Citrus Sinensis ID: 030599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MDAKRKNKMVKVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Secondary Structure (PSIPRED)
ccHHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHcccHHHcccccEEEEccEEHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHEEEEcccccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEccHHHHHHHHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mdakrknkMVKVVKKEEAtaafvdsddddddggeydlcpqeegddnrnssskknkgssggsglrscqvdkcgadlsdakqyhrrhkvCEVHAKAQVVLMGGIRQRFCQQCSRRLAGHnerrrknaaesngegssckgtgtgtqlkdlvcgklddkgrikisiqenatckhfqir
Flexible Loop (DISEMBL)
mdakrknkmvkvvkkeeataafvdsddddddGGEYDLCpqeegddnrnssskknkgssggsglrscQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRRlaghnerrrknaaesngegssckgtgtgtqlkdlvcgklddkgrikisiqenatckhfqir
Low Complexity Region (SEG)
MDakrknkmvkvvkkeeataafvdsddddddGGEYDLCPQEEGDDNRnssskknkgssggsgLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Disordered region (IsUnstruct)
*****************************************************************************AKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR*******************************LKDLVCGKLDDKGRIKISIQENATC******
Disordered Region (DISOPRED)
********************************************************************DKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS***************************************************************
Disordered Region (DISEMBL)
***********VVKKEEATAAFVDSDDDDDDGGEYDLCPQ*************************CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRRL**********************GTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Disordered Region (DISPRO)
*****KNKMVKVVKKEEATAAF*D*************************************GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRRLAG***************************************************C******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAKRKNKMVKVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9S7A9	174	Squamosa promoter-binding	yes	no	0.695	0.695	0.442	3e-23
Q9S7P5	927	Squamosa promoter-binding	no	no	0.712	0.133	0.440	6e-23
Q9S758	181	Squamosa promoter-binding	no	no	0.425	0.408	0.555	4e-21
Q38741	131	Squamosa promoter-binding	N/A	no	0.5	0.664	0.490	8e-21
Q6Z461	216	Squamosa promoter-binding	yes	no	0.402	0.324	0.540	4e-19
Q38740	171	Squamosa promoter-binding	N/A	no	0.396	0.403	0.552	2e-18
Q9SMX9	881	Squamosa promoter-binding	no	no	0.390	0.077	0.535	2e-18
Q8RY95	1035	Squamosa promoter-binding	no	no	0.419	0.070	0.539	3e-18
Q94JW8	405	Squamosa promoter-binding	no	no	0.545	0.234	0.429	3e-18
P93015	131	Squamosa promoter-binding	no	no	0.425	0.564	0.526	9e-18

>sp|Q9S7A9|SPL4_ARATH Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 87/149 (58%), Gaps = 28/149 (18%)

Query: 44  DDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIR 103
           D  R S    N+G S    LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ 
Sbjct: 36  DRVRGSRGSINRGGS----LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLN 91

Query: 104 QRFCQQCS----------------RRLAGHNERRRKNAAESN-GEGSSCKGTGTGTQLKD 146
           QRFCQQCS                RRLAGHNERRRK++ ES  GEGS  +G      +++
Sbjct: 92  QRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQVVMQN 151

Query: 147 LVCGKLDDKGRIKISI-QENATCKHFQIR 174
                  ++ R+++++   N++ K  QIR
Sbjct: 152 ------QERSRVEMTLPMPNSSFKRPQIR 174

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 28/152 (18%)

Query: 1   MDAKRKNKMVKVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGG 60
           M+ K+K + V VV  EE        +  DDD     L     G +N   +  K     GG
Sbjct: 70  MEKKKKRRAVTVVAMEE-------DNLKDDDAHRLTL---NLGGNNIEGNGVKKTKLGGG 119

Query: 61  SGLRS--CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS------- 111
              R+  CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCS       
Sbjct: 120 IPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEE 179

Query: 112 ---------RRLAGHNERRRKNAAESNGEGSS 134
                    RRLAGHN+RRRK   ++ G G+S
Sbjct: 180 FDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S758|SPL5_ARATH Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 16/90 (17%)

Query: 64  RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS------------ 111
           R CQVD+C  +L++AKQY+RRH+VCEVHAKA    + G+RQRFCQQCS            
Sbjct: 61  RLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAK 120

Query: 112 ----RRLAGHNERRRKNAAESNGEGSSCKG 137
               RRLAGHNERRRK + +S GEGS  +G
Sbjct: 121 RSCRRRLAGHNERRRKISGDSFGEGSGRRG 150

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 17/104 (16%)

Query: 43  GDDNRNSSSKKNKGS-SGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGG 101
           G+D++ + +    G  + GS  RSCQV+ C A++++AK YHRRHKVCE HAKA VVL  G
Sbjct: 28  GEDSKKTRALTPSGKRASGSTQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSG 87

Query: 102 IRQRFCQQCS----------------RRLAGHNERRRKNAAESN 129
           ++QRFCQQCS                RRLAGHNERRRK++ +++
Sbjct: 88  LQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSHDTH 131

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

>sp|Q6Z461|SPL13_ORYSJ Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 61/87 (70%), Gaps = 17/87 (19%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-------------- 111
           CQV++CG DLS+A +Y+RRHKVC+ H+K  VVL+ G+RQRFCQQCS              
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169

Query: 112 --RRLAGHNERRRKNAAESNGEGSSCK 136
             RRLAGHNERRRK+AA++   G +C+
Sbjct: 170 CRRRLAGHNERRRKSAADT-AHGENCR 195

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 58/85 (68%), Gaps = 16/85 (18%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-------------- 111
           C V+ CGADL + K+Y++RH+VCEVHAKA VV + G+ QRFCQQCS              
Sbjct: 85  CLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQTKRS 144

Query: 112 --RRLAGHNERRRKNAAESNGEGSS 134
             RRLAGHNERRRK++ ES+ EG S
Sbjct: 145 CRRRLAGHNERRRKSSLESHKEGRS 169

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 51/84 (60%), Gaps = 16/84 (19%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-------------- 111
           CQV+ C ADLS  K YHRRHKVCE+H+KA    +GGI QRFCQQCS              
Sbjct: 106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRS 165

Query: 112 --RRLAGHNERRRKNAAESNGEGS 133
             RRLAGHN+RRRK   E    G+
Sbjct: 166 CRRRLAGHNKRRRKTNPEPGANGN 189

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 52/89 (58%), Gaps = 16/89 (17%)

Query: 51  SKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQC 110
           +KK +  S G     CQVD C  DLS AK YHRRHKVCEVH+KA   L+G   QRFCQQC
Sbjct: 105 NKKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQC 164

Query: 111 S----------------RRLAGHNERRRK 123
           S                RRLAGHN RRRK
Sbjct: 165 SRFHLLSEFDEGKRSCRRRLAGHNRRRRK 193

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 65/121 (53%), Gaps = 26/121 (21%)

Query: 21  AFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQ 80
           +F+D  +DDDD                   SKK++ S+  S    CQV  C  DLS +K 
Sbjct: 89  SFLDLGNDDDDTSSRGFA----------LPSKKSRASNLCSQNPLCQVYGCSKDLSSSKD 138

Query: 81  YHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKN 124
           YH+RH+VCE H+K  VV++ G+ QRFCQQCS                RRLAGHNERRRK 
Sbjct: 139 YHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKP 198

Query: 125 A 125
           A
Sbjct: 199 A 199

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|P93015|SPL3_ARATH Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 60/93 (64%), Gaps = 19/93 (20%)

Query: 52  KKNKG-SSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQC 110
           KK KG ++  SG+  CQV+ C AD+S AKQYH+RHKVC+ HAKA  V + G+ QRFCQQC
Sbjct: 41  KKQKGKATSSSGV--CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQC 98

Query: 111 S----------------RRLAGHNERRRKNAAE 127
           S                RRLAGHNERRRK+  +
Sbjct: 99  SRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
62856979	175	squamosa promoter binding-like protein [	0.810	0.805	0.607	2e-42
255553683	198	Squamosa promoter-binding protein, putat	0.890	0.782	0.538	1e-39
225446416	169	PREDICTED: squamosa promoter-binding-lik	0.856	0.881	0.533	2e-39
302399065	188	SPL domain class transcription factor [M	0.902	0.835	0.494	9e-34
63115357	108	putative squamosa promoter-binding prote	0.528	0.851	0.669	2e-31
224117134	161	predicted protein [Populus trichocarpa]	0.620	0.670	0.585	1e-30
356549906	124	PREDICTED: LOW QUALITY PROTEIN: squamosa	0.614	0.862	0.573	6e-30
255584731	198	Squamosa promoter-binding protein, putat	0.620	0.545	0.551	3e-28
449456643	202	PREDICTED: squamosa promoter-binding-lik	0.689	0.594	0.510	3e-28
225461502	204	PREDICTED: squamosa promoter-binding-lik	0.586	0.5	0.523	2e-25

>gi|62856979|gb|AAY16440.1| squamosa promoter binding-like protein [Betula platyphylla]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 111/158 (70%), Gaps = 17/158 (10%)

Query: 33  GEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHA 92
            E D    EE  ++     KK KG  G  G R CQ +KC ADLSD KQYH+RHKVCE HA
Sbjct: 19  AEEDQVSDEELVESGVEEEKKKKGVVGSGGKRCCQAEKCTADLSDGKQYHKRHKVCEHHA 78

Query: 93  KAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKNAAESNGEGSSCK 136
           KAQVVL+GG+RQRFCQQCS                RRLAGHNERRR+N AES+ EGSS K
Sbjct: 79  KAQVVLVGGMRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRENTAESHAEGSSRK 138

Query: 137 GTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 174
           GTGT  QLKD+VCG++DD+GRI+I+I EN+T KHFQIR
Sbjct: 139 GTGT-HQLKDIVCGQVDDRGRIQITIHENSTYKHFQIR 175

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553683|ref|XP_002517882.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223542864|gb|EEF44400.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 122/193 (63%), Gaps = 38/193 (19%)

Query: 11  KVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSG-------- 62
           +VVK+E A     +  DDD+  G  +L     G D    S+KK K  SG +G        
Sbjct: 15  RVVKEELAHEIDRELSDDDEYLGMGNL-----GGDF--ESNKKKKVVSGDAGGRKKGSFG 67

Query: 63  -----LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS------ 111
                +R CQ +KC ADL+DAK YHRRHKVCE HAKAQ+VL+ GIRQRFCQQCS      
Sbjct: 68  GGGVGMRCCQAEKCMADLNDAKPYHRRHKVCEYHAKAQIVLVAGIRQRFCQQCSRFHELI 127

Query: 112 ----------RRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKIS 161
                     RRLAGHNERRRKN  ES+ EGSS +  GTGTQLKD+V G++DD GRIKI+
Sbjct: 128 EFDETKRSCRRRLAGHNERRRKNTTESHTEGSSHR--GTGTQLKDMVFGQVDDSGRIKIT 185

Query: 162 IQENATCKHFQIR 174
           IQEN T KHFQIR
Sbjct: 186 IQENTTYKHFQIR 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446416|ref|XP_002275728.1| PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|302143318|emb|CBI21879.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 118/180 (65%), Gaps = 31/180 (17%)

Query: 11  KVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDK 70
           K+VKKE      VD DD          C +   DD +  ++    G    + +R CQ ++
Sbjct: 5   KMVKKEMEGTEEVDEDDQLG-------CSE---DDKKKKAAAGGSGKKAAAAMRCCQAER 54

Query: 71  CGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRL 114
           C ADL+DAKQYHRRHKVCE HAKAQVV++GGIRQRFCQQCS                RRL
Sbjct: 55  CTADLTDAKQYHRRHKVCEHHAKAQVVVVGGIRQRFCQQCSRFHELSEFDEAKRSCRRRL 114

Query: 115 AGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 174
           AGHNERRRKN+A+ + EGSS K    GTQLK++VCG++DD+GRI+I+IQENA  KHFQIR
Sbjct: 115 AGHNERRRKNSAD-HAEGSSRK----GTQLKEIVCGQVDDRGRIQITIQENAAYKHFQIR 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399065|gb|ADL36827.1| SPL domain class transcription factor [Malus x domestica]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 114/176 (64%), Gaps = 19/176 (10%)

Query: 16  EEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADL 75
           E+   A V   ++++  GE  +  +++G   R+ SS  + G  GG  +R CQ D+C ADL
Sbjct: 15  EKPRVAVVVKKEEEEFNGELQVDRKKKGGLKRSLSSSSSSGGGGGGAMRRCQADRCTADL 74

Query: 76  SDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNE 119
           S+ KQYHR+HKVC++H+K+QVVL+ G+ QRFCQQCS                R LAGHNE
Sbjct: 75  SEEKQYHRKHKVCDLHSKSQVVLVSGLHQRFCQQCSRFHQLPEFDDTKRSCRRHLAGHNE 134

Query: 120 RRRKNAAESNG-EGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 174
           RRRKN AES+  EGSSC   G GTQ KD VCG++DD GRI+I+I  N+  KHF IR
Sbjct: 135 RRRKNPAESHAVEGSSC-NVGAGTQFKD-VCGQVDDSGRIRITIPGNSIHKHFHIR 188

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|63115357|gb|AAY33857.1| putative squamosa promoter-binding protein [Betula platyphylla]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 84/109 (77%), Gaps = 17/109 (15%)

Query: 82  HRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKNA 125
           H+RHKVCE H KAQVVL+GG+RQRFCQQCS                RRLAGHNERRRKN 
Sbjct: 1   HKRHKVCEHHPKAQVVLVGGMRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNT 60

Query: 126 AESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 174
           AES+ EGSS KGTGT  QLKD+VCG++DD+GRI+I+I EN+T KHFQIR
Sbjct: 61  AESHAEGSSRKGTGTH-QLKDIVCGQVDDRGRIQITIHENSTYKHFQIR 108

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117134|ref|XP_002317486.1| predicted protein [Populus trichocarpa] gi|222860551|gb|EEE98098.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 92/128 (71%), Gaps = 20/128 (15%)

Query: 65  SCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS------------- 111
           SCQV+KCGA+L+DAK+YHRRHKVCEVHAK+  V++ G+RQRFCQQCS             
Sbjct: 36  SCQVEKCGANLTDAKRYHRRHKVCEVHAKSPAVVVAGLRQRFCQQCSRFHELLEFDETKR 95

Query: 112 ---RRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISI--QENA 166
              RRLAGHNERRRKN AES GEGSS K  G GTQLK+  C + D++GR ++SI  Q ++
Sbjct: 96  SCRRRLAGHNERRRKNTAESYGEGSSRK--GVGTQLKESPCRQADERGRYQMSIPSQGSS 153

Query: 167 TCKHFQIR 174
           + K  QIR
Sbjct: 154 SYKRSQIR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549906|ref|XP_003543331.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 4-like [Glycine max]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 88/129 (68%), Gaps = 22/129 (17%)

Query: 63  LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR---------- 112
           +R CQ     ADL +AKQYHRRH+VCE H KAQVVL+  +RQRFCQQCSR          
Sbjct: 1   MRCCQ----XADLHEAKQYHRRHRVCEYHVKAQVVLVDEVRQRFCQQCSRFHELAEFDDT 56

Query: 113 ------RLAGHNERRRKNAAESNGEGSSCKGTGTG-TQLKDLVCGKLDDKGRIKISIQEN 165
                  LAGHNERRRKN+ +S  EGSS +  GTG  QLKD+ CG+ D++GRI+I+I EN
Sbjct: 57  KRSCRSSLAGHNERRRKNSDQSQAEGSS-RNKGTGHPQLKDITCGQADERGRIQITIHEN 115

Query: 166 ATCKHFQIR 174
           A  KHFQIR
Sbjct: 116 AAYKHFQIR 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584731|ref|XP_002533086.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223527125|gb|EEF29301.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/127 (55%), Positives = 90/127 (70%), Gaps = 19/127 (14%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-------------- 111
           CQV++CGADL+DAK+YHRRHKVCE+HAKA  V++ G+RQRFCQQCS              
Sbjct: 73  CQVERCGADLTDAKRYHRRHKVCEIHAKAPAVVVAGLRQRFCQQCSRFHELVEFDEAKRS 132

Query: 112 --RRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQE--NAT 167
             RRLAGHNERRRK++AES GEGSS KG  +G QLK+  C  +D++G+ +I+I    ++ 
Sbjct: 133 CRRRLAGHNERRRKSSAESYGEGSSRKGPFSG-QLKESHCRHVDERGKYQITIPTAGSSA 191

Query: 168 CKHFQIR 174
            K  QIR
Sbjct: 192 YKRSQIR 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456643|ref|XP_004146058.1| PREDICTED: squamosa promoter-binding-like protein 4-like [Cucumis sativus] gi|449517046|ref|XP_004165557.1| PREDICTED: squamosa promoter-binding-like protein 4-like [Cucumis sativus]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 19/139 (13%)

Query: 55  KGSSGGS-GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-- 111
           +G SGGS  L SCQ   C ADLS+AK+YHRRHKVCE H+KA +V++ GIRQRFCQQCS  
Sbjct: 64  RGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQQCSRF 123

Query: 112 --------------RRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKL--DDK 155
                         RRLAGHNERRRK++AES GE +S KG+    Q K+  C +L  D +
Sbjct: 124 HELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCRQLVEDQR 183

Query: 156 GRIKISIQENATCKHFQIR 174
            RI+++   ++  KH  IR
Sbjct: 184 SRIQMAPPGSSGYKHLHIR 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461502|ref|XP_002282598.1| PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|302142976|emb|CBI20271.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 86/128 (67%), Gaps = 26/128 (20%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-------------- 111
           CQ +KCGADL+DAK+YHRRHKVCEVHAKA +V + G+RQRFCQQCS              
Sbjct: 84  CQAEKCGADLTDAKRYHRRHKVCEVHAKAAMVEVAGLRQRFCQQCSRFHELSEFDEAKRS 143

Query: 112 --RRLAGHNERRRKNAAES-NGEGSSCKGTGTGTQLKDLVCGKLDDK--GRIKISIQENA 166
             RRLAGHNERRRK A+ES N EGS       G + K+  C + +++  GR++I++   +
Sbjct: 144 CRRRLAGHNERRRKGASESQNAEGS-------GGKEKENQCRQAEERAAGRVEINLPGTS 196

Query: 167 TCKHFQIR 174
           + KHFQIR
Sbjct: 197 SYKHFQIR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.609	0.609	0.469	1.9e-21
TAIR|locus:2087105	181	SPL5 "squamosa promoter bindin	0.425	0.408	0.555	1.3e-20
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.454	0.085	0.526	8e-19
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.344	0.148	0.539	3.9e-18
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.356	0.473	0.551	6.7e-17
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.505	0.264	0.484	2.3e-16
TAIR|locus:2041329	881	SPL1 "squamosa promoter bindin	0.390	0.077	0.535	5.7e-16
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.333	0.056	0.594	1.4e-14
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.333	0.154	0.540	5.3e-14
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.362	0.063	0.544	7.3e-14

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 61/130 (46%), Positives = 80/130 (61%)

Query:    63 LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR---------- 112
             LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCSR          
Sbjct:    51 LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 110

Query:   113 ------RLAGHNERRRKNAAESNGEGSSCKGTGTGTQ-LKDLVCGKLDDKGRIKISI-QE 164
                   RLAGHNERRRK    S+GE  S  G G+G + +   V  +  ++ R+++++   
Sbjct:   111 KRSCRRRLAGHNERRRK----SSGE--STYGEGSGRRGINGQVVMQNQERSRVEMTLPMP 164

Query:   165 NATCKHFQIR 174
             N++ K  QIR
Sbjct:   165 NSSFKRPQIR 174

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 50/90 (55%), Positives = 61/90 (67%)

Query:    64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR----------- 112
             R CQVD+C  +L++AKQY+RRH+VCEVHAKA    + G+RQRFCQQCSR           
Sbjct:    61 RLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAK 120

Query:   113 -----RLAGHNERRRKNAAESNGEGSSCKG 137
                  RLAGHNERRRK + +S GEGS  +G
Sbjct:   121 RSCRRRLAGHNERRRKISGDSFGEGSGRRG 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 8.0e-19, P = 8.0e-19
 Identities = 50/95 (52%), Positives = 58/95 (61%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
             CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSR             
Sbjct:   127 CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRS 186

Query:   113 ---RLAGHNERRRKNAAESNGEGSSCKGTGTGTQL 144
                RLAGHN+RRRK   ++ G G+S     T   +
Sbjct:   187 CRRRLAGHNKRRRKANPDTIGNGTSMSDDQTSNYM 221

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
 Identities = 41/76 (53%), Positives = 48/76 (63%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
             CQV  C  DLS +K YH+RH+VCE H+K  VV++ G+ QRFCQQCSR             
Sbjct:   124 CQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRS 183

Query:   113 ---RLAGHNERRRKNA 125
                RLAGHNERRRK A
Sbjct:   184 CRRRLAGHNERRRKPA 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/78 (55%), Positives = 51/78 (65%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
             CQV+ C AD+S AKQYH+RHKVC+ HAKA  V + G+ QRFCQQCSR             
Sbjct:    54 CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRS 113

Query:   113 ---RLAGHNERRRKNAAE 127
                RLAGHNERRRK+  +
Sbjct:   114 CRRRLAGHNERRRKSTTD 131

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 46/95 (48%), Positives = 54/95 (56%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR-RLAGH--NERR- 121
             CQ + C ADLS AK YHRRHKVCE H+KA  V+  G+ QRFCQQCSR  L     N +R 
Sbjct:   188 CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRS 247

Query:   122 -RKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDK 155
              RK  A+ N     C  + + TQ  D   GK   K
Sbjct:   248 CRKRLADHNRRRRKCHQSASATQ--DTGTGKTTPK 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 45/84 (53%), Positives = 51/84 (60%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
             CQV+ C ADLS  K YHRRHKVCE+H+KA    +GGI QRFCQQCSR             
Sbjct:   106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRS 165

Query:   113 ---RLAGHNERRRKNAAESNGEGS 133
                RLAGHN+RRRK   E    G+
Sbjct:   166 CRRRLAGHNKRRRKTNPEPGANGN 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 44/74 (59%), Positives = 46/74 (62%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
             CQVD C  DLS AK YHRRHKVCEVH+KA   L+G   QRFCQQCSR             
Sbjct:   120 CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 179

Query:   113 ---RLAGHNERRRK 123
                RLAGHN RRRK
Sbjct:   180 CRRRLAGHNRRRRK 193

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 40/74 (54%), Positives = 47/74 (63%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
             CQV+ CG DL++AK Y+ RH+VC VH+K   V + GI QRFCQQCSR             
Sbjct:    74 CQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRS 133

Query:   113 ---RLAGHNERRRK 123
                RLAGHNERRRK
Sbjct:   134 CRRRLAGHNERRRK 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 43/79 (54%), Positives = 47/79 (59%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
             CQVD C  DLS AK YHRRHKVCEVH+KA   L+G   QRFCQQCSR             
Sbjct:    82 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 141

Query:   113 ---RLAGHNERRRKNAAES 128
                RL GHN RRRK   ++
Sbjct:   142 CRRRLDGHNRRRRKTQPDA 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam03110	79	pfam03110, SBP, SBP domain	4e-32

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  109 bits (275), Expect = 4e-32
 Identities = 48/78 (61%), Positives = 54/78 (69%), Gaps = 16/78 (20%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR------------- 112
           CQV+ CGADLS+AK YHRRHKVCEVH+KA VVL+ G+ QRFCQQCSR             
Sbjct: 2   CQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKRS 61

Query: 113 ---RLAGHNERRRKNAAE 127
              RLAGHNERRRK   +
Sbjct: 62  CRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	99.96

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=99.96  E-value=4.3e-31  Score=193.28  Aligned_cols=62  Identities=68%  Similarity=1.167  Sum_probs=47.8

Q ss_pred             ceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH----------------HHHhhhhhhhccccc
Q 030599           65 SCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKNAA  126 (174)
Q Consensus        65 ~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs----------------rrLa~HN~RRRK~~~  126 (174)
                      +||||||++||+.+|.||+||+|||.|++||+|+++|.++|||||||                ++|++||+|||+.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            59999999999999999999999999999999999999999999999                789999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		3e-19
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		5e-16
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		3e-08

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 52/77 (67%), Gaps = 16/77 (20%)
Query: 63  LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------- 111
           LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCS           
Sbjct: 8   LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 67
Query: 112 -----RRLAGHNERRRK 123
                RRLAGHNERRRK
Sbjct: 68  KRSCRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/47 (76%), Positives = 39/47 (82%)
Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR 112
           CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSR
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSR 52

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 16/81 (19%)
Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-------------- 111
           CQV  C AD+S+ K YH+RH+VC   A A  V++ G  +R+CQQC               
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65
Query: 112 --RRLAGHNERRRKNAAESNG 130
             R+L  HN RR++   +  G
Sbjct: 66  CRRKLERHNNRRKRKPVDKGG 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	2e-24
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	8e-24
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	3e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score = 89.0 bits (221), Expect = 2e-24
 Identities = 36/51 (70%), Positives = 39/51 (76%)

Query: 62  GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR 112
               CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSR
Sbjct: 2   SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSR 52

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score = 88.6 bits (219), Expect = 8e-24
 Identities = 55/93 (59%), Positives = 62/93 (66%), Gaps = 16/93 (17%)

Query: 56  GSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS---- 111
           GSSG SGLR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCS    
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 112 ------------RRLAGHNERRRKNAAESNGEG 132
                       RRLAGHNERRRK++ ES    
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score = 79.4 bits (195), Expect = 3e-20
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 16/87 (18%)

Query: 62  GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS---------- 111
            +  CQV  C AD+S+ K YH+RH+VC   A A  V++ G  +R+CQQC           
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 112 ------RRLAGHNERRRKNAAESNGEG 132
                 R+L  HN RR++   +  G  
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDKGGVA 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 26/225 (11%), Positives = 55/225 (24%), Gaps = 97/225 (43%)

Query: 14  KKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGA 73
           K+EE    FV+     +    Y            +    + +  S  + +   Q D+   
Sbjct: 74  KQEEMVQKFVEEVLRIN----YKFL--------MSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 74  DLSDAKQYH--RRHKVCEVHAKAQ-------VVL--MGG--------------------- 101
           D     +Y+  R     ++            V++  + G                     
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 102 -------------------IRQRFCQQ-----CSRRLAGHNERRRKNAAESNGEGSSCKG 137
                              + Q+   Q      SR     N + R ++ ++         
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--------- 232

Query: 138 TGTGTQLKDLVCGK--------LDDKGRIKISIQENATCKHFQIR 174
                +L+ L+  K        L +       +Q       F + 
Sbjct: 233 -----ELRRLLKSKPYENCLLVLLN-------VQNAKAWNAFNLS 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	99.97
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.93

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=2.6e-35  Score=220.81  Aligned_cols=76  Identities=71%  Similarity=1.185  Sum_probs=64.2

Q ss_pred             CCCCCCCcceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH----------------HHHhhhhhh
Q 030599           57 SSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNER  120 (174)
Q Consensus        57 ~~g~~g~~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs----------------rrLa~HN~R  120 (174)
                      ++||++.++||||||++||+.+|.||+||+|||.|+|||+|+|+|+++||||||+                ++|++||+|
T Consensus         2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R   81 (94)
T 1ul4_A            2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER   81 (94)
T ss_dssp             ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred             CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999999                789999999


Q ss_pred             hccccccccCCC
Q 030599          121 RRKNAAESNGEG  132 (174)
Q Consensus       121 RRK~~~~~~~~g  132 (174)
                      |||+++++...+
T Consensus        82 RRk~~~~~~~~~   93 (94)
T 1ul4_A           82 RRKSSGESGPSS   93 (94)
T ss_dssp             CCSCCCC-----
T ss_pred             hccCCCCcCCCC
Confidence            999999986543

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.97  E-value=1.8e-33  Score=208.75  Aligned_cols=68  Identities=43%  Similarity=0.891  Sum_probs=63.7

Q ss_pred             CCCcceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH----------------HHHhhhhhhhccc
Q 030599           61 SGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKN  124 (174)
Q Consensus        61 ~g~~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs----------------rrLa~HN~RRRK~  124 (174)
                      +|.++||||||++||+.+|.||+||+|||.|+|||+|+|+|+++|||||||                ++|++||+|||++
T Consensus         1 G~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~   80 (88)
T 1ul5_A            1 GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK   80 (88)
T ss_dssp             --CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCC
T ss_pred             CCCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccC
Confidence            357899999999999999999999999999999999999999999999999                7899999999998


Q ss_pred             cccc
Q 030599          125 AAES  128 (174)
Q Consensus       125 ~~~~  128 (174)
                      ++++
T Consensus        81 ~~~~   84 (88)
T 1ul5_A           81 PVDK   84 (88)
T ss_dssp             SCSS
T ss_pred             CccC
Confidence            8875

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.93  E-value=5.4e-28  Score=168.54  Aligned_cols=51  Identities=71%  Similarity=1.264  Sum_probs=48.7

Q ss_pred             CCcceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHHH
Q 030599           62 GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR  112 (174)
Q Consensus        62 g~~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCsr  112 (174)
                      +.++||||||++||+.+|.||+||||||.|+|||+|+++|.++|||||||+
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsr   52 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSR   52 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCS
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccC
Confidence            578999999999999999999999999999999999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	8e-27
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	6e-26
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	3e-24

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 94.9 bits (236), Expect = 8e-27
 Identities = 48/81 (59%), Positives = 55/81 (67%), Gaps = 16/81 (19%)

Query: 63  LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------- 111
           LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCS           
Sbjct: 1   LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 60

Query: 112 -----RRLAGHNERRRKNAAE 127
                RRLAGHNERRRK++ E
Sbjct: 61  KRSCRRRLAGHNERRRKSSGE 81

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 92.6 bits (230), Expect = 6e-26
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 16/81 (19%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS-------------- 111
           CQV  C AD+S+ K YH+RH+VC   A A  V++ G  +R+CQQC               
Sbjct: 4   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 63

Query: 112 --RRLAGHNERRRKNAAESNG 130
             R+L  HN RR++   +  G
Sbjct: 64  CRRKLERHNNRRKRKPVDKGG 84

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.5 bits (217), Expect = 3e-24
 Identities = 36/48 (75%), Positives = 39/48 (81%)

Query: 65  SCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSR 112
            CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSR
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSR 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	99.97
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	99.97
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.93

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=4.7e-33  Score=204.35  Aligned_cols=67  Identities=45%  Similarity=0.926  Sum_probs=64.8

Q ss_pred             cceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH----------------HHHhhhhhhhcccccc
Q 030599           64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKNAAE  127 (174)
Q Consensus        64 ~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs----------------rrLa~HN~RRRK~~~~  127 (174)
                      +.||||||++||+.+|.||+||+|||.|+|||+|+|+|+++|||||||                ++|++||+||||++++
T Consensus         2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (86)
T d1ul5a_           2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD   81 (86)
T ss_dssp             CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred             CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence            689999999999999999999999999999999999999999999999                7999999999999999


Q ss_pred             ccC
Q 030599          128 SNG  130 (174)
Q Consensus       128 ~~~  130 (174)
                      +++
T Consensus        82 ~~g   84 (86)
T d1ul5a_          82 KGG   84 (86)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            765

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=7.2e-33  Score=201.43  Aligned_cols=64  Identities=73%  Similarity=1.273  Sum_probs=62.1

Q ss_pred             cceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH----------------HHHhhhhhhhcccccc
Q 030599           64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS----------------RRLAGHNERRRKNAAE  127 (174)
Q Consensus        64 ~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs----------------rrLa~HN~RRRK~~~~  127 (174)
                      ..||||||++||+.+|.||+||+|||.|+|||+|+|+|+++|||||||                ++|++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            579999999999999999999999999999999999999999999999                7999999999999875

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.1e-27  Score=164.91  Aligned_cols=48  Identities=73%  Similarity=1.316  Sum_probs=47.1

Q ss_pred             cceecCCCccccccChhhhhhccchhhhhccceEEECCccccccHHHH
Q 030599           64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCS  111 (174)
Q Consensus        64 ~~CQVeGC~aDLs~~K~YhrRhRVCE~H~KAp~V~v~G~~qRFCQQCs  111 (174)
                      .+||||||++||+.+|.|||||||||.|+|||+|+|+|++||||||||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCs   49 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCS   49 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccC
Confidence            479999999999999999999999999999999999999999999998