Citrus Sinensis ID: 030591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MAAAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSNDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSYF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccHHHHccccHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEcccccHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEccHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
maaapssstkkhpsyrgircrnskwvseireprkstriwlgtyptpemAAAAYDVAALALkgsdavlnfpnfvstypvpassssvDIRNAAAAAAASCARrkaesvsdpdenqrmeqsrsndvigefvdedallnmpNLLVDMaegmmvspprlnsspsddspensdgerlwsyf
Flexible Loop (DISEMBL)
maaapssstkkhpsyrgircrnskwvseireprkstriwlgtypTPEMAAAAYDVAALALKGSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARrkaesvsdpdenqrmeqsrsndVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRlnsspsddspensdgerlwsyf
Low Complexity Region (SEG)
MAAAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMaaaaydvaalaLKGSDAVLNFPNFVSTYPVPASSSSVDIRNaaaaaaaSCARRKAESVSDPDENQRMEQSRSNDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLnsspsddspensdGERLWSYF
Disordered region (IsUnstruct)
*****************IRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVSTY***********************************************IGEFVDEDALLNMPNLLVD*********************************
Disordered Region (DISOPRED)
****************GIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVS*****************************************************VDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSYF
Disordered Region (DISEMBL)
****************GIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVSTYPVPASSSSVDI********************************SNDVIGEFVDEDALLNMPNLLVDMAEGMMVSP************************
Disordered Region (DISPRO)
*********KKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASC*************************IGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNS**********DGERLWSYF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSNDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q9FJ90	232	Ethylene-responsive trans	yes	no	0.937	0.706	0.584	6e-44
Q9CAN9	248	Ethylene-responsive trans	no	no	0.885	0.625	0.591	3e-43
Q38Q39	192	Ethylene-responsive trans	no	no	0.994	0.906	0.585	4e-37
Q9SJR0	184	Ethylene-responsive trans	no	no	0.874	0.831	0.531	3e-33
Q8S9Z5	219	Dehydration-responsive el	no	no	0.84	0.671	0.480	2e-30
A2WZI4	219	Dehydration-responsive el	N/A	no	0.84	0.671	0.480	2e-30
Q9SYS6	216	Dehydration-responsive el	no	no	0.914	0.740	0.425	4e-28
Q9FJ93	224	Dehydration-responsive el	no	no	0.845	0.660	0.411	8e-28
P93835	213	Dehydration-responsive el	no	no	0.925	0.760	0.436	1e-27
Q9LYD3	236	Dehydration-responsive el	no	no	0.485	0.360	0.651	1e-26

>sp|Q9FJ90|ERF25_ARATH Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1

 Score =  176 bits (447), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 119/171 (69%), Gaps = 7/171 (4%)

Query: 11  KHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFP 70
           KH  +RGIR RN KWVSEIREPRK+TRIWLGTYP PEMAAAAYDVAALALKG DAVLNFP
Sbjct: 61  KHSIFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFP 120

Query: 71  NFVSTYPVPASSSSVDIRNAAAAAAA-----SCARRKAESVSDPDENQRMEQSRSNDVIG 125
               TY  P S+S+ DIR AA+ AA           K      P + + +E+   N    
Sbjct: 121 GLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQPGKEEELEEVSCNSCSL 180

Query: 126 EFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPS--DDSPENSDGERLWSY 174
           EF+DE+A+LNMP LL +MAEGM++SPPR+   P+  DDSPEN +G+ LWSY
Sbjct: 181 EFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGDNLWSY 231

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN9|ERF26_ARATH Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 122/174 (70%), Gaps = 19/174 (10%)

Query: 10  KKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNF 69
           KK+P YRGIRCR+ KWVSEIREP+K+TR+WLGTYPTPEMAAAAYDVAALALKG D +LNF
Sbjct: 85  KKNPVYRGIRCRSGKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNF 144

Query: 70  PNFVSTYPVPASSS---------SVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRS 120
           P+ + +YP+P SSS         +      AA AA    ++K + V D  E+  M     
Sbjct: 145 PDSLGSYPIPLSSSAAHIRCAAAAAAATRGAAGAAVKVGQKKEDKVYDTAESSTM----- 199

Query: 121 NDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSY 174
                 FVDE+ LLNMP LL DMA+GMMV+PP + S PSDDSPENSDGE LWSY
Sbjct: 200 -----GFVDEEELLNMPGLLADMAKGMMVAPPWMGSPPSDDSPENSDGESLWSY 248

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38Q39|ERF27_ARATH Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1

 Score =  154 bits (388), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 128/188 (68%), Gaps = 14/188 (7%)

Query: 1   MAAAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALAL 60
           MA+A   S +K P YRGIRCR+ KWVSEIREPRK+TRIWLGTYP  EMAAAAYDVAA+AL
Sbjct: 5   MASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMAL 64

Query: 61  KGSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRS 120
           KG +AVLNFP  V +YPVP S+S+ DIR AAAAAAA     + E      E +       
Sbjct: 65  KGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKSR 124

Query: 121 -------NDVIG------EFVDEDALLNMPNLLVDMAEGMMVSPPR-LNSSPSDDSPENS 166
                  NDV        EF+DE+ +LNMPNLL +MAEGMMV+PP  + S PSDDSPENS
Sbjct: 125 ARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPENS 184

Query: 167 DGERLWSY 174
           + E LW Y
Sbjct: 185 NDEDLWGY 192

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJR0|ERF24_ARATH Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 107/160 (66%), Gaps = 7/160 (4%)

Query: 1   MAAAPSSSTKKHPSYRGIRCR--NSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAAL 58
           M      +  +HP YRG+R R  ++KWVSEIREPRK  RIWLGT+ TPEMAA AYDVAAL
Sbjct: 1   MQGTSKDNGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAAL 60

Query: 59  ALKGSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQR---- 114
           ALKGS A LNFPN VS+ P P S S  DI+ AAA+AAA+    +   V   + +Q     
Sbjct: 61  ALKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVA 120

Query: 115 -MEQSRSNDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPR 153
            M  S  N  +  F+DED + +MPN+L++MAEGM++SPPR
Sbjct: 121 CMNSSYDNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPR 160

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9Z5|DRE1F_ORYSJ Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 7/154 (4%)

Query: 11  KHPSYRGIRCR--NSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGS-DAVL 67
           +HP YRG+R R   S+WV E+REP+   RIWLGTYPTPEMAA A+DVAA+AL+G   A L
Sbjct: 43  RHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAEL 102

Query: 68  NFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSNDVIGE- 126
           NFP+  ST P   ++S  DIR AAA AA    R         D  +      +    G  
Sbjct: 103 NFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEGTSGGGATATSGRP 162

Query: 127 ---FVDEDALLNMPNLLVDMAEGMMVSPPRLNSS 157
              FVDEDA+ +MP L+ DMA GMM++PP +  S
Sbjct: 163 AAVFVDEDAIFDMPGLIDDMARGMMLTPPAIGRS 196

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WZI4|DRE1F_ORYSI Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 7/154 (4%)

Query: 11  KHPSYRGIRCR--NSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGS-DAVL 67
           +HP YRG+R R   S+WV E+REP+   RIWLGTYPTPEMAA A+DVAA+AL+G   A L
Sbjct: 43  RHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAEL 102

Query: 68  NFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSNDVIGE- 126
           NFP+  ST P   ++S  DIR AAA AA    R         D  +      +    G  
Sbjct: 103 NFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEGTSGGGATATSGRP 162

Query: 127 ---FVDEDALLNMPNLLVDMAEGMMVSPPRLNSS 157
              FVDEDA+ +MP L+ DMA GMM++PP +  S
Sbjct: 163 AAVFVDEDAIFDMPGLIDDMARGMMLTPPAIGRS 196

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SYS6|DRE1C_ARATH Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 14/174 (8%)

Query: 11  KHPSYRGIRCRNS-KWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNF 69
           +HP YRG+R RNS KWV E+REP K TRIWLGT+ T EMAA A+DVAA+AL+G  A LNF
Sbjct: 47  RHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNF 106

Query: 70  PNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQS---------RS 120
            +      +P S+ + +I+ AAA AA +         +D      ME++         +S
Sbjct: 107 ADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTTDA-HGLDMEETLVEAIYTPEQS 165

Query: 121 NDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSY 174
            D    ++DE+A+L M +LL +MAEGM++  P +  + + D  E  D   LWSY
Sbjct: 166 QDAF--YMDEEAMLGMSSLLDNMAEGMLLPSPSVQWNYNFDV-EGDDDVSLWSY 216

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ93|DRE1D_ARATH Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1

 Score =  122 bits (307), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 96/163 (58%), Gaps = 15/163 (9%)

Query: 11  KHPSYRGIRCRNS-KWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNF 69
           +HP YRG+R RNS KWV E+REP K +RIWLGT+PT EMAA A+DVAALAL+G  A LNF
Sbjct: 50  RHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109

Query: 70  PNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPD------------ENQRMEQ 117
            +      +P ++   +I+ AA+ AA +         S               E +R  +
Sbjct: 110 ADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTAAEAEEAAGEGVREGERRAE 169

Query: 118 SRSNDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSD 160
            ++  V   ++D++ALL MPN   +MAEGM++ PP +  + +D
Sbjct: 170 EQNGGVF--YMDDEALLGMPNFFENMAEGMLLPPPEVGWNHND 210

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|P93835|DRE1B_ARATH Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 10/172 (5%)

Query: 11  KHPSYRGIRCRNS-KWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNF 69
           +HP YRG+R RNS KWVSE+REP K TRIWLGT+ T EMAA A+DVAALAL+G  A LNF
Sbjct: 44  RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query: 70  PNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSNDVI----- 124
            +      +P S+ + DI+ AAA AA +      ++ +  +    ME++    +      
Sbjct: 104 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTT-TNHGLDMEETMVEAIYTPEQS 162

Query: 125 -GEF-VDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSY 174
            G F +DE+ +  MP LL +MAEGM++ PP +  + + D   + D   LWSY
Sbjct: 163 EGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYDGEGDGD-VSLWSY 213

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 11  KHPSYRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNF 69
           KHP YRG+R RN  KWVSEIREPRK +RIWLGT+PTPEMAA A+DVAAL++KG+ A+LNF
Sbjct: 47  KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106

Query: 70  PNFVSTYPVPASSSSVDIRNAAAAAA 95
           P    ++P P S S  DI+ AA  AA
Sbjct: 107 PELADSFPRPVSLSPRDIQTAALKAA 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
225455475	237	PREDICTED: ethylene-responsive transcrip	0.931	0.687	0.668	4e-54
224074843	176	AP2/ERF domain-containing transcription	0.948	0.943	0.633	6e-52
449452370	252	PREDICTED: ethylene-responsive transcrip	0.96	0.666	0.645	2e-48
224053975	177	AP2/ERF domain-containing transcription	0.954	0.943	0.653	6e-47
255537275	245	Dehydration-responsive element-binding p	0.988	0.706	0.601	2e-44
78499707	226	DRE-binding protein 3a [Gossypium hirsut	0.902	0.699	0.604	2e-44
225426771	186	PREDICTED: ethylene-responsive transcrip	0.977	0.919	0.609	3e-44
255539561	224	Dehydration-responsive element-binding p	0.942	0.736	0.593	6e-43
297796011	229	AP2 domain-containing protein [Arabidops	0.977	0.746	0.577	1e-42
292668985	235	AP2 domain class transcription factor [M	0.908	0.676	0.64	2e-42

>gi|225455475|ref|XP_002280043.1| PREDICTED: ethylene-responsive transcription factor ERF025-like [Vitis vinifera]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/169 (66%), Positives = 132/169 (78%), Gaps = 6/169 (3%)

Query: 11  KHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFP 70
           +HP YRGIRCR +KWVSEIREPRK+TRIWLGTYPTPEMAA AYDVAALALKG+DA LNFP
Sbjct: 69  RHPFYRGIRCRGNKWVSEIREPRKTTRIWLGTYPTPEMAATAYDVAALALKGTDATLNFP 128

Query: 71  NFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQ--RMEQSRSNDVIG--- 125
           N V +YP+P S+S+ DI  AAAA AA   + K ES   P+  Q  + E + S+ +     
Sbjct: 129 NSVLSYPIPKSTSASDI-RAAAARAAEAQQAKPESSESPNTTQPKKEETTESSSLAAGED 187

Query: 126 EFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSY 174
           +F+DE+ LLNMPNLLVDMAEGM+VSPPRL S PSDDSPENSD + LWSY
Sbjct: 188 QFIDEEELLNMPNLLVDMAEGMLVSPPRLKSQPSDDSPENSDSDSLWSY 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074843|ref|XP_002304466.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222841898|gb|EEE79445.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 114/180 (63%), Positives = 133/180 (73%), Gaps = 14/180 (7%)

Query: 3   AAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKG 62
           A  SSS+K+HP YRGIR R+ KWVSEIREPRK+TRIWLGT+P PEMAAAAYDVA LALKG
Sbjct: 2   ATTSSSSKRHPMYRGIRSRSGKWVSEIREPRKTTRIWLGTFPKPEMAAAAYDVAVLALKG 61

Query: 63  SDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSND 122
           +DAVLNFP+ V TYPVPAS+S  DIRNAA AAAA      + +         +EQ R++ 
Sbjct: 62  ADAVLNFPSSVGTYPVPASTSPTDIRNAANAAAALKKAEMSYN------EALVEQPRNDC 115

Query: 123 VIG--------EFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSY 174
            +G        EFVDE+AL +MPNLLVDMA GM++SPPR+  SPSDDS   SDGE LWSY
Sbjct: 116 AVGTFLASGGEEFVDEEALFDMPNLLVDMAGGMLLSPPRITPSPSDDSQGTSDGESLWSY 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452370|ref|XP_004143932.1| PREDICTED: ethylene-responsive transcription factor ERF026-like [Cucumis sativus] gi|449519924|ref|XP_004166984.1| PREDICTED: ethylene-responsive transcription factor ERF026-like [Cucumis sativus]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 126/172 (73%), Gaps = 4/172 (2%)

Query: 8   STKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVL 67
           + KKH  YRGIRCR+ KWVSEIREPRK+TRIWLGT+PT EMAA AYDVAALAL+G DAVL
Sbjct: 81  TNKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAATAYDVAALALRGGDAVL 140

Query: 68  NFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPD--ENQRMEQSRSNDVIG 125
           NFP  + TYPVPAS+S VDIR AA+ AA + A +  + VS     +   ME       I 
Sbjct: 141 NFPASIPTYPVPASTSPVDIRTAASTAAIAAAAKAVKKVSSTSSVDVGTMEDCSKKMRIE 200

Query: 126 EFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSP-SDDSPENSDG-ERLWSYF 175
           EFVDE+ +  MP LL DMAEGMMVSPPR+NS P SDD  ENSDG E LWSYF
Sbjct: 201 EFVDEEEIFGMPGLLADMAEGMMVSPPRMNSPPLSDDLMENSDGTESLWSYF 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053975|ref|XP_002298066.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222845324|gb|EEE82871.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/182 (65%), Positives = 140/182 (76%), Gaps = 15/182 (8%)

Query: 3   AAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKG 62
           A  SS++K+HP Y GIRCR  KWVSEIREPRK+TRIWLGT+P PEMAAAAYDVAALALKG
Sbjct: 2   ATTSSNSKRHPMYHGIRCRGGKWVSEIREPRKTTRIWLGTFPKPEMAAAAYDVAALALKG 61

Query: 63  SDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRS-N 121
           + AVLNFP+ V TYPVPA++SS DIRNAAAAAA   A +KAE   +      ++Q R+ +
Sbjct: 62  NGAVLNFPSSVGTYPVPATASSTDIRNAAAAAA---ALKKAELSYN---EALVDQPRNDH 115

Query: 122 DVIG--------EFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWS 173
           + IG        EFVDE+AL +MPNLLVDMA GM++SPPR+ S PSDDS  NSDGE LWS
Sbjct: 116 NAIGAYLASSGEEFVDEEALFDMPNLLVDMAGGMLLSPPRITSPPSDDSQGNSDGESLWS 175

Query: 174 YF 175
           YF
Sbjct: 176 YF 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537275|ref|XP_002509704.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis] gi|223549603|gb|EEF51091.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 135/188 (71%), Gaps = 15/188 (7%)

Query: 1   MAAAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALAL 60
           MA   S+  K+HP YRGIR R+ KWVSEIREPRK+TRIWLGT+ TPEMAAAAYDVAALAL
Sbjct: 60  MATTSSAPNKRHPFYRGIRSRSGKWVSEIREPRKTTRIWLGTFATPEMAAAAYDVAALAL 119

Query: 61  KGSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAA-----SCARRKAESVSDPDENQRM 115
           KG DA+LNFP  V +YPVPASSSS DIRNAA AAAA       ++   +  +  D++   
Sbjct: 120 KGGDAILNFPGSVGSYPVPASSSSTDIRNAAIAAAAFKRNEMNSQELGQLQARMDDHNHT 179

Query: 116 EQSRSNDVIGE--------FVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSD 167
             S + +++          FVDE+AL +MPNLLVDMAEGM++SPPR+ S  SDDSP  SD
Sbjct: 180 RTSSTTNLMSTTGPASDQGFVDEEALFHMPNLLVDMAEGMLLSPPRITS--SDDSPGTSD 237

Query: 168 GERLWSYF 175
           GE LWSYF
Sbjct: 238 GENLWSYF 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78499707|gb|ABB45860.1| DRE-binding protein 3a [Gossypium hirsutum]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 124/167 (74%), Gaps = 9/167 (5%)

Query: 15  YRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVS 74
           YRG+R R+ KWVSEIREPRK+TRIWLGTYPTPEMAA AYDVAALALKG DA LNFP+ V 
Sbjct: 61  YRGVRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAATAYDVAALALKGPDAELNFPDMVH 120

Query: 75  TYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSNDVI------GEFV 128
           +YP   S+S+ DIR AAA+AAA  +R   +SV++     + E + S   +       EF+
Sbjct: 121 SYPKVGSTSATDIRAAAASAAA--SRLLPKSVTNTGSLSKNEDTTSTTAMEITCSGQEFI 178

Query: 129 DEDALLNMPNLLVDMAEGMMVSPPR-LNSSPSDDSPENSDGERLWSY 174
           DE+ LLN PNL+VDMA GM+VSPP  +NS PSDDSP+NSD + LW+Y
Sbjct: 179 DEEELLNFPNLVVDMAGGMLVSPPNWINSPPSDDSPDNSDVDTLWTY 225

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426771|ref|XP_002276184.1| PREDICTED: ethylene-responsive transcription factor ERF024-like [Vitis vinifera]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/182 (60%), Positives = 133/182 (73%), Gaps = 11/182 (6%)

Query: 2   AAAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALK 61
            +A   S  +HP YRGIR R+ KWVSEIREPRK+TRIWLGT+PT EMAAAAYDVAALALK
Sbjct: 8   GSAKQPSPGRHPMYRGIRSRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALK 67

Query: 62  GSDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQRMEQSRSN 121
           G++AVLNFP+FV +YPVPAS S  DIR   +AAAA+ A +KA++      + R E     
Sbjct: 68  GTEAVLNFPDFVHSYPVPASGSPSDIR---SAAAAAAALKKAQTDDGSAAHSRREDDGRF 124

Query: 122 DVI--------GEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWS 173
           DV         GEFVDE+AL +MPNLLVDMAEGM+V+PPR+N   S  +PEN DG+ LWS
Sbjct: 125 DVHTNTNTTSEGEFVDEEALFDMPNLLVDMAEGMLVTPPRINVPSSPYTPENYDGDSLWS 184

Query: 174 YF 175
           YF
Sbjct: 185 YF 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539561|ref|XP_002510845.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis] gi|223549960|gb|EEF51447.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 130/187 (69%), Gaps = 22/187 (11%)

Query: 3   AAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKG 62
            A S  T +HP YRGIRCR+ KWVSEIREPRK+TRIWLGTY TPEMAAAAYDVAALALKG
Sbjct: 44  GASSGQTGRHPIYRGIRCRSGKWVSEIREPRKTTRIWLGTYTTPEMAAAAYDVAALALKG 103

Query: 63  SDAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKAESVSDPDENQ--------- 113
            D  LNFP  + +YP+P S+S+ DIR AAAA+AA+  +   E+VS+PD  +         
Sbjct: 104 PDTALNFPESILSYPIPISTSATDIR-AAAASAAAARQPNQETVSNPDGGRDEAKWKAAT 162

Query: 114 ------RMEQSRSNDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSD 167
                 R E  +      EF+DE+A LN PNLLVDMA  MMVSPPR+N+  SDDSP NSD
Sbjct: 163 SSSGTSRFESDQ------EFIDEEAFLNFPNLLVDMAGAMMVSPPRINTPSSDDSPRNSD 216

Query: 168 GERLWSY 174
            E LWSY
Sbjct: 217 AEGLWSY 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796011|ref|XP_002865890.1| AP2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311725|gb|EFH42149.1| AP2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 123/175 (70%), Gaps = 4/175 (2%)

Query: 4   APSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGS 63
            P+  + KH  +RGIR RN KWVSEIREPRK+TRIWLGTYP PEMAAAAYDVAALALKG 
Sbjct: 54  TPTGLSGKHSVFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGP 113

Query: 64  DAVLNFPNFVSTYPVPASSSSVDIRNAAAAAAASCARRKA--ESVSDPDENQRMEQSRSN 121
           DAVLNFP    TY  P S+S+ DIR AA+ AA          E V +P +  + E+    
Sbjct: 114 DAVLNFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDPGGDEKVLEPGQPGKKEEEEEV 173

Query: 122 DVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPS--DDSPENSDGERLWSY 174
               EF+DE+A+LNMP LL +MAEGM++SPPR+  +P+  DDSPEN +G+ LWSY
Sbjct: 174 SCSLEFMDEEAMLNMPTLLTEMAEGMLMSPPRMMITPTVEDDSPENHEGDNLWSY 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668985|gb|ADE41147.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 132/175 (75%), Gaps = 16/175 (9%)

Query: 10  KKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNF 69
           K HP YRGIRCRN KWVSEIREPRK+TRIWLGTYP PEMAAAAYDVAA+ALKG D  LNF
Sbjct: 67  KGHPVYRGIRCRNGKWVSEIREPRKTTRIWLGTYPKPEMAAAAYDVAAIALKGPDTPLNF 126

Query: 70  PNFVSTYPVPASSSSVDIRNAAAAAAASCA------RRKAESVSDPDENQRMEQSRSNDV 123
           PN + TY +PASS++ DIR+AAA AA S A       R++   S+P     ++      V
Sbjct: 127 PNSILTYLIPASSAASDIRSAAARAAQSRANKLVPRERESGGRSEPGS---VDNEGVGGV 183

Query: 124 IG----EFVDEDALLNMPNLLVDMAEGMMVSPPRLNSSPSDDSPENSDGERLWSY 174
           +G    EF+DE+ALLNMPNLLVDMAEGM+VSPPR++   SD+SPENSDGE LW+Y
Sbjct: 184 VGQQEEEFMDEEALLNMPNLLVDMAEGMLVSPPRIS---SDNSPENSDGENLWNY 235

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2195062	192	AT1G12630 [Arabidopsis thalian	0.994	0.906	0.468	2.4e-35
TAIR|locus:2173063	232	AT5G52020 [Arabidopsis thalian	0.937	0.706	0.461	1.3e-34
TAIR|locus:2044845	184	HRD "HARDY" [Arabidopsis thali	0.937	0.891	0.421	2.7e-29
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.771	0.572	0.419	1e-22
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.685	0.406	0.393	4.7e-22
TAIR|locus:2173113	224	CBF4 "C-repeat-binding factor	0.811	0.633	0.356	3.9e-21
TAIR|locus:2131854	213	CBF1 "C-repeat/DRE binding fac	0.92	0.755	0.346	6.3e-21
TAIR|locus:2131849	216	DREB1A "dehydration response e	0.937	0.759	0.323	2.7e-20
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.48	0.385	0.517	2.7e-20
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.445	0.330	0.556	4.4e-20

TAIR|locus:2195062 AT1G12630 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 88/188 (46%), Positives = 106/188 (56%)

Query:     1 MAAAPSSSTKKHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXL 60
             MA+A   S +K P YRGIRCR+ KWVSEIREPRK+TRIWLGTYP  EM           L
Sbjct:     5 MASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMAL 64

Query:    61 KGSDAVLNFPNFVSTYPVPASSSSVDIRNXXXXXXX--SCAR----RKA-ESVSDPDENQ 113
             KG +AVLNFP  V +YPVP S+S+ DIR           C      +KA E  S   +++
Sbjct:    65 KGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKSR 124

Query:   114 RMEQSRSNDV-----IG-EFVDEDALLNMPNLLVDMAEGMMVSPPR-LXXXXXXXXXXXX 166
               E    NDV      G EF+DE+ +LNMPNLL +MAEGMMV+PP  +            
Sbjct:   125 ARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPENS 184

Query:   167 XGERLWSY 174
               E LW Y
Sbjct:   185 NDEDLWGY 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2173063 AT5G52020 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 79/171 (46%), Positives = 97/171 (56%)

Query:    11 KHPSYRGIRCRNSKWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLNFP 70
             KH  +RGIR RN KWVSEIREPRK+TRIWLGTYP PEM           LKG DAVLNFP
Sbjct:    61 KHSIFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFP 120

Query:    71 NFVSTYPVPASSSSVDIRNXXXXXXXSCARRKA--ESVSDP---DENQRMEQSRSNDVIG 125
                 TY  P S+S+ DIR             +   E V +P    + + +E+   N    
Sbjct:   121 GLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQPGKEEELEEVSCNSCSL 180

Query:   126 EFVDEDALLNMPNLLVDMAEGMMVSPPRLXXXXXXXXXX--XXXGERLWSY 174
             EF+DE+A+LNMP LL +MAEGM++SPPR+               G+ LWSY
Sbjct:   181 EFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGDNLWSY 231

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2044845 HRD "HARDY" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 73/173 (42%), Positives = 94/173 (54%)

Query:    11 KHPSYRGIRCR-NS-KWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLN 68
             +HP YRG+R R NS KWVSEIREPRK  RIWLGT+ TPEM           LKGS A LN
Sbjct:    11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELN 70

Query:    69 FPNFVSTYPVPASSSSVDIRNXXXXXXXSCARRKAESVSDPDENQR-----MEQSRSNDV 123
             FPN VS+ P P S S  DI+        +    +   V   + +Q      M  S  N  
Sbjct:    71 FPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMNSSYDNTN 130

Query:   124 IGEFVDEDALLNMPNLLVDMAEGMMVSPPRLXXXXXXXXXXXXXG--ERLWSY 174
             +  F+DED + +MPN+L++MAEGM++SPPR              G  + LW++
Sbjct:   131 MNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDYLWNF 183

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 60/143 (41%), Positives = 80/143 (55%)

Query:     2 AAAPSSSTKKHPSYRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXL 60
             ++A SSS+ +HP YRG+R R+  KWVSEIR+PRK TRIWLGT+ T +M           +
Sbjct:    48 SSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTI 107

Query:    61 KGSDAVLNFPNFVSTYPVPASSSSVDIRNXXXXXXXSCARRKAESVSDPDEN-QRMEQSR 119
             KGS AVLNFP   S +P PASSS  DI+             K   + + DE  +    S 
Sbjct:   108 KGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEK---LLEKDEAPEAPPSSE 164

Query:   120 SNDVIGEFVDEDAL---LNMPNL 139
             S+ V  E  DE+ L   + +PN+
Sbjct:   165 SSYVAAESEDEERLEKIVELPNI 187

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 48/122 (39%), Positives = 65/122 (53%)

Query:    11 KHPSYRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLNF 69
             KHP+YRG+R R+  KWVSEIREPRK +RIWLGTYPT EM           +KG+ A LNF
Sbjct:    96 KHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNF 155

Query:    70 PNFVSTYPVPASSSSVDIRNXXXXXXXSCARRKAESVSDPDENQRMEQSRSNDVIGEFVD 129
             P      P P ++S  DI+        +  +     VS+ +  + +E   S  V+ +   
Sbjct:   156 PKLAGELPRPVTNSPKDIQAAASLAAVNW-QDSVNDVSNSEVAEIVEAEPSRAVVAQLFS 214

Query:   130 ED 131
              D
Sbjct:   215 SD 216

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2173113 CBF4 "C-repeat-binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 56/157 (35%), Positives = 82/157 (52%)

Query:    11 KHPSYRGIRCRNS-KWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLNF 69
             +HP YRG+R RNS KWV E+REP K +RIWLGT+PT EM           L+G  A LNF
Sbjct:    50 RHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109

Query:    70 PNFVSTYPVP-----------ASSSSVDIRNXXXXXXXSCARRKAESVSDP-DENQRMEQ 117
              +      +P           AS +++  +N         A    E+  +   E +R  +
Sbjct:   110 ADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTAAEAEEAAGEGVREGERRAE 169

Query:   118 SRSNDVIGEFVDEDALLNMPNLLVDMAEGMMVSPPRL 154
              ++  V   ++D++ALL MPN   +MAEGM++ PP +
Sbjct:   170 EQNGGVF--YMDDEALLGMPNFFENMAEGMLLPPPEV 204

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2131854 CBF1 "C-repeat/DRE binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 60/173 (34%), Positives = 86/173 (49%)

Query:    11 KHPSYRGIRCRNS-KWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLNF 69
             +HP YRG+R RNS KWVSE+REP K TRIWLGT+ T EM           L+G  A LNF
Sbjct:    44 RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query:    70 PNFVSTYPVPASSSSVDIRNXXXXXXXSCARRKAESVSDPDENQRMEQSRSNDVI----- 124
              +      +P S+ + DI+        +      ++ +  +    ME++    +      
Sbjct:   104 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTT-NHGLDMEETMVEAIYTPEQS 162

Query:   125 -GEF-VDEDALLNMPNLLVDMAEGMMVSPPRLXXXXXXXXXXXXXGE-RLWSY 174
              G F +DE+ +  MP LL +MAEGM++ PP +             G+  LWSY
Sbjct:   163 EGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYDGEGD--GDVSLWSY 213

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009409 "response to cold" evidence=IEP;IMP;TAS

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

TAIR|locus:2131849 DREB1A "dehydration response element B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 55/170 (32%), Positives = 83/170 (48%)

Query:    11 KHPSYRGIRCRNS-KWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLNF 69
             +HP YRG+R RNS KWV E+REP K TRIWLGT+ T EM           L+G  A LNF
Sbjct:    47 RHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 106

Query:    70 PNFVSTYPVPASSSSVDIRNXXXXXXXSCARRKAESVSDP--DENQRMEQSRSNDVIGE- 126
              +      +P S+ + DI+        +      ++ +D   D  + + ++       E 
Sbjct:   107 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDEMCDATTDHGFDMEETLVEAIYTAEQSEN 166

Query:   127 --FVDEDALLNMPNLLVDMAEGMMVSPPRLXXXXXXXXXXXXXGERLWSY 174
               ++ ++A+  MP+LL +MAEGM++  P +                LWSY
Sbjct:   167 AFYMHDEAMFEMPSLLANMAEGMLLPLPSVQWNHNHEVDGDDDDVSLWSY 216

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IEP;RCA;IDA;IMP;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 44/85 (51%), Positives = 57/85 (67%)

Query:     5 PSSSTKKHPSYRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGS 63
             P   + KHP YRG+R RN  KWVSEIREPRK +RIWLGT+P+PEM           +KG+
Sbjct:    26 PVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGA 85

Query:    64 DAVLNFPNFVSTYPVPASSSSVDIR 88
              A+LNFP+   ++P P+S S  DI+
Sbjct:    86 SAILNFPDLAGSFPRPSSLSPRDIQ 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 44/79 (55%), Positives = 53/79 (67%)

Query:    11 KHPSYRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLNF 69
             KHP YRG+R RN  KWVSEIREPRK +RIWLGT+PTPEM           +KG+ A+LNF
Sbjct:    47 KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106

Query:    70 PNFVSTYPVPASSSSVDIR 88
             P    ++P P S S  DI+
Sbjct:   107 PELADSFPRPVSLSPRDIQ 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJ90	ERF25_ARATH	No assigned EC number	0.5847	0.9371	0.7068	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-27
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-26
pfam00847	53	pfam00847, AP2, AP2 domain	4e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 97.3 bits (243), Expect = 2e-27
 Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 14 SYRGIRCR-NSKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPN 71
           YRG+R R   KWV+EIR+P K  R+WLGT+ T E AA AYD AA   +G  A LNFPN
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 94.3 bits (235), Expect = 3e-26
 Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 13 PSYRGIRCRNS-KWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPN 71
            YRG+R R   KWV+EIR+P    RIWLGT+ T E AA AYD AAL L+GS AVLNFP+
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 13 PSYRGIRCRNS--KWVSEIREP--RKSTRIWLGTYPTPEMAAAAYDVAALALKG 62
            Y+G+R      +WV+EIR+P  +K  R  LGT+ T E AA A   A L L+G
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.47
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.18
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	80.36

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.4e-21  Score=132.44  Aligned_cols=60  Identities=62%  Similarity=1.035  Sum_probs=57.0

Q ss_pred             CceeEeEeeC-CeeEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 030591           13 PSYRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNF   72 (175)
Q Consensus        13 s~yrGVr~r~-GkW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~~a~lNFp~s   72 (175)
                      |+|+||++++ |||+|+|+++..++++|||+|+|+|||++|||.+++.++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988 99999999976688999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=3.3e-20  Score=127.14  Aligned_cols=61  Identities=56%  Similarity=0.980  Sum_probs=57.8

Q ss_pred             ceeEeEeeC-CeeEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 030591           14 SYRGIRCRN-SKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFVS   74 (175)
Q Consensus        14 ~yrGVr~r~-GkW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~~a~lNFp~s~~   74 (175)
                      +|+||++++ |||+|+|+++.+++++|||+|+|+|||++|||.+++.++|..+++|||.+.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            599999888 9999999999889999999999999999999999999999999999998654

>PHA00280 putative NHN endonuclease

Probab=99.47  E-value=1.3e-13  Score=106.20  Aligned_cols=58  Identities=14%  Similarity=0.225  Sum_probs=52.3

Q ss_pred             CCCCCCCCceeEeEeeC--CeeEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 030591            6 SSSTKKHPSYRGIRCRN--SKWVSEIREPRKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAV   66 (175)
Q Consensus         6 ~~~~~~~s~yrGVr~r~--GkW~a~I~~~~k~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~~a~   66 (175)
                      ..+++++|+|+||++++  |||+|+|++  +||+++||.|+++|+|+.||+ ++..++|.+++
T Consensus        60 ~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         60 KTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            45678999999999877  999999999  888999999999999999997 67789999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.18  E-value=5.6e-11  Score=78.52  Aligned_cols=51  Identities=25%  Similarity=0.406  Sum_probs=45.1

Q ss_pred             CceeEeEeeC--CeeEEEEecCCC---CeEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 030591           13 PSYRGIRCRN--SKWVSEIREPRK---STRIWLGTYPTPEMAAAAYDVAALALKGS   63 (175)
Q Consensus        13 s~yrGVr~r~--GkW~a~I~~~~k---~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~   63 (175)
                      |+|+||++++  ++|+|+|++...   +++++||.|.++++|+++++.+.+.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999887  999999999421   48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=80.36  E-value=5.8  Score=24.93  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             eeEEEEe--cC--CCCeEEeccCCCCHHHHHHHHHHHHHHh
Q 030591           24 KWVSEIR--EP--RKSTRIWLGTYPTPEMAAAAYDVAALAL   60 (175)
Q Consensus        24 kW~a~I~--~~--~k~~ri~LGtf~t~eeAA~Ayd~aa~~~   60 (175)
                      +|..+|.  .+  ++.++++-+-|.|..||-.+.......+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  33  5568999999999999999988876665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-06
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-06

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 11 KHPSYRGIRCRN-SKWVSEIREPRK-STRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLN 68
          K   YRG+R R   K+ +EIR+P K   R+WLGT+ T E            ++GS A+LN
Sbjct: 2  KGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 61
Query: 69 FP 70
          FP
Sbjct: 62 FP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 11 KHPSYRGIRCRN-SKWVSEIREPRK-STRIWLGTYPTPEMXXXXXXXXXXXLKGSDAVLN 68
          KH  YRG+R R   K+ +EIR+P K   R+WLGT+ T E            ++GS A+LN
Sbjct: 1  KH--YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58
Query: 69 FP 70
          FP
Sbjct: 59 FP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-23

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 87.0 bits (216), Expect = 1e-23
 Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 15 YRGIRCRNS-KWVSEIREP-RKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNF 72
          YRG+R R   K+ +EIR+P +   R+WLGT+ T E AA AYD AA  ++GS A+LNFP  
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Query: 73 V 73
          V
Sbjct: 63 V 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.51
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	83.43

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=4e-26  Score=156.12  Aligned_cols=60  Identities=55%  Similarity=0.923  Sum_probs=57.0

Q ss_pred             ceeEeEeeC-CeeEEEEecCCC-CeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 030591           14 SYRGIRCRN-SKWVSEIREPRK-STRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNFV   73 (175)
Q Consensus        14 ~yrGVr~r~-GkW~a~I~~~~k-~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~~a~lNFp~s~   73 (175)
                      +||||++|+ |||+|+|++|.+ |+++|||||+|+||||+|||.|+++++|..+++|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            699999999 999999999975 799999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.51  E-value=0.4  Score=33.35  Aligned_cols=23  Identities=13%  Similarity=0.429  Sum_probs=20.1

Q ss_pred             CCCCceeEeEeeC--CeeEEEEecC
Q 030591           10 KKHPSYRGIRCRN--SKWVSEIREP   32 (175)
Q Consensus        10 ~~~s~yrGVr~r~--GkW~a~I~~~   32 (175)
                      ..+|+|.||++.+  +.|+|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            5689999999988  9999999985

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=83.43  E-value=1.1  Score=31.29  Aligned_cols=37  Identities=30%  Similarity=0.409  Sum_probs=30.6

Q ss_pred             eeEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 030591           24 KWVSEIREPRKSTRIWLGTYP--TPEMAAAAYDVAALAL   60 (175)
Q Consensus        24 kW~a~I~~~~k~~ri~LGtf~--t~eeAA~Ayd~aa~~~   60 (175)
                      .|+-+.+..++.+++-||.|+  |.++|....+.+...+
T Consensus        37 ~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           37 HWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            699999988888899999997  5888888777766665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-25

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.5 bits (225), Expect = 2e-25
 Identities = 31/58 (53%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 15 YRGIRCRNS-KWVSEIREP-RKSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFP 70
          YRG+R R   K+ +EIR+P +   R+WLGT+ T E AA AYD AA  ++GS A+LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=1.1e-25  Score=152.54  Aligned_cols=59  Identities=53%  Similarity=0.906  Sum_probs=55.2

Q ss_pred             ceeEeEeeC-CeeEEEEecCC-CCeEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 030591           14 SYRGIRCRN-SKWVSEIREPR-KSTRIWLGTYPTPEMAAAAYDVAALALKGSDAVLNFPNF   72 (175)
Q Consensus        14 ~yrGVr~r~-GkW~a~I~~~~-k~~ri~LGtf~t~eeAA~Ayd~aa~~~~G~~a~lNFp~s   72 (175)
                      .||||++|+ |||+|+|++|. ++++||||||+|+||||+|||.|++.++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999998 99999999875 568999999999999999999999999999999999964