DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSL---------TRSDIHYKRLFNESGVRVVK 234 (254)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEE---------EBCHHHHHHHHHHHTCCEEE
T ss_pred eccccccc-hhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCce---------eCCHHHHHHHHHHcCCEEEE
Confidence 99996665 456779999999999999999886433221110000000101 11357899999999998765
Q ss_pred e
Q 030558 165 L 165 (175)
Q Consensus 165 ~ 165 (175)
.
T Consensus 235 ~ 235 (254)
T d1xtpa_ 235 E 235 (254)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.84 E-value=2.7e-20 Score=133.98 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=81.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||||||+|..+..+++....+|+|+|+|+.|+ +.++......+....+.....+.........++||+|++..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l-~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI-NDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHH-HHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 46889999999999999999887556899999999999 55554444433322222333222222222456899999999
Q ss_pred cccCccc-chHHHHHHHHHHhhcCCCCceeeccc
Q 030558 87 ILLYVKQ-YSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 87 ~l~~~~~-~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+++|... .+++..+++++.++|||||.++++++
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9866543 35677999999999999999988643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=3.6e-21 Score=134.76 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=93.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++.+|||||||+|.++..++ +++|+|+|+.|+ +.++++ +. ..+. .....+++.+++||+|++..
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~-~~a~~~----~~----~~~~-~d~~~l~~~~~~fD~I~~~~ 99 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMA-EIARKR----GV----FVLK-GTAENLPLKDESFDFALMVT 99 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHH-HHHHHT----TC----EEEE-CBTTBCCSCTTCEEEEEEES
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhc-cccccc----cc----cccc-cccccccccccccccccccc
Confidence 456789999999999887762 478999999998 554432 12 2222 22345677889999999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCC--CCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEE
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG--LPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 164 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (175)
+++|.. ++..+++++.++|+|||.+++..+.......... ...........+.+ +.+++.++++++||++.+
T Consensus 100 ~l~h~~---d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 100 TICFVD---DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFF---STEELMDLMRKAGFEEFK 173 (208)
T ss_dssp CGGGSS---CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCC---CHHHHHHHHHHTTCEEEE
T ss_pred cccccc---ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCC---CHHHHHHHHHHcCCeEEE
Confidence 996665 4559999999999999999998655432110000 00000011111112 347899999999998776
Q ss_pred ecc
Q 030558 165 LGS 167 (175)
Q Consensus 165 ~~~ 167 (175)
+..
T Consensus 174 v~~ 176 (208)
T d1vlma_ 174 VVQ 176 (208)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5.3e-21 Score=137.80 Aligned_cols=149 Identities=16% Similarity=0.121 Sum_probs=99.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcc-----------------------
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALP----------------------- 62 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~----------------------- 62 (175)
..+|++|||||||+|.++..+++..+.+|+|+|+|+.|+ +.++++...........
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR-EELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH-HHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHH-HHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 346789999999999999888776556799999999998 77776665443311000
Q ss_pred ------eeeccC-C--CCCCCCCCCccEEEeCCcccCccc-chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCC
Q 030558 63 ------HIKHSW-G--DAFPIPNPDWDLILASDILLYVKQ-YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPW 132 (175)
Q Consensus 63 ------~~~~~~-~--~~~~~~~~~fD~i~~~~~l~~~~~-~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~ 132 (175)
...... . ...++..++||+|++..++.+... .+++..++++++++|||||.+++........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~-------- 199 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 199 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc--------
Confidence 000000 1 122456779999999999855532 2467799999999999999998874432111
Q ss_pred CceEee-eeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 133 PAFLMS-WRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 133 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
+... ........+..++.+.++++||+++++
T Consensus 200 --~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 200 --YMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp --EEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --ceeccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 0000 000011124589999999999998777
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=1.6e-20 Score=130.53 Aligned_cols=107 Identities=17% Similarity=0.340 Sum_probs=84.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~ 84 (175)
..++++|||||||+|..+..++++ +.+|+|+|+|+.|+ +.++++....+. +.+.+...+... ..+++||+|++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l-~~a~~~~~~~~~----~~~~~~~~d~~~~~~~~~fD~I~~ 101 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASM-ANLERIKAAEGL----DNLQTDLVDLNTLTFDGEYDFILS 101 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC----TTEEEEECCTTTCCCCCCEEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHH-HHHHHHhhhccc----cchhhhheecccccccccccEEEE
Confidence 446779999999999999999887 88999999999998 677766666555 334444433322 24679999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
..+++|.+ .++..+++++++++|+|||.+++...
T Consensus 102 ~~~~~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 102 TVVMMFLE-AQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp ESCGGGSC-TTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeeecCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99985553 56778999999999999999888643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=3.9e-20 Score=134.95 Aligned_cols=158 Identities=9% Similarity=0.039 Sum_probs=107.6
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..+.+|.+|||||||.|.+++++|+..+++|+|+++|+.++ +.+++.....+....+.. ...+.. ..+++||.|+
T Consensus 58 l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~-~~a~~~~~~~g~~~~v~~---~~~d~~-~~~~~fD~i~ 132 (285)
T d1kpga_ 58 LGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQA-NHVQQLVANSENLRSKRV---LLAGWE-QFDEPVDRIV 132 (285)
T ss_dssp TTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHTCCCCSCEEE---EESCGG-GCCCCCSEEE
T ss_pred cCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHH-HHHHHHHHhhhhhhhhHH---HHhhhh-ccccccccee
Confidence 45678999999999999999999998899999999999998 777777666666443333 333322 2247899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCC-------ceEeeee-ccCCCcchhHHHH
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWP-------AFLMSWR-RRIGKEDETIFFT 153 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~ 153 (175)
+..++.|.. ..+...+++++.++|||||++++......... .+...+.+ .|...+. +.-...+...+..
T Consensus 133 si~~~eh~~-~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~ 211 (285)
T d1kpga_ 133 SIGAFEHFG-HERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQE 211 (285)
T ss_dssp EESCGGGTC-TTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred eehhhhhcC-chhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHH
Confidence 999996654 34566999999999999999998633221110 00000000 1111110 1101123578888
Q ss_pred HHHHcCCeeEEecc
Q 030558 154 SCENAGLEVKHLGS 167 (175)
Q Consensus 154 ~~~~~g~~~~~~~~ 167 (175)
.++++||+++++.+
T Consensus 212 ~~e~agf~v~~~~~ 225 (285)
T d1kpga_ 212 CASANGFTVTRVQS 225 (285)
T ss_dssp HHHTTTCEEEEEEE
T ss_pred HHHHhchhhccccc
Confidence 99999999987743
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=2.8e-20 Score=133.51 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=80.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC-
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS- 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~- 85 (175)
.++++|||||||+|..+..+++. +.+|+|+|+|+.|+ +.++++....+. ++.....+. ..++++ ++||+|++.
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi-~~a~~~~~~~~~--~i~~~~~d~-~~l~~~-~~fD~I~~~~ 113 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEML-RVARRKAKERNL--KIEFLQGDV-LEIAFK-NEFDAVTMFF 113 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CCEEEESCG-GGCCCC-SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccc-cccccccccccc--cchheehhh-hhcccc-cccchHhhhh
Confidence 35678999999999999999887 78999999999998 777777766555 233333332 233443 589999986
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.++ ++.+.+++..+|++++++|||||.+++.
T Consensus 114 ~~~-~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 114 STI-MYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SGG-GGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhh-hcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 455 4455678889999999999999999885
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=1.4e-20 Score=134.56 Aligned_cols=99 Identities=21% Similarity=0.419 Sum_probs=76.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC-
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS- 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~- 85 (175)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|+ +.++.+... ..+.. ....+++++++||+|++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l-~~a~~~~~~-------~~~~~-~~~~l~~~~~~fD~ii~~~ 110 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEML-EVAREKGVK-------NVVEA-KAEDLPFPSGAFEAVLALG 110 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHH-HHHHHHTCS-------CEEEC-CTTSCCSCTTCEEEEEECS
T ss_pred CCCCEEEEECCCCchhccccccc-ceEEEEeecccccc-ccccccccc-------ccccc-cccccccccccccceeeec
Confidence 36789999999999999999887 78999999999998 666654221 12222 234567888999999985
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
++++|.+ +...+++++.++|||||.+++..
T Consensus 111 ~~~~~~~---d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 111 DVLSYVE---NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp SHHHHCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhhh---hHHHHHHHHHhhcCcCcEEEEEE
Confidence 5774444 44589999999999999998863
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=5.5e-20 Score=132.05 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=97.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+|++|||+|||+|.+++.+++. +.+|+|+|+|+.++ +.+++|...++... ..+..+..+ ..+.++||+|+++
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av-~~A~~na~~n~~~~--~~~~~d~~~--~~~~~~fD~V~an 191 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVL-PQAEANAKRNGVRP--RFLEGSLEA--ALPFGPFDLLVAN 191 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGH-HHHHHHHHHTTCCC--EEEESCHHH--HGGGCCEEEEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHH-HHHHHHHHHcCCce--eEEeccccc--cccccccchhhhc
Confidence 357899999999999999998776 78999999999998 88888999888732 222222211 2345789999987
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
-.. ..+..+++++.++|||||+++++ .++ ......+.+.++++||++.+.
T Consensus 192 i~~------~~l~~l~~~~~~~LkpGG~lilS----------------gil--------~~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 192 LYA------ELHAALAPRYREALVPGGRALLT----------------GIL--------KDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp CCH------HHHHHHHHHHHHHEEEEEEEEEE----------------EEE--------GGGHHHHHHHHHHTTCEEEEE
T ss_pred ccc------ccHHHHHHHHHHhcCCCcEEEEE----------------ecc--------hhhHHHHHHHHHHCCCEEEEE
Confidence 433 23558889999999999988874 111 112477888999999986555
Q ss_pred ---cceEEEEecC
Q 030558 166 ---GSRVYCIKLR 175 (175)
Q Consensus 166 ---~~~~~~i~~~ 175 (175)
++++-++.+|
T Consensus 242 ~~~~~Wv~l~~~r 254 (254)
T d2nxca1 242 AAEGEWVLLAYGR 254 (254)
T ss_dssp EEETTEEEEEEEC
T ss_pred EEECCEEEEEEeC
Confidence 3555444444
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.80 E-value=8.1e-20 Score=131.56 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=103.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..+.++|||||||+|.++..+++.. +.+++++|+ +.++ +.++++....+...++..+..+. ......+||+|++
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAIIL 152 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEEEE
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHH-HHHHHHHHHhhcccchhhccccc---hhhcccchhheee
Confidence 3456899999999999999999875 567999998 5576 67777777766655555555443 3333467999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCC--CCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
..+++++. .++...+|++++++|||||++++......... ................ -...+.+++.++++++||++
T Consensus 153 ~~vlh~~~-d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~-g~~rt~~e~~~ll~~AGf~~ 230 (253)
T d1tw3a2 153 SFVLLNWP-DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLG-GALRTREKWDGLAASAGLVV 230 (253)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHS-CCCCBHHHHHHHHHHTTEEE
T ss_pred ccccccCC-chhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCC-CcCCCHHHHHHHHHHCCCeE
Confidence 99996654 45667899999999999999998743221111 0000000000000000 01124689999999999998
Q ss_pred EEecc
Q 030558 163 KHLGS 167 (175)
Q Consensus 163 ~~~~~ 167 (175)
+++..
T Consensus 231 ~~v~~ 235 (253)
T d1tw3a2 231 EEVRQ 235 (253)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=4e-19 Score=126.12 Aligned_cols=112 Identities=7% Similarity=-0.043 Sum_probs=80.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-------------CCcceeeccCCC--
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-------------PALPHIKHSWGD-- 70 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-- 70 (175)
..++.+|||+|||+|..+..||+. |.+|+|+|+|+.+| +.++......... .....+.+..++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGI-QEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHH-HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHH-HHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 347889999999999999999987 88999999999998 4444332221100 000122222232
Q ss_pred -CCCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 71 -AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 71 -~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
..+...+.||+|+...++.+. ..+.....++++.++|||||++++....
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~-~~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAI-NPGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred hccccccCceeEEEEEEEEEec-cchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 223456799999999998444 4677889999999999999998877443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.79 E-value=6.6e-20 Score=126.86 Aligned_cols=111 Identities=5% Similarity=-0.042 Sum_probs=79.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-----------CCcceeeccCCCCCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-----------PALPHIKHSWGDAFP 73 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 73 (175)
...+|++|||+|||+|..+..||++ |.+|+|+|+|+.|+ +.++......... ........+..+..+
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAV-ERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHH-HHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHH-HHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 3457899999999999999999988 89999999999998 6665544332210 011111111211112
Q ss_pred CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 74 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
....+||+|++..++.+.. .++...+++++.++|||||.+++..
T Consensus 95 ~~~~~~D~i~~~~~l~~l~-~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp HHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccccceeEEEEEeeeEecc-hhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 2345899999999984443 5677899999999999999887763
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.2e-19 Score=129.93 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=96.9
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCc-----------------------
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL----------------------- 61 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~----------------------- 61 (175)
...+|.++||+|||+|..++..+.....+|+++|+|+.|+ +.++++..........
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR-QELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH-HHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHH-HHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 4457899999999999888665555467899999999998 6666555432221000
Q ss_pred ------ceeeccCCC-----CCCCCCCCccEEEeCCcccCcc-cchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCC
Q 030558 62 ------PHIKHSWGD-----AFPIPNPDWDLILASDILLYVK-QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG 129 (175)
Q Consensus 62 ------~~~~~~~~~-----~~~~~~~~fD~i~~~~~l~~~~-~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~ 129 (175)
.....+... ..+...++||+|++..++.+.. +.+++..++++++++|||||.+++..+....
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~------ 203 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES------ 203 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC------
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCc------
Confidence 001111111 1234456899999999985543 3357889999999999999998886332210
Q ss_pred CCCCceEeeeeccC-CCcchhHHHHHHHHcCCeeEEe
Q 030558 130 LPWPAFLMSWRRRI-GKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.+.....+.. ...+.+++.+.++++||++++.
T Consensus 204 ----~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 204 ----WYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp ----EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ----ccccCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 0111111110 1124689999999999998765
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=5.4e-19 Score=122.44 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=82.0
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~ 83 (175)
...++++|||+|||+|.+++.+++. +.+|+++|+|+.++ +.++++...++... ..+.+.+++.. ...+++||+|+
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i-~~a~~n~~~~~l~~--~~i~~~~~d~~~~~~~~~fD~Ii 124 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAI-KLAKENIKLNNLDN--YDIRVVHSDLYENVKDRKYNKII 124 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHH-HHHHHHHHHTTCTT--SCEEEEECSTTTTCTTSCEEEEE
T ss_pred CcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccc-hhHHHHHHHhCCcc--ceEEEEEcchhhhhccCCceEEE
Confidence 3457899999999999999999876 78999999999998 88888888877632 12333333332 34567999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++.++++.. +....+++++.+.|+|||.+++.
T Consensus 125 ~~~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 125 TNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp ECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcccEEecc--hhhhhHHHHHHHhcCcCcEEEEE
Confidence 998863332 33458999999999999988774
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.76 E-value=9.1e-19 Score=124.03 Aligned_cols=142 Identities=8% Similarity=-0.039 Sum_probs=94.6
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCcc
Q 030558 2 HHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 80 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (175)
+...+.+|.+|||||||+|..+..+++.. +..|+|+|+|+.|+ +.++...... ..+..+..+.....+..+..+|
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i-~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~ 143 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM-RELLDACAER---ENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHH-HHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCC
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHhhh---cccceEEEeeccCcccccccce
Confidence 34567789999999999999999999874 45799999999998 5555443332 1233444444444445566788
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
++++...+++ .++...++.++.+.|||||.+++............ + ....++..+.++++||
T Consensus 144 v~~i~~~~~~---~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~----~-----------~~~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 144 VDVIYEDVAQ---PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD----P-----------KEIFKEQKEILEAGGF 205 (230)
T ss_dssp EEEEEECCCS---TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC----H-----------HHHHHHHHHHHHHHTE
T ss_pred eEEeeccccc---hHHHHHHHHHHHHhcccCceEEEEeeccccCCCCC----H-----------HHHHHHHHHHHHHcCC
Confidence 8776666533 34566899999999999998888632211100000 0 0112556678899999
Q ss_pred eeEEe
Q 030558 161 EVKHL 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
++.+.
T Consensus 206 ~ive~ 210 (230)
T d1g8sa_ 206 KIVDE 210 (230)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87665
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.76 E-value=1.1e-18 Score=127.44 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=80.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++.+|||+|||+|.++..+++.. +.+|+|+|+|+.++ +.++++....+. .+..+..+. ..+++ +++||+|+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l-~~a~~~~~~~~~--~~~f~~~d~-~~~~~-~~~fD~v~ 99 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL-AEARELFRLLPY--DSEFLEGDA-TEIEL-NDKYDIAI 99 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHH-HHHHHHHHSSSS--EEEEEESCT-TTCCC-SSCEEEEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHh-hhhhcccccccc--ccccccccc-ccccc-cCCceEEE
Confidence 4567899999999999999998754 46799999999998 777767665444 223332222 23343 45899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
+..+++|.. ++..++++++++|||||.+++..+.
T Consensus 100 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 100 CHAFLLHMT---TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EESCGGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EehhhhcCC---CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999995555 4459999999999999999887543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5e-19 Score=129.05 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=92.2
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC----------C
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD----------A 71 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 71 (175)
+.+|||||||+|.++..+++.. ..+++++|+|+.|+ +.++++..... ....+.+++.. .
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l-~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-AKYKELVAKIS---NLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHH-HHHHHHHTTCC---SCTTEEEEEECSCHHHHHHHHT
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHH-HHHHHHHhhcc---ccccccccchhhhhhhhcchhc
Confidence 3479999999999988776642 23589999999998 55555544322 22334443321 2
Q ss_pred CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCC-CCceEeeeeccCCCcchhH
Q 030558 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-WPAFLMSWRRRIGKEDETI 150 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 150 (175)
.+..+++||+|++.++++|..+ +..+++++.++|+|||.++++..........+... ...+......++ .+..+
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~ 191 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQY--ITSDD 191 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCC--CCHHH
T ss_pred ccCCCCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCccccc--CCHHH
Confidence 2456789999999999966654 45999999999999999888754432111000000 000000000111 13477
Q ss_pred HHHHHHHcCCeeE
Q 030558 151 FFTSCENAGLEVK 163 (175)
Q Consensus 151 ~~~~~~~~g~~~~ 163 (175)
+.+.+++.||.+.
T Consensus 192 ~~~~L~~~G~~~~ 204 (280)
T d1jqea_ 192 LTQMLDNLGLKYE 204 (280)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHCCCceE
Confidence 8999999999743
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.9e-19 Score=126.81 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=76.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-CCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~i~~~ 85 (175)
.+|++|||||||+|..+..+++..+.+|+++|+|+.++ +.++++...... .+..+..++.+ ..++++++||.|+.-
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF-QRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 128 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHH-HHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHH-HHHHHHhhhccc--ccccccccccccccccccccccceeec
Confidence 36889999999999999999887667899999999998 666666555333 22222222211 224567789998842
Q ss_pred C--cccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 D--ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~--~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
. ..+...+..+...++++++|+|||||+|++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 129 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 1 1223344456669999999999999988774
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.73 E-value=2.5e-18 Score=123.81 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=101.5
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
....++|||||||+|.++..+++.. +.+++++|+ +.++ +.++++....+...++..+..+. ....+.+||+|++
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-~~a~~~~~~~~~~~ri~~~~~d~---~~~~p~~~D~v~~ 153 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDF---FKPLPVTADVVLL 153 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCT---TSCCSCCEEEEEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-HHHHHHHhhcCCcceeeeeeeec---cccccccchhhhc
Confidence 3455889999999999999999875 568999998 6676 67777777766655555544333 3333457999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCC--CCC-CCceEeeeeccCCCcchhHHHHHHHHcCCe
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTE--GLP-WPAFLMSWRRRIGKEDETIFFTSCENAGLE 161 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (175)
.++++++. .++...+|++++++|||||++++............ ... ........... ...+.+++.++++++||+
T Consensus 154 ~~vLh~~~-d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g-~~rt~~e~~~ll~~AGf~ 231 (256)
T d1qzza2 154 SFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGG-RVRTRDEVVDLAGSAGLA 231 (256)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSC-CCCCHHHHHHHHHTTTEE
T ss_pred cccccccC-cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCC-ccCCHHHHHHHHHHCCCc
Confidence 99996654 56677899999999999999998743221111000 000 00000000011 112458999999999998
Q ss_pred eEEec
Q 030558 162 VKHLG 166 (175)
Q Consensus 162 ~~~~~ 166 (175)
+.++.
T Consensus 232 ~~~~~ 236 (256)
T d1qzza2 232 LASER 236 (256)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 87764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=4.8e-18 Score=124.56 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=76.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCc---ceeeccCC--CCCCCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL---PHIKHSWG--DAFPIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~fD~i 82 (175)
++++|||+|||+|.++..+++. +.+|+|+|+|+.|| +.++++.......... .....++. +......++||.|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKML-KYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHH-HHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 4679999999999999999987 78999999999998 6666665554431111 11111111 1111234689999
Q ss_pred EeC-CcccCccc----chHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LAS-DILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~-~~l~~~~~----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++. +++.|..+ .+++..+++++.++|||||+|++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 875 46655543 346789999999999999999886
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=7.9e-18 Score=115.73 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=81.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++.+|||+|||+|.+++.+|+. +.+|+++|+++.++ +.+++|...+++..++..+..+.. ........||+|++
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l-~~a~~n~~~~gl~~~v~~~~gda~-~~~~~~~~~D~v~~ 106 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAI-STTEMNLQRHGLGDNVTLMEGDAP-EALCKIPDIDIAVV 106 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHTTCCTTEEEEESCHH-HHHTTSCCEEEEEE
T ss_pred CCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHH-HHHHHHHHHcCCCcceEEEECchh-hcccccCCcCEEEE
Confidence 3457899999999999999999886 77999999999998 899999998888555544433321 12234568999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.... . ....+++++.+.|||||++++.
T Consensus 107 ~~~~---~---~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 107 GGSG---G---ELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp SCCT---T---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred eCcc---c---cchHHHHHHHHHhCcCCEEEEE
Confidence 8665 2 2338899999999999988774
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=3.6e-17 Score=121.09 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=85.0
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
+....+|++|||||||+|.+++.+|+.++.+|+|+|.|+.+ ..++++...++...++..+..+. ..++.+.++||+|
T Consensus 28 ~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~--~~a~~~~~~n~~~~~v~~~~~~~-~~~~~~~~~~D~i 104 (316)
T d1oria_ 28 NRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS--DYAVKIVKANKLDHVVTIIKGKV-EEVELPVEKVDII 104 (316)
T ss_dssp CHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH--HHHHHHHHHTTCTTTEEEEESCT-TTCCCSSSCEEEE
T ss_pred ccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH--hhhhhHHHHhCCccccceEeccH-HHcccccceeEEE
Confidence 34566899999999999999999999866789999999865 45556667777755555554433 3345667799999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++..+.++......+..++..+.++|||||.++-.
T Consensus 105 vs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 105 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 99777655555556778999999999999977644
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=5.4e-17 Score=120.72 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=85.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...+|++|||||||+|.+++.+|+.++.+|+++|.|+ ++ +.++++...++....+..+..+. ..+++++++||+|++
T Consensus 35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~-~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKL-EDVHLPFPKVDIIIS 111 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCT-TTSCCSSSCEEEEEE
T ss_pred ccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeeh-hhccCcccceeEEEE
Confidence 4568999999999999999999998667899999997 54 56667777777755555555444 345566789999999
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
..+.++......+..++....++|||||.++-
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 87776666556677889999999999997653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=8.5e-17 Score=114.81 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=77.6
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCcc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD 80 (175)
.++.+|.+|||+|||+|.++..+|+.. ..+|+++|++++++ +.+++|........ ++.+..++... +.+++||
T Consensus 81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~-~~A~~n~~~~~~~~---nv~~~~~Di~~~~~~~~fD 156 (250)
T d1yb2a1 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNL-KKAMDNLSEFYDIG---NVRTSRSDIADFISDQMYD 156 (250)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHH-HHHHHHHHTTSCCT---TEEEECSCTTTCCCSCCEE
T ss_pred cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhcCCC---ceEEEEeeeecccccceee
Confidence 456789999999999999999999865 35799999999998 78888877654433 34444444333 4567899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.|++. .++.. .+++++.++|||||++++.
T Consensus 157 ~V~ld-----~p~p~---~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 157 AVIAD-----IPDPW---NHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEEC-----CSCGG---GSHHHHHHTEEEEEEEEEE
T ss_pred eeeec-----CCchH---HHHHHHHHhcCCCceEEEE
Confidence 99863 23333 7899999999999988874
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=6.6e-17 Score=117.06 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=72.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|||+|||+|.++..+++.. +.+++|+|+|+.|+ +.+++... ++..+..+ ...+++.+++||+|++.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-~~a~~~~~------~~~~~~~d-~~~l~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-KAAAKRYP------QVTFCVAS-SHRLPFSDTSMDAIIRI 154 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-HHHHHHCT------TSEEEECC-TTSCSBCTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-hhhhcccc------cccceeee-hhhccCCCCCEEEEeec
Confidence 367899999999999999998875 56899999999998 55543321 12232222 24567888999999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
.++.+ ++++.|+|||||.++++++..
T Consensus 155 ~~~~~----------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 155 YAPCK----------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp SCCCC----------HHHHHHHEEEEEEEEEEEECT
T ss_pred CCHHH----------HHHHHHHhCCCcEEEEEeeCC
Confidence 77622 467999999999999986543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.5e-16 Score=116.30 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=81.2
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
....++++|||||||+|.+++.+|+.++.+|+++|.|+.+. . +++....++....+..+..+. ..++.+.++||+|+
T Consensus 31 ~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~-a~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~D~Iv 107 (311)
T d2fyta1 31 PHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-Q-AMDIIRLNKLEDTITLIKGKI-EEVHLPVEKVDVII 107 (311)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-H-HHHHHHHTTCTTTEEEEESCT-TTSCCSCSCEEEEE
T ss_pred cccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-H-HHHHHHHhCCCccceEEEeeH-HHhcCccccceEEE
Confidence 45678999999999999999999998667899999999874 3 444555555544455544333 33455667999999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..+.++......+..++....+.|+|||+++-.
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 9766654444445567777788899999977643
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=1.3e-16 Score=114.57 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=78.6
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDW 79 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f 79 (175)
.+..+|.+|||+|||+|.+++.||+..+ .+|+++|++++++ +.+++|.+.... ....++.+..++. .++++++|
T Consensus 92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~-~~Ar~n~~~~~~-~~~~nv~~~~~d~~~~~~~~~~f 169 (264)
T d1i9ga_ 92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-EHARRNVSGCYG-QPPDNWRLVVSDLADSELPDGSV 169 (264)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHHHT-SCCTTEEEECSCGGGCCCCTTCE
T ss_pred hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHH-HHHHHhhhhhcc-CCCceEEEEecccccccccCCCc
Confidence 3567899999999999999999999764 4799999999998 777777664311 1123344444432 35678899
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
|.|++. .+++ ..++.++.++|||||++++..+.
T Consensus 170 DaV~ld-----lp~P---~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 170 DRAVLD-----MLAP---WEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp EEEEEE-----SSCG---GGGHHHHHHHEEEEEEEEEEESS
T ss_pred ceEEEe-----cCCH---HHHHHHHHhccCCCCEEEEEeCc
Confidence 999862 2433 38999999999999988875333
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=9.2e-16 Score=106.95 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=70.4
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCcc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD 80 (175)
.++.+|.+|||+|||+|..+..+++.. ..+|+|+|+|+.|+ +.++++....+ .+..+..+..+.. +.....+|
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i-~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPF-EKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHH-HHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHH-HHHHHHhhccC---CceEEEeeccCccccccccceEE
Confidence 356689999999999999999999875 34799999999998 55544444322 2334433332211 11122455
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+.. + ....+...+++++.++|||||.+++.
T Consensus 128 ~v~~~--~---~~~~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 128 LIYQD--I---AQKNQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp EEEEC--C---CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEec--c---cChhhHHHHHHHHHHHhccCCeEEEE
Confidence 55432 2 22335568999999999999998886
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=4.5e-16 Score=112.18 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=92.1
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCcc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWD 80 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD 80 (175)
.++.+|.+|||+|||+|.++..+|+.. +.+|+++|++++++ +.++++....+.. ..+.+...+.. .+....||
T Consensus 99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~-~~A~~~~~~~g~~---~~v~~~~~d~~~~~~~~~~D 174 (266)
T d1o54a_ 99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA-KLAESNLTKWGLI---ERVTIKVRDISEGFDEKDVD 174 (266)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHH-HHHHHHHHHTTCG---GGEEEECCCGGGCCSCCSEE
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHhccc---cCcEEEecccccccccccee
Confidence 356789999999999999999999875 45799999999998 8888888876652 34444444432 34556899
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCC
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
.|+.. .++++ .+++++.++|||||++++..+.. .-.....+.+++.||
T Consensus 175 ~V~~d-----~p~p~---~~l~~~~~~LKpGG~lv~~~P~~------------------------~Qv~~~~~~l~~~gF 222 (266)
T d1o54a_ 175 ALFLD-----VPDPW---NYIDKCWEALKGGGRFATVCPTT------------------------NQVQETLKKLQELPF 222 (266)
T ss_dssp EEEEC-----CSCGG---GTHHHHHHHEEEEEEEEEEESSH------------------------HHHHHHHHHHHHSSE
T ss_pred eeEec-----CCCHH---HHHHHHHhhcCCCCEEEEEeCcc------------------------cHHHHHHHHHHHCCc
Confidence 88752 24343 89999999999999888743321 012567777888998
Q ss_pred eeEEe
Q 030558 161 EVKHL 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
...++
T Consensus 223 ~~i~~ 227 (266)
T d1o54a_ 223 IRIEV 227 (266)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 64443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=1.9e-16 Score=110.88 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=76.0
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCc
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDW 79 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f 79 (175)
.+..+|.+|||||||+|..+..+++..+ ..|+++|+++.++ +.++++....+. .++....++. ....+++|
T Consensus 71 l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~-~~a~~~~~~~~~----~n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGI----ENVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTC----CSEEEEESCGGGCCGGGCCE
T ss_pred hhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhH-HHhhhhHhhhcc----cccccccCchHHccccccch
Confidence 3466899999999999999999988654 4699999999998 777888777666 3333333332 23445689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|+|++..++.+. + +++.+.|||||++++..
T Consensus 146 D~I~~~~~~~~~---p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 146 DVIFVTVGVDEV---P------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEEECSBBSCC---C------HHHHHHEEEEEEEEEEB
T ss_pred hhhhhhccHHHh---H------HHHHHhcCCCcEEEEEE
Confidence 999999887333 2 34678899999998853
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=4.2e-15 Score=106.76 Aligned_cols=131 Identities=13% Similarity=0.056 Sum_probs=93.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+|.+|||+|||+|.+++.+|+..+++|+++|+|+.++ +.+++|...+++...+..+..+..+. ...+.||.|++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~-~~~~~N~~~n~l~~~v~~~~~D~~~~--~~~~~~D~Ii~~~ 182 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-KFLVENIHLNKVEDRMSAYNMDNRDF--PGENIADRILMGY 182 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHH-HHHHHHHHHTTCTTTEEEECSCTTTC--CCCSCEEEEEECC
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHH-HHHHHHHHHhCCCceEEEEEcchHHh--ccCCCCCEEEECC
Confidence 46899999999999999999998667999999999998 99999999999865555554443222 2246899999865
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCCCcchhHHHHHHHHcCCeeEEe
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 165 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (175)
.- . .. ..+.++.+.++|||.+.+. .............+.+.+.++..|++++.+
T Consensus 183 p~-~---~~---~~l~~a~~~l~~gG~lh~~------------------~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 183 VV-R---TH---EFIPKALSIAKDGAIIHYH------------------NTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp CS-S---GG---GGHHHHHHHEEEEEEEEEE------------------EEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred CC-c---hH---HHHHHHHhhcCCCCEEEEE------------------eccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 43 1 12 5677888999999966442 111111222222466778888999987654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=9.2e-15 Score=101.35 Aligned_cols=103 Identities=13% Similarity=-0.005 Sum_probs=75.4
Q ss_pred cEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCCccEEEeC
Q 030558 11 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPDWDLILAS 85 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD~i~~~ 85 (175)
.|||||||+|..+..+|+.. ..+++|+|+++.++ ..+.++....++ .++.+..++.. .++++++|.|++.
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i-~~a~~~~~~~~l----~Nv~~~~~Da~~l~~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVI-VTAVQKVKDSEA----QNVKLLNIDADTLTDVFEPGEVKRVYLN 106 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHH-HHHHHHHHHSCC----SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHH-HHHHHHHHHHhc----cCchhcccchhhhhcccCchhhhccccc
Confidence 68999999999999998875 57799999999998 666666666666 34444444322 2567899999887
Q ss_pred CcccCcccchH-----HHHHHHHHHhhcCCCCceeecc
Q 030558 86 DILLYVKQYSN-----LIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 86 ~~l~~~~~~~~-----~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
....+...... ...+++++.++|||||.+++.+
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 66522211100 1379999999999999998863
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.59 E-value=2.3e-16 Score=104.84 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=79.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
..+|++|||+|||+|.+++.++++++.+|+++|.++.++ +.++++....+...++..+..+....++...++||+|++.
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D 90 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-AIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 90 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-hhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence 357999999999999999999888677899999999998 8889999988775555555544433333446789999996
Q ss_pred CcccCcccchHHHHHHHHHH--hhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~--~~l~pgG~~~~~ 117 (175)
..+ ... ....++..+. +.|+|+|.+++.
T Consensus 91 PPy-~~~---~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 91 PPY-AKE---TIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp CSS-HHH---HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhh-ccc---hHHHHHHHHHHCCCcCCCeEEEEE
Confidence 543 322 3335666554 468999988775
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=1.6e-14 Score=101.67 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=76.2
Q ss_pred CCccccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCC
Q 030558 2 HHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNP 77 (175)
Q Consensus 2 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 77 (175)
+...+.+|.+|||+|||+|..+..+++..| ..|+|+|+++.++ +.+..+..... .+..+..+... ..+....
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l-~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL-RELVPIVEERR---NIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHSSCT---TEEEEECCTTCGGGGTTTCC
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHH-HHHHHHHHhcC---CceEEEEECCCccccccccc
Confidence 455677899999999999999999999764 4699999999998 55554443322 22334333322 2233446
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+..-. ..++...+++++.+.|||||.++++
T Consensus 143 ~vD~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 143 KVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEEE
Confidence 7888876322 2345568999999999999988886
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=7.9e-15 Score=105.76 Aligned_cols=125 Identities=14% Similarity=0.210 Sum_probs=90.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.+.+|||+|||+|..++.+++.. ..+|+++|+|+.++ +.+++|...++. .++..+..++.+. ..+++||+|+++.
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al-~~A~~Na~~~~~-~~v~~~~~d~~~~--~~~~~fDlIvsNP 183 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV-SLAQRNAQHLAI-KNIHILQSDWFSA--LAGQQFAMIVSNP 183 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH-HHHHHHHHHHTC-CSEEEECCSTTGG--GTTCCEEEEEECC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHH-hHHHHHHHHhCc-ccceeeecccccc--cCCCceeEEEecc
Confidence 46789999999999999998876 67899999999998 889999988877 2344444444332 3456999999986
Q ss_pred cccCccc----------------------chHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCceEeeeeccCC
Q 030558 87 ILLYVKQ----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIG 144 (175)
Q Consensus 87 ~l~~~~~----------------------~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (175)
......+ .....++++++.+.|+|||.+++.+.. .
T Consensus 184 PYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-----------------------~ 240 (274)
T d2b3ta1 184 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-----------------------Q 240 (274)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-----------------------S
T ss_pred hhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-----------------------h
Confidence 6421110 123457888888999999977773111 0
Q ss_pred CcchhHHHHHHHHcCCe
Q 030558 145 KEDETIFFTSCENAGLE 161 (175)
Q Consensus 145 ~~~~~~~~~~~~~~g~~ 161 (175)
. .....+++++.||.
T Consensus 241 q--~~~v~~~l~~~gf~ 255 (274)
T d2b3ta1 241 Q--GEAVRQAFILAGYH 255 (274)
T ss_dssp C--HHHHHHHHHHTTCT
T ss_pred H--HHHHHHHHHHCCCC
Confidence 1 36677888889986
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.7e-15 Score=104.35 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=74.2
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCC--CCCCCCCc
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDA--FPIPNPDW 79 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~f 79 (175)
...+|.+|||+|||+|..+..+|+.. ..+|+++|++++++ +.++++....+.. .....+.+..++. .....++|
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~-~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f 151 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY 151 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHH-HHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence 45678999999999999999998865 34799999999998 6666666554431 0112233333332 23445689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|+|++..++.+ .+ +++.+.|||||++++..
T Consensus 152 D~I~~~~~~~~---ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 152 DAIHVGAAAPV---VP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEEEECSBBSS---CC------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhhcchhh---cC------HHHHhhcCCCcEEEEEE
Confidence 99999988733 22 35788999999998854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.53 E-value=7.2e-15 Score=103.14 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=71.3
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDL 81 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~ 81 (175)
.+..+|.+|||||||+|.++..+++. +.+|+++|+++.++ +.++++.... .++.+..++... ...++||.
T Consensus 66 L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~-~~A~~~~~~~------~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 66 LDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMY-NYASKLLSYY------NNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHH-HHHHHHHTTC------SSEEEEESCGGGCCGGGCCEEE
T ss_pred hhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHH-HHHHHHHhcc------cccccccCchhhcchhhhhHHH
Confidence 35668999999999999999999887 78999999999997 6666554431 233444443221 23468999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|++..++ +..+ +.+.+.|+|||++++-.
T Consensus 138 Iiv~~a~---~~ip------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 138 VVVWATA---PTLL------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEESSBB---SSCC------HHHHHTEEEEEEEEEEE
T ss_pred HHhhcch---hhhh------HHHHHhcCCCCEEEEEE
Confidence 9998887 3333 34678899999998853
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.52 E-value=8.5e-14 Score=96.42 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=73.6
Q ss_pred CcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEEeCCc
Q 030558 10 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDI 87 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~~~~~ 87 (175)
-.|||||||+|..+..+|+.. ...++|+|+++.++ ..+.++....++ .++..+..+..+.. .+++.++|.|++...
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v-~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL-SYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHH-HHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence 359999999999999999975 66799999999998 555555555555 22333333322222 256779999987654
Q ss_pred ccCcccch------HHHHHHHHHHhhcCCCCceeecc
Q 030558 88 LLYVKQYS------NLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 88 l~~~~~~~------~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
- -|+... -...+++.+.++|||||.+++.+
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3 111111 01489999999999999998864
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1e-14 Score=107.55 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=72.5
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCC----------CCCCcceeeccCCCCC
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNG----------ITPALPHIKHSWGDAF 72 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 72 (175)
++.+|.+|||+|||+|.++..||+..+ .+|+++|++++++ +.+++|....+ ...++.....+..+..
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~-~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~ 173 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH-DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 173 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH-HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHH-HHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence 567899999999999999999998764 4699999999997 67766665421 1122233333332222
Q ss_pred -CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 73 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 73 -~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
...+..||.|+. ++ +++. .++.++.++|||||++++..+..
T Consensus 174 ~~~~~~~fD~V~L-D~----p~P~---~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 174 EDIKSLTFDAVAL-DM----LNPH---VTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp -------EEEEEE-CS----SSTT---TTHHHHGGGEEEEEEEEEEESSH
T ss_pred cccCCCCcceEee-cC----cCHH---HHHHHHHHhccCCCEEEEEeCCH
Confidence 234568999876 22 3333 78999999999999988864433
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=1.4e-14 Score=109.56 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=72.4
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCC-----CCCcceeeccC-CCCCC---
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGI-----TPALPHIKHSW-GDAFP--- 73 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~--- 73 (175)
..+.+|+++||||||+|.+++.+|+..++ +|+|+|+++.++ +.++++...... ........+.. ++...
T Consensus 212 l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i-~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~ 290 (406)
T d1u2za_ 212 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDAS-DLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR 290 (406)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHH-HHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred hCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHHhhhhhhhccccccceeeeeechhhccc
Confidence 35678899999999999999999987665 799999999998 555544432110 00111112211 11111
Q ss_pred --CCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 74 --IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 --~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..-...|+|+++..+ + .+++...+.++++.|||||+++..
T Consensus 291 ~d~~~~~adVV~inn~~-f---~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 291 VAELIPQCDVILVNNFL-F---DEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp HHHHGGGCSEEEECCTT-C---CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccceEEEEeccc-C---chHHHHHHHHHHHhcCCCcEEEEe
Confidence 011246788887554 3 345669999999999999998876
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=2e-14 Score=106.11 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=80.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CCCCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~i 82 (175)
..+|++|||++||+|.+++.++.. +.+|+++|+|+.++ +.+++|...+++ ..+..+..+..+. +....++||+|
T Consensus 143 ~~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al-~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~V 219 (318)
T d1wxxa2 143 RFRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEAL-RRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLV 219 (318)
T ss_dssp GCCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHH-HHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred HhCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHH-HHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEE
Confidence 347899999999999999998764 78999999999998 899999999988 3344444433221 22345689999
Q ss_pred EeCCcccCcc------cchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVK------QYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~------~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++....+... .......++..+.++|+|||.++++
T Consensus 220 i~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~ 260 (318)
T d1wxxa2 220 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA 260 (318)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9865432111 1223457888999999999977774
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.7e-14 Score=106.95 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=73.7
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhh-------CCCCCCcceeeccCCCCCC--C
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTT-------NGITPALPHIKHSWGDAFP--I 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~ 74 (175)
.+.++.+|||||||+|.++..+|+..++ +++|+|+++.++ +.++.+... .+. ....+.+..++... +
T Consensus 148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~-~~a~~~~~~~~~~~~~~g~--~~~~i~~~~gd~~~~~~ 224 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPA-KYAETMDREFRKWMKWYGK--KHAEYTLERGDFLSEEW 224 (328)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHH-HHHHHHHHHHHHHHHHHTC--CCCCEEEEECCTTSHHH
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHhhhccc--cCCceEEEECccccccc
Confidence 4567899999999999999999887655 699999999987 444433222 122 12334444444432 3
Q ss_pred CCCC--ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPD--WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~--fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.. .|+|+++... +. +++...+.++++.|||||++++.
T Consensus 225 ~~~~~~advi~~~~~~-f~---~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 225 RERIANTSVIFVNNFA-FG---PEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHHHCSEEEECCTT-TC---HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccCcceEEEEccee-cc---hHHHHHHHHHHHhCCCCcEEEEe
Confidence 3333 4678876554 43 45669999999999999999876
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.48 E-value=2.6e-14 Score=99.66 Aligned_cols=101 Identities=16% Similarity=0.233 Sum_probs=77.8
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDL 81 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~ 81 (175)
.+..++.+|||||||+|..+..+++..+.+|+++|.++.++ +.++++....+. .++.+..++... ...+.||.
T Consensus 74 L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~-~~a~~~l~~~g~----~nv~~~~gd~~~g~~~~~pfD~ 148 (215)
T d1jg1a_ 74 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV-EFAKRNLERAGV----KNVHVILGDGSKGFPPKAPYDV 148 (215)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH-HHHHHHHHHTTC----CSEEEEESCGGGCCGGGCCEEE
T ss_pred hccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHH-HHHHHHHHHcCC----ceeEEEECccccCCcccCccee
Confidence 35678999999999999999999887677899999999887 778888887666 445555554332 34568999
Q ss_pred EEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 82 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 82 i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
|++..++ ...+ ..+...|+|||++++..
T Consensus 149 Iiv~~a~---~~ip------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 149 IIVTAGA---PKIP------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEECSBB---SSCC------HHHHHTEEEEEEEEEEE
T ss_pred EEeeccc---ccCC------HHHHHhcCCCCEEEEEE
Confidence 9999887 3333 23667899999988753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=1.8e-14 Score=106.72 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=80.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CCCCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~fD~i~ 83 (175)
.+|++|||+|||+|.+++.+++.++.+|+++|+|+.++ +.+++|...+++..++..+..+..+ .++....+||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al-~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHH-HHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 35899999999999999999888666899999999998 8999999999985444444333211 1223456899999
Q ss_pred eCCcccCccc------chHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQ------YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~------~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+....+.... ......++..+.++|+|||.+++.
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~ 262 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 262 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8655422111 113356788889999999987775
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.7e-12 Score=91.47 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCCCccE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPDWDL 81 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fD~ 81 (175)
+..++||+|||+|..++.++++. +.+++|+|+|+.++ +.+++|.+.+++..++.....++.+.+ ...+++||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al-~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCF-NYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHH-HHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHH-HHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 45689999999999999988865 78999999999998 999999999998777766665553322 223568999
Q ss_pred EEeCCccc
Q 030558 82 ILASDILL 89 (175)
Q Consensus 82 i~~~~~l~ 89 (175)
|+|+..++
T Consensus 140 ivsNPPY~ 147 (250)
T d2h00a1 140 CMCNPPFF 147 (250)
T ss_dssp EEECCCCC
T ss_pred EEecCccc
Confidence 99998874
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=1.6e-12 Score=89.79 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=58.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++|++|||+|||+|.+++.++..++.+|+|+|+|+.++ +.+++|....+. ....+ ..+... .++.||+|+++
T Consensus 44 dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~-~~a~~N~~~~~~--~~~~~---~~d~~~-~~~~fD~Vi~n 116 (201)
T d1wy7a1 44 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-DVLIENLGEFKG--KFKVF---IGDVSE-FNSRVDIVIMN 116 (201)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHTGGGTT--SEEEE---ESCGGG-CCCCCSEEEEC
T ss_pred CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHH-HHHHHHHHHcCC--CceEE---ECchhh-hCCcCcEEEEc
Confidence 457899999999999999998887556899999999998 888888777655 22222 223333 25689999998
Q ss_pred Ccc
Q 030558 86 DIL 88 (175)
Q Consensus 86 ~~l 88 (175)
..+
T Consensus 117 PP~ 119 (201)
T d1wy7a1 117 PPF 119 (201)
T ss_dssp CCC
T ss_pred Ccc
Confidence 775
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=2.3e-14 Score=96.82 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=72.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCC-CCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i~~ 84 (175)
..+|++|||+|||+|.+++.++++ +.+|+++|.|+.++ +.+++|.+.++...++.....+.. ........+||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~-~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAV-RLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHH-HHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHH-hhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 357899999999999999998887 77999999999998 888989888777432222111110 011234568999998
Q ss_pred CCcccCcccchHHHHHHHHHH--hhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~--~~l~pgG~~~~~ 117 (175)
...+ ... .. ..+.++. ..++|||.+++.
T Consensus 117 DPPY-~~~-~~---~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 117 APPY-AMD-LA---ALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp CCCT-TSC-TT---HHHHHHHHHTCEEEEEEEEEE
T ss_pred cccc-ccC-HH---HHHHHHHHcCCcCCCeEEEEE
Confidence 7653 333 22 3333333 479999977764
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.5e-13 Score=92.56 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=76.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
.++++|||++||+|.++++++++++.+|+++|.++.++ +.+++|....+. .+...+..+..+.+.....+||+|++..
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~-~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DP 119 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVS-QQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDP 119 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechh-hHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcC
Confidence 57899999999999999999998777899999999998 888888887655 2333333222222333456899999987
Q ss_pred cccCcccchHHHHHHHHHHh--hcCCCCceeec
Q 030558 87 ILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGH 117 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~ 117 (175)
.+ .... ...++..+.+ .|+|+|.+++.
T Consensus 120 PY-~~~~---~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 120 PF-RRGL---LEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp SS-STTT---HHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cc-ccch---HHHHHHHHHHCCCCCCCeEEEEE
Confidence 64 3322 3366666654 58999977774
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.36 E-value=2.9e-12 Score=93.36 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=76.7
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC-CcceeeccCCCCC---CCCCCCccEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAF---PIPNPDWDLI 82 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~fD~i 82 (175)
.++++|||++||+|.+++.+++. |.+|+++|.|..++ +.+++|...|+... .+..+..+..+.+ ....+.||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al-~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAI-GWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHH-HHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 35789999999999999999886 67999999999998 89999999888743 2333332221111 1134689999
Q ss_pred EeCCcccC-------cccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLY-------VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~-------~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++...-|- +.-......+++.+.++++|||.+++.
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 98544221 111234456777788899999976664
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.35 E-value=1e-12 Score=93.27 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=91.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 86 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (175)
..++|||||||+|.++..++++. +.+++..|..+ .+ + ......++..+..+..+.. ...|++++..
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~-------~~~~~~ri~~~~gd~~~~~----p~~D~~~l~~ 147 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-E-------NAPPLSGIEHVGGDMFASV----PQGDAMILKA 147 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-T-------TCCCCTTEEEEECCTTTCC----CCEEEEEEES
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-h-------ccCCCCCeEEecCCccccc----ccceEEEEeh
Confidence 35789999999999999998875 56789999843 33 1 2222334455544443322 2459999999
Q ss_pred cccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCC-CCCc---eEeeeeccCCCcchhHHHHHHHHcCCee
Q 030558 87 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGL-PWPA---FLMSWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
+++++. .++-..+|+++++.|+|||++++...-.+........ .... ..+-....-...+.+++.++++++||+.
T Consensus 148 vLh~~~-de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~ 226 (244)
T d1fp1d2 148 VCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK 226 (244)
T ss_dssp SGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred hhhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence 996654 6778899999999999999999984332221111000 0000 0000000011124689999999999997
Q ss_pred EEe
Q 030558 163 KHL 165 (175)
Q Consensus 163 ~~~ 165 (175)
.++
T Consensus 227 v~v 229 (244)
T d1fp1d2 227 FQV 229 (244)
T ss_dssp EEE
T ss_pred eEE
Confidence 665
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=1.1e-12 Score=90.03 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=54.4
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
+.++|++|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|... +..+. ++... .+++||+|++
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-~~ar~N~~~------~~~~~---~D~~~-l~~~fD~Vi~ 113 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-ETAKRNCGG------VNFMV---ADVSE-ISGKYDTWIM 113 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-HHHHHHCTT------SEEEE---CCGGG-CCCCEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-HHHHHcccc------ccEEE---Eehhh-cCCcceEEEe
Confidence 3457999999999999999988887566799999999998 777776532 22232 22222 3468999999
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+..+
T Consensus 114 NPPf 117 (197)
T d1ne2a_ 114 NPPF 117 (197)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8664
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=6.6e-12 Score=90.10 Aligned_cols=79 Identities=15% Similarity=0.274 Sum_probs=64.9
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+..+++|+|||+|..+..+++....+|+++|+|+.++ +.+++|...++...++.....+|.+..+...++||+|+++..
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al-~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAV-EIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHH-HHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHH-HHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 4568999999999999999887788899999999998 899999999888666665566665555444578999999855
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.33 E-value=1.3e-13 Score=96.66 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=70.1
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCC-------CcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCCC--C
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMN-------LDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP--I 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-------~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~ 74 (175)
+..++.+|||||||+|..+..+++..+ .+|+++|++++++ +.++++....... ..+.++.+..++... .
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~-~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELV-RRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP 155 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHH-HHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHH-HHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence 456789999999999999988877542 3799999999987 5555554332110 011233333333322 3
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
..+.||.|++...+ ...+ +.+.+.|+|||++++..
T Consensus 156 ~~~~fD~Iiv~~a~---~~~p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 156 PNAPYNAIHVGAAA---PDTP------TELINQLASGGRLIVPV 190 (223)
T ss_dssp GGCSEEEEEECSCB---SSCC------HHHHHTEEEEEEEEEEE
T ss_pred cccceeeEEEEeec---hhch------HHHHHhcCCCcEEEEEE
Confidence 35689999999887 3333 34678999999998753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.33 E-value=1.2e-12 Score=96.23 Aligned_cols=111 Identities=12% Similarity=0.029 Sum_probs=80.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC-CCcceeeccCCCCC---CCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAF---PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~fD~ 81 (175)
..+|++|||+.||+|.+++.++..++.+|+++|+|+.++ +.+++|.+.|++. .++..+..+..+.+ .....+||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~-~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSR-ALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHH-HHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHH-HHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 346899999999999999998887566799999999998 8999999998873 23344443332221 123458999
Q ss_pred EEeCCcccC------cccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILLY------VKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~~------~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++...-+- .....+..++++.+.++|+|||.++++
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~ 262 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS 262 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 998544211 011234567889999999999988875
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.30 E-value=8.6e-13 Score=89.76 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=76.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i 82 (175)
..+|++|||++||+|.+++.++++++.+|+++|.++.++ +.+++|....+...++..+..+....++ ....+||+|
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~-~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAAL-KVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHH-HHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 357899999999999999999998777899999999998 8888888776653333333333221111 134589999
Q ss_pred EeCCcccCcccchHHHHHHHHHHh--hcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~ 117 (175)
++-..+ ... .....+..+.. .|+|+|.+++.
T Consensus 118 flDPPY-~~~---~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 118 LLDPPY-AKQ---EIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp EECCCG-GGC---CHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred Eechhh-hhh---HHHHHHHHHHHCCCCCCCEEEEEE
Confidence 987663 322 33467777764 69999977764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.29 E-value=6.3e-12 Score=89.23 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=90.5
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.++|+|||||+|..+..++++. +.+++..|..+ .+ +. .....++..+..+..+..| ..|+++...+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~~-------~~~~~r~~~~~~d~~~~~P----~ad~~~l~~v 148 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VI-ED-------APSYPGVEHVGGDMFVSIP----KADAVFMKWI 148 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TT-TT-------CCCCTTEEEEECCTTTCCC----CCSCEECSSS
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hh-hh-------cccCCceEEecccccccCC----CcceEEEEEE
Confidence 4789999999999999998876 67899999966 32 11 1122334444444433333 3577888889
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCceeeccccCCCCCCCCCCCCCc----eEe-eeeccCCCcchhHHHHHHHHcCCee
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA----FLM-SWRRRIGKEDETIFFTSCENAGLEV 162 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (175)
++.+. .++...+++++++.|+|||++++...-.............. +.+ .....-...+.+++.+++++|||+.
T Consensus 149 lh~~~-d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 149 CHDWS-DEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp STTSC-HHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred eecCC-HHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 85554 67888999999999999999998744332221111000000 000 0000011124689999999999987
Q ss_pred EEe
Q 030558 163 KHL 165 (175)
Q Consensus 163 ~~~ 165 (175)
.++
T Consensus 228 vkv 230 (243)
T d1kyza2 228 FKV 230 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.25 E-value=9.1e-11 Score=83.10 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=89.0
Q ss_pred CCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 9 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
.++|+|||||+|..+..++++. +.+++..|..+ .+ +. .....++..+..+.-+. ...+|++++.++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-~~-------~~~~~rv~~~~gD~f~~----~p~aD~~~l~~v 147 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-EN-------LSGSNNLTYVGGDMFTS----IPNADAVLLKYI 147 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-TT-------CCCBTTEEEEECCTTTC----CCCCSEEEEESC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-Hh-------CcccCceEEEecCcccC----CCCCcEEEEEee
Confidence 4779999999999999998875 67899999843 33 21 12223444444443222 235799999999
Q ss_pred ccCcccchHHHHHHHHHHhhcCCC---CceeeccccCCCCCCCCC-CCCCc-e--EeeeeccCCCcchhHHHHHHHHcCC
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPK---DSQVGHLTKNEQGEGTEG-LPWPA-F--LMSWRRRIGKEDETIFFTSCENAGL 160 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pg---G~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (175)
+++|. .++-.++|+++++.|+|| |++++...-......... ..... + .+..... ...+.+++.++++++||
T Consensus 148 LHdw~-d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G-~ert~~e~~~ll~~AGf 225 (244)
T d1fp2a2 148 LHNWT-DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNG-KERNEEEWKKLFIEAGF 225 (244)
T ss_dssp GGGSC-HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTC-CCEEHHHHHHHHHHTTC
T ss_pred cccCC-hHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCC-cCCCHHHHHHHHHHcCC
Confidence 95554 677789999999999999 666666322211110000 00000 0 0000011 12246899999999999
Q ss_pred eeEEe
Q 030558 161 EVKHL 165 (175)
Q Consensus 161 ~~~~~ 165 (175)
++.++
T Consensus 226 ~~~~i 230 (244)
T d1fp2a2 226 QHYKI 230 (244)
T ss_dssp CEEEE
T ss_pred ceEEE
Confidence 87765
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.20 E-value=2.1e-11 Score=83.52 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=68.2
Q ss_pred CCcEEEeCCCccHHHHH----HHHhC-----CCcEEEEeCChHHHHHHHHHHHh------------------hCCCC-CC
Q 030558 9 RRRCIELGSGTGALAIF----LRKAM-----NLDITTSDYNDQEIEDNIAYNST------------------TNGIT-PA 60 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~----l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~------------------~~~~~-~~ 60 (175)
.-||+++|||+|.-... +.... ..+|+|+|+|+.++ +.++...- ..... ..
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l-~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHh-hHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 45899999999985533 33221 13599999999998 44331110 00000 00
Q ss_pred c--------ceeeccC---CCCCCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 61 L--------PHIKHSW---GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 61 ~--------~~~~~~~---~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
. ..+.+.. .+..+...+.||+|+|.+++-+. +.+...++++.+++.|+|||.+++...+
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 0 0001111 11222345689999999998554 4677889999999999999988886433
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.7e-11 Score=85.49 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=77.2
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~f 79 (175)
.+.++|||||||+|..++.+|... +.+|+++|+++... +.++.+....+....+..+..+-.+.+ ....++|
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~-~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-ELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHH-HHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 467899999999999999998865 46899999999987 888888888887544444332221111 1235689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|+|+...- ...-...++.+.+.|+|||.+++-
T Consensus 137 D~ifiD~d------k~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 137 DVAVVDAD------KENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp EEEEECSC------STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeCC------HHHHHHHHHHHHHHhcCCcEEEEe
Confidence 99998532 234447788899999999988773
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=2.3e-11 Score=84.58 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=73.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCCCc
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDW 79 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f 79 (175)
.+.++|||+|||+|..++.+++.. +.+|+++|+++.++ +.++.+....+...++..+..+..+.++ ...++|
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~-~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA-AITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-HHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH-HHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 356899999999999999998865 56899999999997 7888888887775444444333222221 234689
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
|+|+.-.. .+.......+.+..+.|+|||.+++
T Consensus 134 D~ifiD~~----~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 134 DMVFLDHW----KDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEEEECSC----GGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ceeeeccc----ccccccHHHHHHHhCccCCCcEEEE
Confidence 99987522 2222222456777789999997665
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.14 E-value=1.3e-10 Score=78.83 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=75.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcce-eeccCCCCC--CCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPH-IKHSWGDAF--PIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~fD~i~ 83 (175)
..+.+|||+.||||.++++++++++.+|+.+|.+...+ +.+++|.+..+....... ...+..+.+ ......||+|+
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchh-hhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence 47889999999999999999999777899999999998 888889887655322222 222111111 22345799999
Q ss_pred eCCcccCcccchHHHHHHHHHHh--hcCCCCceeecc
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGHL 118 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~--~l~pgG~~~~~~ 118 (175)
+-... ... ....+++.+.. .|+++|.+++..
T Consensus 121 lDPPY-~~~---~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 121 LDPPF-HFN---LAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp ECCCS-SSC---HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echhH-hhh---hHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 87664 333 23366776654 689999777753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.05 E-value=1.8e-10 Score=80.52 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=76.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC------CCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------IPNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 78 (175)
.+.++|||||+++|..++.+|+.. +.+|+.+|.+++.. +.++++....+...++..+..+..+.++ ...++
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~-~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhH-HHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 467899999999999999999865 56899999999986 7888888887774444433322222221 12568
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|+.-.- ...-...++.+.+.|+|||.+++-
T Consensus 137 fD~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 137 YDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp BSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred eeEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEc
Confidence 999998421 233448888889999999988774
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=8.7e-11 Score=80.17 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=76.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----CCCCCCCcc
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----FPIPNPDWD 80 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~fD 80 (175)
..++..+||++||+|..+..+++.. +.+|+|+|.++.|+ +.++++...... ++..+.....+. .....++||
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l-~~a~~~l~~~~~--r~~~~~~~f~~~~~~~~~~~~~~vd 97 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVL-RIAEEKLKEFSD--RVSLFKVSYREADFLLKTLGIEKVD 97 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHTGGGTT--TEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHH-HHHHHhhccccc--cccchhHHHhhHHHHHHHcCCCCcc
Confidence 4578899999999999999988865 67899999999998 777766655332 233333221110 123356899
Q ss_pred EEEeCCcccC------cccchHHHHHHHHHHhhcCCCCceeecccc
Q 030558 81 LILASDILLY------VKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 120 (175)
Q Consensus 81 ~i~~~~~l~~------~~~~~~~~~~l~~l~~~l~pgG~~~~~~~~ 120 (175)
.|+.---+-. ......+...+..+.++|+|||++++..+.
T Consensus 98 gIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 98 GILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp EEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred eeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 9986432200 012345678899999999999999887443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=2.4e-09 Score=73.57 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=71.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC-CCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~ 83 (175)
..++++|+|+|||.|..++.+|-.. ..+|+.+|.+..-+ ..++.....-++ .++.......... ...+||+|+
T Consensus 63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L----~nv~v~~~R~E~~~~~~~fD~V~ 137 (207)
T d1jsxa_ 63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKL----ENIEPVQSRVEEFPSEPPFDGVI 137 (207)
T ss_dssp GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTC----SSEEEEECCTTTSCCCSCEEEEE
T ss_pred hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCC----cceeeeccchhhhccccccceeh
Confidence 3456899999999999999998754 57899999999876 555555555455 2233222222222 345899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+..+- .+..+++-....++++|.+++.
T Consensus 138 sRA~~-------~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 138 SRAFA-------SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CSCSS-------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhhc-------CHHHHHHHHHHhcCCCcEEEEE
Confidence 97664 2337888888999999987775
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.2e-08 Score=75.91 Aligned_cols=101 Identities=12% Similarity=0.164 Sum_probs=70.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i~ 83 (175)
.++.+|||+-||+|.+++.+|+. +.+|+|+|.++.++ +.+++|...++. .++..+..+..+.+. .....||+|+
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai-~~A~~na~~n~i-~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALV-EKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHH-HHHHHHHHHTTC-CSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCceEEEecccccccchhcccc-ccEEEeccCcHHHH-HHHHHhHHhccc-ccceeeecchhhhhhhhhhhhccCceEE
Confidence 35788999999999999999886 78999999999998 889999999888 344444444433332 2245799998
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.... ... ..++++.+.+. +|.-.+|++
T Consensus 288 lDPP-----R~G-~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 288 LDPA-----RAG-AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp ECCC-----TTC-CHHHHHHHHHH-CCSEEEEEE
T ss_pred eCCC-----Ccc-HHHHHHHHHHc-CCCEEEEEe
Confidence 7433 111 23567777664 555444443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.83 E-value=2.4e-09 Score=78.78 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCcc
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWD 80 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD 80 (175)
++.+|||.+||+|.+...+..+. ..+++|+|+++.++ ..++.+....+.. .... .++.. .....+||
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~-~~a~~~~~~~~~~--~~~~---~~d~~~~~~~~~fD 190 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI-SLALVGADLQRQK--MTLL---HQDGLANLLVDPVD 190 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH-HHHHHHHHHHTCC--CEEE---ESCTTSCCCCCCEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHH-HHHHHHHHHhhhh--hhhh---cccccccccccccc
Confidence 46789999999999998876543 23599999999987 5555555554441 1111 22222 23456899
Q ss_pred EEEeCCcccCcccch---------------HHHHHHHHHHhhcCCCCceeeccc
Q 030558 81 LILASDILLYVKQYS---------------NLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~---------------~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+|+++..+....... ....+++...+.|+|||++++.++
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 999997752211111 123468899999999998887644
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.76 E-value=2e-08 Score=70.34 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=54.5
Q ss_pred ccccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC--CCCCccE
Q 030558 4 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--PNPDWDL 81 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~ 81 (175)
.+..++++|||||||+|.++..+++. +.+|+++|+++.++ +.++.+... .+.+.+..+|.+.+ +......
T Consensus 17 ~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~-~~l~~~~~~------~~n~~i~~~D~l~~~~~~~~~~~ 88 (235)
T d1qama_ 17 IRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLC-KTTENKLVD------HDNFQVLNKDILQFKFPKNQSYK 88 (235)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHH-HHHHHHTTT------CCSEEEECCCGGGCCCCSSCCCE
T ss_pred cCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchH-HHHHHHhhc------ccchhhhhhhhhhccccccccce
Confidence 45567999999999999999999987 78999999999887 666654322 13345555555543 2333344
Q ss_pred EEeCCcccCcc
Q 030558 82 ILASDILLYVK 92 (175)
Q Consensus 82 i~~~~~l~~~~ 92 (175)
|+++-. |+..
T Consensus 89 vv~NLP-YnIs 98 (235)
T d1qama_ 89 IFGNIP-YNIS 98 (235)
T ss_dssp EEEECC-GGGH
T ss_pred eeeeeh-hhhh
Confidence 565544 4544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=2.3e-08 Score=72.91 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=68.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhC-CCCCCcceeeccCCCCC---CCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDAF---PIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~fD~i 82 (175)
..++||.||+|.|..+..+++.. ..+|+++|+++.++ +.+++..... .....-+.+.+..+|.. ...+++||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELV-EVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHH-HHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHH-HHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 56899999999999999887764 46899999999998 6666554221 10011122333333322 2235689999
Q ss_pred EeC--CcccCcccchH--HHHHHHHHHhhcCCCCceee
Q 030558 83 LAS--DILLYVKQYSN--LIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 83 ~~~--~~l~~~~~~~~--~~~~l~~l~~~l~pgG~~~~ 116 (175)
++- +.......... -.++++.+.+.|+|||.+++
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 952 22211000111 14788999999999997766
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=8.7e-08 Score=66.98 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=67.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC--CCCCCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~ 83 (175)
..+.+++|+|+|.|-.++.+|-.. ..+|+.+|.+..-+ .-++.....-++. .+..+.-...+ ......++||+|+
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~-~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH-HHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEE
Confidence 356789999999999999998754 77899999999775 4444444443441 11111111111 1112245899999
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
+..+- .+..+++-....++++|.+++
T Consensus 147 sRAva-------~l~~ll~~~~~~l~~~g~~i~ 172 (239)
T d1xdza_ 147 ARAVA-------RLSVLSELCLPLVKKNGLFVA 172 (239)
T ss_dssp EECCS-------CHHHHHHHHGGGEEEEEEEEE
T ss_pred Ehhhh-------CHHHHHHHHhhhcccCCEEEE
Confidence 98664 333888889999999997666
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.56 E-value=2e-07 Score=66.56 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=69.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
+.++||-||.|.|..+..+.+.. ..+|+.+|+++.++ +.+++....+.-...-+.+.+..+|.. ...+++||+|+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi-~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVI-EYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHH-HHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHH-HHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 46899999999999999998754 46899999999998 666555432111111223333333322 22356899999
Q ss_pred eCCcccCcccch--HHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYS--NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~--~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-..- -..... --.+.++.+.+.|+|+|.++..
T Consensus 154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCC-CCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 74211 000000 0127889999999999977764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.55 E-value=2e-08 Score=74.91 Aligned_cols=104 Identities=14% Similarity=0.049 Sum_probs=73.9
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCc-----------ceeeccCCCC---
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPAL-----------PHIKHSWGDA--- 71 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--- 71 (175)
.++.+|||..||+|..++.++++. ..+|++.|+|+..+ +.+++|...|+..... ..+.....+.
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~-~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~ 122 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY-ELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 122 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH-HHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHH-HHHHHHHHhcCccccccccccccccccceeEeehhhhhhh
Confidence 467899999999999999877765 44799999999998 8999999888763211 0111111111
Q ss_pred CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+......||+|..-. + .+.. ..+..+.+.++.||.++++.
T Consensus 123 ~~~~~~~fDvIDiDP-f---Gs~~---pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 123 MAERHRYFHFIDLDP-F---GSPM---EFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHHSTTCEEEEEECC-S---SCCH---HHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhcCcCCcccCCC-C---CCcH---HHHHHHHHHhccCCEEEEEe
Confidence 111245799888743 2 2222 78999999999999999983
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.55 E-value=2.2e-08 Score=71.83 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=68.3
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC------CCCcceeeccCCCCCC--CCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI------TPALPHIKHSWGDAFP--IPNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~ 78 (175)
.+.++||-||+|.|..+..+.+....+|+++|+++.++ +.+++....... ...-+.+.+..+|... -..++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi-~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVI-MVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHH-HHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHH-HHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 35689999999999999988776566799999999997 666554322111 0011223333333221 12468
Q ss_pred ccEEEeCCcccCcccchH---HHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSN---LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~---~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|++-.. .....+. -.+.++.+.+.|+|+|.+++.
T Consensus 150 yDvIi~D~~--~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADST--DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEEECC--CCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCC--CCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 999997321 1111111 147899999999999987764
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.4e-07 Score=66.20 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=56.5
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
...++++|||||+|+|.++..+++. +.+|+++++++.++ +.++........ ...+....+|.+......++.|++
T Consensus 18 ~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~-~~L~~~~~~~~~---~~~~~~i~~D~l~~~~~~~~~vV~ 92 (278)
T d1zq9a1 18 ALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLV-AELHKRVQGTPV---ASKLQVLVGDVLKTDLPFFDTCVA 92 (278)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHH-HHHHHHHTTSTT---GGGEEEEESCTTTSCCCCCSEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchh-HHHHHHHhhhcc---ccchhhhHHHHhhhhhhhhhhhhc
Confidence 4456889999999999999999987 78999999999987 777665544322 133444445555544445677887
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+-.+
T Consensus 93 NLPY 96 (278)
T d1zq9a1 93 NLPY 96 (278)
T ss_dssp ECCG
T ss_pred chHH
Confidence 7553
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.54 E-value=1.3e-08 Score=70.40 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=62.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-CCCCCccEEE
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLIL 83 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~ 83 (175)
.++.+|||.|||+|.+...+.+.. ...++|+|+++..+ ...+ ....+. ++... .....||+|+
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-~~~~----------~~~~~~---~~~~~~~~~~~fd~ii 83 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-DLPP----------WAEGIL---ADFLLWEPGEAFDLIL 83 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-CCCT----------TEEEEE---SCGGGCCCSSCEEEEE
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-hhcc----------cceeee---eehhccccccccceec
Confidence 467899999999999988876543 45699999998664 1111 011111 12221 2345899999
Q ss_pred eCCcccCcccc--------------------------hHHHHHHHHHHhhcCCCCceeeccc
Q 030558 84 ASDILLYVKQY--------------------------SNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 84 ~~~~l~~~~~~--------------------------~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
++..+-..... .--..++....+.|+|||++++.++
T Consensus 84 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 84 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 98664211100 0123567888999999998887643
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.49 E-value=8.1e-09 Score=72.80 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=54.6
Q ss_pred cccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC--CCCCCccEE
Q 030558 5 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~i 82 (175)
...++++|||||||+|.++..+++. +.+|+++|+++.++ +.++.... ..+.+.+..+|.+. ++...++.|
T Consensus 26 ~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~-~~l~~~~~------~~~n~~ii~~D~l~~~~~~~~~~~v 97 (245)
T d1yuba_ 26 NLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLF-NLSSEKLK------LNTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSS-SSSSCTTT------TCSEEEECCSCCTTTTCCCSSEEEE
T ss_pred CCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccch-hhhhhhhh------hccchhhhhhhhhccccccceeeeE
Confidence 3456789999999999999999887 88999999999886 44332211 12345555555543 344466667
Q ss_pred EeCCcccCccc
Q 030558 83 LASDILLYVKQ 93 (175)
Q Consensus 83 ~~~~~l~~~~~ 93 (175)
+++-. |+...
T Consensus 98 v~NLP-Y~Ist 107 (245)
T d1yuba_ 98 VGNIP-YHLST 107 (245)
T ss_dssp EEECC-SSSCH
T ss_pred eeeee-hhhhH
Confidence 77655 45553
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.44 E-value=8.5e-08 Score=69.53 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=68.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---CCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~i~ 83 (175)
..++||-||.|.|..+..+.+... .+|+.+|+++.++ +.+++....+.....-+.+.+..+|... ...++||+|+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv-~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHH-HHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 468999999999999999988643 5799999999998 6666554332111112333333333222 2356899999
Q ss_pred eCCcccCcccch---HHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~---~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-.. .....+ --..+++.+.+.|+|||.++..
T Consensus 185 ~D~~--dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 185 TDSS--DPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp ECCC---------------HHHHHHHHEEEEEEEEEE
T ss_pred EcCC--CCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 7321 111111 1247788999999999988775
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=5.3e-08 Score=70.22 Aligned_cols=108 Identities=8% Similarity=0.026 Sum_probs=67.6
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---CCCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~i~ 83 (175)
..++||=||.|.|.....+.+.. ..+|+++|+++.++ +.+++....+.....-+.+.+..+|. +...+++||+|+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi-~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVI-EAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 46899999999999999988764 45799999999998 66555433221100112222233332 223456899999
Q ss_pred eCCcccCcccc-hH--HHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQY-SN--LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~-~~--~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-..- -.... .. -.+.++.+.+.|+|||.++..
T Consensus 168 ~D~~d-p~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCC-CCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 73211 00000 00 148899999999999988775
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.41 E-value=1.8e-07 Score=67.39 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCCccEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPDWDLI 82 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD~i 82 (175)
+.++||=||.|.|.....+.+... .+|+++|+++.++ +.+++..........-+.+....+|.. ...+++||+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi-~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVV-DVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHH-HHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 468999999999999999887644 5799999999998 666554322111011122333333321 2335689999
Q ss_pred EeCCcccCcccch---HHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~---~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.- +. .....+ --..+++.+.+.|+|||.++..
T Consensus 159 i~D-~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 159 IVD-SS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEC-CC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEc-CC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 973 21 111111 1147899999999999988875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=6.7e-07 Score=64.20 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=74.2
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~ 81 (175)
..+|.+|||+.+|.|.=+..++... ...|+++|+++.-+ ..++.+....+.. .+.....+.. ....+.||.
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~-~~l~~~~~r~g~~----~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-SRVYDNLKRLGMK----ATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-HHHHHHHHHTTCC----CEEEECCTTCTHHHHTTCCEEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh-hhHhhhhhccccc----ceeeeccccccchhcccccccE
Confidence 3568899999999999999988764 35699999999887 6677777776662 1222111111 123468999
Q ss_pred EEeCCc------ccCcccc-------------hHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 82 ILASDI------LLYVKQY-------------SNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 82 i~~~~~------l~~~~~~-------------~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
|+.-.. +...++. .-+.+++..+.+.+||||+++.++-..
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 997211 2111110 124678888899999999998885544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.34 E-value=1e-06 Score=66.73 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=72.8
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC--------------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM--------------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 72 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~--------------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (175)
..+.+|+|-.||+|.+...+.+.. ...++|+|+++.+. ..++-+....+..... .....++.+
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~-~la~~n~~l~g~~~~~--~~i~~~d~l 237 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV-TLASMNLYLHGIGTDR--SPIVCEDSL 237 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH-HHHHHHHHHTTCCSSC--CSEEECCTT
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHH-HHHHhhhhhcCCcccc--ceeecCchh
Confidence 357899999999999998776643 13599999999886 5666666665552211 122223333
Q ss_pred C-CCCCCccEEEeCCcccCcc--------------cchHHHHHHHHHHhhcCCCCceeecc
Q 030558 73 P-IPNPDWDLILASDILLYVK--------------QYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 73 ~-~~~~~fD~i~~~~~l~~~~--------------~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. ....+||+|+++..+-... ....-...++.+.+.|+|||++++++
T Consensus 238 ~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 238 EKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp TSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3 3455899999987752111 01112368999999999999888873
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2e-07 Score=66.87 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEE
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 83 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~ 83 (175)
..++||=||.|.|..+..+.+.. ..+|+.+|+++.++ +.+++....+.....-+.+....+|.. ....++||+|+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv-~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVI-QVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHH-HHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHH-HHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 46899999999999999998754 56799999999998 666554322100001122333333322 22356899999
Q ss_pred eCCcccCcccch---HHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~---~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+- +. .....+ .-.+.++.+.+.|+|||.+++.
T Consensus 157 ~D-~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 157 TD-SS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EE-CC------------CHHHHHHHHHEEEEEEEEEE
T ss_pred Ec-CC-CCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 73 21 111111 1126788999999999987775
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.24 E-value=2.1e-06 Score=62.35 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=73.6
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCC--CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC--CCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~ 81 (175)
..+|.+|||+.||+|.=+..++.... ..+++.|.++.-+ +.++.+....+. ..+.....+.. +...+.||.
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~-~~l~~~~~r~~~----~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-RETRLNLSRLGV----LNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-HHHHHHHHHHTC----CSEEEESSCGGGGGGGCCCEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHH-HHHHHHHHHHHh----hccccccccccccccccccccE
Confidence 35789999999999999988887653 4599999999887 666666666555 22333333322 234568999
Q ss_pred EEeCC------cccCccc------c-------hHHHHHHHHHHhhcCCCCceeeccccC
Q 030558 82 ILASD------ILLYVKQ------Y-------SNLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 82 i~~~~------~l~~~~~------~-------~~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
|+.-. ++...++ . ..+.+++....+.+||||+++.++-..
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 98721 1111110 1 124678889999999999888885444
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=9.9e-07 Score=62.12 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=37.3
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAY 50 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~ 50 (175)
..+++.|||||||+|.++..+++. +.+|+++|+++.++ +.++.
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~-~~L~~ 61 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLA-ARLQT 61 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHH-HHHHT
T ss_pred CCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchh-HHHHH
Confidence 456889999999999999999886 78999999999887 66654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.15 E-value=5.8e-07 Score=59.49 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=62.8
Q ss_pred cccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc-CCCCCCCCCCCccEE
Q 030558 5 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-WGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fD~i 82 (175)
...+|++||-+|+| .|..+..+++..|++|+++|.+++.+ +.+++.... ..+... ..+......+.||+|
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~-~~a~~lGa~-------~~i~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-EDAMKMGAD-------HYIATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHHHTCS-------EEEEGGGTSCHHHHSCSCEEEE
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHH-HHhhccCCc-------EEeeccchHHHHHhhhcccceE
Confidence 45679999999998 48999999888899999999999876 444432211 111111 111111224579988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+....-... ..++...++++|+|++++.
T Consensus 96 i~~~~~~~~-------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 96 VVCASSLTD-------IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EECCSCSTT-------CCTTTGGGGEEEEEEEEEC
T ss_pred EEEecCCcc-------chHHHHHHHhhccceEEEe
Confidence 864322011 1234578899999988887
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.8e-05 Score=56.73 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=68.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC--CCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--PNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~ 81 (175)
..+|.+|||+.||+|.=+..++... ...|+++|+++.-+ +.++.+....+.. .+.....+.....+. ..+.||.
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-ASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-HHHHHHHHhcCcc-ceeeeehhhhhhcccccccceeeE
Confidence 3468899999999999998887754 45699999999887 7777787777662 122221111111111 1247999
Q ss_pred EEeCCccc------Cc---------cc-----ch-HHHHHHHHHHhhcCCCCceeeccccC
Q 030558 82 ILASDILL------YV---------KQ-----YS-NLIKSLSVLLKSYKPKDSQVGHLTKN 121 (175)
Q Consensus 82 i~~~~~l~------~~---------~~-----~~-~~~~~l~~l~~~l~pgG~~~~~~~~~ 121 (175)
|+.-...- .. .. .. .+..++..+. .++|||.++.++-..
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 99732211 00 00 11 1233444444 479999888875444
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=3e-06 Score=56.62 Aligned_cols=98 Identities=11% Similarity=0.185 Sum_probs=60.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIPN 76 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 76 (175)
..++.+||||||++|.++.++++.. ...++++|..+-. . . .....+..+..+.. ....
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~---~---------i-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---P---------I-VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---C---------C-TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc---c---------c-CCceEeecccccchhhhhhhhhccC
Confidence 3467899999999999999988754 3459999997611 0 0 11122222221100 1134
Q ss_pred CCccEEEeCCcccCcccch---------HHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYS---------NLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~---------~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.+|+|++-.+. ...... -....+.-+.++|++||.|++-
T Consensus 87 ~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 87 SKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp CCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 579999985543 221111 1245566677899999988773
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.06 E-value=6.7e-06 Score=54.94 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=68.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCCccE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPDWDL 81 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~fD~ 81 (175)
..+|..++|..+|.|..+..+.+. +.+|+|+|.++.++ +.++.. .. .....+.....+ .+ ....+.+|.
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai-~~a~~~-~~----~~~~~~~~~f~~~~~~l~~~~~~~vdg 88 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAV-ARAKGL-HL----PGLTVVQGNFRHLKRHLAALGVERVDG 88 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHH-HHHHHT-CC----TTEEEEESCGGGHHHHHHHTTCSCEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHH-HHHhhc-cc----cceeEeehHHHHHHHHHHHcCCCccCE
Confidence 457899999999999999998887 67999999999997 555432 11 223333322211 01 123457999
Q ss_pred EEeCCccc--Cc----ccchHHHHHHHHHHhhcCCCCceeec
Q 030558 82 ILASDILL--YV----KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 82 i~~~~~l~--~~----~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|++---+- +. .....+...|......++|||++++.
T Consensus 89 Il~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 89 ILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp EEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 98732220 00 11123456888899999999988876
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.94 E-value=1.6e-05 Score=55.08 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=56.1
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--C-CCCCCC
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--F-PIPNPD 78 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ 78 (175)
.++++|||||++.|..++.++... ..+|+++|+++... .... . ...++..+..+..+. . ......
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~-~~~~-----~-~~~~I~~i~gDs~~~~~~~~l~~~~ 151 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC-QIPA-----S-DMENITLHQGDCSDLTTFEHLREMA 151 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC-CCCG-----G-GCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh-hhhh-----c-cccceeeeecccccHHHHHHHHhcC
Confidence 367899999999998777665432 46799999987543 1100 0 112233333332221 1 123446
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+|+|+.-+. |.... .+ .-+ ++...|+|||.+++.
T Consensus 152 ~dlIfID~~--H~~~~-v~-~~~-~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 152 HPLIFIDNA--HANTF-NI-MKW-AVDHLLEEGDYFIIE 185 (232)
T ss_dssp SSEEEEESS--CSSHH-HH-HHH-HHHHTCCTTCEEEEC
T ss_pred CCEEEEcCC--cchHH-HH-HHH-HHhcccCcCCEEEEE
Confidence 788776322 22221 11 223 356899999988774
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.92 E-value=1.8e-05 Score=54.98 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=59.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-CCCCCCccEEE
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~i~ 83 (175)
..++.+|+|||||+|..+.+++... ...|.|+|+--..-++ ...........+.+.-..+. .......|+|+
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~------P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vl 137 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE------PIPMSTYGWNLVRLQSGVDVFFIPPERCDTLL 137 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC------CCCCCSTTGGGEEEECSCCTTTSCCCCCSEEE
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC------CccccccccccccchhhhhHHhcCCCcCCEEE
Confidence 3456789999999999999998763 3468888884321000 00000001112222222332 34456899999
Q ss_pred eCCcccCccc----chHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQ----YSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~----~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
|--.- .... .+.-.++++-+.+.|+|||.|++-
T Consensus 138 cDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 138 CDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp ECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred eeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 85321 1111 112236667777899999987775
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.92 E-value=3.6e-05 Score=50.48 Aligned_cols=97 Identities=6% Similarity=0.006 Sum_probs=64.3
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---------CC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---------PI 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 74 (175)
...+|.+||=+|||. |..+..+++..|.+|+++|.++..+ +.+++.... ..+..+..... ..
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~-~~a~~~ga~-------~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKNCGAD-------VTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTTCS-------EEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH-HHHHHcCCc-------EEEeccccccccchhhhhhhcc
Confidence 456789999999985 8888999998899999999999876 444432111 01111110000 01
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
....+|+|+-... .+ ..++...++++|+|++++.-
T Consensus 95 ~g~g~D~vid~~g------~~---~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 95 IGDLPNVTIDCSG------NE---KCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SSSCCSEEEECSC------CH---HHHHHHHHHSCTTCEEEECS
T ss_pred cccCCceeeecCC------Ch---HHHHHHHHHHhcCCceEEEe
Confidence 1346898886422 22 67888999999999888873
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=1.8e-06 Score=57.74 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=63.3
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC-------CCC-C
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-------AFP-I 74 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~ 74 (175)
...+|.+||=+|+|. |..+..+++..|+ +|+++|.+++.+ +.+++. +.. ..+.....+ ..+ .
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~l----Ga~---~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEEI----GAD---LTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHHT----TCS---EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCccchhheecccccccccccccccccccc-cccccc----cce---EEEeccccchHHHHHHHHHhh
Confidence 456789999999985 9999999998887 699999999876 444432 110 111111111 011 1
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
....+|+|+-.-. .+ .+++...++++|+|++++.
T Consensus 97 ~~~g~Dvvid~vG------~~---~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 97 HGRGADFILEATG------DS---RALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TTSCEEEEEECSS------CT---THHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEeecCC------ch---hHHHHHHHHhcCCCEEEEE
Confidence 2336899886422 12 5678889999999998776
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=3.8e-05 Score=59.37 Aligned_cols=111 Identities=9% Similarity=0.039 Sum_probs=70.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC-------------------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcc-eeec
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM-------------------NLDITTSDYNDQEIEDNIAYNSTTNGITPALP-HIKH 66 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~-------------------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~-~~~~ 66 (175)
.++.+|+|-.||+|.+...+.+.. ...++|.|+++.+. ..++-+....+....+. ....
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~-~la~~nl~l~~~~~~i~~~~~~ 241 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR-RLALMNCLLHDIEGNLDHGGAI 241 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH-HHHHHHHHTTTCCCBGGGTBSE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH-HHHHHHHHhhcccccccccchh
Confidence 356789999999999997665532 12589999999886 66666666555421110 0011
Q ss_pred cCCCCCC---CCCCCccEEEeCCcccCcc-----------cchHHHHHHHHHHhhcCCCCceeecc
Q 030558 67 SWGDAFP---IPNPDWDLILASDILLYVK-----------QYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 67 ~~~~~~~---~~~~~fD~i~~~~~l~~~~-----------~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
..++.+. ....+||+|+++..+-... ....-..+++.+.+.|+|||++.+++
T Consensus 242 ~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 242 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 1122221 2345799999987752111 01112358999999999999988873
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=1.3e-05 Score=52.78 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=63.3
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-------CCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIP 75 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 75 (175)
...++.+||=+|||+ |..+..+++..+. +|+++|.++.-+ +.+++. +.. ..+.....+.. ...
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl-~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL-SKAKEI----GAD---LVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT----TCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHH-HHHHHh----CCc---ccccccccccccccccccccC
Confidence 345788999999986 8888888888777 699999999876 444422 220 01110000000 011
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
...+|+|+-.-. .+ .+++...++++|||++++.-
T Consensus 95 g~g~Dvvid~~G------~~---~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 95 GCKPEVTIECTG------AE---ASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp TSCCSEEEECSC------CH---HHHHHHHHHSCTTCEEEECS
T ss_pred CCCceEEEeccC------Cc---hhHHHHHHHhcCCCEEEEEe
Confidence 346899887533 22 67888999999999888873
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.57 E-value=4.1e-05 Score=51.58 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=64.5
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-CC
Q 030558 4 REWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-IP 75 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~ 75 (175)
....+|.+||-+|||. |..+..+++..+. +|+++|.++..+ +.+++. +. ..+......+. . ..
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~----Ga----~~~~~~~~~~~~~~i~~~t~ 91 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQ----GF----EIADLSLDTPLHEQIAALLG 91 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT----TC----EEEETTSSSCHHHHHHHHHS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhhc----cc----cEEEeCCCcCHHHHHHHHhC
Confidence 3567899999999997 8788888876554 799999999876 444432 12 11110000100 0 12
Q ss_pred CCCccEEEeCCccc------CcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILL------YVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~------~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+|+++-.--.. ..........+++...++++|+|++.+.
T Consensus 92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 34689888532210 0011111227899999999999999887
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=7.9e-05 Score=49.02 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=62.6
Q ss_pred cccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC---C--CCCCC
Q 030558 5 EWIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---F--PIPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~ 77 (175)
...+|.+||=.|+ | .|..+..+++..+++|++++.+++.. +.+++ .+.. ..+...-.+. . ....+
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~----~Ga~---~vi~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQ----NGAH---EVFNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCS---EEEETTSTTHHHHHHHHHCTT
T ss_pred CCCCCCEEEEEeccccccccccccccccCccccccccccccc-ccccc----cCcc---cccccccccHHHHhhhhhccC
Confidence 4557899999996 4 58999999999899999999888664 44432 2221 1111111110 0 01245
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+.+.. . ..++...++++|+|+++..
T Consensus 97 g~d~v~d~~g-------~---~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 97 GIDIIIEMLA-------N---VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CEEEEEESCH-------H---HHHHHHHHHEEEEEEEEEC
T ss_pred CceEEeeccc-------H---HHHHHHHhccCCCCEEEEE
Confidence 7999987421 1 5678889999999988876
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.51 E-value=1.1e-05 Score=52.72 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=66.0
Q ss_pred cCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 7 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 7 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
.++.+|+=||+|. |..++..|+..|.+|+++|.+++.+ +.++...... . ... ....+.+...-...|+|+..
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l-~~l~~~~~~~-~----~~~-~~~~~~l~~~~~~aDivI~a 102 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERL-SYLETLFGSR-V----ELL-YSNSAEIETAVAEADLLIGA 102 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHGGG-S----EEE-ECCHHHHHHHHHTCSEEEEC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHH-HHHHHhhccc-c----eee-hhhhhhHHHhhccCcEEEEe
Confidence 3578999999996 9999999999999999999999887 5544333221 1 111 00000111112357999998
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.+ +....+.-+-+++.+.+|||..++=.
T Consensus 103 ali---pG~~aP~lIt~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 103 VLV---PGRRAPILVPASLVEQMRTGSVIVDV 131 (168)
T ss_dssp CCC---TTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred eec---CCcccCeeecHHHHhhcCCCcEEEEe
Confidence 776 33323335557899999999855544
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.48 E-value=0.00021 Score=49.77 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=49.9
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHH---HHHHHHHHHhhCCCC-CCcceeeccCCCC---CCCCCCCccEE
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQE---IEDNIAYNSTTNGIT-PALPHIKHSWGDA---FPIPNPDWDLI 82 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~---l~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~fD~i 82 (175)
.+|||.=||.|..+..+|.. |++|++++.++.. +++++++........ .....+++..++. +......||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 37999999999999999987 8899999999965 323333332211110 0122344444442 33334579999
Q ss_pred EeCCcc
Q 030558 83 LASDIL 88 (175)
Q Consensus 83 ~~~~~l 88 (175)
+.-.++
T Consensus 169 YlDPMF 174 (250)
T d2oyra1 169 YLDPMF 174 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 986654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.47 E-value=1.9e-05 Score=52.24 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=63.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---C-CC-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---A-FP-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~~ 77 (175)
...+|.+||=+|||. |..+..+++..+. +|+++|.+++-+ +.+++.... ..+...-.+ . .. ....
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~-~~a~~lGa~-------~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICV-EAAKFYGAT-------DILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHH-HHHHHHTCS-------EEECGGGSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhH-HHHHhhCcc-------ccccccchhHHHHHHHHhhcc
Confidence 456788999999986 9999999998876 699999999775 444422111 111111100 0 01 1234
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-.- + .++++..++++|+|++++.
T Consensus 96 G~D~vid~~g~------~---~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 96 GVDRVIMAGGG------S---ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CEEEEEECSSC------T---THHHHHHHHEEEEEEEEEC
T ss_pred CcceEEEccCC------H---HHHHHHHHHHhcCCEEEEE
Confidence 69998875321 2 5677888999999998886
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.42 E-value=5.7e-05 Score=49.29 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=59.5
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCCc
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPDW 79 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~f 79 (175)
...+|.+||=+|+|. |..+..+++..|.+|+++|.++..+ +.+++. +.. ..+.....+.. ....+.+
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~-~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~g~~ 95 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKL-ELARKL----GAS---LTVNARQEDPVEAIQRDIGGAH 95 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHT----TCS---EEEETTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHH-Hhhhcc----Ccc---ccccccchhHHHHHHHhhcCCc
Confidence 456788999999986 8888999998899999999999776 444322 220 11111111100 0012223
Q ss_pred cEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 80 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 80 D~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.|..... + ..++...+.++|+|++++.
T Consensus 96 ~~i~~~~~-------~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 96 GVLVTAVS-------N---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEECCSC-------H---HHHHHHHTTEEEEEEEEEC
T ss_pred cccccccc-------c---hHHHHHHHHhcCCcEEEEE
Confidence 34443211 2 5678899999999998876
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.34 E-value=0.00051 Score=45.12 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=64.5
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------CCC
Q 030558 4 REWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PIP 75 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~-~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 75 (175)
....+|.+||=+|||. |..+..+++..+. .|+++|.++.-+ +.+++.... ..+.....+.. ...
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALGAT-------DCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCS-------EEECGGGCSSCHHHHHHHHH
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhCCC-------cccCCccchhhhhhhHhhhh
Confidence 4566789999999997 9999999998876 599999999775 444432111 11111111111 012
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCC-Cceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pg-G~~~~~ 117 (175)
.+.+|+++-.-- .+ .++++..+.++|+ |++++.
T Consensus 96 ~~G~d~vie~~G------~~---~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 96 AGGVDYSLDCAG------TA---QTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp TSCBSEEEESSC------CH---HHHHHHHHTBCTTTCEEEEC
T ss_pred cCCCcEEEEecc------cc---hHHHHHHHHhhcCCeEEEec
Confidence 357899876432 22 7889999999996 988887
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=4.9e-05 Score=49.79 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=63.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
+..+|++||=+|||. |.++..+++..+.+++++|.+++.. +.+++.... ..+.....+......+.+|+++
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~~lGad-------~~i~~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGAD-------EVVNSRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHTCS-------EEEETTCHHHHHTTTTCEEEEE
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-HHHhccCCc-------EEEECchhhHHHHhcCCCceee
Confidence 456789999999986 9999999998899999999998765 444432211 1111111011112235799888
Q ss_pred eCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 84 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-.-.- . ..++...+.++|+|++++.
T Consensus 99 d~~g~---~------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 99 NTVAA---P------HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ECCSS---C------CCHHHHHTTEEEEEEEEEC
T ss_pred eeeec---c------hhHHHHHHHHhcCCEEEEe
Confidence 65321 1 3456678899999988887
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.29 E-value=0.00012 Score=48.35 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=63.6
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCC--CCcceeeccCC--CCC--CC----
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT--PALPHIKHSWG--DAF--PI---- 74 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~--~~---- 74 (175)
-.++.+|+=||+|. |..+...|...|++|+++|.++..+ +.++......-.. .........-+ ..+ ++
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~-~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~ 104 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATK-EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ 104 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTH-HHHHHTTCEECCC-----------------------CCH
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHH-HHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence 34678999999997 8999999999999999999999876 4544322111000 00000000000 000 00
Q ss_pred ------CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 ------PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ------~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.-..-|+|+..-.+ +....+.-+-+++.+.+|||..++=.
T Consensus 105 ~~~l~~~l~~aDlVI~tali---pG~~aP~lit~~mv~~Mk~GSVIVDv 150 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALI---PGKPAPVLITEEMVTKMKPGSVIIDL 150 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCC---TTSCCCCCSCHHHHTTSCTTCEEEET
T ss_pred HHHHHHHHHhhhhheeeeec---CCcccceeehHHHHHhcCCCcEEEEE
Confidence 01257999988776 32222224557899999999855544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.17 E-value=0.00037 Score=45.72 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=61.9
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----CCCCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----PIPNPD 78 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 78 (175)
...+|.+||=+|||. |..+..+++..+.+ |+++|.++.-+ +.+++.... ..+.....+.. ...++.
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~Ga~-------~~i~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQLGAT-------HVINSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHHTCS-------EEEETTTSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHH-HHHHHcCCe-------EEEeCCCcCHHHHHHHHcCCC
Confidence 456789999999986 77788888776664 77889999776 444432111 11111111100 122457
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
||+|+-.-. .+ ..++...++++|+|++++.
T Consensus 97 ~D~vid~~G------~~---~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 97 VNFALESTG------SP---EILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEEEECSC------CH---HHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEEcCC------cH---HHHHHHHhcccCceEEEEE
Confidence 999886422 22 6778889999999988876
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.10 E-value=0.00043 Score=44.88 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=59.6
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-CCCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 77 (175)
...+|++||=.|+|+ |..+..+++..+.+|+++|.++..+ +.++.. +. ..+ .+..+.. . ...+
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~-~~~k~~----Ga----~~~-~~~~~~~~~~~~~~~~~~ 93 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKL-ELAKEL----GA----DLV-VNPLKEDAAKFMKEKVGG 93 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHH-HHHHHT----TC----SEE-ECTTTSCHHHHHHHHHSS
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHh-hhhhhc----Cc----cee-cccccchhhhhcccccCC
Confidence 355788999999986 8888888898889999999999776 444432 22 111 1111110 0 0122
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+.. . .+ ..++...++++|+|++++.
T Consensus 94 ~~~~v~~~-~------~~---~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 94 VHAAVVTA-V------SK---PAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEEEESS-C------CH---HHHHHHHHHEEEEEEEEEC
T ss_pred CceEEeec-C------CH---HHHHHHHHHhccCCceEec
Confidence 33444322 1 12 6788999999999998886
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.02 E-value=0.00053 Score=50.16 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=67.0
Q ss_pred CcEEEeCCCccHHHHHHHHh-----------C------CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC
Q 030558 10 RRCIELGSGTGALAIFLRKA-----------M------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 72 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~-----------~------~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (175)
-+|.|+||.+|..++.+.+. . ..+|...|...+.. -.+=+.+....-.....++....+...
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDF-NtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDF-NAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCH-HHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchH-HHHHHhccccccCCCCeEEEecCCchh
Confidence 56999999999988422111 0 22588889887664 222222222111111112222223332
Q ss_pred C--CCCCCccEEEeCCcccCcccc-------------------------------hHHHHHHHHHHhhcCCCCceeeccc
Q 030558 73 P--IPNPDWDLILASDILLYVKQY-------------------------------SNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 73 ~--~~~~~fD~i~~~~~l~~~~~~-------------------------------~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
. +++++.|+++++.++ ||.+. .++..+|+.-.+-|.|||+++++..
T Consensus 132 ~rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 2 678899999999998 55431 2567788888899999999999854
Q ss_pred cC
Q 030558 120 KN 121 (175)
Q Consensus 120 ~~ 121 (175)
+.
T Consensus 211 gr 212 (359)
T d1m6ex_ 211 GR 212 (359)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.00 E-value=0.0051 Score=40.05 Aligned_cols=97 Identities=18% Similarity=0.043 Sum_probs=59.8
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------CCC
Q 030558 4 REWIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PIP 75 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 75 (175)
....+|.+||=+|||. |..+..+++..+ .+|+++|.+++-+ +.+++. +.. ..+.....+.. ...
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~l----Ga~---~~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIEL----GAT---ECLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHT----TCS---EEECGGGCSSCHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHc----CCc---EEEcCCCchhHHHHHHHHhc
Confidence 4567899999999986 777777777666 4799999999886 454432 221 11211111111 112
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCC-CCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKP-KDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~p-gG~~~~~ 117 (175)
.+.+|+|+-.-.- . .++++....+++ +|++++.
T Consensus 95 ~~G~d~vid~~g~------~---~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 95 NGGVDYAVECAGR------I---ETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp TSCBSEEEECSCC------H---HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCcEEEEcCCC------c---hHHHHHHHHHHHhcCceEEE
Confidence 3468988864321 2 566667766655 5877776
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.90 E-value=0.00031 Score=46.34 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=61.6
Q ss_pred ccCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEE
Q 030558 6 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLI 82 (175)
Q Consensus 6 ~~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i 82 (175)
..+|.+||=-|+ |.|..+..+++..|.+|+++--+++.. +.++.. +....+.. .-.+.+. .....+.+|+|
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~-~~~~~l----Ga~~vi~~-~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLRVL----GAKEVLAR-EDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHHHHT----TCSEEEEC-C---------CCSCCEEEE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH-HHHHhc----ccceeeec-chhHHHHHHHhhccCcCEE
Confidence 345788998885 568999999999999999999988775 444432 22111111 0011111 12234589988
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+-+-.= ..+++..++|+|+|+++..-
T Consensus 103 id~vgg----------~~~~~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 103 VDPVGG----------RTLATVLSRMRYGGAVAVSG 128 (176)
T ss_dssp EECSTT----------TTHHHHHHTEEEEEEEEECS
T ss_pred EEcCCc----------hhHHHHHHHhCCCceEEEee
Confidence 875221 45678999999999888773
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.0012 Score=47.68 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=36.0
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHH
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~ 52 (175)
++.+|||||.|.|.+|..+....+ .+|+++|+++... +.++...
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~-~~L~~~~ 87 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY-KFLNAKF 87 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH-HHHHHHT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHhc
Confidence 467899999999999999987643 5799999999876 6666543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.89 E-value=0.0044 Score=44.24 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=36.1
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHH
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNS 52 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~ 52 (175)
.+.+.+||||=||.|.++.-|.+. |.+ |.++|+++.++ +..+.|.
T Consensus 8 ~~~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~-~~~~~N~ 53 (327)
T d2c7pa1 8 QLTGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQ-EVYEMNF 53 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHH-HHHHHHH
T ss_pred cCCCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHH-HHHHHHC
Confidence 346789999999999999998666 555 68899999887 6666564
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.66 E-value=0.0011 Score=43.26 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=61.1
Q ss_pred CCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeC
Q 030558 8 ERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 85 (175)
Q Consensus 8 ~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (175)
++.+||=-|+ |.|..+..+|+..|++|+++.-+++.. +.++..... ..+..-...+........+.+|+|+-.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~-~~~~~lGad----~vi~~~~~~~~~~~~~~~~gvd~vid~ 97 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA-DYLKQLGAS----EVISREDVYDGTLKALSKQQWQGAVDP 97 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH-HHHHHHTCS----EEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH-HHHHhhccc----ceEeccchhchhhhcccCCCceEEEec
Confidence 4556776663 469999999999999999999988765 444432211 011111111122223345579998765
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
-. . ..+++..++|+|+|++++.
T Consensus 98 vg-------g---~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 98 VG-------G---KQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CC-------T---HHHHHHHTTEEEEEEEEEC
T ss_pred Cc-------H---HHHHHHHHHhccCceEEEe
Confidence 22 1 6778899999999988876
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.53 E-value=0.00044 Score=45.22 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=60.4
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----CC-CCCCC
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----FP-IPNPD 78 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~ 78 (175)
..+|.+||=+|+|. |..+..+++..+ ..|+++|.+++.+ +.+++. +.. ..+... .+. .. .....
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~-~~~~~~----ga~---~~i~~~-~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL-KLAERL----GAD---HVVDAR-RDPVKQVMELTRGRG 100 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH-HHHHHT----TCS---EEEETT-SCHHHHHHHHTTTCC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHH-HHHhhc----ccc---eeecCc-ccHHHHHHHhhCCCC
Confidence 45788999999986 777777777555 5789999999765 444422 110 111111 010 01 12346
Q ss_pred ccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 79 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 79 fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
+|+|+-...- + ..++...+.++++|++++.-
T Consensus 101 ~d~vid~~g~------~---~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 101 VNVAMDFVGS------Q---ATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEEEESSCC------H---HHHHHGGGGEEEEEEEEECC
T ss_pred ceEEEEecCc------c---hHHHHHHHHHhCCCEEEEEe
Confidence 8988865332 2 56888999999999998863
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.00056 Score=44.84 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=61.7
Q ss_pred cccCCCcEEEeCCC--ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCC
Q 030558 5 EWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~ 77 (175)
...+|.+||=.|+| .|..+..+++..+.+|+++|.+++.. +.++... .. ..+.....+ .. . ....
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~-~~~~~lG----a~---~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA-QSALKAG----AW---QVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHHHT----CS---EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHH-HHHHhcC----Ce---EEEECCCCCHHHHHHHHhCCC
Confidence 45678899988664 58888999998899999999999876 4544322 20 111111111 00 0 1245
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-.- ..++...++++|+|++++.
T Consensus 97 g~d~v~d~~g~----------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 97 KVRVVYDSVGR----------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp CEEEEEECSCG----------GGHHHHHHTEEEEEEEEEC
T ss_pred CeEEEEeCccH----------HHHHHHHHHHhcCCeeeec
Confidence 78988774321 3567788999999987765
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.45 E-value=0.0079 Score=39.19 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=59.0
Q ss_pred cccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----C-CCC
Q 030558 5 EWIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----P-IPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~ 76 (175)
...+|++|+=+|||. |..+..+++..+ .+|+++|.+++.+ +.+++..... .+...-.+.. . ...
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-~~Ak~~GA~~-------~in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF-EKAMAVGATE-------CISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHHTCSE-------EECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH-HHHHhcCCcE-------EECccccchHHHHHHHHhcc
Confidence 466789999999985 888888888776 5799999999887 5554433221 1111111110 0 123
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhc-CCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l-~pgG~~~~~ 117 (175)
..+|+++-...- + .+++.....+ +++|++++.
T Consensus 98 ~G~d~vi~~~g~------~---~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 98 NNVGYTFEVIGH------L---ETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp SCCCEEEECSCC------H---HHHHHHHTTSCTTTCEEEEC
T ss_pred ccceEEEEeCCc------h---HHHHHHHHHhhcCCeEEEEE
Confidence 468988765332 1 4455555555 455887776
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.37 E-value=0.00027 Score=46.34 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=58.9
Q ss_pred cccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEE
Q 030558 5 EWIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 82 (175)
Q Consensus 5 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 82 (175)
...+|++||=.|+ | .|..+..+++..|++|++++.+++.. +.++.. +.. ..+..............+|+|
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~-~~~~~l----Ga~---~~i~~~~~~~~~~~~~g~D~v 95 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL-ALPLAL----GAE---EAATYAEVPERAKAWGGLDLV 95 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS-HHHHHT----TCS---EEEEGGGHHHHHHHTTSEEEE
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccccccccccccccccc-cccccc----ccc---eeeehhhhhhhhhcccccccc
Confidence 4567899998884 5 48888999999899999999988765 443321 220 111111000000123468998
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-. . . ..++...++++|+|+++..
T Consensus 96 ~d~--~---G------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 96 LEV--R---G------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEC--S---C------TTHHHHHTTEEEEEEEEEC
T ss_pred ccc--c---c------hhHHHHHHHHhcCCcEEEE
Confidence 862 2 1 2246678899999988875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.35 E-value=0.00057 Score=44.93 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=61.3
Q ss_pred cccCCCcEEEeCC-C-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-C-CCCC
Q 030558 5 EWIERRRCIELGS-G-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-P-IPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~ 77 (175)
...+|++||=.|+ | .|..+..+++..++++++++-+++.. +.+++ .+.. ..+.....+ .. . ....
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~-~~l~~----~Ga~---~vi~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSR----LGVE---YVGDSRSVDFADEILELTDGY 93 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHT----TCCS---EEEETTCSTHHHHHHHHTTTC
T ss_pred CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccc-ccccc----cccc---ccccCCccCHHHHHHHHhCCC
Confidence 4556889998773 4 58889999998899999998887664 44442 2331 111111111 00 1 1235
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.||+|+.... . ..++.+.++|+++|+++..
T Consensus 94 g~d~v~d~~g-------~---~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 94 GVDVVLNSLA-------G---EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CEEEEEECCC-------T---HHHHHHHHTEEEEEEEEEC
T ss_pred CEEEEEeccc-------c---hHHHHHHHHhcCCCEEEEE
Confidence 7999997432 1 5677788999999988875
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.10 E-value=0.0048 Score=43.63 Aligned_cols=45 Identities=4% Similarity=0.079 Sum_probs=36.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 53 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~ 53 (175)
.+|..|||.=||+|..+..+.+ .+.+.+|+|+++..+ +.+++.+.
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~-~~a~~Rl~ 293 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYV-AASAFRFL 293 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHH-HHHHGGGS
T ss_pred cCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHH-HHHHHHHH
Confidence 4689999999999998877755 499999999999987 55554443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.08 E-value=0.0073 Score=39.44 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=62.0
Q ss_pred cccCCCcEEEeCCC--ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC-----CCCCC
Q 030558 5 EWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIPNP 77 (175)
Q Consensus 5 ~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 77 (175)
...+|++||=.|++ .|..+..+++..+++|++++-+++.. +.++.. +.. ..+.....+.. .....
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~-~~~~~~----Ga~---~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-AYLKQI----GFD---AAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT----TCS---EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHH-HHHHhh----hhh---hhcccccccHHHHHHHHhhcC
Confidence 45678999977774 58888899999999999999988765 444432 220 11111111100 11234
Q ss_pred CccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 78 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 78 ~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+|+|+-.-. . +.+++..++++|+|+++..
T Consensus 98 Gvd~v~D~vG-------~---~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 98 GYDCYFDNVG-------G---EFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CEEEEEESSC-------H---HHHHHHGGGEEEEEEEEEC
T ss_pred CCceeEEecC-------c---hhhhhhhhhccCCCeEEee
Confidence 6899887421 1 6778999999999988876
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.91 E-value=0.0022 Score=41.52 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=60.2
Q ss_pred cccCCCcEEEeCC-C-ccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC----CC-CCC
Q 030558 5 EWIERRRCIELGS-G-TGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA----FP-IPN 76 (175)
Q Consensus 5 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~ 76 (175)
...++.+||=+|| | .|..+..+++..+ ..|+++|.+++-+ +.+++.... ..+.....+. .. ...
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~~Ga~-------~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRAGAD-------YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHHTCS-------EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhH-HHHHHcCCc-------eeeccCCcCHHHHHHHHhhc
Confidence 4567889999996 4 4777777767555 6899999999765 444432111 1111111110 00 123
Q ss_pred CCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 77 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 77 ~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+.||+|+-... .+ .+++...+.++|+|++++.
T Consensus 96 ~~~d~vid~~g------~~---~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 96 KGVDAVIDLNN------SE---KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCEEEEEESCC------CH---HHHTTGGGGEEEEEEEEEC
T ss_pred ccchhhhcccc------cc---hHHHhhhhhcccCCEEEEe
Confidence 46998887532 22 6677889999999988876
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.86 E-value=0.009 Score=41.39 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=37.5
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhh
Q 030558 7 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT 54 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~ 54 (175)
.+|..|||.=||+|..+....+. +.+.+|+|+++..+ +.+++++..
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~-~~a~~Ri~~ 251 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFK-EYYQKQLTF 251 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHH-HHHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHH-HHHHHHHHH
Confidence 37889999999999988877555 99999999999887 555555543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.83 E-value=0.046 Score=35.04 Aligned_cols=97 Identities=14% Similarity=0.026 Sum_probs=61.2
Q ss_pred ccccCCCcEEEeCCC-ccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------CCC
Q 030558 4 REWIERRRCIELGSG-TGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PIP 75 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG-~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 75 (175)
....+|.+||=.||| .|..+..+++..+ ..|+++|.++..+ +.+++.... ..+...-.+.. ...
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEFGAT-------ECINPQDFSKPIQEVLIEMT 95 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHHTCS-------EEECGGGCSSCHHHHHHHHT
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHhCCc-------EEEeCCchhhHHHHHHHHHc
Confidence 356789999999997 4777777777666 5699999999775 554432211 11111110000 112
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+|+|+-.-- .+ .+++....++++||.+.+.
T Consensus 96 ~~g~D~vid~~G------~~---~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 96 DGGVDYSFECIG------NV---KVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp TSCBSEEEECSC------CH---HHHHHHHHTBCTTTCEEEE
T ss_pred CCCCcEeeecCC------CH---HHHHHHHHhhcCCceeEEE
Confidence 357899987522 22 6778888999999877655
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.79 E-value=0.017 Score=36.89 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=49.5
Q ss_pred cEEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 11 RCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
||.=||+|. | .++..+++. +.+|+++|.+++.+ +.++. .+. +... . +... .-...|+|+.+-.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~-~~a~~----~~~---~~~~-~---~~~~-~~~~~DiIilavp- 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTC-EKAVE----RQL---VDEA-G---QDLS-LLQTAKIIFLCTP- 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHH----TTS---CSEE-E---SCGG-GGTTCSEEEECSC-
T ss_pred EEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHH-HHHHH----hhc---ccee-e---eecc-cccccccccccCc-
Confidence 455678875 3 445556444 88999999998776 33322 111 0000 0 1111 1235688886422
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
......+++++...++++..+.
T Consensus 67 -----~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 67 -----IQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp -----HHHHHHHHHHHGGGSCTTCEEE
T ss_pred -----Hhhhhhhhhhhhhhccccccee
Confidence 3356689999998888886443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.76 E-value=0.02 Score=36.74 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=51.7
Q ss_pred cEEEeCCCc--cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 11 RCIELGSGT--GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 11 ~vLDlGcG~--G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
+|+=||||. |+++..+.+.. ..+|+++|.+++.+ +.+++.. .. .... .+.........|+|+.+-.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~-~~a~~~~---~~----~~~~---~~~~~~~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESI-SKAVDLG---II----DEGT---TSIAKVEDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH-HHHHHTT---SC----SEEE---SCGGGGGGTCCSEEEECSC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHH-HHHHHhh---cc----hhhh---hhhhhhhccccccccccCC
Confidence 477789986 44556665542 34799999999886 4443221 11 1110 0111122335788887633
Q ss_pred ccCcccchHHHHHHHHHHhhcCCCCcee
Q 030558 88 LLYVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
......+++++...++++..+.
T Consensus 72 ------~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 72 ------VRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ------HHHHHHHHHHHHHHSCTTCEEE
T ss_pred ------chhhhhhhhhhhcccccccccc
Confidence 3345588899999998875443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.013 Score=38.17 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=58.6
Q ss_pred CCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC-CCCCCCCccEEEeC
Q 030558 9 RRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 85 (175)
Q Consensus 9 ~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i~~~ 85 (175)
+.+||=.|+ |.|..++.+++..|.+|+++.-+++.. +.++..... ..+..+..+. .......+|.|+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~-~~~~~lGad-------~vi~~~~~~~~~~l~~~~~~~vv-- 101 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH-EYLKSLGAS-------RVLPRDEFAESRPLEKQVWAGAI-- 101 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH-HHHHHHTEE-------EEEEGGGSSSCCSSCCCCEEEEE--
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHH-HHHHhhccc-------cccccccHHHHHHHHhhcCCeeE--
Confidence 446775553 468888999999999999999999875 554433222 1122221111 123445688875
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++. . . ..+.+..+.++++|+++..
T Consensus 102 D~V---g--g---~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 102 DTV---G--D---KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp ESS---C--H---HHHHHHHHTEEEEEEEEEC
T ss_pred EEc---c--h---HHHHHHHHHhccccceEee
Confidence 333 2 1 5788999999999988886
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.31 E-value=0.015 Score=42.34 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.6
Q ss_pred CCcEEEeCCCccHHHHHHHHhC--------CCcEEEEeCChHH
Q 030558 9 RRRCIELGSGTGALAIFLRKAM--------NLDITTSDYNDQE 43 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~--------~~~v~~~D~s~~~ 43 (175)
..+|+|+|+|+|.++..+.... ..+++.++.|+..
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L 122 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 122 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence 4579999999999997765543 2358999999975
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=95.29 E-value=0.031 Score=41.14 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=40.0
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCC
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGI 57 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~ 57 (175)
..++..++|+|+-.|..+..+++.. ..+|+++++++... +.++++...+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~-~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-QTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-HHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHH-HHHHHHHHhccc
Confidence 3467889999999999988776543 35799999999886 777777776554
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.058 Score=37.08 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=49.8
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 73 (175)
.++|+.+|=-|++.|. +..+++.+ |.+|+.+|.+++.+ +.+...+...+...++..+..+..+...
T Consensus 7 ~lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNI-EELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GGTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 4689999999987654 44443333 88999999999887 4554455554443334444555543211
Q ss_pred CCCCCccEEEeCCcc
Q 030558 74 IPNPDWDLILASDIL 88 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l 88 (175)
..-+..|+++.+...
T Consensus 85 ~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 85 SQHSGVDICINNAGL 99 (257)
T ss_dssp HHHCCCSEEEECCCC
T ss_pred HhcCCCCEEEecccc
Confidence 012468888876544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.11 E-value=0.043 Score=35.29 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=52.6
Q ss_pred CcEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccC--CCCCCCCCCCccEEEeC
Q 030558 10 RRCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW--GDAFPIPNPDWDLILAS 85 (175)
Q Consensus 10 ~~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~fD~i~~~ 85 (175)
++|.=||+|. |... ..|++. |.+|+.+|.++..+ +..+................... ..+....-...|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 6777889987 3333 445554 88999999998776 44332211100000000000000 01111112357888874
Q ss_pred CcccCcccchHHHHHHHHHHhhcCCCCceee
Q 030558 86 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 116 (175)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~ 116 (175)
-- ......+++++...++++..+++
T Consensus 80 v~------~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 VP------AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp SC------GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred Ec------hhHHHHHHHHhhhccCCCCEEEE
Confidence 22 22345889999999998865443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.93 E-value=0.17 Score=32.23 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=57.8
Q ss_pred ccccCCCcEEEeCCCc-cHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------CCC
Q 030558 4 REWIERRRCIELGSGT-GALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PIP 75 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 75 (175)
....+|.+||=+|+|. |..+..+++..+ ..|+++|.+++-. +.+++.... ..+.....+.. ...
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~-~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAKEVGAT-------ECVNPQDYKKPIQEVLTEMS 95 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCS-------EEECGGGCSSCHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH-HHHHHhCCe-------eEEecCCchhHHHHHHHHHh
Confidence 3567889999999975 555566666554 6899999999876 454433211 11111111110 112
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
.+.+|+|+-.... + ..++.....++++|..++.
T Consensus 96 ~~G~D~vid~~G~------~---~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 96 NGGVDFSFEVIGR------L---DTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp TSCBSEEEECSCC------H---HHHHHHHHHBCTTTCEEEE
T ss_pred cCCCCEEEecCCc------h---hHHHHHHHHHhcCCcceEE
Confidence 3578998875443 2 5566777788887544444
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.92 E-value=0.048 Score=38.29 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=44.3
Q ss_pred cEEEeCCCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 11 RCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
+|+||=||.|.+++-+.+. |.+ +.++|+++... +..+.|... ..+..+..+.....-...|++++....
T Consensus 2 k~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~-~~~~~N~~~-------~~~~~Di~~~~~~~~~~~dll~~g~PC 71 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIW-KTYESNHSA-------KLIKGDISKISSDEFPKCDGIIGGPPC 71 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHH-HHHHHHCCS-------EEEESCTTTSCGGGSCCCSEEEECCCC
T ss_pred eEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHH-HHHHHHCCC-------CCccCChhhCCHhHcccccEEeecccc
Confidence 6999999999999888776 555 67999999886 555555321 122223322222122368999986544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.41 E-value=0.024 Score=37.08 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=54.5
Q ss_pred cccCCCcEEEe--CCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeecc---CCCCC------
Q 030558 5 EWIERRRCIEL--GSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS---WGDAF------ 72 (175)
Q Consensus 5 ~~~~~~~vLDl--GcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------ 72 (175)
...+|.++|=+ |.| .|..+..+|+..|.+|+++--+++..++..+.. ...+.. ..+..+ ..+..
T Consensus 25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~-~~lGad---~vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASL-KELGAT---QVITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHH-HHHTCS---EEEEHHHHHCGGGHHHHHHH
T ss_pred CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhh-hhcccc---EEEeccccchhHHHHHHHHH
Confidence 45567777776 323 477778899988999988755444332222221 222221 111111 10000
Q ss_pred -CCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 73 -PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 73 -~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
....+.+|+|+-. + . . ..+....++|+|+|+++..
T Consensus 101 ~~~~g~~vdvv~D~--v---g--~---~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 101 IKQSGGEAKLALNC--V---G--G---KSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHTCCEEEEEES--S---C--H---HHHHHHHHTSCTTCEEEEC
T ss_pred HhhccCCceEEEEC--C---C--c---chhhhhhhhhcCCcEEEEE
Confidence 0113468888843 2 2 1 4567788999999988765
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.96 E-value=0.14 Score=29.48 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=27.3
Q ss_pred ccccCCCcEEEeCC-CccHHH--HHHHHhCCCcEEEEeCChHH
Q 030558 4 REWIERRRCIELGS-GTGALA--IFLRKAMNLDITTSDYNDQE 43 (175)
Q Consensus 4 ~~~~~~~~vLDlGc-G~G~~~--~~l~~~~~~~v~~~D~s~~~ 43 (175)
|.....++|.=||. |+|..+ ..+.+. |.+|+|.|.....
T Consensus 3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~~~~~ 44 (96)
T d1p3da1 3 PEMRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDIADGV 44 (96)
T ss_dssp CCCTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEESCCSH
T ss_pred ccchhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeCCCCh
Confidence 44556788888876 566555 445444 9999999997543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.89 E-value=0.078 Score=30.24 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=34.9
Q ss_pred cEEEeCC-CccHHH--HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCc
Q 030558 11 RCIELGS-GTGALA--IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 87 (175)
Q Consensus 11 ~vLDlGc-G~G~~~--~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (175)
||.=+|- |+|.-+ ..+ +..|.+|+|.|..+....+. ++..+. + +. .+.... .-...|+|+.+..
T Consensus 3 ~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~~----L~~~Gi----~-i~--~gh~~~-~i~~~d~vV~SsA 69 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTAY----LRKLGI----P-IF--VPHSAD-NWYDPDLVIKTPA 69 (89)
T ss_dssp EEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH----HHHTTC----C-EE--SSCCTT-SCCCCSEEEECTT
T ss_pred EEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHHH----HHHCCC----e-EE--eeeccc-ccCCCCEEEEecC
Confidence 3444443 455544 445 44499999999987443233 344444 1 11 111111 1135799888888
Q ss_pred c
Q 030558 88 L 88 (175)
Q Consensus 88 l 88 (175)
+
T Consensus 70 I 70 (89)
T d1j6ua1 70 V 70 (89)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.71 E-value=0.045 Score=35.66 Aligned_cols=91 Identities=8% Similarity=0.061 Sum_probs=55.0
Q ss_pred CcEEEeC--CCccHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCC---CC-CCCCCCccEE
Q 030558 10 RRCIELG--SGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---AF-PIPNPDWDLI 82 (175)
Q Consensus 10 ~~vLDlG--cG~G~~~~~l~~~~~~~-v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~fD~i 82 (175)
.+||=.| .|.|..++.+|+..+++ |++++.+++.. ..+.+. .+.. ..+.....+ .. ...+..+|+|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~-~~l~~~---~gad---~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC-LFLTSE---LGFD---AAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH-HHHHHH---SCCS---EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH-hhhhhc---ccce---EEeeccchhHHHHHHHHhccCceEE
Confidence 6788877 35799999999988875 67777777553 222221 1220 111111100 00 1123569999
Q ss_pred EeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 83 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
+-.- . . ..++..+++++|+|+++..
T Consensus 105 ~D~v-----G--g---~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 105 FDNV-----G--G---DISNTVISQMNENSHIILC 129 (187)
T ss_dssp EESS-----C--H---HHHHHHHTTEEEEEEEEEC
T ss_pred EecC-----C--c---hhHHHHhhhccccccEEEe
Confidence 8532 1 1 5678899999999998875
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.67 E-value=0.45 Score=32.54 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=62.1
Q ss_pred cccCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChH-HHHHHHHHHHhhCCCCCCcceeeccCCCCCC-------
Q 030558 5 EWIERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQ-EIEDNIAYNSTTNGITPALPHIKHSWGDAFP------- 73 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (175)
..++|+++|=-|+..|. .+..|+++ |.+|+.+|.+.. .+ +.........+. .+..+..+..+...
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~-~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESA-EEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHH-HHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHH
Confidence 45788999988887664 33455554 889999998753 44 444444444433 23444444433110
Q ss_pred --CCCCCccEEEeCCcccCcccc-----hH-----------HHHHHHHHHhhcCCCCceeec
Q 030558 74 --IPNPDWDLILASDILLYVKQY-----SN-----------LIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 --~~~~~fD~i~~~~~l~~~~~~-----~~-----------~~~~l~~l~~~l~pgG~~~~~ 117 (175)
...+..|+++.+......... ++ ...+.+.+.+.|+.+|..++.
T Consensus 90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 012467888776544322211 12 234466777788888876665
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=91.86 E-value=0.16 Score=34.77 Aligned_cols=108 Identities=10% Similarity=-0.084 Sum_probs=60.7
Q ss_pred CCCcEEEeCCCccHHHHHHHHhCC-----------------------------------------CcEEEEeCChHHHHH
Q 030558 8 ERRRCIELGSGTGALAIFLRKAMN-----------------------------------------LDITTSDYNDQEIED 46 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~~-----------------------------------------~~v~~~D~s~~~l~~ 46 (175)
.+..++|--||+|.+.++++.... ..++|.|+++.++ +
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai-~ 128 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA-Q 128 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH-H
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH-H
Confidence 455699999999999988665310 1356777777776 3
Q ss_pred HH---HHHHhhCCCCCCcceeeccCCCCCC----CCCCCccEEEeCCcccCcc------cchHHHHHHHHHHhhcCCCCc
Q 030558 47 NI---AYNSTTNGITPALPHIKHSWGDAFP----IPNPDWDLILASDILLYVK------QYSNLIKSLSVLLKSYKPKDS 113 (175)
Q Consensus 47 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~fD~i~~~~~l~~~~------~~~~~~~~l~~l~~~l~pgG~ 113 (175)
.+ +.|....+....+.....+..+..+ ......++|+++...-.=. ..+...+++..+.+.+.....
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 33 3466666664433333333222111 1234678999986631100 012345666677777754443
Q ss_pred eee
Q 030558 114 QVG 116 (175)
Q Consensus 114 ~~~ 116 (175)
+++
T Consensus 209 ~~i 211 (249)
T d1o9ga_ 209 IAV 211 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.31 Score=33.36 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=35.8
Q ss_pred CccccCCCcEEEeCCCccHHHHH----HHHhCCCcEEEEeCChHHHHHHHHHHHhh
Q 030558 3 HREWIERRRCIELGSGTGALAIF----LRKAMNLDITTSDYNDQEIEDNIAYNSTT 54 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~----l~~~~~~~v~~~D~s~~~l~~~~~~~~~~ 54 (175)
.|++++|+++|=-|++.|. +.. ++++ |.+|++++.+++.+++..+.....
T Consensus 8 ~~~~L~GK~alITGassGI-G~aiA~~la~~-G~~Vil~~r~~~~l~~~~~~~~~~ 61 (269)
T d1xu9a_ 8 RPEMLQGKKVIVTGASKGI-GREMAYHLAKM-GAHVVVTARSKETLQKVVSHCLEL 61 (269)
T ss_dssp CGGGGTTCEEEESSCSSHH-HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CccccCCCEEEEeCCCcHH-HHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHhhh
Confidence 3667899999999987763 444 4444 899999999998885544443333
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=90.59 E-value=1.6 Score=30.35 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=60.0
Q ss_pred CcEEEeCCCccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCC--CcceeeccCCCCC-------CCCCCCcc
Q 030558 10 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP--ALPHIKHSWGDAF-------PIPNPDWD 80 (175)
Q Consensus 10 ~~vLDlGcG~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~fD 80 (175)
..|+.||||-=.-+..+....+..++=+|. |.++ +.-++.+...+... ....+..+..+++ .+..+..-
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi-~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVL-AYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHH-HHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHH-HHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 457779999766555552222444555664 3454 44344444433322 2222333222211 12223445
Q ss_pred EEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 81 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 81 ~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++++-.+++|.. .+....+++.+.....||+.+++-
T Consensus 169 l~i~EGvl~YL~-~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 169 AWLAEGLLMYLP-ATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp EEEECSCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEEccccccCC-HHHHHHHHHHHHHhCCCCCEEEEE
Confidence 677777776655 577889999999999999988775
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.58 E-value=0.17 Score=30.69 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=21.8
Q ss_pred cEEEeCCCccHHHHHHHHh---CCCcEEEEeCChHHH
Q 030558 11 RCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEI 44 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~~~l 44 (175)
+|+=+|+ |.++..+++. .+.+|+.+|.+++.+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~ 36 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDIC 36 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhh
Confidence 3455555 5555555443 378899999999877
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.41 E-value=0.23 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=33.0
Q ss_pred cCCCcEEEeCC--CccHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 030558 7 IERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIA 49 (175)
Q Consensus 7 ~~~~~vLDlGc--G~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~ 49 (175)
.++.+||=.|+ |.|..++.+++..+.+|+++--|++.. +.++
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~-~~~~ 73 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH-EYLK 73 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH-HHHH
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHH-HHHH
Confidence 45777887765 468888999999999999999998775 5544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=90.28 E-value=0.26 Score=31.43 Aligned_cols=92 Identities=8% Similarity=0.004 Sum_probs=45.5
Q ss_pred EEEeCCCc--cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCccc
Q 030558 12 CIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 89 (175)
Q Consensus 12 vLDlGcG~--G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (175)
|-=||+|. +.++..|++. +.+|+++|.+++.++ .+..+...... .......+.....-...|.++.. +
T Consensus 5 Ig~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~~~~~-~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ii~~--~- 74 (176)
T d2pgda2 5 IALIGLAVMGQNLILNMNDH-GFVVCAFNRTVSKVD-DFLANEAKGTK-----VLGAHSLEEMVSKLKKPRRIILL--V- 74 (176)
T ss_dssp EEEECCSHHHHHHHHHHHHT-TCCEEEECSSTHHHH-HHHHTTTTTSS-----CEECSSHHHHHHHBCSSCEEEEC--S-
T ss_pred EEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCHHHHH-HHHHhcccccc-----ccchhhhhhhhhhhcccceEEEe--c-
Confidence 33466664 2333445444 889999999998763 33222111110 00000000000011234565553 1
Q ss_pred CcccchHHHHHHHHHHhhcCCCCcee
Q 030558 90 YVKQYSNLIKSLSVLLKSYKPKDSQV 115 (175)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~l~pgG~~~ 115 (175)
...+....+++.+...+++|-.++
T Consensus 75 --~~~~~v~~v~~~l~~~~~~g~iii 98 (176)
T d2pgda2 75 --KAGQAVDNFIEKLVPLLDIGDIII 98 (176)
T ss_dssp --CTTHHHHHHHHHHHHHCCTTCEEE
T ss_pred --CchHHHHHHHHHHHhccccCcEEE
Confidence 334455677888888888875443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.21 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=28.0
Q ss_pred cCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChH
Q 030558 7 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQ 42 (175)
Q Consensus 7 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~ 42 (175)
.+|++|+=+|-| +|.-+..++...+.+|+++|.++.
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 578999999998 576555555556999999999664
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=90.09 E-value=1.5 Score=28.09 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=55.8
Q ss_pred CcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHH---HH----hhCCCCC-----CcceeeccCCCCCCCC
Q 030558 10 RRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAY---NS----TTNGITP-----ALPHIKHSWGDAFPIP 75 (175)
Q Consensus 10 ~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~---~~----~~~~~~~-----~~~~~~~~~~~~~~~~ 75 (175)
++|-=||+|+ |.- +..++.. |.+|+.+|.+++.+++..++ .. ....... ....+. ...... .
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~~~~-~ 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK-GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR--PTLSYG-D 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE--EESSST-T
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee--cccccc-c
Confidence 4577789886 332 2344444 89999999999887433221 11 1111100 000011 111111 1
Q ss_pred CCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 76 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
-..-|+|+-+ +. ++.+.-.++++++-+.++|+..+.-.+
T Consensus 81 ~~~adlViEa-v~---E~l~~K~~lf~~l~~~~~~~~IiaSnT 119 (186)
T d1wdka3 81 FGNVDLVVEA-VV---ENPKVKQAVLAEVENHVREDAILASNT 119 (186)
T ss_dssp GGGCSEEEEC-CC---SCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred ccccceeeee-ec---chHHHHHHHHHHHHhhcCCCeeEEecc
Confidence 2346888864 22 556666799999999999987555553
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.9 Score=28.62 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=42.8
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..+|++||=+||| ++.-..+.....+.+++.+.-+.+.. +.+.+....... +.. ..+. ......+|+|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka-~~l~~~~~~~~~---~~~--~~~~---~~~~~~~dliIN 85 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRA-EELAKLFAHTGS---IQA--LSMD---ELEGHEFDLIIN 85 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHH-HHHHHHTGGGSS---EEE--CCSG---GGTTCCCSEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHH-HHHHHHHhhccc---ccc--cccc---cccccccceeec
Confidence 3568999999997 45544444444577899999888665 333333322111 111 1221 122346899998
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+-.+
T Consensus 86 ~Tp~ 89 (170)
T d1nyta1 86 ATSS 89 (170)
T ss_dssp CCSC
T ss_pred cccc
Confidence 7655
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.39 E-value=0.16 Score=30.83 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=21.0
Q ss_pred EEEeCCCccHHHHHHHHh---CCCcEEEEeCChHHH
Q 030558 12 CIELGSGTGALAIFLRKA---MNLDITTSDYNDQEI 44 (175)
Q Consensus 12 vLDlGcG~G~~~~~l~~~---~~~~v~~~D~s~~~l 44 (175)
++=+|+ |.++..+++. .+.+|+.+|.+++.+
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~ 36 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKV 36 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHH
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHH
Confidence 444455 5555554443 388999999999876
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.34 E-value=0.37 Score=33.81 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=31.8
Q ss_pred CCcEEEeCCCccHHHHHHHHhCCC--c-EEEEeCChHHHHHHHHHH
Q 030558 9 RRRCIELGSGTGALAIFLRKAMNL--D-ITTSDYNDQEIEDNIAYN 51 (175)
Q Consensus 9 ~~~vLDlGcG~G~~~~~l~~~~~~--~-v~~~D~s~~~l~~~~~~~ 51 (175)
..+|+||-||.|.++.-+... |. + |.++|+++..+ +..+.|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~-~~~~~n 45 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVAN-EVYKYN 45 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHH-HHHHHH
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHH-HHHHHH
Confidence 457999999999999888655 43 3 78999999886 555555
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.25 E-value=0.35 Score=30.59 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=55.8
Q ss_pred CccccCCCcEEEeCCCc-cHHHHHHHHhC-CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC------CC
Q 030558 3 HREWIERRRCIELGSGT-GALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PI 74 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~-~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (175)
.....+|.+|+=+|+|. |..+..+++.. +..|+++|.+++-+ +.+++. +.. ..+.....+.. ..
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~~----GAd---~~in~~~~~~~~~~~~~~~ 94 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVF----GAT---DFVNPNDHSEPISQVLSKM 94 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT----TCC---EEECGGGCSSCHHHHHHHH
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH-HHHHHc----CCc---EEEcCCCcchhHHHHHHhh
Confidence 34567889999999987 55555554544 55799999999876 444422 220 11111111111 01
Q ss_pred CCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 75 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 75 ~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
....+|+|+-.-.- . .++......++++|..++.
T Consensus 95 ~~~G~d~vid~~G~------~---~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 95 TNGGVDFSLECVGN------V---GVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp HTSCBSEEEECSCC------H---HHHHHHHHTBCTTTCEEEE
T ss_pred ccCCcceeeeecCC------H---HHHHHHHHHhhCCCcceeE
Confidence 13468988765331 2 5566777777777554443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.23 E-value=0.79 Score=31.08 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=47.1
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---------
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 74 (175)
++|+++|=-|++.|. .+..|++. |.+|+.+|.+++.+++..+ .........++..+..|+.+....
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~-~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKA-AVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH-HHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-HHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 578888888887653 33455555 8899999999988743333 333322222344445555432110
Q ss_pred CCCCccEEEeCCcc
Q 030558 75 PNPDWDLILASDIL 88 (175)
Q Consensus 75 ~~~~fD~i~~~~~l 88 (175)
.-+..|+++.+.-+
T Consensus 80 ~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGI 93 (258)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HhCCCCEEEECCcc
Confidence 12468888876543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.95 Score=30.44 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=49.7
Q ss_pred ccccCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-------
Q 030558 4 REWIERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP------- 73 (175)
Q Consensus 4 ~~~~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (175)
+..+.|+.+|=-|++.|. ++..+++. |.+|+.+|.+++.+ +.....+...+. ++..+..|..+...
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l-~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGL-EETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHH
Confidence 345788888888887654 23445454 89999999999887 444444444333 34445555543211
Q ss_pred --CCCCCccEEEeCCccc
Q 030558 74 --IPNPDWDLILASDILL 89 (175)
Q Consensus 74 --~~~~~fD~i~~~~~l~ 89 (175)
...+..|+++.+..+.
T Consensus 78 i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHTCCCSEEEECCCCC
T ss_pred HHHHcCCCceeEeecccc
Confidence 1234678888765554
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.90 E-value=0.66 Score=31.71 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=46.1
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-CCCcceeeccCCCCCC---------
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPHIKHSWGDAFP--------- 73 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------- 73 (175)
++|+++|=-|++.|. .+..|++. |.+|+.+|.+++.+ +...+.+...+. ..++..+..|..+...
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERL-EETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 678888888876542 22445444 88999999999887 444444444332 1233444555543110
Q ss_pred CCCCCccEEEeCCc
Q 030558 74 IPNPDWDLILASDI 87 (175)
Q Consensus 74 ~~~~~fD~i~~~~~ 87 (175)
..-+..|+++.+..
T Consensus 81 ~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHhCCceEEEeCCc
Confidence 01246788887643
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.80 E-value=0.46 Score=30.83 Aligned_cols=104 Identities=10% Similarity=0.018 Sum_probs=57.0
Q ss_pred CcEEEeCCCc-cHH-HHHHHHhCCCcEEEEeCChHHHHHHHHHHHh-------hCCCCCCc-------ce--eeccCCCC
Q 030558 10 RRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNST-------TNGITPAL-------PH--IKHSWGDA 71 (175)
Q Consensus 10 ~~vLDlGcG~-G~~-~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~-------~~~~~~~~-------~~--~~~~~~~~ 71 (175)
++|-=||+|+ |.- +..++.. |.+|+.+|.+++.++ .+..... ..+..... .. ..+....+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~~~l~-~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTEDILA-KSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHH-HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred EEEEEECcCHHHHHHHHHHHhC-CCcEEEEECChHHHH-HHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 4677789986 333 3444444 899999999998764 2222211 11110000 00 00011111
Q ss_pred CCCCCCCccEEEeCCcccCcccchHHHHHHHHHHhhcCCCCceeeccc
Q 030558 72 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 119 (175)
Q Consensus 72 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~~ 119 (175)
+...-...|+|+-+-. ++.+.-.++++++.+.++++..+.-.+.
T Consensus 83 ~~~a~~~ad~ViEav~----E~l~~K~~v~~~l~~~~~~~~ilasnTS 126 (192)
T d1f0ya2 83 AASVVHSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFASNTS 126 (192)
T ss_dssp HHHHTTSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEEECCS
T ss_pred hHhhhcccceehhhcc----cchhHHHHHHHHHhhhcccCceeeccCc
Confidence 1111234678877532 5556667999999999999975555533
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.78 E-value=0.7 Score=31.63 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-CCCcceeeccCCCCCCC--------
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPHIKHSWGDAFPI-------- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------- 74 (175)
++|+++|=-|++.|. .+..|++. |.+|+.+|.+++.+ +.....+...+. ..++..+..|..+....
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l-~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRL-EETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 578888888877653 23445444 88999999999887 444444444332 22334445555432110
Q ss_pred -CCCCccEEEeCCc
Q 030558 75 -PNPDWDLILASDI 87 (175)
Q Consensus 75 -~~~~fD~i~~~~~ 87 (175)
.-+..|+++.+..
T Consensus 80 ~~~G~iDilVnnAG 93 (274)
T d1xhla_ 80 AKFGKIDILVNNAG 93 (274)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCceEEEeecc
Confidence 1246788887643
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=88.19 E-value=1.2 Score=30.19 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=46.1
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------C
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 74 (175)
++|+++|=-|++.|. .+..|++. |.+|+.+|.+++.+ +.....+...+. ++..+..|+.+... .
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREAL-EKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999988876553 33445554 88999999999887 444444444333 33444555543210 0
Q ss_pred CCCCccEEEeCCc
Q 030558 75 PNPDWDLILASDI 87 (175)
Q Consensus 75 ~~~~fD~i~~~~~ 87 (175)
.-+..|+++.+..
T Consensus 79 ~~g~iDilVnnaG 91 (260)
T d1zema1 79 DFGKIDFLFNNAG 91 (260)
T ss_dssp HHSCCCEEEECCC
T ss_pred HhCCCCeehhhhc
Confidence 1246888876543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=87.85 E-value=1.3 Score=29.88 Aligned_cols=78 Identities=9% Similarity=0.132 Sum_probs=46.6
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----------C
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----------P 73 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 73 (175)
++||++|=.|+..|. .+..+++. |.+|+.+|.+++.+++.. +.....+. ....+..|..+.. .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~-~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECL-EIWREKGL--NVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH-HHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH-HHHHhcCC--CceEEEeecCCHHHHHHHHHHHHH
Confidence 578999999986542 23345444 889999999998874444 34444333 3334444543311 1
Q ss_pred CCCCCccEEEeCCcc
Q 030558 74 IPNPDWDLILASDIL 88 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l 88 (175)
...+..|+++.+.-+
T Consensus 80 ~~~g~idilinnag~ 94 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGV 94 (258)
T ss_dssp HTTSCCCEEEECCCC
T ss_pred HhCCCcEEEeccccc
Confidence 123567888765444
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=87.62 E-value=0.15 Score=32.20 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=21.9
Q ss_pred EEEeCCCc-c-HHHHHHHHhCCCcEEEEeCChHHH
Q 030558 12 CIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 12 vLDlGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~l 44 (175)
|-=||+|. | .++..|++. +.+|++.|.++..+
T Consensus 3 IgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~~~~~ 36 (161)
T d1vpda2 3 VGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNPEAI 36 (161)
T ss_dssp EEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred EEEEehhHHHHHHHHHHHHC-CCeEEEEeCCcchh
Confidence 34467775 3 333456554 88999999999776
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=87.43 E-value=2.6 Score=29.30 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=33.6
Q ss_pred CCCccccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHH
Q 030558 1 MHHREWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIA 49 (175)
Q Consensus 1 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~ 49 (175)
|+++-+.+|++||=.|+ +|..+..+++.+ |.+|+++.-+.... ...+
T Consensus 3 ~~~~~~~~gk~VlVTG~-sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~-~~~~ 52 (342)
T d1y1pa1 3 IDNAVLPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKL-ANLQ 52 (342)
T ss_dssp STTCSSCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHH
T ss_pred CCCCCCCCcCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEeCCchhH-HHHH
Confidence 56777888999998875 477776555533 88999988777654 4443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=86.27 E-value=0.21 Score=31.18 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=51.4
Q ss_pred cEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEeCCcc
Q 030558 11 RCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 88 (175)
Q Consensus 11 ~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (175)
||+=+|+|. |... ..|++. |.+|+.++.++... ... ..... .............+.....+|+|+..---
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~~~-~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQPY-CSV----NLVET--DGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCSE-EEE----EEECT--TSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCceEEEEcCHHHh-hhh----ccccC--CccccccccccchhhhhcccceEEEeecc
Confidence 677789986 5444 445444 88999999987542 110 00011 00001000001111122468998875222
Q ss_pred cCcccchHHHHHHHHHHhhcCCCCceeecc
Q 030558 89 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 118 (175)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~l~pgG~~~~~~ 118 (175)
. +...+++.+...++++..++...
T Consensus 74 ---~---~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 74 ---W---QVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp ---G---GHHHHHHHHHTTSCTTSCEEEEC
T ss_pred ---c---chHHHHHhhccccCcccEEeecc
Confidence 2 34488999999999887666653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=86.20 E-value=1.3 Score=27.83 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=39.7
Q ss_pred ccCCCcEEEeCCC-ccHHHHHHHHhCC-CcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEE
Q 030558 6 WIERRRCIELGSG-TGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 83 (175)
Q Consensus 6 ~~~~~~vLDlGcG-~G~~~~~l~~~~~-~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 83 (175)
..++++||=|||| +|.-..+.....+ .+++.+.-+++.. +.+..... . .. .. ......+|+|+
T Consensus 14 ~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka-~~L~~~~~---~----~~--~~-----~~~~~~~DliI 78 (167)
T d1npya1 14 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTG-QYLAALYG---Y----AY--IN-----SLENQQADILV 78 (167)
T ss_dssp CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHH-HHHHHHHT---C----EE--ES-----CCTTCCCSEEE
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHH-HHHHHhhh---h----hh--hh-----cccccchhhhe
Confidence 3467899999997 4555444334335 5799999988664 44333221 1 11 11 11234689999
Q ss_pred eCCcc
Q 030558 84 ASDIL 88 (175)
Q Consensus 84 ~~~~l 88 (175)
.+-.+
T Consensus 79 NaTpi 83 (167)
T d1npya1 79 NVTSI 83 (167)
T ss_dssp ECSST
T ss_pred ecccc
Confidence 86554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=86.20 E-value=1.8 Score=29.64 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=45.3
Q ss_pred ccCCCcEEEeCCCccHHHH----HHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---------
Q 030558 6 WIERRRCIELGSGTGALAI----FLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--------- 72 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~----~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (175)
.++|+++|=-|+..| ++. .|++. |.+|+.+|.+...+.+..++.....+. ....+..+..+..
T Consensus 22 ~l~gK~alITGas~G-IG~aiA~~la~~-Ga~Vii~~r~~~~l~~~~~~l~~~~g~--~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTG-LGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTGN--KVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp TTTTCEEEEETTTSH-HHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSS--CEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhcCC--ceEEEEecccChHHHHHHhhhh
Confidence 567899999998655 344 44444 899999999998764444333333222 2233334443211
Q ss_pred CCCCCCccEEEeCCcc
Q 030558 73 PIPNPDWDLILASDIL 88 (175)
Q Consensus 73 ~~~~~~fD~i~~~~~l 88 (175)
....+..|+++.+...
T Consensus 98 ~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 98 IKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHTCSCSEEEECCCC
T ss_pred hhhccccchhhhhhhh
Confidence 0113467877765443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.15 E-value=1.9 Score=28.95 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=46.7
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------C
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 74 (175)
++|+++|=-|++.|. .+..|++. |++|+.+|.+++.+.+..++.....+. ++..+..+..+... .
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 578899988987653 23445454 889999999998774444433333232 23344455543111 0
Q ss_pred CCCCccEEEeCCcc
Q 030558 75 PNPDWDLILASDIL 88 (175)
Q Consensus 75 ~~~~fD~i~~~~~l 88 (175)
.-+..|+++.+..+
T Consensus 80 ~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGI 93 (251)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 12468988876554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.37 E-value=2 Score=28.97 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=46.8
Q ss_pred ccCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------
Q 030558 6 WIERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 73 (175)
.++|+++|=-|++.|. .+..|++. |.+|+.+|.+++.+++..+ .....+. ++..+..+..+...
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~-~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLS-KWQKKGF--QVTGSVCDASLRPEREKLMQTVS 80 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH-HHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-HHHhcCC--ceEEEeccCCCHHHHHHHHHHHH
Confidence 3578999988887654 33445554 8899999999988744433 3333332 33444444432110
Q ss_pred -CCCCCccEEEeCCcc
Q 030558 74 -IPNPDWDLILASDIL 88 (175)
Q Consensus 74 -~~~~~fD~i~~~~~l 88 (175)
...+..|+++.+...
T Consensus 81 ~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 81 SMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHTTCCSEEEEECCC
T ss_pred HHhCCCcccccccccc
Confidence 013568888876544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.24 E-value=1.1 Score=27.82 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=26.2
Q ss_pred CCcEEEeCCCc-cHHHHH-HHHhCCCcEEEEeCChHHH
Q 030558 9 RRRCIELGSGT-GALAIF-LRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 9 ~~~vLDlGcG~-G~~~~~-l~~~~~~~v~~~D~s~~~l 44 (175)
+++||=||+|- |..... |++. +.+|+.+|.+....
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~~~a 38 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTLESA 38 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT-TCEEEEEESCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECChHHH
Confidence 57888899974 666544 4444 78999999999765
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.21 E-value=1.4 Score=29.73 Aligned_cols=78 Identities=9% Similarity=0.136 Sum_probs=44.7
Q ss_pred cCCCcEEEeCCCccHHHHH----HHHhCCCcEEEEeCChHHHHHHHHHHHhhCCC-CCCcceeeccCCCCCC--------
Q 030558 7 IERRRCIELGSGTGALAIF----LRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPHIKHSWGDAFP-------- 73 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~----l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 73 (175)
++||.+|=-|++.| ++.. |++. |.+|+.+|.+++.+ +.....+...+. ...+..+..|..+...
T Consensus 3 l~gKvalVTGas~G-IG~aia~~la~~-Ga~V~~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 3 FAEKVAIITGSSNG-IGRATAVLFARE-GAKVTITGRHAERL-EETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTCEEEETTTTSH-HHHHHHHHHHHT-TCEEEEEESCHHHH-HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCH-HHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence 57888887787654 3443 4444 88999999999887 444444444332 1233444445433110
Q ss_pred -CCCCCccEEEeCCc
Q 030558 74 -IPNPDWDLILASDI 87 (175)
Q Consensus 74 -~~~~~fD~i~~~~~ 87 (175)
..-+..|+++.+..
T Consensus 80 ~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 80 LGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCEeecccc
Confidence 01246788777643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.91 E-value=2.5 Score=28.24 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=47.4
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 73 (175)
.+++|.+|=-|++.| ++..+++.+ |.+|+.+|.+++.+ +.....+...+. +...+..|..+...
T Consensus 7 ~lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l-~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 7 CGENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSC-DSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHH-HHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence 457888888887654 565555543 78999999999887 444444444332 34445555543110
Q ss_pred CCCCCccEEEeCCcc
Q 030558 74 IPNPDWDLILASDIL 88 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l 88 (175)
..-+..|+++.+...
T Consensus 83 ~~~g~iDilvnnag~ 97 (251)
T d2c07a1 83 TEHKNVDILVNNAGI 97 (251)
T ss_dssp HHCSCCCEEEECCCC
T ss_pred HhcCCceeeeecccc
Confidence 112578888776544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.82 E-value=1.4 Score=29.50 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=45.1
Q ss_pred ccCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC-----CCCC
Q 030558 6 WIERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNP 77 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 77 (175)
.++|+++|=-|++.|. .+..|++. |.+|+.+|.+++.++ .+.+... + ...+..+..+... ..-+
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~-~~~~~~~--~----~~~~~~Dv~d~~~v~~~~~~~g 75 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLD-SLVRECP--G----IEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHH-HHHHHST--T----CEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHH-HHHHhcC--C----CeEEEEeCCCHHHHHHHHHHhC
Confidence 4689999999987652 23444444 889999999998773 3332221 1 2344445433110 1125
Q ss_pred CccEEEeCCccc
Q 030558 78 DWDLILASDILL 89 (175)
Q Consensus 78 ~fD~i~~~~~l~ 89 (175)
..|+++.+....
T Consensus 76 ~iDilVnnAg~~ 87 (244)
T d1pr9a_ 76 PVDLLVNNAAVA 87 (244)
T ss_dssp CCCEEEECCCCC
T ss_pred CceEEEeccccc
Confidence 789888765543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.70 E-value=0.35 Score=32.83 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=31.8
Q ss_pred CCCCCccEEEeCCcccC----c----ccchHHHHHHHHHHhhcCCCCceeec
Q 030558 74 IPNPDWDLILASDILLY----V----KQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l~~----~----~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
++++++|+|+....... + .-.+.+...+.++.|+|+|+|.+++.
T Consensus 19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 45789999998766321 0 00234678899999999999988885
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.19 E-value=1.8 Score=29.08 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------CC
Q 030558 8 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------IP 75 (175)
Q Consensus 8 ~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 75 (175)
.||++|=-|++.| ++..+++.+ |.+|+.+|.+++.+++. ...........++..+..|..+... ..
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~-~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQC-KAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 5788888887654 354444433 88999999999877433 3333322221233344445443111 01
Q ss_pred CCCccEEEeCCcccCccc
Q 030558 76 NPDWDLILASDILLYVKQ 93 (175)
Q Consensus 76 ~~~fD~i~~~~~l~~~~~ 93 (175)
-+..|+++.+.......+
T Consensus 80 ~G~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKN 97 (254)
T ss_dssp HSCCCEEEECCCCCCSSS
T ss_pred cCCcCeeccccccccccc
Confidence 247899888776644433
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.76 E-value=1.2 Score=28.78 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=24.0
Q ss_pred cEEEeCCCc-cHHH-HHHHHhCCCcEEEEeCChHHH
Q 030558 11 RCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEI 44 (175)
Q Consensus 11 ~vLDlGcG~-G~~~-~~l~~~~~~~v~~~D~s~~~l 44 (175)
+|.=+|+|. |... ..+|+. |.+|+++|++++.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~-g~~V~g~D~n~~~i 36 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSSTKI 36 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEEeCCHHHH
Confidence 456678885 5544 445554 88999999999876
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.69 E-value=1.6 Score=29.52 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=44.9
Q ss_pred ccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCC---------
Q 030558 6 WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--------- 73 (175)
Q Consensus 6 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 73 (175)
-++|+++|=-|++.|. +..+++.+ |.+|+.+|.+++.+++. ...+... ..+..+..|+.+...
T Consensus 3 rL~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~-~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (268)
T d2bgka1 3 RLQDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKV-CNNIGSP---DVISFVHCDVTKDEDVRNLVDTTI 77 (268)
T ss_dssp TTTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHHCCT---TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHhcCC---CceEEEEccCCCHHHHHHHHHHHH
Confidence 3688999999977653 54444333 88999999999877433 3333221 223344455543210
Q ss_pred CCCCCccEEEeCCc
Q 030558 74 IPNPDWDLILASDI 87 (175)
Q Consensus 74 ~~~~~fD~i~~~~~ 87 (175)
..-+..|+++.+..
T Consensus 78 ~~~g~iD~lVnnAG 91 (268)
T d2bgka1 78 AKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCcceeccccc
Confidence 01246788886544
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=2.8 Score=28.89 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=31.5
Q ss_pred CccccCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHH
Q 030558 3 HREWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDN 47 (175)
Q Consensus 3 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~ 47 (175)
.|..++|+++|=-|++.| ++..+++.+ |.+|+.+|.+++.+++.
T Consensus 6 ~~g~L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~ 52 (297)
T d1yxma1 6 APGLLQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSA 52 (297)
T ss_dssp CTTTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 356789999998887654 344433332 88999999999877433
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=82.03 E-value=3.1 Score=27.95 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=45.6
Q ss_pred cCCCcEEEeCCCccH---HHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC----------C
Q 030558 7 IERRRCIELGSGTGA---LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF----------P 73 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~---~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 73 (175)
++|+++|=-|++.|. .+..|++. |++|+.+|.+++.+++. ...+...+. ....+..|..+.. .
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~-~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDC-LTQWRSKGF--KVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHH-HHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH-HHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHH
Confidence 578999988876543 22344444 88999999999887444 334444332 2333444443311 0
Q ss_pred CCCCCccEEEeCCcc
Q 030558 74 IPNPDWDLILASDIL 88 (175)
Q Consensus 74 ~~~~~fD~i~~~~~l 88 (175)
...+..|+++.+.-+
T Consensus 82 ~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGI 96 (259)
T ss_dssp HTTTCCCEEEECCCC
T ss_pred HhCCCceEEEECCce
Confidence 112368988876554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.25 E-value=4 Score=24.72 Aligned_cols=94 Identities=14% Similarity=-0.025 Sum_probs=46.0
Q ss_pred cEEEeCCCccHHHHHHHH---hCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCC---CCCCCCccEEEe
Q 030558 11 RCIELGSGTGALAIFLRK---AMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLILA 84 (175)
Q Consensus 11 ~vLDlGcG~G~~~~~l~~---~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~~ 84 (175)
+|+=+|+| ..+..+++ ..+.+|+.+|.+++...+..... ...+. ..+..+..+.. ...-+..|.+++
T Consensus 5 HiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~-~~~~~----~vi~Gd~~d~~~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 5 HFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR-LGDNA----DVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH-HCTTC----EEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh-hcCCc----EEEEccCcchHHHHHhccccCCEEEE
Confidence 45556665 45544444 33888999999986542333322 22222 33333322211 112235677776
Q ss_pred CCcccCcccchHHHHHHHHHHhhcCCCCceeec
Q 030558 85 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 117 (175)
Q Consensus 85 ~~~l~~~~~~~~~~~~l~~l~~~l~pgG~~~~~ 117 (175)
..- .+ .....+....+.+.|...++..
T Consensus 78 ~~~----~d--~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 78 LSD----ND--ADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp CSS----CH--HHHHHHHHHHHHHTSSSCEEEE
T ss_pred ccc----cH--HHHHHHHHHHHHhCCCCceEEE
Confidence 421 11 2223444455666777665554
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.99 E-value=3.8 Score=27.42 Aligned_cols=78 Identities=10% Similarity=0.102 Sum_probs=45.0
Q ss_pred cCCCcEEEeCCCccHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCC---------
Q 030558 7 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 74 (175)
Q Consensus 7 ~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 74 (175)
++|+++|=-|++. .++..+++.+ |++|+.+|.+++.+ +.....+...+. +...+..|..+....
T Consensus 9 L~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~-~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 9 LDGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAA-NHVVDEIQQLGG--QAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHH-HHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 4788888777654 4454444433 88999999999887 444444444332 334445555431110
Q ss_pred CCCCccEEEeCCcc
Q 030558 75 PNPDWDLILASDIL 88 (175)
Q Consensus 75 ~~~~fD~i~~~~~l 88 (175)
.-+..|+++.+..+
T Consensus 85 ~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 85 KLGKVDILVNNAGG 98 (255)
T ss_dssp HHSSCCEEEECCCC
T ss_pred HcCCCCEeeeCCcC
Confidence 12467887776544
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=80.88 E-value=2.5 Score=26.53 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=43.9
Q ss_pred ccCCCcEEEeCCCc-cHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCCCCCCCCCccEEEe
Q 030558 6 WIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 84 (175)
Q Consensus 6 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (175)
..++++||=+|||- +....+.....+.+|+.+.-+.+-. +...+....... .....+. ......+|+|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a-~~l~~~~~~~~~-----~~~~~~~---~~~~~~~diiIN 85 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKT-KELAERFQPYGN-----IQAVSMD---SIPLQTYDLVIN 85 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHH-HHHHHHHGGGSC-----EEEEEGG---GCCCSCCSEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHH-HHHHHHHhhccc-----cchhhhc---cccccccceeee
Confidence 35788999999974 4444443344578899999998776 343333332111 1112221 112457899998
Q ss_pred CCcc
Q 030558 85 SDIL 88 (175)
Q Consensus 85 ~~~l 88 (175)
+-.+
T Consensus 86 ~tp~ 89 (171)
T d1p77a1 86 ATSA 89 (171)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7665
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.45 E-value=1.1 Score=28.75 Aligned_cols=79 Identities=6% Similarity=0.043 Sum_probs=43.5
Q ss_pred cccCCCcEEEeCCCc--cHHH-HHHHHhCCCcEEEEeCChHHHHHHHHHHHhhCCCCCCcceeeccCCCC--CCCCCCCc
Q 030558 5 EWIERRRCIELGSGT--GALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDW 79 (175)
Q Consensus 5 ~~~~~~~vLDlGcG~--G~~~-~~l~~~~~~~v~~~D~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f 79 (175)
..++|+++|=.|++. |.-. ..+++. |.+|+.++.+++.++ ........... ......+..+. ..-.-+..
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~-~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~i 93 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQ-AAADSVNKRFK---VNVTAAETADDASRAEAVKGA 93 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHHHHHHHT---CCCEEEECCSHHHHHHHTTTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHHH-HHHHHHHhccc---hhhhhhhcccHHHHHHHhcCc
Confidence 356899999998654 3333 345444 889999999998763 33333322111 12222333221 11112457
Q ss_pred cEEEeCCcc
Q 030558 80 DLILASDIL 88 (175)
Q Consensus 80 D~i~~~~~l 88 (175)
|+++.+...
T Consensus 94 Dilin~Ag~ 102 (191)
T d1luaa1 94 HFVFTAGAI 102 (191)
T ss_dssp SEEEECCCT
T ss_pred CeeeecCcc
Confidence 998876553
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